AlfalfaGEDB | MsG0880046189.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046189.01

KEGG: -
GO: GO:0005576 GO:0009664
PFAM: PF01357 PF03330

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046189.01.T01	XP_027193366.1	72.302	556	122	5	8	537	8	557	0	821

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046189.01.T01	Q8H112	75.573	262	40	4	40	282	46	302	5.53E-134	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046189.01.T01	A0A3Q7Y4L0	72.302	556	122	5	8	537	8	557	0.0	821

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0880046189.01	-0.830251	3.262202e-55	3.418626e-52
MsG0080047967.01	MsG0880046189.01	0.880709	4.389006e-70	2.500810e-66
MsG0080047999.01	MsG0880046189.01	-0.809009	2.338694e-50	1.357422e-47
MsG0080048036.01	MsG0880046189.01	-0.817645	2.961150e-52	2.168704e-49
MsG0080048059.01	MsG0880046189.01	0.892679	1.270607e-74	1.173377e-70
MsG0080048202.01	MsG0880046189.01	-0.822803	1.947977e-53	1.647447e-50
MsG0080048274.01	MsG0880046189.01	0.807466	4.987023e-50	2.779776e-47
MsG0080048347.01	MsG0880046189.01	-0.817184	3.760671e-52	2.719709e-49
MsG0080048352.01	MsG0880046189.01	-0.811998	5.287325e-51	3.321986e-48
MsG0080048560.01	MsG0880046189.01	0.842846	2.015116e-58	3.094414e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046189.01.T01	MTR_4g102440	89.701	301	12	1	1	282	1	301	0.0	518
MsG0880046189.01.T01	MTR_4g102450	94.961	258	10	1	280	537	8	262	0.0	511
MsG0880046189.01.T01	MTR_5g011210	78.740	254	54	0	284	537	10	263	4.45e-152	436
MsG0880046189.01.T01	MTR_5g011220	72.015	268	51	4	36	282	29	293	7.27e-131	384
MsG0880046189.01.T01	MTR_5g079950	53.725	255	115	3	284	537	6	258	2.46e-91	280
MsG0880046189.01.T01	MTR_2g097030	50.196	255	124	3	284	537	7	259	2.58e-88	273
MsG0880046189.01.T01	MTR_7g061720	51.953	256	119	4	283	537	5	257	2.21e-85	265
MsG0880046189.01.T01	MTR_4g063975	50.781	256	120	4	283	537	7	257	4.18e-83	259
MsG0880046189.01.T01	MTR_7g111010	50.391	256	119	4	284	536	4	254	3.24e-82	257
MsG0880046189.01.T01	MTR_5g041700	51.600	250	110	5	284	531	3	243	5.53e-82	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046189.01.T01	AT4G22890	75.862	261	39	4	40	281	46	301	4.70e-135	394
MsG0880046189.01.T01	AT4G22890	75.573	262	40	4	40	282	46	302	5.63e-135	395
MsG0880046189.01.T01	AT4G22890	75.573	262	40	4	40	282	46	302	5.63e-135	395
MsG0880046189.01.T01	AT4G22890	75.191	262	38	4	40	282	46	299	4.32e-134	392
MsG0880046189.01.T01	AT4G22890	74.809	262	40	4	40	282	46	300	5.22e-133	389
MsG0880046189.01.T01	AT4G11960	69.492	295	65	5	7	281	1	290	5.31e-129	379
MsG0880046189.01.T01	AT4G11960	77.253	233	33	2	68	281	42	273	1.67e-122	362
MsG0880046189.01.T01	AT1G12560	69.198	237	72	1	301	537	27	262	1.23e-120	355
MsG0880046189.01.T01	AT1G62980	64.777	247	87	0	291	537	11	257	3.62e-117	347
MsG0880046189.01.T01	AT3G55500	54.618	249	110	3	284	530	6	253	1.20e-90	279

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Find 150 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAATGGAATGAAGG+GGG	0.643418	8:-70304155	None:intergenic
AAAATGAAACTAAAAGGCTC+CGG	0.563124	8:-70307381	None:intergenic
AAAATTGACATGTGTGGAAT+AGG	0.412567	8:-70311211	None:intergenic
AAAATTGCACAGTGGAAGGC+CGG	0.541507	8:+70310163	MsG0880046189.01.T01:CDS
AAAATTTCTTGAAGCTTCTA+TGG	0.224918	8:+70304976	MsG0880046189.01.T01:CDS
AAAGCCACTGCAGATCAACA+AGG	0.674513	8:+70304250	MsG0880046189.01.T01:CDS
AAAGGAGGAGCATGTGGGTA+TGG	0.494882	8:+70309890	MsG0880046189.01.T01:intron
AAGACCTTGTTGATCTGCAG+TGG	0.588296	8:-70304254	None:intergenic
AAGGAGGAACTTATGTGGGA+AGG	0.615460	8:+70304788	MsG0880046189.01.T01:CDS
AAGGCAATGAGAACGTGTGG+AGG	0.623604	8:-70303958	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGAATGGAATGAAG+GGG	-	Chr8:70304159-70304178	None:intergenic	30.0%
AAAATGAAACTAAAAGGCTC+CGG	-	Chr8:70307384-70307403	None:intergenic	30.0%
AAAATTGACATGTGTGGAAT+AGG	-	Chr8:70311214-70311233	None:intergenic	30.0%
ACACAACATAACAAAACATG+AGG	-	Chr8:70308084-70308103	None:intergenic	30.0%
ACTATACTGTCAATTTCAAG+TGG	+	Chr8:70307607-70307626	MsG0880046189.01.T01:CDS	30.0%
ACTTATGCATTACTTCATTC+TGG	-	Chr8:70307867-70307886	None:intergenic	30.0%
ACTTCTGCCAAATATATGAT+TGG	+	Chr8:70306271-70306290	MsG0880046189.01.T01:intron	30.0%
AGAAAAAGAGAATGGAATGA+AGG	-	Chr8:70304161-70304180	None:intergenic	30.0%
AGAATGAAGTAATGCATAAG+TGG	+	Chr8:70307866-70307885	MsG0880046189.01.T01:intron	30.0%
AGGTTATTATTATAATCCCG+CGG	-	Chr8:70308673-70308692	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	70303934	70311239	70303934	ID=MsG0880046189.01;Name=MsG0880046189.01
Chr8	mRNA	70303934	70311239	70303934	ID=MsG0880046189.01.T01;Parent=MsG0880046189.01;Name=MsG0880046189.01.T01;_AED=0.50;_eAED=0.50;_QI=157\|0.6\|0.72\|1\|1\|1\|11\|0\|537
Chr8	exon	70303934	70304271	70303934	ID=MsG0880046189.01.T01:exon:27581;Parent=MsG0880046189.01.T01
Chr8	exon	70304349	70304476	70304349	ID=MsG0880046189.01.T01:exon:27582;Parent=MsG0880046189.01.T01
Chr8	exon	70304734	70304830	70304734	ID=MsG0880046189.01.T01:exon:27583;Parent=MsG0880046189.01.T01
Chr8	exon	70304963	70305063	70304963	ID=MsG0880046189.01.T01:exon:27584;Parent=MsG0880046189.01.T01
Chr8	exon	70306059	70306135	70306059	ID=MsG0880046189.01.T01:exon:27585;Parent=MsG0880046189.01.T01
Chr8	exon	70306915	70306966	70306915	ID=MsG0880046189.01.T01:exon:27586;Parent=MsG0880046189.01.T01
Chr8	exon	70307378	70307488	70307378	ID=MsG0880046189.01.T01:exon:27587;Parent=MsG0880046189.01.T01
Chr8	exon	70307562	70307659	70307562	ID=MsG0880046189.01.T01:exon:27588;Parent=MsG0880046189.01.T01
Chr8	exon	70309352	70309491	70309352	ID=MsG0880046189.01.T01:exon:27589;Parent=MsG0880046189.01.T01
Chr8	exon	70309894	70310209	70309894	ID=MsG0880046189.01.T01:exon:27590;Parent=MsG0880046189.01.T01
Chr8	exon	70310927	70311239	70310927	ID=MsG0880046189.01.T01:exon:27591;Parent=MsG0880046189.01.T01
Chr8	five_prime_UTR	70303934	70304090	70303934	ID=MsG0880046189.01.T01:five_prime_utr;Parent=MsG0880046189.01.T01
Chr8	CDS	70304091	70304271	70304091	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70304349	70304476	70304349	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70304734	70304830	70304734	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70304963	70305063	70304963	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70306059	70306135	70306059	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70306915	70306966	70306915	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70307378	70307488	70307378	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70307562	70307659	70307562	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70309352	70309491	70309352	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70309894	70310209	70309894	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01
Chr8	CDS	70310927	70311239	70310927	ID=MsG0880046189.01.T01:cds;Parent=MsG0880046189.01.T01

Gene Sequence

>MsG0880046189.01.T01

ATGTTAACTGCTACCAAAGTAGCCTTCACTTTAACACCCCCTCGTCCATGTTCTGCACCCCAAACCCCCTTCATTCCATTCTCTTTTTCTTCTGTTTCTCGTCCTCACTTCAATTCCCGCCACGTATGCCTTCGCCGCAGATTACTCCTACTTTCGCCTAAAGCCACTGCAGATCAACAAGGGAATGCTGGAGATTTCGACGGAGATGCTGTTATTGATACTAATGTCCTCCCATATTGTAGCATAGATCAAAAAAAGGAGAAGAAATCCGTTGGTGAACTTGAGCAAGAATTTCTTCAAGCACTCCAATCATTCTATTATGAGGGAAAGGCTATTATGTCAAATGAAGAATTTGATAATCTCAAGGAGGAACTTATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCGGATGAACAAAAATTTCTTGAAGCTTCTATGGCTTATGTATCTGGAAATCCAATTTTGAGCGACAAAGAGTATGATAAGTTGAAACTGAATCTAAAGGTTTACAGTGACCTGTCTGTTGACTATTTCAAGATGTTCCTGCTGAACGTCCCAGCCACTGTGGTTGCATTAGGATTGTTCTTCTTCCTTGATGATATAACTGGATTTGAGATCACTTATTTGCTAGAGCTGCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCGGCTGTTCCCCTCATTGTATATCTAGCTCTATCACTAACAAGGGCCATTATCAAAGATTTTGTGATTTTAAAGGGTCCCTGTCCAAACTGTGGAACTGAAAATACCTCCTTCTTTGGGACTATACTGTCAATTTCAAGTGGTGGTTCCAACAACAAAGTCAAATGCTCTGACTTCTTGGTTACAATTACAATTACACTGATGCTCACAATCATTGCAAAGCCAGCTTTAGTAGCGGGCACATTTCAACCCAGTTCATGGACTCTTGCACATGCCACATTTTATGGCGATGAGACAGCTTCTGCCACCATGGGAGGAGCATGTGGGTATGGAAATTTGTTTCTGAATGGTTATGGGACAGACACAGCAGCATTGAGTTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGTGTTCAATCAAGTGCATGTAACACCAATGTTCCTTACACTACAGTCACTGCCACAAATATTTGCCCTCCTAATTGGTCTCAGGCATCCGATTACGGTGGATGGTGCAACCCACCACGTTCACATTTTGACATGTCTAAGCCTGCCTTCATGAAAATTGCACAGTGGAAGGCCGGTATCGTCCCTGTTATGTATCGCAGAGTGCCTTGCATGAGGAGTGAAGGATTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGTGATATAGCAAACATGTGGGTTAAAGGAAGTAGAACAGGATGGATTAGCATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACACTTGGTGGCCAAACTCTTTCTTTCAAGATTACTTCTTACACAACCAAAGAAACTATAATAGCTTGGAATGTTGCTCCTTCCAACTGGGCTGCTGGATTAACCTATTCCACACATGTCAATTTTCATTGA

Protein sequence

>MsG0880046189.01.T01

MLTATKVAFTLTPPRPCSAPQTPFIPFSFSSVSRPHFNSRHVCLRRRLLLLSPKATADQQGNAGDFDGDAVIDTNVLPYCSIDQKKEKKSVGELEQEFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPILSDKEYDKLKLNLKVYSDLSVDYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLALSLTRAIIKDFVILKGPCPNCGTENTSFFGTILSISSGGSNNKVKCSDFLVTITITLMLTIIAKPALVAGTFQPSSWTLAHATFYGDETASATMGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNTNVPYTTVTATNICPPNWSQASDYGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVPCMRSEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLGGQTLSFKITSYTTKETIIAWNVAPSNWAAGLTYSTHVNFH*