AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011702.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011702.01.T01 MTR_3g009020 85.083 181 19 1 23 195 162 342 6.05e-107 315
MsG0380011702.01.T01 MTR_3g009020 72.500 40 11 0 1 40 1 40 1.29e-11 63.2
MsG0380011702.01.T01 MTR_3g009030 82.022 178 24 1 23 192 186 363 4.04e-101 301
MsG0380011702.01.T01 MTR_3g008960 76.271 177 33 2 23 191 179 354 3.57e-90 273
MsG0380011702.01.T01 MTR_3g009010 75.706 177 34 2 23 191 252 427 5.38e-89 271
MsG0380011702.01.T01 MTR_8g091310 65.746 181 52 2 23 193 192 372 1.85e-80 248
MsG0380011702.01.T01 MTR_5g062190 56.284 183 68 2 23 193 190 372 2.40e-68 217
MsG0380011702.01.T01 MTR_5g062290 53.226 186 75 3 23 196 188 373 7.79e-65 207
MsG0380011702.01.T01 MTR_3g086750 51.675 209 82 6 5 194 163 371 2.14e-60 197
MsG0380011702.01.T01 MTR_5g061980 56.471 85 36 1 23 107 109 192 1.86e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGATTCATGTCACAAAA+TGG 0.258732 3:-3776985 MsG0380011702.01.T01:CDS
ACAAAAGGCTTAGGTGGATT+TGG 0.314130 3:+3776916 None:intergenic
AAGACTTGAGGGGCTCTATC+TGG 0.327001 3:+3777145 None:intergenic
AATCAATCACAGCGACTGTC+TGG 0.357329 3:+3775869 None:intergenic
GCAGTTGAAGGTTCTCAAAA+TGG 0.365609 3:-3775948 MsG0380011702.01.T01:CDS
TATGGTAATAAACCAAGTTT+AGG 0.379061 3:-3775498 MsG0380011702.01.T01:CDS
CTTAGGTGGATTTGGATCAT+AGG 0.380775 3:+3776924 None:intergenic
CAAAATGGCAATGAACATAG+TGG 0.392126 3:-3775933 MsG0380011702.01.T01:CDS
ATAGAGCCCCTCAAGTCTTA+AGG 0.401028 3:-3777141 MsG0380011702.01.T01:CDS
CCATACAAAGCTGTGAATCT+AGG 0.407481 3:-3778722 MsG0380011702.01.T01:CDS
AAGCTGTGAATCTAGGAAAC+TGG 0.408682 3:-3778715 MsG0380011702.01.T01:CDS
CAAGAGATGGATATATAGAA+TGG 0.417101 3:-3775908 MsG0380011702.01.T01:CDS
CCTAGATTCACAGCTTTGTA+TGG 0.417981 3:+3778722 None:intergenic
ATGAAACCTTCTCTCTTTGA+AGG 0.434428 3:-3778674 MsG0380011702.01.T01:CDS
AAGAGATGGATATATAGAAT+GGG 0.434894 3:-3775907 MsG0380011702.01.T01:CDS
TACCAACTTACTAATGGTTA+TGG 0.439502 3:-3777169 MsG0380011702.01.T01:CDS
TGTTTGCTTTGCAGGACCAT+TGG 0.444914 3:-3777032 MsG0380011702.01.T01:intron
AGCTCTATTCCTCCTAAACT+TGG 0.449256 3:+3775486 None:intergenic
TAGAGCCCCTCAAGTCTTAA+GGG 0.451932 3:-3777140 MsG0380011702.01.T01:intron
AGGAAACTGGCTTGTGGCTG+AGG 0.454412 3:-3778702 MsG0380011702.01.T01:CDS
TTCTCACCCTTAAGACTTGA+GGG 0.457721 3:+3777134 None:intergenic
ACTGGCTTGTGGCTGAGGGG+TGG 0.464834 3:-3778697 MsG0380011702.01.T01:CDS
GCCAAAGATCCTCCAACAAA+AGG 0.472760 3:+3776901 None:intergenic
GTGGACTTGCATGCAGTTGA+AGG 0.475672 3:-3775960 MsG0380011702.01.T01:CDS
TAGGCTATCCACCATCCAAC+AGG 0.491070 3:+3776943 None:intergenic
CCACAATCACTTTCATCCCA+TGG 0.493223 3:+3775979 None:intergenic
GGAAACTGGCTTGTGGCTGA+GGG 0.494595 3:-3778701 MsG0380011702.01.T01:CDS
GATCCTCCAACAAAAGGCTT+AGG 0.499893 3:+3776907 None:intergenic
AATTGTCAACAAAGATCTCT+TGG 0.500179 3:-3778650 MsG0380011702.01.T01:intron
CACTTGACAATGCTTTCACA+TGG 0.508127 3:-3776876 MsG0380011702.01.T01:CDS
GGAGAGTACCAACTTACTAA+TGG 0.515314 3:-3777175 MsG0380011702.01.T01:CDS
GACCATAACCATTAGTAAGT+TGG 0.516537 3:+3777167 None:intergenic
CAATTCCCTTCAAAGAGAGA+AGG 0.530886 3:+3778668 None:intergenic
GGTAATAAACCAAGTTTAGG+AGG 0.535992 3:-3775495 MsG0380011702.01.T01:CDS
GAACATAGTGGGACAAGAGA+TGG 0.543354 3:-3775921 MsG0380011702.01.T01:CDS
TGAAACCTTCTCTCTTTGAA+GGG 0.551163 3:-3778673 MsG0380011702.01.T01:CDS
CCATGGGATGAAAGTGATTG+TGG 0.555733 3:-3775979 MsG0380011702.01.T01:CDS
ATTCTCACCCTTAAGACTTG+AGG 0.559378 3:+3777133 None:intergenic
CAGTTATGTATGAATTCCAA+TGG 0.561323 3:+3777016 None:intergenic
CCTCCAACAAAAGGCTTAGG+TGG 0.562536 3:+3776910 None:intergenic
TTTGTAACTTACAGAAACCA+TGG 0.569044 3:-3775996 MsG0380011702.01.T01:intron
ATCAATCACAGCGACTGTCT+GGG 0.574270 3:+3775870 None:intergenic
AGATTCACAGCTTTGTATGG+CGG 0.583970 3:+3778725 None:intergenic
GAAACTGGCTTGTGGCTGAG+GGG 0.589775 3:-3778700 MsG0380011702.01.T01:CDS
AAAATGGCAATGAACATAGT+GGG 0.608116 3:-3775932 MsG0380011702.01.T01:CDS
TTGTAACTTACAGAAACCAT+GGG 0.612512 3:-3775995 MsG0380011702.01.T01:intron
CTATCAAGATTGACACCTTG+TGG 0.620469 3:+3775453 None:intergenic
CAGTGAGGATACCTGTTGGA+TGG 0.625186 3:-3776954 MsG0380011702.01.T01:CDS
TAGTCTAAAGAAGTATTACA+AGG 0.625277 3:-3775433 MsG0380011702.01.T01:CDS
AGAGATGGATATATAGAATG+GGG 0.625469 3:-3775906 MsG0380011702.01.T01:CDS
TGAGGATACCTGTTGGATGG+TGG 0.641335 3:-3776951 MsG0380011702.01.T01:CDS
TCTCACCCTTAAGACTTGAG+GGG 0.663932 3:+3777135 None:intergenic
GAATCTAGGAAACTGGCTTG+TGG 0.668150 3:-3778708 MsG0380011702.01.T01:CDS
GATGCAGTGAGGATACCTGT+TGG 0.680380 3:-3776958 MsG0380011702.01.T01:CDS
ACTTGACAATGCTTTCACAT+GGG 0.683824 3:-3776875 MsG0380011702.01.T01:CDS
TGTGAGAAAATACAACTCAG+AGG 0.716496 3:-3775397 MsG0380011702.01.T01:CDS
GAGCTGATGAATGAGCCACA+AGG 0.730017 3:-3775468 MsG0380011702.01.T01:CDS
AAAATGGATTAGATGCAGTG+AGG 0.737558 3:-3776969 MsG0380011702.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGTTACAATTTAATTAA+AGG + Chr3:3778030-3778049 None:intergenic 10.0%
!! TTCTATTTATAAAGAAATTT+AGG + Chr3:3775849-3775868 None:intergenic 10.0%
!!! ACTTTTTAAAATAGAATAAT+TGG + Chr3:3777562-3777581 None:intergenic 10.0%
!!! ATATCTTTTATAAATATAAC+GGG + Chr3:3775763-3775782 None:intergenic 10.0%
!!! TATATTTTAGATTTTTGAAA+TGG + Chr3:3777359-3777378 None:intergenic 10.0%
!!! TCTGAAATTTTAAAAAATTT+GGG + Chr3:3777384-3777403 None:intergenic 10.0%
!!! TTCTGAAATTTTAAAAAATT+TGG + Chr3:3777385-3777404 None:intergenic 10.0%
!! AAATAATTAGAACTTACAAA+GGG + Chr3:3775906-3775925 None:intergenic 15.0%
!! AATGTAATAAAGAACAATTT+AGG + Chr3:3776289-3776308 None:intergenic 15.0%
!! AATTTGAACTTCTTAATATT+AGG + Chr3:3775551-3775570 None:intergenic 15.0%
!! AGATAATTTATATGATTTGA+TGG + Chr3:3776437-3776456 None:intergenic 15.0%
!! GATTTCAAATTTAAAAATGT+CGG - Chr3:3777954-3777973 MsG0380011702.01.T01:intron 15.0%
!! GTTATGTTAAATTAAAAATG+AGG + Chr3:3776632-3776651 None:intergenic 15.0%
!!! TAAAGGTTTAAATAAACTTT+TGG + Chr3:3778013-3778032 None:intergenic 15.0%
!!! TGTTTTGAAACTTTAAAAAT+TGG - Chr3:3777923-3777942 MsG0380011702.01.T01:intron 15.0%
!! AAAAACATAATAACCGATAT+AGG + Chr3:3776261-3776280 None:intergenic 20.0%
!! AAGAAACATTTCAGATTATA+AGG - Chr3:3776060-3776079 MsG0380011702.01.T01:intron 20.0%
!! ATAAAAAACTCCAAATTCAA+TGG - Chr3:3777894-3777913 MsG0380011702.01.T01:intron 20.0%
!! ATCTAATTTCTTCTCTATAT+TGG - Chr3:3778308-3778327 MsG0380011702.01.T01:intron 20.0%
!! CAAATAATTAGAACTTACAA+AGG + Chr3:3775907-3775926 None:intergenic 20.0%
!! CATGTATAATTCAATTACTT+GGG + Chr3:3778582-3778601 None:intergenic 20.0%
!! CTGGTTAAAGAAATTATAAA+AGG + Chr3:3777794-3777813 None:intergenic 20.0%
!! TAAAAAACTCCAAATTCAAT+GGG - Chr3:3777895-3777914 MsG0380011702.01.T01:intron 20.0%
!! TAAAAAGTAAAAACTACCAT+CGG + Chr3:3775872-3775891 None:intergenic 20.0%
!! TAATCCATTTCTAATCATTT+GGG - Chr3:3778500-3778519 MsG0380011702.01.T01:intron 20.0%
!! TAATGTATCTGGTTAAAAAT+TGG + Chr3:3775815-3775834 None:intergenic 20.0%
!! TATCAAATATCATATATTCC+TGG + Chr3:3778548-3778567 None:intergenic 20.0%
!! TATTGGAATTTAAGTATAAG+TGG - Chr3:3778325-3778344 MsG0380011702.01.T01:intron 20.0%
!! TCACAAGTGATATTATAAAA+AGG + Chr3:3777843-3777862 None:intergenic 20.0%
!! TTAATCCATTTCTAATCATT+TGG - Chr3:3778499-3778518 MsG0380011702.01.T01:intron 20.0%
!!! AATGCTCTAAATAAAATTGA+GGG + Chr3:3775506-3775525 None:intergenic 20.0%
!!! ACATACACACAATTATTTTT+TGG + Chr3:3775578-3775597 None:intergenic 20.0%
!!! GTTTGATCATTTTTCTAAAT+TGG + Chr3:3776722-3776741 None:intergenic 20.0%
!!! TAATTGATAATATGTGAAAG+AGG + Chr3:3778474-3778493 None:intergenic 20.0%
!!! TTTGAAACTTTAAAAATTGG+AGG - Chr3:3777926-3777945 MsG0380011702.01.T01:intron 20.0%
!!! TTTTAATCAAGTTATGTACT+CGG - Chr3:3776179-3776198 MsG0380011702.01.T01:intron 20.0%
! AAAAAACTCCAAATTCAATG+GGG - Chr3:3777896-3777915 MsG0380011702.01.T01:intron 25.0%
! AAATTATAAAAGGACTCTCT+TGG + Chr3:3777784-3777803 None:intergenic 25.0%
! AAATTATCAAGGCACAAATT+GGG - Chr3:3776876-3776895 MsG0380011702.01.T01:CDS 25.0%
! AAGAGATGGATATATAGAAT+GGG - Chr3:3778216-3778235 MsG0380011702.01.T01:intron 25.0%
! ATTCGAATCAAATCATCAAA+TGG - Chr3:3776104-3776123 MsG0380011702.01.T01:intron 25.0%
! ATTGAGCCTTCATAAATATA+TGG + Chr3:3776837-3776856 None:intergenic 25.0%
! GAAAAAAGATGTTATGACAT+TGG + Chr3:3776509-3776528 None:intergenic 25.0%
! GAATTGTTGAAAATCTTTGT+TGG - Chr3:3777040-3777059 MsG0380011702.01.T01:intron 25.0%
! GCATGTATAATTCAATTACT+TGG + Chr3:3778583-3778602 None:intergenic 25.0%
! GTAATAAAGAACAATTTAGG+TGG + Chr3:3776286-3776305 None:intergenic 25.0%
! GTGTTCAACAAAAAATTTGT+GGG - Chr3:3775978-3775997 MsG0380011702.01.T01:CDS 25.0%
! TATGGTAATAAACCAAGTTT+AGG - Chr3:3778625-3778644 MsG0380011702.01.T01:intron 25.0%
! TCAACAAAAATTGATGTATC+TGG - Chr3:3775788-3775807 MsG0380011702.01.T01:intron 25.0%
! TCAACAAAAGTTAATGTATC+TGG + Chr3:3775826-3775845 None:intergenic 25.0%
! TGTTCAACAAAAAATTTGTG+GGG - Chr3:3775979-3775998 MsG0380011702.01.T01:CDS 25.0%
! TTCTTTATAAATAGAACCGA+TGG - Chr3:3775853-3775872 MsG0380011702.01.T01:intron 25.0%
! TTGAACTTCTTAATATTAGG+AGG + Chr3:3775548-3775567 None:intergenic 25.0%
!! AACTTTTTAACAAGTGTGTT+AGG + Chr3:3777461-3777480 None:intergenic 25.0%
!! ACTTTTTAACAAGTGTGTTA+GGG + Chr3:3777460-3777479 None:intergenic 25.0%
!! GAATGCTCTAAATAAAATTG+AGG + Chr3:3775507-3775526 None:intergenic 25.0%
!! GTTTGATCATTTTCCTATAT+CGG - Chr3:3776245-3776264 MsG0380011702.01.T01:intron 25.0%
!! TCAAGATTTAGATGTACTTT+TGG - Chr3:3777298-3777317 MsG0380011702.01.T01:intron 25.0%
!!! ATCAAATGGTTTATTTTTGC+AGG - Chr3:3776118-3776137 MsG0380011702.01.T01:intron 25.0%
!!! ATGATTTGATTCGAATTTTG+AGG + Chr3:3776100-3776119 None:intergenic 25.0%
!!! TACACACAATTATTTTTTGG+TGG + Chr3:3775575-3775594 None:intergenic 25.0%
!!! TAGTCTAAAGAAGTATTACA+AGG - Chr3:3778690-3778709 MsG0380011702.01.T01:CDS 25.0%
!!! TGATTTGATTCGAATTTTGA+GGG + Chr3:3776099-3776118 None:intergenic 25.0%
AAAAACTCCAAATTCAATGG+GGG - Chr3:3777897-3777916 MsG0380011702.01.T01:intron 30.0%
AAAATGGCAATGAACATAGT+GGG - Chr3:3778191-3778210 MsG0380011702.01.T01:intron 30.0%
AAATATCTTTGTGCTGAAGA+TGG - Chr3:3775647-3775666 MsG0380011702.01.T01:intron 30.0%
AAGATCTAATCCCAATAACA+CGG + Chr3:3776563-3776582 None:intergenic 30.0%
AATATCTTTGTGCTGAAGAT+GGG - Chr3:3775648-3775667 MsG0380011702.01.T01:intron 30.0%
AATTGTCAACAAAGATCTCT+TGG - Chr3:3775473-3775492 MsG0380011702.01.T01:CDS 30.0%
ACATGCATGAATTGAATTTG+TGG - Chr3:3778597-3778616 MsG0380011702.01.T01:intron 30.0%
AGAGATGGATATATAGAATG+GGG - Chr3:3778217-3778236 MsG0380011702.01.T01:intron 30.0%
AGCTCAAAACTAAGATGAAA+TGG + Chr3:3777070-3777089 None:intergenic 30.0%
ATGCATTAGGTTAAAAGATG+AGG + Chr3:3777873-3777892 None:intergenic 30.0%
ATTGTCATATGAAAAACCGA+TGG + Chr3:3776913-3776932 None:intergenic 30.0%
CAAATTATCAAGGCACAAAT+TGG - Chr3:3776875-3776894 MsG0380011702.01.T01:CDS 30.0%
CAAGAGATGGATATATAGAA+TGG - Chr3:3778215-3778234 MsG0380011702.01.T01:intron 30.0%
CAGTTATGTATGAATTCCAA+TGG + Chr3:3777110-3777129 None:intergenic 30.0%
CTCTGACCATATATTTATGA+AGG - Chr3:3776828-3776847 MsG0380011702.01.T01:intron 30.0%
CTTCATAAATATATGGTCAG+AGG + Chr3:3776830-3776849 None:intergenic 30.0%
GACAATTGTAAACACATTAC+AGG - Chr3:3776927-3776946 MsG0380011702.01.T01:CDS 30.0%
GGTGTTCAACAAAAAATTTG+TGG - Chr3:3775977-3775996 MsG0380011702.01.T01:CDS 30.0%
GTTAGTGCAATTGAAAACAT+CGG - Chr3:3776345-3776364 MsG0380011702.01.T01:intron 30.0%
TAATTAGAACTTACAAAGGG+TGG + Chr3:3775903-3775922 None:intergenic 30.0%
TACCAACTTACTAATGGTTA+TGG - Chr3:3776954-3776973 MsG0380011702.01.T01:CDS 30.0%
TAGTCCCAAATGATTAGAAA+TGG + Chr3:3778507-3778526 None:intergenic 30.0%
TGAAATGTTTCTTTGTTGCT+AGG + Chr3:3776053-3776072 None:intergenic 30.0%
TGGAATTTAAGTATAAGTGG+TGG - Chr3:3778328-3778347 MsG0380011702.01.T01:intron 30.0%
TTAGTGACAGCAAATTATCA+AGG - Chr3:3776865-3776884 MsG0380011702.01.T01:intron 30.0%
TTAGTGCAATTGAAAACATC+GGG - Chr3:3776346-3776365 MsG0380011702.01.T01:intron 30.0%
TTCAGATTCATGTCACAAAA+TGG - Chr3:3777138-3777157 MsG0380011702.01.T01:intron 30.0%
TTGTAACTTACAGAAACCAT+GGG - Chr3:3778128-3778147 MsG0380011702.01.T01:intron 30.0%
TTTGTAACTTACAGAAACCA+TGG - Chr3:3778127-3778146 MsG0380011702.01.T01:intron 30.0%
TTTGTGGGGTTAAATACTAT+AGG - Chr3:3775993-3776012 MsG0380011702.01.T01:intron 30.0%
! AATCCAAATTGATTAGCTAG+AGG + Chr3:3776159-3776178 None:intergenic 30.0%
! ATATTTTCTGACCAATGAGT+TGG - Chr3:3777637-3777656 MsG0380011702.01.T01:intron 30.0%
! CTATTTCCCACCTTTAAAAA+CGG - Chr3:3776323-3776342 MsG0380011702.01.T01:intron 30.0%
!! ATTGCACTAACCGTTTTTAA+AGG + Chr3:3776336-3776355 None:intergenic 30.0%
!! ATTTGATGGATGTTTTCTGA+AGG + Chr3:3776423-3776442 None:intergenic 30.0%
!! GATTTGATTCGAATTTTGAG+GGG + Chr3:3776098-3776117 None:intergenic 30.0%
!! GTTTTCTGAAGGGTTATTAT+GGG + Chr3:3776412-3776431 None:intergenic 30.0%
!! TGTTTTCTGAAGGGTTATTA+TGG + Chr3:3776413-3776432 None:intergenic 30.0%
!! TTGTGTGTATGTGTTGATTT+AGG - Chr3:3775586-3775605 MsG0380011702.01.T01:intron 30.0%
!! TTTGATGGATGTTTTCTGAA+GGG + Chr3:3776422-3776441 None:intergenic 30.0%
!!! GGAGTTTTTTATGATGCATT+AGG + Chr3:3777886-3777905 None:intergenic 30.0%
AAAACTCCAAATTCAATGGG+GGG - Chr3:3777898-3777917 MsG0380011702.01.T01:intron 35.0%
AATCAACTTGACCGTGTTAT+TGG - Chr3:3776549-3776568 MsG0380011702.01.T01:intron 35.0%
ACTTGACAATGCTTTCACAT+GGG - Chr3:3777248-3777267 MsG0380011702.01.T01:intron 35.0%
AGATATTAACAAGTGCCTCT+GGG + Chr3:3777820-3777839 None:intergenic 35.0%
ATATCTTTGTGCTGAAGATG+GGG - Chr3:3775649-3775668 MsG0380011702.01.T01:intron 35.0%
ATGAAACCTTCTCTCTTTGA+AGG - Chr3:3775449-3775468 MsG0380011702.01.T01:CDS 35.0%
ATGACATTGGATCGTATATG+TGG + Chr3:3776496-3776515 None:intergenic 35.0%
ATTGAATTTGTGGACAGGTA+TGG - Chr3:3778607-3778626 MsG0380011702.01.T01:intron 35.0%
CAAAATGGCAATGAACATAG+TGG - Chr3:3778190-3778209 MsG0380011702.01.T01:intron 35.0%
CATCCTCTAGCTAATCAATT+TGG - Chr3:3776153-3776172 MsG0380011702.01.T01:intron 35.0%
CATGAATTGAATTTGTGGAC+AGG - Chr3:3778602-3778621 MsG0380011702.01.T01:intron 35.0%
CATTAGGTTAAAAGATGAGG+TGG + Chr3:3777870-3777889 None:intergenic 35.0%
CTAAGCAGCAAATTCAATGA+TGG + Chr3:3777414-3777433 None:intergenic 35.0%
CTTGCTAACAAGTGTCTTAA+GGG + Chr3:3777609-3777628 None:intergenic 35.0%
GACCATAACCATTAGTAAGT+TGG + Chr3:3776959-3776978 None:intergenic 35.0%
GGTAATAAACCAAGTTTAGG+AGG - Chr3:3778628-3778647 MsG0380011702.01.T01:intron 35.0%
GTTGAACACCCTAAAATTGA+AGG + Chr3:3775967-3775986 None:intergenic 35.0%
TAAAGGTGGGAAATAGACTA+CGG + Chr3:3776319-3776338 None:intergenic 35.0%
TCTTGCTAACAAGTGTCTTA+AGG + Chr3:3777610-3777629 None:intergenic 35.0%
TGAAACCTTCTCTCTTTGAA+GGG - Chr3:3775450-3775469 MsG0380011702.01.T01:CDS 35.0%
TGTGAGAAAATACAACTCAG+AGG - Chr3:3778726-3778745 MsG0380011702.01.T01:CDS 35.0%
! ACGACTCATCCTTCAATTTT+AGG - Chr3:3775955-3775974 MsG0380011702.01.T01:CDS 35.0%
! ATCAACTTGACCGTGTTATT+GGG - Chr3:3776550-3776569 MsG0380011702.01.T01:intron 35.0%
! CAAATTGATTAGCTAGAGGA+TGG + Chr3:3776155-3776174 None:intergenic 35.0%
! CGACTCATCCTTCAATTTTA+GGG - Chr3:3775956-3775975 MsG0380011702.01.T01:CDS 35.0%
! GTGATTGATTCTTAGCACAA+AGG - Chr3:3778267-3778286 MsG0380011702.01.T01:intron 35.0%
! TTTTCACTTGCAAAGTAGCT+TGG - Chr3:3776524-3776543 MsG0380011702.01.T01:intron 35.0%
!! AAAATGGATTAGATGCAGTG+AGG - Chr3:3777154-3777173 MsG0380011702.01.T01:CDS 35.0%
!! CACTAACCGTTTTTAAAGGT+GGG + Chr3:3776332-3776351 None:intergenic 35.0%
!! CATTAATTTGCAGCTTTGGA+GGG - Chr3:3775929-3775948 MsG0380011702.01.T01:CDS 35.0%
!! GTGTATGTGTTGATTTAGGA+TGG - Chr3:3775590-3775609 MsG0380011702.01.T01:intron 35.0%
!! TCATTAATTTGCAGCTTTGG+AGG - Chr3:3775928-3775947 MsG0380011702.01.T01:CDS 35.0%
!! TGCTCATTAATTTGCAGCTT+TGG - Chr3:3775925-3775944 MsG0380011702.01.T01:CDS 35.0%
AACATTCCCCCCATTGAATT+TGG + Chr3:3777907-3777926 None:intergenic 40.0%
AAGCTGTGAATCTAGGAAAC+TGG - Chr3:3775408-3775427 MsG0380011702.01.T01:CDS 40.0%
AGCTCTATTCCTCCTAAACT+TGG + Chr3:3778640-3778659 None:intergenic 40.0%
ATGGGAGACATATATTCTCC+CGG + Chr3:3776394-3776413 None:intergenic 40.0%
ATTCTCACCCTTAAGACTTG+AGG + Chr3:3776993-3777012 None:intergenic 40.0%
CAATTCCCTTCAAAGAGAGA+AGG + Chr3:3775458-3775477 None:intergenic 40.0%
CACTTGACAATGCTTTCACA+TGG - Chr3:3777247-3777266 MsG0380011702.01.T01:intron 40.0%
CCATACAAAGCTGTGAATCT+AGG - Chr3:3775401-3775420 MsG0380011702.01.T01:CDS 40.0%
CTATCAAGATTGACACCTTG+TGG + Chr3:3778673-3778692 None:intergenic 40.0%
GAGATATTAACAAGTGCCTC+TGG + Chr3:3777821-3777840 None:intergenic 40.0%
GATATTAACAAGTGCCTCTG+GGG + Chr3:3777819-3777838 None:intergenic 40.0%
GCAATGGACAAAGACCTTAA+TGG + Chr3:3776372-3776391 None:intergenic 40.0%
GCAGTTGAAGGTTCTCAAAA+TGG - Chr3:3778175-3778194 MsG0380011702.01.T01:intron 40.0%
GGGTTAAATACTATAGGAGG+AGG - Chr3:3775999-3776018 MsG0380011702.01.T01:intron 40.0%
GTGGGGTTAAATACTATAGG+AGG - Chr3:3775996-3776015 MsG0380011702.01.T01:intron 40.0%
TATCTTTGTGCTGAAGATGG+GGG - Chr3:3775650-3775669 MsG0380011702.01.T01:intron 40.0%
TCCACTCACACTTAAATTCC+AGG - Chr3:3778527-3778546 MsG0380011702.01.T01:intron 40.0%
TCCTGGAATTTAAGTGTGAG+TGG + Chr3:3778531-3778550 None:intergenic 40.0%
TCTGTGACTTTCCAACTCAT+TGG + Chr3:3777651-3777670 None:intergenic 40.0%
TGTCTTAATCGTTGCTGACA+GGG + Chr3:3776473-3776492 None:intergenic 40.0%
TTAAGGTCTTTGTCCATTGC+CGG - Chr3:3776372-3776391 MsG0380011702.01.T01:intron 40.0%
TTCTCACCCTTAAGACTTGA+GGG + Chr3:3776992-3777011 None:intergenic 40.0%
TTGAAAACATCGGGCCATTA+AGG - Chr3:3776355-3776374 MsG0380011702.01.T01:intron 40.0%
TTGAATGTTTCCCAACCAGA+AGG + Chr3:3775707-3775726 None:intergenic 40.0%
TTGGGATGACAATGATCCAT+CGG - Chr3:3776894-3776913 MsG0380011702.01.T01:CDS 40.0%
! AATCCACCTAAGCCTTTTGT+TGG - Chr3:3777210-3777229 MsG0380011702.01.T01:intron 40.0%
! ACAAAAGGCTTAGGTGGATT+TGG + Chr3:3777210-3777229 None:intergenic 40.0%
! AGATTCACAGCTTTGTATGG+CGG + Chr3:3775401-3775420 None:intergenic 40.0%
! AGTGGTGGTTAGTCACATAT+TGG - Chr3:3778343-3778362 MsG0380011702.01.T01:intron 40.0%
! CCTAGATTCACAGCTTTGTA+TGG + Chr3:3775404-3775423 None:intergenic 40.0%
! CTTAGGTGGATTTGGATCAT+AGG + Chr3:3777202-3777221 None:intergenic 40.0%
! CTTTTCTCGAATCACTGACA+TGG + Chr3:3776593-3776612 None:intergenic 40.0%
!! GCACTAACCGTTTTTAAAGG+TGG + Chr3:3776333-3776352 None:intergenic 40.0%
!! GGAGAGTACCAACTTACTAA+TGG - Chr3:3776948-3776967 MsG0380011702.01.T01:CDS 40.0%
!! TTGAGCTTTGTTTGCTTTGC+AGG - Chr3:3777083-3777102 MsG0380011702.01.T01:intron 40.0%
AATCAATCACAGCGACTGTC+TGG + Chr3:3778257-3778276 None:intergenic 45.0%
ATAGAGCCCCTCAAGTCTTA+AGG - Chr3:3776982-3777001 MsG0380011702.01.T01:CDS 45.0%
ATCAATCACAGCGACTGTCT+GGG + Chr3:3778256-3778275 None:intergenic 45.0%
CCACAATCACTTTCATCCCA+TGG + Chr3:3778147-3778166 None:intergenic 45.0%
CCATGGGATGAAAGTGATTG+TGG - Chr3:3778144-3778163 MsG0380011702.01.T01:intron 45.0%
GACATATATTCTCCCGGCAA+TGG + Chr3:3776388-3776407 None:intergenic 45.0%
GATCCTCCAACAAAAGGCTT+AGG + Chr3:3777219-3777238 None:intergenic 45.0%
GCCAAAGATCCTCCAACAAA+AGG + Chr3:3777225-3777244 None:intergenic 45.0%
GTCAGAGGATTCACACTTCT+AGG + Chr3:3776815-3776834 None:intergenic 45.0%
GTGTCTTAATCGTTGCTGAC+AGG + Chr3:3776474-3776493 None:intergenic 45.0%
TAAGGTCTTTGTCCATTGCC+GGG - Chr3:3776373-3776392 MsG0380011702.01.T01:intron 45.0%
TAGAGCCCCTCAAGTCTTAA+GGG - Chr3:3776983-3777002 MsG0380011702.01.T01:CDS 45.0%
TCTCACCCTTAAGACTTGAG+GGG + Chr3:3776991-3777010 None:intergenic 45.0%
TGTTTGCTTTGCAGGACCAT+TGG - Chr3:3777091-3777110 MsG0380011702.01.T01:intron 45.0%
! CTTCTGACGGACATACTTGT+AGG + Chr3:3778412-3778431 None:intergenic 45.0%
! GAACATAGTGGGACAAGAGA+TGG - Chr3:3778202-3778221 MsG0380011702.01.T01:intron 45.0%
! GCCTTTTGTTGGAGGATCTT+TGG - Chr3:3777221-3777240 MsG0380011702.01.T01:intron 45.0%
! TGAATCACGGTTGGCTACAA+TGG + Chr3:3775684-3775703 None:intergenic 45.0%
!! GAATCTAGGAAACTGGCTTG+TGG - Chr3:3775415-3775434 MsG0380011702.01.T01:CDS 45.0%
!! TATATTTATAAAAGATATTT+AGG - Chr3:3775765-3775784 MsG0380011702.01.T01:intron 5.0%
!!! AATATCTTTTATAAATATAA+CGG + Chr3:3775764-3775783 None:intergenic 5.0%
AAGACTTGAGGGGCTCTATC+TGG + Chr3:3776981-3777000 None:intergenic 50.0%
ACCAGAAGGTGAATCACGGT+TGG + Chr3:3775693-3775712 None:intergenic 50.0%
ACCGTGATTCACCTTCTGGT+TGG - Chr3:3775693-3775712 MsG0380011702.01.T01:intron 50.0%
CAGTGAGGATACCTGTTGGA+TGG - Chr3:3777169-3777188 MsG0380011702.01.T01:CDS 50.0%
CCCAACCAGAAGGTGAATCA+CGG + Chr3:3775697-3775716 None:intergenic 50.0%
CCTCCAACAAAAGGCTTAGG+TGG + Chr3:3777216-3777235 None:intergenic 50.0%
CTTACTCGCTACGCTTCTGA+CGG + Chr3:3778425-3778444 None:intergenic 50.0%
GAGCTGATGAATGAGCCACA+AGG - Chr3:3778655-3778674 MsG0380011702.01.T01:CDS 50.0%
GATGCAGTGAGGATACCTGT+TGG - Chr3:3777165-3777184 MsG0380011702.01.T01:CDS 50.0%
GTGGACTTGCATGCAGTTGA+AGG - Chr3:3778163-3778182 MsG0380011702.01.T01:intron 50.0%
TAGGCTATCCACCATCCAAC+AGG + Chr3:3777183-3777202 None:intergenic 50.0%
TGAGGATACCTGTTGGATGG+TGG - Chr3:3777172-3777191 MsG0380011702.01.T01:CDS 50.0%
TTCTTTAACCAGTGCCCCAG+AGG - Chr3:3777802-3777821 MsG0380011702.01.T01:intron 50.0%
! CCACCTAAGCCTTTTGTTGG+AGG - Chr3:3777213-3777232 MsG0380011702.01.T01:intron 50.0%
! CCGTGATTCACCTTCTGGTT+GGG - Chr3:3775694-3775713 MsG0380011702.01.T01:intron 50.0%
CTTTGTGCTGAAGATGGGGG+AGG - Chr3:3775653-3775672 MsG0380011702.01.T01:intron 55.0%
GCCAACCGTGATTCACCTTC+TGG - Chr3:3775689-3775708 MsG0380011702.01.T01:intron 55.0%
!! AGGAAACTGGCTTGTGGCTG+AGG - Chr3:3775421-3775440 MsG0380011702.01.T01:CDS 55.0%
!! GAAACTGGCTTGTGGCTGAG+GGG - Chr3:3775423-3775442 MsG0380011702.01.T01:CDS 55.0%
!! GGAAACTGGCTTGTGGCTGA+GGG - Chr3:3775422-3775441 MsG0380011702.01.T01:CDS 55.0%
!! AACAAGTGCCTCTGGGGCAC+TGG + Chr3:3777813-3777832 None:intergenic 60.0%
!! ACTGGCTTGTGGCTGAGGGG+TGG - Chr3:3775426-3775445 MsG0380011702.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 3775389 3778756 3775389 ID=MsG0380011702.01;Name=MsG0380011702.01
Chr3 mRNA 3775389 3778756 3775389 ID=MsG0380011702.01.T01;Parent=MsG0380011702.01;Name=MsG0380011702.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|5|0|196
Chr3 exon 3778651 3778756 3778651 ID=MsG0380011702.01.T01:exon:1925;Parent=MsG0380011702.01.T01
Chr3 exon 3777141 3777196 3777141 ID=MsG0380011702.01.T01:exon:1924;Parent=MsG0380011702.01.T01
Chr3 exon 3776871 3777040 3776871 ID=MsG0380011702.01.T01:exon:1923;Parent=MsG0380011702.01.T01
Chr3 exon 3775879 3776004 3775879 ID=MsG0380011702.01.T01:exon:1922;Parent=MsG0380011702.01.T01
Chr3 exon 3775389 3775521 3775389 ID=MsG0380011702.01.T01:exon:1921;Parent=MsG0380011702.01.T01
Chr3 CDS 3778651 3778756 3778651 ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3 CDS 3777141 3777196 3777141 ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3 CDS 3776871 3777040 3776871 ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3 CDS 3775879 3776004 3775879 ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Chr3 CDS 3775389 3775521 3775389 ID=MsG0380011702.01.T01:cds;Parent=MsG0380011702.01.T01
Gene Sequence

>MsG0380011702.01.T01

ATGGGAAATCCGCCATACAAAGCTGTGAATCTAGGAAACTGGCTTGTGGCTGAGGGGTGGATGAAACCTTCTCTCTTTGAAGGGAATTGTCAACAAAGATCTCTTGGAGAGTACCAACTTACTAATGGTTATGGTCCAGATAGAGCCCCTCAAGTCTTAAGGGACCATTGGAATTCATACATAACTGAAGATGATTTCAGATTCATGTCACAAAATGGATTAGATGCAGTGAGGATACCTGTTGGATGGTGGATAGCCTATGATCCAAATCCACCTAAGCCTTTTGTTGGAGGATCTTTGGCAGCACTTGACAATGCTTTCACATGGGCACAAAACCATGGGATGAAAGTGATTGTGGACTTGCATGCAGTTGAAGGTTCTCAAAATGGCAATGAACATAGTGGGACAAGAGATGGATATATAGAATGGGGTGATTCTTACATACCCAGACAGTCGCTGTATGGTAATAAACCAAGTTTAGGAGGAATAGAGCTGATGAATGAGCCACAAGGTGTCAATCTTGATAGTCTAAAGAAGTATTACAAGGCAGCTTATGATGCTGTGAGAAAATACAACTCAGAGGTTATGTGA
Protein sequence

>MsG0380011702.01.T01

MGNPPYKAVNLGNWLVAEGWMKPSLFEGNCQQRSLGEYQLTNGYGPDRAPQVLRDHWNSYITEDDFRFMSQNGLDAVRIPVGWWIAYDPNPPKPFVGGSLAALDNAFTWAQNHGMKVIVDLHAVEGSQNGNEHSGTRDGYIEWGDSYIPRQSLYGNKPSLGGIELMNEPQGVNLDSLKKYYKAAYDAVRKYNSEVM*