AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016042.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016042.01.T01 MTR_3g082200 86.056 251 28 2 10 253 384 634 4.77e-153 440
MsG0380016042.01.T01 MTR_3g082200 86.056 251 28 2 10 253 399 649 8.67e-153 440
MsG0380016042.01.T01 MTR_3g082200 86.056 251 28 2 10 253 522 772 2.46e-151 441
MsG0380016042.01.T01 MTR_4g134320 52.778 252 107 5 10 253 521 768 1.15e-89 281
MsG0380016042.01.T01 MTR_7g098070 51.984 252 109 5 10 253 517 764 1.98e-86 272
MsG0380016042.01.T01 MTR_5g055920 51.587 252 112 4 10 251 416 667 5.17e-84 264
MsG0380016042.01.T01 MTR_4g103480 50.397 252 115 4 10 251 536 787 1.43e-83 265
MsG0380016042.01.T01 MTR_4g103490 50.794 252 114 4 10 251 533 784 4.02e-83 264
MsG0380016042.01.T01 MTR_3g061110 53.386 251 107 4 10 251 504 753 2.20e-82 261
MsG0380016042.01.T01 MTR_4g103495 49.206 252 118 4 10 251 373 624 2.56e-81 256
MsG0380016042.01.T01 MTR_4g103450 50.000 252 116 4 10 251 493 744 2.80e-81 258
MsG0380016042.01.T01 MTR_4g103430 49.004 251 118 3 10 250 518 768 8.09e-81 258
MsG0380016042.01.T01 MTR_4g103400 50.612 245 111 4 10 244 525 769 4.29e-80 256
MsG0380016042.01.T01 MTR_5g085690 51.575 254 109 4 8 250 538 788 1.10e-76 247
MsG0380016042.01.T01 MTR_5g096750 48.810 252 110 4 10 251 523 765 2.20e-74 241
MsG0380016042.01.T01 MTR_7g081750 49.603 252 117 5 10 251 547 798 2.72e-73 238
MsG0380016042.01.T01 MTR_7g081420 48.413 252 120 5 10 251 534 785 1.53e-71 233
MsG0380016042.01.T01 MTR_4g103495 52.093 215 97 3 10 221 522 733 1.65e-71 233
MsG0380016042.01.T01 MTR_7g081580 48.016 252 121 5 10 251 533 784 3.76e-68 224
MsG0380016042.01.T01 MTR_7g081380 46.245 253 125 5 10 251 555 807 1.55e-65 218
MsG0380016042.01.T01 MTR_7g081500 48.413 252 120 5 10 251 532 783 1.04e-64 215
MsG0380016042.01.T01 MTR_7g481600 45.238 252 128 5 10 251 533 784 1.78e-62 209
MsG0380016042.01.T01 MTR_8g021130 44.574 258 127 7 10 251 518 775 2.11e-61 206
MsG0380016042.01.T01 MTR_5g016120 43.701 254 129 5 10 249 506 759 2.49e-61 206
MsG0380016042.01.T01 MTR_0047s0120 42.292 253 132 6 10 248 502 754 1.02e-60 204
MsG0380016042.01.T01 MTR_7g075900 42.188 256 132 6 11 250 516 771 4.28e-60 202
MsG0380016042.01.T01 MTR_4g073540 42.586 263 132 6 10 253 508 770 2.53e-59 200
MsG0380016042.01.T01 MTR_8g083220 41.732 254 131 7 10 253 531 777 6.56e-58 197
MsG0380016042.01.T01 MTR_2g042130 44.488 254 125 8 10 248 518 770 1.56e-57 196
MsG0380016042.01.T01 MTR_4g095360 39.216 255 141 6 10 250 500 754 9.80e-57 193
MsG0380016042.01.T01 MTR_8g022870 40.230 261 136 5 10 250 515 775 6.48e-56 191
MsG0380016042.01.T01 MTR_3g102810 41.379 261 131 6 10 249 494 753 7.57e-56 191
MsG0380016042.01.T01 MTR_1g102350 42.353 255 132 9 10 250 523 776 1.13e-55 191
MsG0380016042.01.T01 MTR_8g072440 41.600 250 128 6 10 251 472 711 9.46e-55 187
MsG0380016042.01.T01 MTR_5g025010 42.800 250 127 6 10 251 477 718 1.55e-54 187
MsG0380016042.01.T01 MTR_8g072440 41.600 250 128 6 10 251 514 753 1.59e-54 187
MsG0380016042.01.T01 MTR_5g025010 42.800 250 127 6 10 251 509 750 1.68e-54 187
MsG0380016042.01.T01 MTR_1g018510 40.977 266 129 6 10 249 461 724 2.38e-54 186
MsG0380016042.01.T01 MTR_7g098630 41.065 263 134 6 10 252 501 762 2.55e-53 185
MsG0380016042.01.T01 MTR_4g053630 39.683 252 141 6 11 253 406 655 9.23e-53 181
MsG0380016042.01.T01 MTR_4g053630 39.683 252 141 6 11 253 483 732 1.69e-52 181
MsG0380016042.01.T01 MTR_4g125180 42.913 254 129 9 10 248 497 749 4.76e-52 180
MsG0380016042.01.T01 MTR_2g049200 42.264 265 124 11 10 253 502 758 3.55e-51 178
MsG0380016042.01.T01 MTR_1g078110 41.509 265 127 11 10 253 499 756 5.78e-51 177
MsG0380016042.01.T01 MTR_4g102400 41.667 252 131 6 10 250 506 752 1.15e-50 176
MsG0380016042.01.T01 MTR_3g114420 38.996 259 142 6 10 253 510 767 1.49e-50 176
MsG0380016042.01.T01 MTR_4g053635 38.735 253 142 7 12 253 425 675 5.66e-50 174
MsG0380016042.01.T01 MTR_8g005710 36.782 261 137 8 10 253 452 701 7.51e-50 174
MsG0380016042.01.T01 MTR_5g011190 41.897 253 128 5 10 250 508 753 1.42e-49 173
MsG0380016042.01.T01 MTR_8g024420 41.065 263 126 12 10 250 466 721 4.09e-49 172
MsG0380016042.01.T01 MTR_5g011370 41.502 253 129 5 10 250 528 773 8.18e-49 171
MsG0380016042.01.T01 MTR_3g104930 39.300 257 139 6 10 250 506 761 1.03e-48 171
MsG0380016042.01.T01 MTR_1g007030 35.547 256 146 6 10 253 487 735 3.04e-48 169
MsG0380016042.01.T01 MTR_2g042650 38.132 257 138 8 10 253 397 645 4.49e-48 168
MsG0380016042.01.T01 MTR_5g011340 41.569 255 126 6 10 250 505 750 5.82e-48 169
MsG0380016042.01.T01 MTR_5g011310 41.176 255 127 6 10 250 508 753 6.55e-48 169
MsG0380016042.01.T01 MTR_1g006990 35.938 256 145 6 10 253 489 737 6.80e-48 169
MsG0380016042.01.T01 MTR_2g044630 38.800 250 132 8 14 250 464 705 7.28e-48 168
MsG0380016042.01.T01 MTR_8g027260 37.354 257 141 8 10 253 405 654 1.02e-47 167
MsG0380016042.01.T01 MTR_5g011320 41.176 255 127 6 10 250 500 745 1.78e-47 167
MsG0380016042.01.T01 MTR_8g024380 39.924 263 129 11 10 250 503 758 2.23e-47 167
MsG0380016042.01.T01 MTR_8g024390 40.840 262 128 11 10 250 502 757 3.25e-47 167
MsG0380016042.01.T01 MTR_7g034380 35.521 259 139 7 10 251 445 692 4.02e-47 166
MsG0380016042.01.T01 MTR_1g048110 35.409 257 145 7 10 253 485 733 8.32e-47 166
MsG0380016042.01.T01 MTR_5g011260 40.000 255 130 5 10 250 506 751 1.60e-46 165
MsG0380016042.01.T01 MTR_8g042670 37.549 253 145 7 10 251 384 634 1.66e-46 164
MsG0380016042.01.T01 MTR_5g011270 39.608 255 131 5 10 250 506 751 2.33e-46 164
MsG0380016042.01.T01 MTR_1g079120 41.544 272 129 12 3 250 495 760 2.60e-46 164
MsG0380016042.01.T01 MTR_8g042670 37.549 253 145 7 10 251 508 758 4.26e-46 164
MsG0380016042.01.T01 MTR_3g464790 39.300 257 127 7 10 250 488 731 9.01e-46 163
MsG0380016042.01.T01 MTR_7g118080 39.464 261 140 8 10 253 499 758 2.01e-45 162
MsG0380016042.01.T01 MTR_2g018135 39.608 255 136 7 10 250 532 782 2.54e-45 162
MsG0380016042.01.T01 MTR_8g042710 37.008 254 148 7 10 251 511 764 3.46e-45 161
MsG0380016042.01.T01 MTR_6g055410 35.135 259 145 8 10 253 464 714 3.77e-45 161
MsG0380016042.01.T01 MTR_6g055570 35.907 259 143 8 10 253 482 732 4.03e-45 161
MsG0380016042.01.T01 MTR_8g024370 39.147 258 137 9 10 250 502 756 5.11e-45 161
MsG0380016042.01.T01 MTR_8g006680 36.293 259 133 7 10 253 484 725 5.69e-44 158
MsG0380016042.01.T01 MTR_8g005300 36.293 259 133 7 10 253 484 725 5.69e-44 158
MsG0380016042.01.T01 MTR_8g005640 36.293 259 133 7 10 253 484 725 5.69e-44 158
MsG0380016042.01.T01 MTR_8g079900 35.547 256 141 8 10 250 397 643 1.12e-43 156
MsG0380016042.01.T01 MTR_8g079900 35.547 256 141 8 10 250 495 741 1.58e-43 157
MsG0380016042.01.T01 MTR_5g011280 38.846 260 126 6 10 250 510 755 4.13e-43 155
MsG0380016042.01.T01 MTR_3g010080 33.591 259 148 9 10 253 485 734 1.89e-42 154
MsG0380016042.01.T01 MTR_7g079310 39.850 266 139 13 3 250 501 763 3.54e-42 153
MsG0380016042.01.T01 MTR_4g127480 37.548 261 139 9 10 253 563 816 5.00e-42 152
MsG0380016042.01.T01 MTR_7g079300 39.922 258 136 11 10 250 510 765 7.96e-42 152
MsG0380016042.01.T01 MTR_2g018125 36.863 255 143 7 10 250 533 783 3.09e-41 150
MsG0380016042.01.T01 MTR_8g033150 33.463 257 145 8 10 250 478 724 1.43e-40 148
MsG0380016042.01.T01 MTR_8g033150 33.463 257 145 8 10 250 505 751 1.63e-40 148
MsG0380016042.01.T01 MTR_7g075890 32.061 262 143 7 10 250 650 897 6.61e-40 147
MsG0380016042.01.T01 MTR_6g075370 37.736 212 110 8 10 210 443 643 8.62e-39 143
MsG0380016042.01.T01 MTR_3g452290 32.331 266 135 8 1 253 338 571 1.88e-38 141
MsG0380016042.01.T01 MTR_3g451220 32.331 266 135 8 1 253 338 571 1.88e-38 141
MsG0380016042.01.T01 MTR_2g037850 36.047 258 137 10 10 248 563 811 1.12e-36 137
MsG0380016042.01.T01 MTR_8g089230 33.077 260 147 9 10 250 594 845 4.03e-35 133
MsG0380016042.01.T01 MTR_2g042640 37.264 212 102 8 10 213 418 606 5.86e-34 129
MsG0380016042.01.T01 MTR_7g081660 45.556 180 89 4 81 251 374 553 4.42e-33 126
MsG0380016042.01.T01 MTR_7g104200 34.630 257 143 8 10 250 494 741 5.07e-32 124
MsG0380016042.01.T01 MTR_2g070260 34.158 202 114 6 51 240 1 195 4.06e-31 114
MsG0380016042.01.T01 MTR_4g132620 32.000 250 147 10 10 244 566 807 3.17e-30 119
MsG0380016042.01.T01 MTR_4g053665 31.873 251 126 9 10 253 1 213 2.22e-29 110
MsG0380016042.01.T01 MTR_3g114140 36.150 213 121 6 10 211 210 418 4.88e-29 114
MsG0380016042.01.T01 MTR_2g046740 30.566 265 148 9 10 250 586 838 5.04e-29 115
MsG0380016042.01.T01 MTR_4g126230 33.679 193 107 8 4 186 67 248 2.09e-26 103
MsG0380016042.01.T01 MTR_5g081130 33.333 162 97 5 100 250 11 172 1.32e-21 89.7
MsG0380016042.01.T01 MTR_5g011300 48.454 97 50 0 51 147 1 97 3.92e-21 85.5
MsG0380016042.01.T01 MTR_5g044060 41.880 117 56 3 3 112 25 136 1.25e-18 81.3
MsG0380016042.01.T01 MTR_8g027660 31.401 207 107 9 62 253 63 249 6.77e-18 80.9
MsG0380016042.01.T01 MTR_7g079295 38.562 153 72 8 115 250 362 509 1.79e-15 75.9
MsG0380016042.01.T01 MTR_4g071560 43.158 95 50 1 10 100 443 537 6.83e-15 74.3
MsG0380016042.01.T01 MTR_8g042710 38.158 76 46 1 10 84 511 586 3.26e-12 66.2
MsG0380016042.01.T01 MTR_3g114410 44.444 72 39 1 10 81 509 579 4.67e-11 62.8
MsG0380016042.01.T01 MTR_3g005755 45.205 73 34 3 41 109 236 306 9.08e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016042.01.T01 AT2G04160 59.761 251 92 4 10 251 521 771 8.20e-95 295
MsG0380016042.01.T01 AT5G59810 55.823 249 103 5 10 251 527 775 1.11e-87 276
MsG0380016042.01.T01 AT5G67360 44.664 253 128 5 10 250 502 754 4.04e-66 218
MsG0380016042.01.T01 AT5G11940 43.701 254 124 7 10 251 507 753 6.52e-56 191
MsG0380016042.01.T01 AT2G05920 43.137 255 128 8 10 249 496 748 4.12e-55 189
MsG0380016042.01.T01 AT4G34980 41.762 261 132 9 10 250 498 758 4.16e-55 189
MsG0380016042.01.T01 AT3G14240 39.847 261 137 5 10 250 509 769 8.59e-55 188
MsG0380016042.01.T01 AT4G10540 44.841 252 122 8 10 251 520 764 3.99e-54 186
MsG0380016042.01.T01 AT3G14067 40.684 263 135 7 10 251 506 768 5.44e-54 186
MsG0380016042.01.T01 AT5G58840 40.385 260 124 7 10 250 459 706 1.65e-53 184
MsG0380016042.01.T01 AT5G59090 42.023 257 124 9 10 250 479 726 3.09e-53 183
MsG0380016042.01.T01 AT5G59090 42.023 257 124 9 10 250 481 728 3.45e-53 183
MsG0380016042.01.T01 AT5G59090 42.023 257 119 9 10 250 481 723 1.08e-52 182
MsG0380016042.01.T01 AT5G59100 39.615 260 134 8 10 253 488 740 1.88e-52 181
MsG0380016042.01.T01 AT4G26330 40.000 260 133 7 10 250 480 735 2.19e-52 181
MsG0380016042.01.T01 AT4G26330 40.000 260 133 7 10 250 466 721 2.21e-52 181
MsG0380016042.01.T01 AT1G04110 40.226 266 127 7 10 250 512 770 1.85e-51 179
MsG0380016042.01.T01 AT4G21650 42.688 253 127 8 10 251 516 761 1.86e-51 179
MsG0380016042.01.T01 AT5G58830 37.795 254 139 5 10 250 458 705 3.70e-51 177
MsG0380016042.01.T01 AT4G10520 40.873 252 132 8 10 251 501 745 5.81e-51 177
MsG0380016042.01.T01 AT4G21640 41.897 253 129 7 10 251 483 728 1.39e-50 176
MsG0380016042.01.T01 AT4G10510 43.651 252 125 8 10 251 451 695 1.90e-50 176
MsG0380016042.01.T01 AT4G10510 43.651 252 125 8 10 251 466 710 1.96e-50 176
MsG0380016042.01.T01 AT4G10510 43.651 252 125 8 10 251 522 766 2.12e-50 176
MsG0380016042.01.T01 AT4G10510 43.651 252 125 8 10 251 510 754 2.20e-50 176
MsG0380016042.01.T01 AT5G45650 40.234 256 133 5 10 250 538 788 2.54e-50 176
MsG0380016042.01.T01 AT5G45650 40.234 256 133 5 10 250 538 788 2.54e-50 176
MsG0380016042.01.T01 AT4G21630 41.502 253 130 7 10 251 509 754 2.66e-50 176
MsG0380016042.01.T01 AT4G10550 42.857 252 126 8 10 251 468 711 3.35e-50 175
MsG0380016042.01.T01 AT4G10550 42.857 252 126 8 10 251 468 711 3.35e-50 175
MsG0380016042.01.T01 AT4G10550 42.857 252 126 8 10 251 524 767 4.66e-50 175
MsG0380016042.01.T01 AT4G10550 42.857 252 126 8 10 251 540 783 5.51e-50 175
MsG0380016042.01.T01 AT1G01900 41.699 259 132 6 11 250 513 771 8.77e-50 174
MsG0380016042.01.T01 AT5G51750 38.824 255 142 8 10 250 520 774 1.78e-49 173
MsG0380016042.01.T01 AT5G59120 40.856 257 127 9 10 250 480 727 2.70e-49 172
MsG0380016042.01.T01 AT1G66220 38.735 253 129 7 10 251 508 745 3.00e-49 172
MsG0380016042.01.T01 AT1G20160 38.372 258 143 7 10 252 468 724 3.52e-49 172
MsG0380016042.01.T01 AT1G20160 38.372 258 143 7 10 252 507 763 4.29e-49 172
MsG0380016042.01.T01 AT5G59130 40.392 255 128 7 10 250 442 686 6.76e-49 171
MsG0380016042.01.T01 AT1G32970 40.079 252 134 8 10 251 479 723 7.05e-49 171
MsG0380016042.01.T01 AT5G59130 40.392 255 128 7 10 250 481 725 7.84e-49 171
MsG0380016042.01.T01 AT5G59130 40.392 255 128 7 10 250 477 721 8.08e-49 171
MsG0380016042.01.T01 AT5G59130 40.392 255 128 7 10 250 471 715 8.36e-49 171
MsG0380016042.01.T01 AT5G58820 39.683 252 135 7 10 250 455 700 6.76e-48 168
MsG0380016042.01.T01 AT1G66210 41.107 253 126 9 10 251 511 751 1.11e-47 168
MsG0380016042.01.T01 AT3G46850 38.281 256 137 7 10 252 489 736 2.04e-47 167
MsG0380016042.01.T01 AT3G46840 38.431 255 138 6 10 252 489 736 1.37e-46 165
MsG0380016042.01.T01 AT5G45640 38.462 260 139 6 10 253 500 754 1.97e-46 165
MsG0380016042.01.T01 AT4G21326 41.270 252 131 7 10 251 444 688 2.34e-46 164
MsG0380016042.01.T01 AT1G32960 40.476 252 133 7 10 251 522 766 3.28e-46 164
MsG0380016042.01.T01 AT4G10530 40.639 219 120 6 43 251 518 736 1.06e-45 163
MsG0380016042.01.T01 AT1G32950 40.079 252 134 7 10 251 467 711 1.70e-44 159
MsG0380016042.01.T01 AT1G32950 40.079 252 134 7 10 251 518 762 1.89e-44 159
MsG0380016042.01.T01 AT1G32940 39.683 252 135 6 10 251 468 712 1.90e-43 156
MsG0380016042.01.T01 AT1G32940 39.683 252 135 6 10 251 468 712 1.90e-43 156
MsG0380016042.01.T01 AT1G32940 39.683 252 135 6 10 251 519 763 2.56e-43 156
MsG0380016042.01.T01 AT1G32980 42.623 183 98 5 47 222 3 185 5.27e-43 145
MsG0380016042.01.T01 AT5G59190 38.356 219 115 8 10 218 443 651 1.55e-41 150
MsG0380016042.01.T01 AT5G03620 36.567 268 131 9 10 250 503 758 2.06e-41 151
MsG0380016042.01.T01 AT1G20150 37.405 262 141 7 10 250 511 770 5.04e-40 147
MsG0380016042.01.T01 AT4G00230 34.630 257 143 8 10 250 496 743 8.38e-40 146
MsG0380016042.01.T01 AT4G15040 35.652 230 125 6 35 250 465 685 1.26e-38 142
MsG0380016042.01.T01 AT4G15040 35.652 230 125 6 35 250 465 685 1.26e-38 142
MsG0380016042.01.T01 AT4G21323 37.647 255 137 9 10 251 549 794 1.60e-38 142
MsG0380016042.01.T01 AT5G44530 33.716 261 148 8 10 252 582 835 2.65e-37 139
MsG0380016042.01.T01 AT4G30020 35.769 260 138 11 10 249 560 810 8.90e-37 138
MsG0380016042.01.T01 AT4G30020 35.769 260 138 11 10 249 560 810 8.90e-37 138
MsG0380016042.01.T01 AT4G30020 35.769 260 138 11 10 249 560 810 8.90e-37 138
MsG0380016042.01.T01 AT4G30020 35.769 260 138 11 10 249 560 810 8.90e-37 138
MsG0380016042.01.T01 AT4G20430 32.946 258 150 7 10 250 597 848 3.66e-35 133
MsG0380016042.01.T01 AT4G20430 32.946 258 150 7 10 250 597 848 3.66e-35 133
MsG0380016042.01.T01 AT4G20430 32.946 258 150 7 10 250 573 824 3.86e-35 133
MsG0380016042.01.T01 AT2G19170 36.293 259 138 12 10 249 559 809 8.43e-34 129
MsG0380016042.01.T01 AT2G19170 36.293 259 138 12 10 249 559 809 8.43e-34 129
MsG0380016042.01.T01 AT5G67090 36.475 244 124 9 10 239 489 715 1.76e-33 128
MsG0380016042.01.T01 AT5G44530 30.769 286 148 9 10 252 582 860 1.04e-32 126
MsG0380016042.01.T01 AT1G30600 30.769 260 156 8 10 250 572 826 1.22e-31 123
MsG0380016042.01.T01 AT1G62340 34.496 258 149 11 10 253 581 832 6.83e-30 118
MsG0380016042.01.T01 AT2G39850 30.605 281 137 13 10 253 509 768 1.84e-27 111
MsG0380016042.01.T01 AT5G59110 37.267 161 86 5 105 250 6 166 2.75e-22 90.5
MsG0380016042.01.T01 AT5G58840 48.611 72 37 0 10 81 459 530 2.52e-20 90.1
MsG0380016042.01.T01 AT4G00230 43.421 76 43 0 10 85 496 571 8.45e-17 79.7
MsG0380016042.01.T01 AT5G03620 45.833 72 39 0 10 81 503 574 2.90e-15 75.5

Find 61 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGGACTCCAATATATT+TGG 0.194701 3:+78261708 None:intergenic
TGAGAACCTTGTATCCTTCT+TGG 0.224032 3:-78262440 MsG0380016042.01.T01:CDS
ATTAGTTGTGAAAGCTATTT+AGG 0.233076 3:-78261586 MsG0380016042.01.T01:exon
CAACGAGGCGGAGCCAATTC+TGG 0.290187 3:-78262066 MsG0380016042.01.T01:CDS
CCTCACATTTCGGGAATTGC+AGG 0.300965 3:-78262468 MsG0380016042.01.T01:CDS
AAATGGTGTTGCTTGGCTTT+TGG 0.308707 3:+78262037 None:intergenic
TTCTGTGAAGCCAAATATAT+TGG 0.310856 3:-78261718 MsG0380016042.01.T01:CDS
TTATTCCAAATTGTAGCTTC+TGG 0.315049 3:-78261504 MsG0380016042.01.T01:three_prime_UTR
TAAATAGCTTTCACAACTAA+TGG 0.332014 3:+78261588 None:intergenic
GACTCCCAGAAGCTACAATT+TGG 0.335900 3:+78261499 None:intergenic
TTCAACTTCTTATGTGCATT+AGG 0.338449 3:-78261936 MsG0380016042.01.T01:CDS
TGTCCTGCTCCGTAGCTAAA+TGG 0.340490 3:+78262020 None:intergenic
ATGTCGAGCCCTCACATTTC+GGG 0.340640 3:-78262477 MsG0380016042.01.T01:CDS
TGAGGATACTGAAATTCTTA+TGG 0.352631 3:+78261865 None:intergenic
CCAGGATCTATTGCACTGTT+TGG 0.352830 3:+78261990 None:intergenic
CATGTCGAGCCCTCACATTT+CGG 0.360421 3:-78262478 MsG0380016042.01.T01:CDS
ATACATTTCTAGTTGATTAG+TGG 0.363651 3:-78261531 MsG0380016042.01.T01:three_prime_UTR
CTGTGATTGAAGGATAGTTT+AGG 0.376700 3:+78261841 None:intergenic
TATTCCAAATTGTAGCTTCT+GGG 0.393187 3:-78261503 MsG0380016042.01.T01:three_prime_UTR
GTCACTGATCCAGAGAGATT+TGG 0.395242 3:+78261816 None:intergenic
TTGTCGATCTCTTCATTAGT+TGG 0.405128 3:+78262537 None:intergenic
ACACCTGGTGCTGTGATATC+AGG 0.406349 3:+78262594 None:intergenic
AAATTCTTATGGCATTTGTA+AGG 0.415542 3:+78261876 None:intergenic
GCAACAAAGAGTTATGTGTT+TGG 0.421795 3:-78261651 MsG0380016042.01.T01:CDS
TGAACAACAACGTATGTTCC+TGG 0.424298 3:+78261762 None:intergenic
CTTGTATCCTTCTTGGAGTC+CGG 0.441288 3:-78262433 MsG0380016042.01.T01:CDS
ATGTGTTTGGAAAGATGATT+TGG 0.450319 3:-78261638 MsG0380016042.01.T01:CDS
ATCACAGTTCCAAATCTCTC+TGG 0.457484 3:-78261825 MsG0380016042.01.T01:CDS
TGAGTAAGACAAATTGAATT+CGG 0.461464 3:+78262511 None:intergenic
CGTAGCTAAATGGTGTTGCT+TGG 0.475617 3:+78262030 None:intergenic
AGATTTGGAACTGTGATTGA+AGG 0.488637 3:+78261831 None:intergenic
GGAAAGATGATTTGGTCAGA+TGG 0.495386 3:-78261630 MsG0380016042.01.T01:CDS
CTGGATCAGTGACAGTTACA+AGG 0.503629 3:-78261806 MsG0380016042.01.T01:CDS
TTGAAGGATAGTTTAGGTTG+AGG 0.511051 3:+78261847 None:intergenic
CAGCCTGATATCACAGCACC+AGG 0.512049 3:-78262597 MsG0380016042.01.T01:CDS
GAAAGATGATTTGGTCAGAT+GGG 0.519938 3:-78261629 MsG0380016042.01.T01:CDS
CCAAACAGTGCAATAGATCC+TGG 0.530386 3:-78261990 MsG0380016042.01.T01:CDS
GTAAAATTGAAAGTGAAGAA+AGG 0.530982 3:-78261678 MsG0380016042.01.T01:CDS
AAGGATACAAGGTTCTCAAA+AGG 0.532636 3:+78262445 None:intergenic
ATTCAATTTGTCTTACTCAC+CGG 0.545243 3:-78262507 MsG0380016042.01.T01:CDS
ACAGAAACAGTGATCCCACT+TGG 0.545751 3:+78261735 None:intergenic
TGGCTCTTCAGCTTCAGTGA+AGG 0.552957 3:+78262557 None:intergenic
GTTATGTCATAAACAAGTCC+AGG 0.556512 3:+78261972 None:intergenic
ACACCATTTAGCTACGGAGC+AGG 0.563765 3:-78262023 MsG0380016042.01.T01:CDS
ATAGCAGATTTAATAGCAGC+CGG 0.569981 3:+78262414 None:intergenic
CGAAATGTGAGGGCTCGACA+TGG 0.572068 3:+78262479 None:intergenic
AGGGCTCGACATGGATGTGC+CGG 0.572843 3:+78262488 None:intergenic
CGGACTCCAAGAAGGATACA+AGG 0.588458 3:+78262434 None:intergenic
CTGCAATTCCCGAAATGTGA+GGG 0.602176 3:+78262469 None:intergenic
ATAGCAGCCGGACTCCAAGA+AGG 0.603386 3:+78262426 None:intergenic
CAGAAACAGTGATCCCACTT+GGG 0.616175 3:+78261736 None:intergenic
AAATCTGCTATCATGACCAA+AGG 0.617254 3:-78262402 MsG0380016042.01.T01:intron
CAAGCAACACCATTTAGCTA+CGG 0.620162 3:-78262029 MsG0380016042.01.T01:CDS
GAGGCGGAGCCAATTCTGGA+TGG 0.634768 3:-78262062 MsG0380016042.01.T01:CDS
GCTGCTATAACCGACACACC+TGG 0.638678 3:+78262579 None:intergenic
TATCACAGCACCAGGTGTGT+CGG 0.657844 3:-78262589 MsG0380016042.01.T01:CDS
CCTGCAATTCCCGAAATGTG+AGG 0.663023 3:+78262468 None:intergenic
TTGTTGTTCAGAACCCAAGT+GGG 0.665767 3:-78261749 MsG0380016042.01.T01:CDS
GTTGTTGTTCAGAACCCAAG+TGG 0.666060 3:-78261750 MsG0380016042.01.T01:CDS
AGCTACAACATTAGACAACG+AGG 0.731411 3:-78262081 MsG0380016042.01.T01:CDS
TACAACATTAGACAACGAGG+CGG 0.751688 3:-78262078 MsG0380016042.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTACTTCAATATATT+TGG + Chr3:78262365-78262384 None:intergenic 15.0%
!!! CAAATGTCATTATTTTCAAA+AGG - Chr3:78262154-78262173 MsG0380016042.01.T01:intron 20.0%
! AAATTCTTATGGCATTTGTA+AGG + Chr3:78262181-78262200 None:intergenic 25.0%
! ACAAGGACATTAAAAAATGT+TGG - Chr3:78262265-78262284 MsG0380016042.01.T01:intron 25.0%
! ATTAGTTGTGAAAGCTATTT+AGG - Chr3:78262468-78262487 MsG0380016042.01.T01:CDS 25.0%
! GTAAAATTGAAAGTGAAGAA+AGG - Chr3:78262376-78262395 MsG0380016042.01.T01:intron 25.0%
! TAAATAGCTTTCACAACTAA+TGG + Chr3:78262469-78262488 None:intergenic 25.0%
! TATTTGGACTCCAATATATT+TGG + Chr3:78262349-78262368 None:intergenic 25.0%
! TGAGTAAGACAAATTGAATT+CGG + Chr3:78261546-78261565 None:intergenic 25.0%
! TTGGTTAAATTCACATCATA+CGG + Chr3:78261819-78261838 None:intergenic 25.0%
!!! ATACATTTCTAGTTGATTAG+TGG - Chr3:78262523-78262542 MsG0380016042.01.T01:CDS 25.0%
ACACAAAAGTTGAGATTTCT+TGG + Chr3:78261727-78261746 None:intergenic 30.0%
ATGTGTTTGGAAAGATGATT+TGG - Chr3:78262416-78262435 MsG0380016042.01.T01:CDS 30.0%
ATTCAATTTGTCTTACTCAC+CGG - Chr3:78261547-78261566 MsG0380016042.01.T01:three_prime_UTR 30.0%
CACAAAAGTTGAGATTTCTT+GGG + Chr3:78261726-78261745 None:intergenic 30.0%
TATTCCAAATTGTAGCTTCT+GGG - Chr3:78262551-78262570 MsG0380016042.01.T01:CDS 30.0%
TGAGGATACTGAAATTCTTA+TGG + Chr3:78262192-78262211 None:intergenic 30.0%
TGTCGAAAGAAAAACAACTA+CGG + Chr3:78262604-78262623 None:intergenic 30.0%
TTATTCCAAATTGTAGCTTC+TGG - Chr3:78262550-78262569 MsG0380016042.01.T01:CDS 30.0%
TTCAACTTCTTATGTGCATT+AGG - Chr3:78262118-78262137 MsG0380016042.01.T01:intron 30.0%
TTCAAGAAATGACATGAAGT+AGG + Chr3:78261702-78261721 None:intergenic 30.0%
TTCTGTGAAGCCAAATATAT+TGG - Chr3:78262336-78262355 MsG0380016042.01.T01:intron 30.0%
AAATCTGCTATCATGACCAA+AGG - Chr3:78261652-78261671 MsG0380016042.01.T01:CDS 35.0%
AAGGATACAAGGTTCTCAAA+AGG + Chr3:78261612-78261631 None:intergenic 35.0%
AGGTTGAGATGAATACTACA+CGG + Chr3:78261928-78261947 None:intergenic 35.0%
ATAGCAGATTTAATAGCAGC+CGG + Chr3:78261643-78261662 None:intergenic 35.0%
CAAGAGTTTCTTCTTACCTT+TGG + Chr3:78261671-78261690 None:intergenic 35.0%
CTGTGATTGAAGGATAGTTT+AGG + Chr3:78262216-78262235 None:intergenic 35.0%
GCAACAAAGAGTTATGTGTT+TGG - Chr3:78262403-78262422 MsG0380016042.01.T01:CDS 35.0%
GTTATGTCATAAACAAGTCC+AGG + Chr3:78262085-78262104 None:intergenic 35.0%
GTTGTAGCTGAAAATGATAG+AGG + Chr3:78261962-78261981 None:intergenic 35.0%
TCTCAATTCAGCACTTACAT+TGG + Chr3:78261838-78261857 None:intergenic 35.0%
TTGTCGATCTCTTCATTAGT+TGG + Chr3:78261520-78261539 None:intergenic 35.0%
! AGATTTGGAACTGTGATTGA+AGG + Chr3:78262226-78262245 None:intergenic 35.0%
! TTAAAAAATGTTGGTGCTCC+AGG - Chr3:78262274-78262293 MsG0380016042.01.T01:intron 35.0%
!! GAAAGATGATTTGGTCAGAT+GGG - Chr3:78262425-78262444 MsG0380016042.01.T01:CDS 35.0%
!! TTGAAGGATAGTTTAGGTTG+AGG + Chr3:78262210-78262229 None:intergenic 35.0%
AGCTACAACATTAGACAACG+AGG - Chr3:78261973-78261992 MsG0380016042.01.T01:CDS 40.0%
ATCACAGTTCCAAATCTCTC+TGG - Chr3:78262229-78262248 MsG0380016042.01.T01:intron 40.0%
CAAGCAACACCATTTAGCTA+CGG - Chr3:78262025-78262044 MsG0380016042.01.T01:CDS 40.0%
GTGTAGTATTCATCTCAACC+TGG - Chr3:78261927-78261946 MsG0380016042.01.T01:CDS 40.0%
TACAACATTAGACAACGAGG+CGG - Chr3:78261976-78261995 MsG0380016042.01.T01:CDS 40.0%
TCACATCATACGGAAGTTCA+AGG + Chr3:78261809-78261828 None:intergenic 40.0%
TGAACAACAACGTATGTTCC+TGG + Chr3:78262295-78262314 None:intergenic 40.0%
TGAGAACCTTGTATCCTTCT+TGG - Chr3:78261614-78261633 MsG0380016042.01.T01:CDS 40.0%
TGATAGAGGACAATTAGACC+AGG + Chr3:78261948-78261967 None:intergenic 40.0%
! CTTTTGGTACCATCCAGAAT+TGG + Chr3:78262004-78262023 None:intergenic 40.0%
! TTGTTGTTCAGAACCCAAGT+GGG - Chr3:78262305-78262324 MsG0380016042.01.T01:intron 40.0%
!! GGAAAGATGATTTGGTCAGA+TGG - Chr3:78262424-78262443 MsG0380016042.01.T01:CDS 40.0%
!!! AAATGGTGTTGCTTGGCTTT+TGG + Chr3:78262020-78262039 None:intergenic 40.0%
ACAGAAACAGTGATCCCACT+TGG + Chr3:78262322-78262341 None:intergenic 45.0%
CAGAAACAGTGATCCCACTT+GGG + Chr3:78262321-78262340 None:intergenic 45.0%
CCAAACAGTGCAATAGATCC+TGG - Chr3:78262064-78262083 MsG0380016042.01.T01:CDS 45.0%
CCAGGATCTATTGCACTGTT+TGG + Chr3:78262067-78262086 None:intergenic 45.0%
CTGCAATTCCCGAAATGTGA+GGG + Chr3:78261588-78261607 None:intergenic 45.0%
CTGGATCAGTGACAGTTACA+AGG - Chr3:78262248-78262267 MsG0380016042.01.T01:intron 45.0%
CTTGTATCCTTCTTGGAGTC+CGG - Chr3:78261621-78261640 MsG0380016042.01.T01:CDS 45.0%
GACTCCCAGAAGCTACAATT+TGG + Chr3:78262558-78262577 None:intergenic 45.0%
GTCACTGATCCAGAGAGATT+TGG + Chr3:78262241-78262260 None:intergenic 45.0%
! GTTGTTGTTCAGAACCCAAG+TGG - Chr3:78262304-78262323 MsG0380016042.01.T01:intron 45.0%
!! CGTAGCTAAATGGTGTTGCT+TGG + Chr3:78262027-78262046 None:intergenic 45.0%
ACACCATTTAGCTACGGAGC+AGG - Chr3:78262031-78262050 MsG0380016042.01.T01:CDS 50.0%
ATGTCGAGCCCTCACATTTC+GGG - Chr3:78261577-78261596 MsG0380016042.01.T01:exon 50.0%
CATGTCGAGCCCTCACATTT+CGG - Chr3:78261576-78261595 MsG0380016042.01.T01:exon 50.0%
CCTCACATTTCGGGAATTGC+AGG - Chr3:78261586-78261605 MsG0380016042.01.T01:exon 50.0%
CCTGCAATTCCCGAAATGTG+AGG + Chr3:78261589-78261608 None:intergenic 50.0%
CGGACTCCAAGAAGGATACA+AGG + Chr3:78261623-78261642 None:intergenic 50.0%
TATCACAGCACCAGGTGTGT+CGG - Chr3:78261465-78261484 MsG0380016042.01.T01:three_prime_UTR 50.0%
TGGCTCTTCAGCTTCAGTGA+AGG + Chr3:78261500-78261519 None:intergenic 50.0%
TGTCCTGCTCCGTAGCTAAA+TGG + Chr3:78262037-78262056 None:intergenic 50.0%
!! ACACCTGGTGCTGTGATATC+AGG + Chr3:78261463-78261482 None:intergenic 50.0%
ATAGCAGCCGGACTCCAAGA+AGG + Chr3:78261631-78261650 None:intergenic 55.0%
CAGCCTGATATCACAGCACC+AGG - Chr3:78261457-78261476 MsG0380016042.01.T01:three_prime_UTR 55.0%
CGAAATGTGAGGGCTCGACA+TGG + Chr3:78261578-78261597 None:intergenic 55.0%
GCTGCTATAACCGACACACC+TGG + Chr3:78261478-78261497 None:intergenic 55.0%
AGGGCTCGACATGGATGTGC+CGG + Chr3:78261569-78261588 None:intergenic 60.0%
CAACGAGGCGGAGCCAATTC+TGG - Chr3:78261988-78262007 MsG0380016042.01.T01:CDS 60.0%
GAGGCGGAGCCAATTCTGGA+TGG - Chr3:78261992-78262011 MsG0380016042.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78261427 78262649 78261427 ID=MsG0380016042.01;Name=MsG0380016042.01
Chr3 mRNA 78261427 78262649 78261427 ID=MsG0380016042.01.T01;Parent=MsG0380016042.01;Name=MsG0380016042.01.T01;_AED=0.41;_eAED=0.42;_QI=0|1|0.5|1|1|1|2|160|253
Chr3 exon 78261427 78262101 78261427 ID=MsG0380016042.01.T01:exon:17297;Parent=MsG0380016042.01.T01
Chr3 exon 78262403 78262649 78262403 ID=MsG0380016042.01.T01:exon:17296;Parent=MsG0380016042.01.T01
Chr3 CDS 78262403 78262649 78262403 ID=MsG0380016042.01.T01:cds;Parent=MsG0380016042.01.T01
Chr3 CDS 78261587 78262101 78261587 ID=MsG0380016042.01.T01:cds;Parent=MsG0380016042.01.T01
Chr3 three_prime_UTR 78261427 78261586 78261427 ID=MsG0380016042.01.T01:three_prime_utr;Parent=MsG0380016042.01.T01
Gene Sequence

>MsG0380016042.01.T01

CTGATATCTAACAACTATTGTTTACATTTTCAGCCTGATATCACAGCACCAGGTGTGTCGGTTATAGCAGCCTTCACTGAAGCTGAAGAGCCAACTAATGAAGAGATCGACAATCGCCGAATTCAATTTGTCTTACTCACCGGCACATCCATGTCGAGCCCTCACATTTCGGGAATTGCAGGCCTTTTGAGAACCTTGTATCCTTCTTGGAGTCCGGCTGCTATTAAATCTGCTATCATGACCAAAGCTACAACATTAGACAACGAGGCGGAGCCAATTCTGGATGGTACCAAAAGCCAAGCAACACCATTTAGCTACGGAGCAGGACATGTTGAACCAAACAGTGCAATAGATCCTGGACTTGTTTATGACATAACAACGAATGATTATTTCAACTTCTTATGTGCATTAGGCTATAATGAAACACAAATGTCATTATTTTCAAAAGGTCCTTACAAATGCCATAAGAATTTCAGTATCCTCAACCTAAACTATCCTTCAATCACAGTTCCAAATCTCTCTGGATCAGTGACAGTTACAAGGACATTAAAAAATGTTGGTGCTCCAGGAACATACGTTGTTGTTCAGAACCCAAGTGGGATCACTGTTTCTGTGAAGCCAAATATATTGGAGTCCAAATATATTGAAGTAAAATTGAAAGTGAAGAAAGGAAAAGCAACAAAGAGTTATGTGTTTGGAAAGATGATTTGGTCAGATGGGAAGCATTATGTTAAGAGTCCATTAGTTGTGAAAGCTATTTAG

Protein sequence

>MsG0380016042.01.T01

LISNNYCLHFQPDITAPGVSVIAAFTEAEEPTNEEIDNRRIQFVLLTGTSMSSPHISGIAGLLRTLYPSWSPAAIKSAIMTKATTLDNEAEPILDGTKSQATPFSYGAGHVEPNSAIDPGLVYDITTNDYFNFLCALGYNETQMSLFSKGPYKCHKNFSILNLNYPSITVPNLSGSVTVTRTLKNVGAPGTYVVVQNPSGITVSVKPNILESKYIEVKLKVKKGKATKSYVFGKMIWSDGKHYVKSPLVVKAI*