AlfalfaGEDB | MsG0380011702.01

M. sativa cultivar ZhongmuNo.1 / MsG0380011702.01

KEGG: -
GO: GO:0004553 GO:0005975
PFAM: PF00150

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011702.01.T01	XP_003598253.1	85.083	181	19	1	23	195	162	342	4.99E-103	315

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011702.01.T01	Q5B5X8	41.791	201	101	5	7	194	30	227	3.95E-41	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011702.01.T01	G7IYK7	85.083	181	19	1	23	195	162	342	2.38e-103	315

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000147.01	MsG0380011702.01	0.814319	1.636885e-51	1.094843e-48
MsG0180000148.01	MsG0380011702.01	0.816945	4.256473e-52	3.058479e-49
MsG0180000899.01	MsG0380011702.01	0.813429	2.571393e-51	1.678811e-48
MsG0180001029.01	MsG0380011702.01	0.814494	1.497663e-51	1.006483e-48
MsG0180001513.01	MsG0380011702.01	0.837268	5.747274e-57	7.425736e-54
MsG0180001515.01	MsG0380011702.01	0.842336	2.751376e-58	4.158521e-55
MsG0180001533.01	MsG0380011702.01	0.819914	9.040861e-53	7.050672e-50
MsG0180001797.01	MsG0380011702.01	0.802206	6.263798e-49	3.050076e-46
MsG0180003320.01	MsG0380011702.01	0.810295	1.237778e-50	7.432733e-48
MsG0180003322.01	MsG0380011702.01	0.802924	4.453838e-49	2.208868e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011702.01.T01	MTR_3g009020	85.083	181	19	1	23	195	162	342	6.05e-107	315
MsG0380011702.01.T01	MTR_3g009020	72.500	40	11	0	1	40	1	40	1.29e-11	63.2
MsG0380011702.01.T01	MTR_3g009030	82.022	178	24	1	23	192	186	363	4.04e-101	301
MsG0380011702.01.T01	MTR_3g008960	76.271	177	33	2	23	191	179	354	3.57e-90	273
MsG0380011702.01.T01	MTR_3g009010	75.706	177	34	2	23	191	252	427	5.38e-89	271
MsG0380011702.01.T01	MTR_8g091310	65.746	181	52	2	23	193	192	372	1.85e-80	248
MsG0380011702.01.T01	MTR_5g062190	56.284	183	68	2	23	193	190	372	2.40e-68	217
MsG0380011702.01.T01	MTR_5g062290	53.226	186	75	3	23	196	188	373	7.79e-65	207
MsG0380011702.01.T01	MTR_3g086750	51.675	209	82	6	5	194	163	371	2.14e-60	197
MsG0380011702.01.T01	MTR_5g061980	56.471	85	36	1	23	107	109	192	1.86e-29	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 58 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATTAGATGCAGTG+AGG	0.737558	3:-3776969	MsG0380011702.01.T01:CDS
AAAATGGCAATGAACATAGT+GGG	0.608116	3:-3775932	MsG0380011702.01.T01:CDS
AAGACTTGAGGGGCTCTATC+TGG	0.327001	3:+3777145	None:intergenic
AAGAGATGGATATATAGAAT+GGG	0.434894	3:-3775907	MsG0380011702.01.T01:CDS
AAGCTGTGAATCTAGGAAAC+TGG	0.408682	3:-3778715	MsG0380011702.01.T01:CDS
AATCAATCACAGCGACTGTC+TGG	0.357329	3:+3775869	None:intergenic
AATTGTCAACAAAGATCTCT+TGG	0.500179	3:-3778650	MsG0380011702.01.T01:intron
ACAAAAGGCTTAGGTGGATT+TGG	0.314130	3:+3776916	None:intergenic
ACTGGCTTGTGGCTGAGGGG+TGG	0.464834	3:-3778697	MsG0380011702.01.T01:CDS
ACTTGACAATGCTTTCACAT+GGG	0.683824	3:-3776875	MsG0380011702.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTCCAAATTCAATGG+GGG	-	Chr3:3777897-3777916	MsG0380011702.01.T01:intron	30.0%
AAAATGGCAATGAACATAGT+GGG	-	Chr3:3778191-3778210	MsG0380011702.01.T01:intron	30.0%
AAATATCTTTGTGCTGAAGA+TGG	-	Chr3:3775647-3775666	MsG0380011702.01.T01:intron	30.0%
AAGATCTAATCCCAATAACA+CGG	+	Chr3:3776563-3776582	None:intergenic	30.0%
AATATCTTTGTGCTGAAGAT+GGG	-	Chr3:3775648-3775667	MsG0380011702.01.T01:intron	30.0%
AATTGTCAACAAAGATCTCT+TGG	-	Chr3:3775473-3775492	MsG0380011702.01.T01:CDS	30.0%
ACATGCATGAATTGAATTTG+TGG	-	Chr3:3778597-3778616	MsG0380011702.01.T01:intron	30.0%
AGAGATGGATATATAGAATG+GGG	-	Chr3:3778217-3778236	MsG0380011702.01.T01:intron	30.0%
AGCTCAAAACTAAGATGAAA+TGG	+	Chr3:3777070-3777089	None:intergenic	30.0%
ATGCATTAGGTTAAAAGATG+AGG	+	Chr3:3777873-3777892	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	3775389	3778756	3775389	ID=MsG0380011702.01;Name=MsG0380011702.01
Chr3	mRNA	3775389	3778756	3775389	ID=MsG0380011702.01.T01;Parent=MsG0380011702.01;Name=MsG0380011702.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|0\|0\|1\|1\|1\|5\|0\|196
Chr3	exon	3778651	3778756	3778651	ID=MsG0380011702.01.T01:exon:1925;Parent=MsG0380011702.01.T01
Chr3	exon	3777141	3777196	3777141	ID=MsG0380011702.01.T01:exon:1924;Parent=MsG0380011702.01.T01
Chr3	exon	3776871	3777040	3776871	ID=MsG0380011702.01.T01:exon:1923;Parent=MsG0380011702.01.T01
Chr3	exon	3775879	3776004	3775879	ID=MsG0380011702.01.T01:exon:1922;Parent=MsG0380011702.01.T01
Chr3	exon	3775389	3775521	3775389	ID=MsG0380011702.01.T01:exon:1921;Parent=MsG0380011702.01.T01
Chr3	CDS	3778651	3778756	3778651	ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3	CDS	3777141	3777196	3777141	ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3	CDS	3776871	3777040	3776871	ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3	CDS	3775879	3776004	3775879	ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3	CDS	3775389	3775521	3775389	ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01

Gene Sequence

>MsG0380011702.01.T01

ATGGGAAATCCGCCATACAAAGCTGTGAATCTAGGAAACTGGCTTGTGGCTGAGGGGTGGATGAAACCTTCTCTCTTTGAAGGGAATTGTCAACAAAGATCTCTTGGAGAGTACCAACTTACTAATGGTTATGGTCCAGATAGAGCCCCTCAAGTCTTAAGGGACCATTGGAATTCATACATAACTGAAGATGATTTCAGATTCATGTCACAAAATGGATTAGATGCAGTGAGGATACCTGTTGGATGGTGGATAGCCTATGATCCAAATCCACCTAAGCCTTTTGTTGGAGGATCTTTGGCAGCACTTGACAATGCTTTCACATGGGCACAAAACCATGGGATGAAAGTGATTGTGGACTTGCATGCAGTTGAAGGTTCTCAAAATGGCAATGAACATAGTGGGACAAGAGATGGATATATAGAATGGGGTGATTCTTACATACCCAGACAGTCGCTGTATGGTAATAAACCAAGTTTAGGAGGAATAGAGCTGATGAATGAGCCACAAGGTGTCAATCTTGATAGTCTAAAGAAGTATTACAAGGCAGCTTATGATGCTGTGAGAAAATACAACTCAGAGGTTATGTGA

Protein sequence

>MsG0380011702.01.T01

MGNPPYKAVNLGNWLVAEGWMKPSLFEGNCQQRSLGEYQLTNGYGPDRAPQVLRDHWNSYITEDDFRFMSQNGLDAVRIPVGWWIAYDPNPPKPFVGGSLAALDNAFTWAQNHGMKVIVDLHAVEGSQNGNEHSGTRDGYIEWGDSYIPRQSLYGNKPSLGGIELMNEPQGVNLDSLKKYYKAAYDAVRKYNSEVM*