AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046212.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046212.01.T01 MTR_4g102840 77.181 447 16 5 1 381 1 427 0.0 672
MsG0880046212.01.T01 MTR_0019s0070 32.895 304 165 11 101 380 168 456 1.22e-28 116
MsG0880046212.01.T01 MTR_1g101330 36.170 235 116 9 116 336 187 401 7.13e-21 94.0
MsG0880046212.01.T01 MTR_1g041430 27.146 431 222 16 1 372 1 398 2.15e-19 89.7
MsG0880046212.01.T01 MTR_8g014580 33.415 410 186 18 1 346 1 387 2.00e-17 83.6
MsG0880046212.01.T01 MTR_1g103070 31.620 389 208 12 27 372 46 419 6.74e-14 73.2
MsG0880046212.01.T01 MTR_2g102380 91.429 35 3 0 344 378 1 35 1.76e-13 65.5
MsG0880046212.01.T01 MTR_8g102400 25.592 422 228 17 1 355 1 403 4.71e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046212.01.T01 AT4G23060 40.741 270 112 15 122 381 253 484 3.90e-35 135
MsG0880046212.01.T01 AT4G14750 27.119 354 191 14 1 338 1 303 1.10e-11 66.2
MsG0880046212.01.T01 AT3G16490 27.056 377 190 14 1 332 1 337 1.58e-11 65.9

Find 79 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATCTACGTTTCTCTTT+AGG 0.251832 8:-70617263 None:intergenic
TCATATTGAGGCCTTTGTTT+TGG 0.270764 8:-70620348 None:intergenic
TCGCTTCTTGTAGGAGTAAA+AGG 0.280382 8:-70620231 None:intergenic
CTTGGGCCATCGCTTCTTGT+AGG 0.300119 8:-70620240 None:intergenic
AGGATTGTTGAAATTGATTC+GGG 0.318333 8:+70619952 MsG0880046212.01.T01:CDS
GCCGTTGGAGAGACAAGATT+TGG 0.329473 8:-70619836 None:intergenic
TCCGCAGCCGCTGCCGTGGC+AGG 0.338694 8:-70617395 None:intergenic
AGAAATCGAGTTCGTCAAAT+AGG 0.340961 8:+70620370 MsG0880046212.01.T01:CDS
GAATCAAAATCTCATCAATT+TGG 0.345515 8:+70620066 MsG0880046212.01.T01:CDS
AGATGGTTTCGTGGCCTTCT+TGG 0.360236 8:+70617197 MsG0880046212.01.T01:CDS
TAGCCTCTAACGTAGCTTCT+TGG 0.363546 8:-70620258 None:intergenic
CTATCCTGGTTCCGGTCGTT+TGG 0.371033 8:+70620473 MsG0880046212.01.T01:CDS
TATATTTCATTGCAGAGAAA+TGG 0.378982 8:+70619811 MsG0880046212.01.T01:intron
TAGGATTGTTGAAATTGATT+CGG 0.384536 8:+70619951 MsG0880046212.01.T01:CDS
TTCTGACTGTAATAATAATC+AGG 0.390223 8:-70620027 None:intergenic
TTCATGCTCCTAGATCTAAC+AGG 0.395194 8:-70619670 None:intergenic
TGGACACGACATGGCAAGAT+TGG 0.396032 8:+70620404 MsG0880046212.01.T01:CDS
ACCTGCCACGGCAGCGGCTG+CGG 0.396923 8:+70617394 MsG0880046212.01.T01:CDS
CGATGGCCTGTCTGTTGTTA+TGG 0.400810 8:-70617364 None:intergenic
CTGAAAGCCCTGTTAGATCT+AGG 0.408830 8:+70619662 MsG0880046212.01.T01:CDS
AGCAAAGGCTATCCTGGTTC+CGG 0.408863 8:+70620465 MsG0880046212.01.T01:CDS
AGCCTCTAACGTAGCTTCTT+GGG 0.430229 8:-70620257 None:intergenic
CACCTAAAGAGAAACGTAGA+TGG 0.439241 8:+70617261 MsG0880046212.01.T01:CDS
TTCACTAGCAAAGGCTATCC+TGG 0.450957 8:+70620459 MsG0880046212.01.T01:CDS
CTGTATAAACCATGTAGCTT+GGG 0.451329 8:-70620290 None:intergenic
GGCCCAAGAAGCTACGTTAG+AGG 0.459692 8:+70620255 MsG0880046212.01.T01:CDS
TTCTGATATGTTGCTGCCGT+TGG 0.464509 8:-70619851 None:intergenic
ATCAGTTAGACGAACAATCA+TGG 0.472299 8:+70619875 MsG0880046212.01.T01:CDS
TCCGGTCGTTTGGATAAGCT+TGG 0.473131 8:+70620483 MsG0880046212.01.T01:CDS
CTCTGATTACCCAAGCTACA+TGG 0.482749 8:+70620281 MsG0880046212.01.T01:CDS
TGTGGCACCTGCCACGGCAG+CGG 0.486950 8:+70617388 MsG0880046212.01.T01:CDS
TCTGTATAAACCATGTAGCT+TGG 0.490552 8:-70620291 None:intergenic
CATCTACGTTTCTCTTTAGG+TGG 0.491070 8:-70617260 None:intergenic
AACCTCCGCAGCCGCTGCCG+TGG 0.492017 8:-70617399 None:intergenic
CGTCAGGATACGAGAACAAT+GGG 0.492036 8:+70617484 MsG0880046212.01.T01:CDS
CATCAATATCTATACCCTAC+AGG 0.494588 8:-70620510 None:intergenic
CATCGCTGTGGCACCTGCCA+CGG 0.500486 8:+70617382 MsG0880046212.01.T01:CDS
GATCACTTGTGGAATAAAAG+AGG 0.502284 8:-70620005 None:intergenic
AGATTTAATTACAGTAGTAA+TGG 0.503708 8:+70617458 MsG0880046212.01.T01:CDS
TTGTTATGGACATGTTCTGT+TGG 0.504792 8:-70617350 None:intergenic
AACTTCCACGAAAAGCGGCT+TGG 0.506836 8:-70617520 None:intergenic
CGTGGCAGGTGCCACAGCGA+TGG 0.511388 8:-70617381 None:intergenic
TGCCACGGCAGCGGCTGCGG+AGG 0.515431 8:+70617397 MsG0880046212.01.T01:CDS
AACCAAACTTCCACGAAAAG+CGG 0.516897 8:-70617525 None:intergenic
TCAAATAGGTACTCACTCAA+TGG 0.517109 8:+70620384 MsG0880046212.01.T01:CDS
ACAGTAGTAATGGCATCGTC+AGG 0.523397 8:+70617468 MsG0880046212.01.T01:CDS
GAACTCGATTTCTCATATTG+AGG 0.523559 8:-70620360 None:intergenic
TCAGAATTTGACCCCTTCAA+AGG 0.531017 8:+70620044 MsG0880046212.01.T01:CDS
TGCACTCATAGATCTAACTT+TGG 0.539356 8:-70620325 None:intergenic
ATGAAATCTGAGCATTCACC+TGG 0.541331 8:+70619688 MsG0880046212.01.T01:CDS
AAGTTGAGGACTATTGTTTG+CGG 0.546162 8:-70620166 None:intergenic
GATAAGCTTGGAATGCCTGT+AGG 0.551546 8:+70620495 MsG0880046212.01.T01:CDS
CAAGAAAATACCTTGAGTCC+AGG 0.551923 8:-70619706 None:intergenic
TCTGCAACTTCAAAAGATGA+TGG 0.554569 8:+70620195 MsG0880046212.01.T01:CDS
CAAGCAAGCTTCACTAGCAA+AGG 0.562259 8:+70620450 MsG0880046212.01.T01:CDS
TCCAAGCTTATCCAAACGAC+CGG 0.564514 8:-70620484 None:intergenic
ATAAGCTTGGAATGCCTGTA+GGG 0.568830 8:+70620496 MsG0880046212.01.T01:CDS
CACTAATAAGAACATATAGC+AGG 0.570955 8:+70619911 MsG0880046212.01.T01:CDS
TGAGCATTCACCTGGACTCA+AGG 0.572382 8:+70619696 MsG0880046212.01.T01:CDS
CTCACTCAATGGACACGACA+TGG 0.576134 8:+70620395 MsG0880046212.01.T01:CDS
CAATGCAGATGTTCTTTGTG+CGG 0.577984 8:-70620427 None:intergenic
TTATCCAAACGACCGGAACC+AGG 0.578361 8:-70620477 None:intergenic
ATAATAATCAGGATCACTTG+TGG 0.582053 8:-70620016 None:intergenic
TCCAAATCTTGTCTCTCCAA+CGG 0.585260 8:+70619835 MsG0880046212.01.T01:CDS
ATCAGAAGAAGAACCATGAT+CGG 0.586413 8:-70617231 None:intergenic
GTTGCAGATGATAAAAGTTG+AGG 0.588792 8:-70620180 None:intergenic
TGGTCAAAGTGTATCTTGTG+AGG 0.590678 8:+70620086 MsG0880046212.01.T01:CDS
AAAGCATCAAGATGGTTTCG+TGG 0.592249 8:+70617188 MsG0880046212.01.T01:CDS
CAATGGGAAAAGCATCAAGA+TGG 0.597654 8:+70617180 None:intergenic
ACATGTCCATAACAACAGAC+AGG 0.613391 8:+70617358 MsG0880046212.01.T01:CDS
TCGTCAGGATACGAGAACAA+TGG 0.618897 8:+70617483 MsG0880046212.01.T01:CDS
TTTACTCCTACAAGAAGCGA+TGG 0.621425 8:+70620234 MsG0880046212.01.T01:CDS
CTATGAGTGCACCAAAACAA+AGG 0.632089 8:+70620337 MsG0880046212.01.T01:CDS
GTAATTAAATCTGACAACCT+CGG 0.640843 8:-70617447 None:intergenic
TCATGCTCCTAGATCTAACA+GGG 0.657366 8:-70619669 None:intergenic
AAATGCTGAAAATGCTGCCG+AGG 0.668282 8:+70617430 MsG0880046212.01.T01:CDS
GGTTTATACAGAGTCAGCAA+AGG 0.678572 8:+70620302 MsG0880046212.01.T01:CDS
CAACAGACAGGCCATCGCTG+TGG 0.692042 8:+70617370 MsG0880046212.01.T01:CDS
GTTCTGTTGGAAACGTGACG+TGG 0.750062 8:-70617337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATTAAAATTTAT+TGG - Chr8:70617679-70617698 None:intergenic 0.0%
!!! AAAATGTTTTTTCAAAAAAA+AGG - Chr8:70618625-70618644 None:intergenic 10.0%
!!! TTTTAAATATTGAAATTGTT+AGG + Chr8:70619135-70619154 MsG0880046212.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTGACAAAT+TGG + Chr8:70617721-70617740 MsG0880046212.01.T01:intron 10.0%
!!! TTAATAGAAGTTATTTCATT+CGG + Chr8:70618785-70618804 MsG0880046212.01.T01:intron 15.0%
!!! TTTAGTTTTATTAATGAATG+TGG + Chr8:70618057-70618076 MsG0880046212.01.T01:intron 15.0%
!! AAAACAAAACTTAGAAATGA+AGG - Chr8:70617579-70617598 None:intergenic 20.0%
!! AATTATGGGAATGAAATTAA+TGG - Chr8:70617556-70617575 None:intergenic 20.0%
!! AGATTTAATTACAGTAGTAA+TGG + Chr8:70617458-70617477 MsG0880046212.01.T01:CDS 20.0%
!! ATTTATGATGTTTCCTTTAT+AGG + Chr8:70617822-70617841 MsG0880046212.01.T01:intron 20.0%
!! GAATGAAATAACTTCTATTA+AGG - Chr8:70618786-70618805 None:intergenic 20.0%
!! GTCATTATTTAACTACAAAA+AGG - Chr8:70618184-70618203 None:intergenic 20.0%
!! TAAATAATGACATTCAACTT+TGG + Chr8:70618193-70618212 MsG0880046212.01.T01:intron 20.0%
!! TCAAATTATTTGTCTACTTA+TGG + Chr8:70619781-70619800 MsG0880046212.01.T01:intron 20.0%
!! TTATTGAATGTTTGATAGAT+AGG + Chr8:70618108-70618127 MsG0880046212.01.T01:intron 20.0%
!! TTATTTAACTACAAAAAGGA+CGG - Chr8:70618180-70618199 None:intergenic 20.0%
!! TTTGGGTAAAAATTAAGAAA+TGG - Chr8:70619740-70619759 None:intergenic 20.0%
!!! ATAGTTCTGTAAATTTTACA+TGG - Chr8:70617960-70617979 None:intergenic 20.0%
!!! GTTGATTTTTGTATTTGTTT+TGG + Chr8:70619467-70619486 MsG0880046212.01.T01:intron 20.0%
! AACAAAGTAAATAAAGACTG+CGG - Chr8:70618994-70619013 None:intergenic 25.0%
! AATATTGAAATTGTTAGGCA+AGG + Chr8:70619140-70619159 MsG0880046212.01.T01:intron 25.0%
! ACTTAGAAATGAAGGAATTA+TGG - Chr8:70617571-70617590 None:intergenic 25.0%
! ATTTATTGGTGTGTAAACTT+AGG - Chr8:70617665-70617684 None:intergenic 25.0%
! CTTAGAAATGAAGGAATTAT+GGG - Chr8:70617570-70617589 None:intergenic 25.0%
! GAAAAATCATACAACAAACA+AGG - Chr8:70618338-70618357 None:intergenic 25.0%
! GAATCAAAATCTCATCAATT+TGG + Chr8:70620066-70620085 MsG0880046212.01.T01:CDS 25.0%
! GTTAAGTTCAAAGTAATTGT+AGG - Chr8:70619079-70619098 None:intergenic 25.0%
! TAAAGACTGGTAAAAAAGAT+GGG + Chr8:70618358-70618377 MsG0880046212.01.T01:intron 25.0%
! TAGGAAATTAATTGAAGCAA+TGG - Chr8:70619060-70619079 None:intergenic 25.0%
! TAGGATTGTTGAAATTGATT+CGG + Chr8:70619951-70619970 MsG0880046212.01.T01:CDS 25.0%
! TATATTTCATTGCAGAGAAA+TGG + Chr8:70619811-70619830 MsG0880046212.01.T01:intron 25.0%
! TATTTCCTTGTCACATTTAA+TGG + Chr8:70617875-70617894 MsG0880046212.01.T01:intron 25.0%
! TCATAATTACACATACATAG+AGG - Chr8:70619348-70619367 None:intergenic 25.0%
! TGTAACTAACAATCCTATAA+AGG - Chr8:70617838-70617857 None:intergenic 25.0%
! TTCTCTGCAATGAAATATAA+TGG - Chr8:70619810-70619829 None:intergenic 25.0%
! TTCTGACTGTAATAATAATC+AGG - Chr8:70620030-70620049 None:intergenic 25.0%
! TTTACAAATGATCGTATACA+GGG + Chr8:70619619-70619638 MsG0880046212.01.T01:intron 25.0%
! TTTATTGGTGTGTAAACTTA+GGG - Chr8:70617664-70617683 None:intergenic 25.0%
! TTTGCAGATATGGAATAATT+TGG + Chr8:70618849-70618868 MsG0880046212.01.T01:intron 25.0%
!! CATTAGAAGTGTAATAATGA+TGG - Chr8:70618459-70618478 None:intergenic 25.0%
!! TTTTACAAATGATCGTATAC+AGG + Chr8:70619618-70619637 MsG0880046212.01.T01:intron 25.0%
!! TTTTACATGGAACGAATTAA+TGG - Chr8:70617947-70617966 None:intergenic 25.0%
!!! AAAGAATGCAATCACTTTTA+CGG + Chr8:70619251-70619270 MsG0880046212.01.T01:intron 25.0%
!!! GTATTGTACTTTTGTTTTCT+TGG + Chr8:70618552-70618571 MsG0880046212.01.T01:intron 25.0%
!!! TGTATGATTTTTCTAAAGAC+TGG + Chr8:70618345-70618364 MsG0880046212.01.T01:intron 25.0%
AAAAGAACAAGTCTACATCA+AGG - Chr8:70618483-70618502 None:intergenic 30.0%
AAAGACTGGTAAAAAAGATG+GGG + Chr8:70618359-70618378 MsG0880046212.01.T01:intron 30.0%
AAGTGTAATAATGATGGTCA+AGG - Chr8:70618453-70618472 None:intergenic 30.0%
ACATCAACTATGCAGTTAAA+AGG - Chr8:70619408-70619427 None:intergenic 30.0%
ATAATAATCAGGATCACTTG+TGG - Chr8:70620019-70620038 None:intergenic 30.0%
CACTAATAAGAACATATAGC+AGG + Chr8:70619911-70619930 MsG0880046212.01.T01:CDS 30.0%
CTAAAGACTGGTAAAAAAGA+TGG + Chr8:70618357-70618376 MsG0880046212.01.T01:intron 30.0%
CTTGTATAGGAAACATCTTA+GGG - Chr8:70618953-70618972 None:intergenic 30.0%
GGTATAACAGAATCTTGTAT+AGG - Chr8:70618966-70618985 None:intergenic 30.0%
GTAATTAAATCTGACAACCT+CGG - Chr8:70617450-70617469 None:intergenic 30.0%
GTTATTTACAGAATGTAGTG+TGG + Chr8:70619011-70619030 MsG0880046212.01.T01:intron 30.0%
TAAATAAAGACTGCGGATAT+TGG - Chr8:70618987-70619006 None:intergenic 30.0%
TAATTACACATACATAGAGG+TGG - Chr8:70619345-70619364 None:intergenic 30.0%
TAGATCAAAGAACATGATGT+TGG - Chr8:70619588-70619607 None:intergenic 30.0%
TCAGTATCTCAAACATAGTA+AGG - Chr8:70619101-70619120 None:intergenic 30.0%
TCTTGTATAGGAAACATCTT+AGG - Chr8:70618954-70618973 None:intergenic 30.0%
TGATGAATCACAGAAAAAAG+AGG - Chr8:70619380-70619399 None:intergenic 30.0%
TTATATTCCCTGTAGATTCA+GGG - Chr8:70618254-70618273 None:intergenic 30.0%
TTGATCCATTAAATGTGACA+AGG - Chr8:70617883-70617902 None:intergenic 30.0%
TTTATATTCCCTGTAGATTC+AGG - Chr8:70618255-70618274 None:intergenic 30.0%
! AGGATTGTTGAAATTGATTC+GGG + Chr8:70619952-70619971 MsG0880046212.01.T01:CDS 30.0%
! CACATTTAATGGATCAATGA+TGG + Chr8:70617886-70617905 MsG0880046212.01.T01:intron 30.0%
! TGTTTTCTTGGCTTATACTT+GGG + Chr8:70618564-70618583 MsG0880046212.01.T01:intron 30.0%
! TTGTTTTCTTGGCTTATACT+TGG + Chr8:70618563-70618582 MsG0880046212.01.T01:intron 30.0%
! TTTAACTGCATAGTTGATGT+AGG + Chr8:70619408-70619427 MsG0880046212.01.T01:intron 30.0%
! TTTACCCTGAAAAATGGTTT+TGG + Chr8:70617786-70617805 MsG0880046212.01.T01:intron 30.0%
!! AAGAATGCAATCACTTTTAC+GGG + Chr8:70619252-70619271 MsG0880046212.01.T01:intron 30.0%
!! CAACTTCGTTAAGTTTTAGT+GGG - Chr8:70620128-70620147 None:intergenic 30.0%
!! TCAACTTCGTTAAGTTTTAG+TGG - Chr8:70620129-70620148 None:intergenic 30.0%
!! TGTACCAAAACCATTTTTCA+GGG - Chr8:70617793-70617812 None:intergenic 30.0%
!! TTGTACCAAAACCATTTTTC+AGG - Chr8:70617794-70617813 None:intergenic 30.0%
!!! AAAGGACGGAGAATTTTTTA+TGG - Chr8:70618166-70618185 None:intergenic 30.0%
!!! AAGGACGGAGAATTTTTTAT+GGG - Chr8:70618165-70618184 None:intergenic 30.0%
!!! AGATTTTGATTCCTTTGAAG+GGG - Chr8:70620058-70620077 None:intergenic 30.0%
!!! GAGATTTTGATTCCTTTGAA+GGG - Chr8:70620059-70620078 None:intergenic 30.0%
!!! GTGTTTTGATTTGCAATTTC+TGG + Chr8:70618418-70618437 MsG0880046212.01.T01:intron 30.0%
!!! TGAGATTTTGATTCCTTTGA+AGG - Chr8:70620060-70620079 None:intergenic 30.0%
!!! TGCTCAAGTTTTGATTTTGT+GGG + Chr8:70618522-70618541 MsG0880046212.01.T01:intron 30.0%
!!! TTGCTCAAGTTTTGATTTTG+TGG + Chr8:70618521-70618540 MsG0880046212.01.T01:intron 30.0%
!!! TTTTGATTTGCAATTTCTGG+TGG + Chr8:70618421-70618440 MsG0880046212.01.T01:intron 30.0%
AAGTTGAGGACTATTGTTTG+CGG - Chr8:70620169-70620188 None:intergenic 35.0%
AATGTGGAATTTGTCAACGA+TGG + Chr8:70618073-70618092 MsG0880046212.01.T01:intron 35.0%
ACACTCAATGCACATTGTTT+GGG - Chr8:70619757-70619776 None:intergenic 35.0%
AGAAATCGAGTTCGTCAAAT+AGG + Chr8:70620370-70620389 MsG0880046212.01.T01:CDS 35.0%
AGAGATTACACTCAACTTCT+AGG - Chr8:70618007-70618026 None:intergenic 35.0%
ATCAGAAGAAGAACCATGAT+CGG - Chr8:70617234-70617253 None:intergenic 35.0%
ATCAGTTAGACGAACAATCA+TGG + Chr8:70619875-70619894 MsG0880046212.01.T01:CDS 35.0%
ATTCAAATGTGACGTTTGCA+TGG - Chr8:70619305-70619324 None:intergenic 35.0%
CTGTATAAACCATGTAGCTT+GGG - Chr8:70620293-70620312 None:intergenic 35.0%
GAACTCGATTTCTCATATTG+AGG - Chr8:70620363-70620382 None:intergenic 35.0%
GATCACTTGTGGAATAAAAG+AGG - Chr8:70620008-70620027 None:intergenic 35.0%
GCTATGTTTACCCTGAAAAA+TGG + Chr8:70617780-70617799 MsG0880046212.01.T01:intron 35.0%
GTAGTAGAAGAATAGAACCA+TGG - Chr8:70618137-70618156 None:intergenic 35.0%
GTTCTATTCTTCTACTACCA+TGG + Chr8:70618139-70618158 MsG0880046212.01.T01:intron 35.0%
GTTGCAGATGATAAAAGTTG+AGG - Chr8:70620183-70620202 None:intergenic 35.0%
TACACTCAATGCACATTGTT+TGG - Chr8:70619758-70619777 None:intergenic 35.0%
TATATTCCCTGTAGATTCAG+GGG - Chr8:70618253-70618272 None:intergenic 35.0%
TCAAATAGGTACTCACTCAA+TGG + Chr8:70620384-70620403 MsG0880046212.01.T01:CDS 35.0%
TCTGCAACTTCAAAAGATGA+TGG + Chr8:70620195-70620214 MsG0880046212.01.T01:CDS 35.0%
TCTGTATAAACCATGTAGCT+TGG - Chr8:70620294-70620313 None:intergenic 35.0%
TGCACTCATAGATCTAACTT+TGG - Chr8:70620328-70620347 None:intergenic 35.0%
TGTGTAAACTTAGGGATTAG+TGG - Chr8:70617656-70617675 None:intergenic 35.0%
TTGAAATTGTTAGGCAAGGA+AGG + Chr8:70619144-70619163 MsG0880046212.01.T01:intron 35.0%
TTGTTATGGACATGTTCTGT+TGG - Chr8:70617353-70617372 None:intergenic 35.0%
TTTGACAACAAAAGAGAGCA+GGG - Chr8:70618738-70618757 None:intergenic 35.0%
! GCACTTTCATTTTGCAGATA+TGG + Chr8:70618839-70618858 MsG0880046212.01.T01:intron 35.0%
! GTGTGAAGAGACTTTTATGT+TGG + Chr8:70618289-70618308 MsG0880046212.01.T01:intron 35.0%
! TAGTTGATGTAGGAGTATGA+AGG + Chr8:70619418-70619437 MsG0880046212.01.T01:intron 35.0%
!! AGCATTTTCAGCATTTGCTA+CGG - Chr8:70617426-70617445 None:intergenic 35.0%
!! TCATATTGAGGCCTTTGTTT+TGG - Chr8:70620351-70620370 None:intergenic 35.0%
!!! GCTCAAGTTTTGATTTTGTG+GGG + Chr8:70618523-70618542 MsG0880046212.01.T01:intron 35.0%
!!! TCAGATTTTTCTGGTGTTAC+TGG - Chr8:70619646-70619665 None:intergenic 35.0%
AACCAAACTTCCACGAAAAG+CGG - Chr8:70617528-70617547 None:intergenic 40.0%
ACATGTCCATAACAACAGAC+AGG + Chr8:70617358-70617377 MsG0880046212.01.T01:CDS 40.0%
ATAAGCTTGGAATGCCTGTA+GGG + Chr8:70620496-70620515 MsG0880046212.01.T01:CDS 40.0%
ATGAAATCTGAGCATTCACC+TGG + Chr8:70619688-70619707 MsG0880046212.01.T01:CDS 40.0%
CAAGAAAATACCTTGAGTCC+AGG - Chr8:70619709-70619728 None:intergenic 40.0%
CAATGCAGATGTTCTTTGTG+CGG - Chr8:70620430-70620449 None:intergenic 40.0%
CACCTAAAGAGAAACGTAGA+TGG + Chr8:70617261-70617280 MsG0880046212.01.T01:CDS 40.0%
CATCTACGTTTCTCTTTAGG+TGG - Chr8:70617263-70617282 None:intergenic 40.0%
CTATGAGTGCACCAAAACAA+AGG + Chr8:70620337-70620356 MsG0880046212.01.T01:CDS 40.0%
CTCCATCTACGTTTCTCTTT+AGG - Chr8:70617266-70617285 None:intergenic 40.0%
CTTTGACAACAAAAGAGAGC+AGG - Chr8:70618739-70618758 None:intergenic 40.0%
GAACATGATGTTGGCACTAT+TGG - Chr8:70619579-70619598 None:intergenic 40.0%
GATAGCACAGTCAAATGACT+TGG - Chr8:70618878-70618897 None:intergenic 40.0%
GGAGTGACGAAAAAAGTGAT+AGG + Chr8:70619932-70619951 MsG0880046212.01.T01:CDS 40.0%
GGTCTCAAAAAAACCGATCA+TGG + Chr8:70617218-70617237 MsG0880046212.01.T01:CDS 40.0%
GGTTTATACAGAGTCAGCAA+AGG + Chr8:70620302-70620321 MsG0880046212.01.T01:CDS 40.0%
GTAATAATGATGGTCAAGGC+AGG - Chr8:70618449-70618468 None:intergenic 40.0%
GTAGAAGAATAGAACCATGG+TGG - Chr8:70618134-70618153 None:intergenic 40.0%
TAGCACAGTAGAGCATAAGA+TGG - Chr8:70617923-70617942 None:intergenic 40.0%
TCAGAATTTGACCCCTTCAA+AGG + Chr8:70620044-70620063 MsG0880046212.01.T01:CDS 40.0%
TCATGCTCCTAGATCTAACA+GGG - Chr8:70619672-70619691 None:intergenic 40.0%
TCCAAATCTTGTCTCTCCAA+CGG + Chr8:70619835-70619854 MsG0880046212.01.T01:CDS 40.0%
TCGCTTCTTGTAGGAGTAAA+AGG - Chr8:70620234-70620253 None:intergenic 40.0%
TGGAATTTGTCAACGATGGT+AGG + Chr8:70618077-70618096 MsG0880046212.01.T01:intron 40.0%
TGGTCAAAGTGTATCTTGTG+AGG + Chr8:70620086-70620105 MsG0880046212.01.T01:CDS 40.0%
TTCATGCTCCTAGATCTAAC+AGG - Chr8:70619673-70619692 None:intergenic 40.0%
TTGACAACAAAAGAGAGCAG+GGG - Chr8:70618737-70618756 None:intergenic 40.0%
TTTACTCCTACAAGAAGCGA+TGG + Chr8:70620234-70620253 MsG0880046212.01.T01:CDS 40.0%
! AAAGCATCAAGATGGTTTCG+TGG + Chr8:70617188-70617207 MsG0880046212.01.T01:CDS 40.0%
! ACAGGGCTTTCAGATTTTTC+TGG - Chr8:70619655-70619674 None:intergenic 40.0%
! AGAGACTTTTATGTTGGCGT+AGG + Chr8:70618295-70618314 MsG0880046212.01.T01:intron 40.0%
!! AACTTTGGCCTTTTGGTTGT+GGG + Chr8:70618208-70618227 MsG0880046212.01.T01:intron 40.0%
!! GACATTCAACTTTGGCCTTT+TGG + Chr8:70618201-70618220 MsG0880046212.01.T01:intron 40.0%
!!! CGGTTTTTTTGAGACCAAGA+AGG - Chr8:70617214-70617233 None:intergenic 40.0%
!!! GGAGAATTTTTTATGGGCCA+TGG - Chr8:70618159-70618178 None:intergenic 40.0%
AAATGCTGAAAATGCTGCCG+AGG + Chr8:70617430-70617449 MsG0880046212.01.T01:CDS 45.0%
ACAGTAGTAATGGCATCGTC+AGG + Chr8:70617468-70617487 MsG0880046212.01.T01:CDS 45.0%
AGCCTCTAACGTAGCTTCTT+GGG - Chr8:70620260-70620279 None:intergenic 45.0%
ATGTTGGCGTAGGTGAATGA+GGG + Chr8:70618305-70618324 MsG0880046212.01.T01:intron 45.0%
CAAGCAAGCTTCACTAGCAA+AGG + Chr8:70620450-70620469 MsG0880046212.01.T01:CDS 45.0%
CGTCAGGATACGAGAACAAT+GGG + Chr8:70617484-70617503 MsG0880046212.01.T01:CDS 45.0%
CTCTGATTACCCAAGCTACA+TGG + Chr8:70620281-70620300 MsG0880046212.01.T01:CDS 45.0%
CTGAAAGCCCTGTTAGATCT+AGG + Chr8:70619662-70619681 MsG0880046212.01.T01:CDS 45.0%
GATAAGCTTGGAATGCCTGT+AGG + Chr8:70620495-70620514 MsG0880046212.01.T01:CDS 45.0%
GTTTGATAGATAGGCCACCA+TGG + Chr8:70618117-70618136 MsG0880046212.01.T01:intron 45.0%
TAGCCTCTAACGTAGCTTCT+TGG - Chr8:70620261-70620280 None:intergenic 45.0%
TATGTTGGCGTAGGTGAATG+AGG + Chr8:70618304-70618323 MsG0880046212.01.T01:intron 45.0%
TCCAAGCTTATCCAAACGAC+CGG - Chr8:70620487-70620506 None:intergenic 45.0%
TCGTCAGGATACGAGAACAA+TGG + Chr8:70617483-70617502 MsG0880046212.01.T01:CDS 45.0%
TCTTGGCTTATACTTGGGCA+GGG + Chr8:70618569-70618588 MsG0880046212.01.T01:intron 45.0%
TGACAACAAAAGAGAGCAGG+GGG - Chr8:70618736-70618755 None:intergenic 45.0%
TTCACTAGCAAAGGCTATCC+TGG + Chr8:70620459-70620478 MsG0880046212.01.T01:CDS 45.0%
TTCTGATATGTTGCTGCCGT+TGG - Chr8:70619854-70619873 None:intergenic 45.0%
TTCTTGGCTTATACTTGGGC+AGG + Chr8:70618568-70618587 MsG0880046212.01.T01:intron 45.0%
TTGTCAACGATGGTAGGTGT+TGG + Chr8:70618083-70618102 MsG0880046212.01.T01:intron 45.0%
! AGGCACTGCGAGCATTAAAA+GGG + Chr8:70619164-70619183 MsG0880046212.01.T01:intron 45.0%
!! AAGGCACTGCGAGCATTAAA+AGG + Chr8:70619163-70619182 MsG0880046212.01.T01:intron 45.0%
!! ACTTTGGCCTTTTGGTTGTG+GGG + Chr8:70618209-70618228 MsG0880046212.01.T01:intron 45.0%
!! CAACTTTGGCCTTTTGGTTG+TGG + Chr8:70618207-70618226 MsG0880046212.01.T01:intron 45.0%
!!! ATTTTATTTAAAATAATGTT+TGG + Chr8:70617689-70617708 MsG0880046212.01.T01:intron 5.0%
AACTTCCACGAAAAGCGGCT+TGG - Chr8:70617523-70617542 None:intergenic 50.0%
ACTGCGAGCATTAAAAGGGC+TGG + Chr8:70619168-70619187 MsG0880046212.01.T01:intron 50.0%
AGAGGAAACGAACAGCAGAG+TGG + Chr8:70619224-70619243 MsG0880046212.01.T01:intron 50.0%
AGATGGTTTCGTGGCCTTCT+TGG + Chr8:70617197-70617216 MsG0880046212.01.T01:CDS 50.0%
AGCAAAGGCTATCCTGGTTC+CGG + Chr8:70620465-70620484 MsG0880046212.01.T01:CDS 50.0%
CCATTGTCCCCACAACCAAA+AGG - Chr8:70618219-70618238 None:intergenic 50.0%
CGATGGCCTGTCTGTTGTTA+TGG - Chr8:70617367-70617386 None:intergenic 50.0%
CTCACTCAATGGACACGACA+TGG + Chr8:70620395-70620414 MsG0880046212.01.T01:CDS 50.0%
GACAACAAAAGAGAGCAGGG+GGG - Chr8:70618735-70618754 None:intergenic 50.0%
GCAGGGAAGTTGTTGAAGGA+AGG + Chr8:70618586-70618605 MsG0880046212.01.T01:intron 50.0%
GCCGTTGGAGAGACAAGATT+TGG - Chr8:70619839-70619858 None:intergenic 50.0%
GTTCTGTTGGAAACGTGACG+TGG - Chr8:70617340-70617359 None:intergenic 50.0%
TCCGGTCGTTTGGATAAGCT+TGG + Chr8:70620483-70620502 MsG0880046212.01.T01:CDS 50.0%
TGAGCATTCACCTGGACTCA+AGG + Chr8:70619696-70619715 MsG0880046212.01.T01:CDS 50.0%
TGGACACGACATGGCAAGAT+TGG + Chr8:70620404-70620423 MsG0880046212.01.T01:CDS 50.0%
TGGTGAGAGGTCACATTGAG+AGG + Chr8:70619206-70619225 MsG0880046212.01.T01:intron 50.0%
TGTCCCATGAGCTGAGTCTA+GGG + Chr8:70618395-70618414 MsG0880046212.01.T01:intron 50.0%
TTATCCAAACGACCGGAACC+AGG - Chr8:70620480-70620499 None:intergenic 50.0%
TTGGGCAGGGAAGTTGTTGA+AGG + Chr8:70618582-70618601 MsG0880046212.01.T01:intron 50.0%
!! AAACTCCAAGCACTGGTGAG+AGG + Chr8:70619193-70619212 MsG0880046212.01.T01:intron 50.0%
!! CCTTTTGGTTGTGGGGACAA+TGG + Chr8:70618216-70618235 MsG0880046212.01.T01:intron 50.0%
!! GCAATCACTTTTACGGGCAC+AGG + Chr8:70619258-70619277 MsG0880046212.01.T01:intron 50.0%
!! TAGTGTGGCTCTGAGTGCTA+CGG + Chr8:70619026-70619045 MsG0880046212.01.T01:intron 50.0%
!!! AAGATCCAAGCCGCTTTTCG+TGG + Chr8:70617515-70617534 MsG0880046212.01.T01:CDS 50.0%
!!! AGCCGCTTTTCGTGGAAGTT+TGG + Chr8:70617523-70617542 MsG0880046212.01.T01:CDS 50.0%
ACACCCCTAGACTCAGCTCA+TGG - Chr8:70618402-70618421 None:intergenic 55.0%
CACCAGCCCCTGAATCTACA+GGG + Chr8:70618244-70618263 MsG0880046212.01.T01:intron 55.0%
CACCCCTAGACTCAGCTCAT+GGG - Chr8:70618401-70618420 None:intergenic 55.0%
CGTAGGTGAATGAGGGTGGT+TGG + Chr8:70618312-70618331 MsG0880046212.01.T01:intron 55.0%
CTATCCTGGTTCCGGTCGTT+TGG + Chr8:70620473-70620492 MsG0880046212.01.T01:CDS 55.0%
CTTGGGCCATCGCTTCTTGT+AGG - Chr8:70620243-70620262 None:intergenic 55.0%
GCTGGTGAAACTCCAAGCAC+TGG + Chr8:70619186-70619205 MsG0880046212.01.T01:intron 55.0%
GGCCCAAGAAGCTACGTTAG+AGG + Chr8:70620255-70620274 MsG0880046212.01.T01:CDS 55.0%
GTCCCATGAGCTGAGTCTAG+GGG + Chr8:70618396-70618415 MsG0880046212.01.T01:intron 55.0%
GTGTCCCATGAGCTGAGTCT+AGG + Chr8:70618394-70618413 MsG0880046212.01.T01:intron 55.0%
TGTGACCTCTCACCAGTGCT+TGG - Chr8:70619201-70619220 None:intergenic 55.0%
TTCCCTGTAGATTCAGGGGC+TGG - Chr8:70618249-70618268 None:intergenic 55.0%
TTGGCGTAGGTGAATGAGGG+TGG + Chr8:70618308-70618327 MsG0880046212.01.T01:intron 55.0%
CAACAGACAGGCCATCGCTG+TGG + Chr8:70617370-70617389 MsG0880046212.01.T01:CDS 60.0%
CCACCAGCCCCTGAATCTAC+AGG + Chr8:70618243-70618262 MsG0880046212.01.T01:intron 60.0%
CCTGTAGATTCAGGGGCTGG+TGG - Chr8:70618246-70618265 None:intergenic 60.0%
! GTAGATTCAGGGGCTGGTGG+TGG - Chr8:70618243-70618262 None:intergenic 60.0%
CATCGCTGTGGCACCTGCCA+CGG + Chr8:70617382-70617401 MsG0880046212.01.T01:CDS 65.0%
TGTGGCACCTGCCACGGCAG+CGG + Chr8:70617388-70617407 MsG0880046212.01.T01:CDS 70.0%
! CGTGGCAGGTGCCACAGCGA+TGG - Chr8:70617384-70617403 None:intergenic 70.0%
AACCTCCGCAGCCGCTGCCG+TGG - Chr8:70617402-70617421 None:intergenic 75.0%
ACCTGCCACGGCAGCGGCTG+CGG + Chr8:70617394-70617413 MsG0880046212.01.T01:CDS 75.0%
! TCCGCAGCCGCTGCCGTGGC+AGG - Chr8:70617398-70617417 None:intergenic 80.0%
! TGCCACGGCAGCGGCTGCGG+AGG + Chr8:70617397-70617416 MsG0880046212.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr8 gene 70617182 70620530 70617182 ID=MsG0880046212.01;Name=MsG0880046212.01
Chr8 mRNA 70617182 70620530 70617182 ID=MsG0880046212.01.T01;Parent=MsG0880046212.01;Name=MsG0880046212.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|381
Chr8 exon 70617182 70617544 70617182 ID=MsG0880046212.01.T01:exon:27658;Parent=MsG0880046212.01.T01
Chr8 exon 70619640 70619717 70619640 ID=MsG0880046212.01.T01:exon:27659;Parent=MsG0880046212.01.T01
Chr8 exon 70619826 70620530 70619826 ID=MsG0880046212.01.T01:exon:27660;Parent=MsG0880046212.01.T01
Chr8 CDS 70617182 70617544 70617182 ID=MsG0880046212.01.T01:cds;Parent=MsG0880046212.01.T01
Chr8 CDS 70619640 70619717 70619640 ID=MsG0880046212.01.T01:cds;Parent=MsG0880046212.01.T01
Chr8 CDS 70619826 70620530 70619826 ID=MsG0880046212.01.T01:cds;Parent=MsG0880046212.01.T01
Gene Sequence

>MsG0880046212.01.T01

ATGGGAAAAGCATCAAGATGGTTTCGTGGCCTTCTTGGTCTCAAAAAAACCGATCATGGTTCTTCTTCTGATCAGAAACCACCTAAAGAGAAACGTAGATGGAGTTTCGTAAAGTCATACAGAGAAGAAGAACAACAACAACAACAACATAGCAGCCACGTCACGTTTCCAACAGAACATGTCCATAACAACAGACAGGCCATCGCTGTGGCACCTGCCACGGCAGCGGCTGCGGAGGTTGCCGTAGCAAATGCTGAAAATGCTGCCGAGGTTGTCAGATTTAATTACAGTAGTAATGGCATCGTCAGGATACGAGAACAATGGGCTGCTGTTAAGATCCAAGCCGCTTTTCGTGGAAGTTTGGGTCCAGTAACACCAGAAAAATCTGAAAGCCCTGTTAGATCTAGGAGCATGAAATCTGAGCATTCACCTGGACTCAAGAGAAATGGCTCCAAATCTTGTCTCTCCAACGGCAGCAACATATCAGAAAATCAGTTAGACGAACAATCATGGAATAGAGTAAGATCACTAATAAGAACATATAGCAGGAGTGACGAAAAAAGTGATAGGATTGTTGAAATTGATTCGGGAAAACAACACATCAATGCAAAACGCAGAAACCTCTTTTATTCCACAAGTGATCCTGATTATTATTACAGTCAGAATTTGACCCCTTCAAAGGAATCAAAATCTCATCAATTTGGTCAAAGTGTATCTTGTGAGGTTCAATCTTATTACAACCCACTAAAACTTAACGAAGTTGAAGAGAACTCGTTTTGTACCGCAAACAATAGTCCTCAACTTTTATCATCTGCAACTTCAAAAGATGATGGTTACAATAGAAGTCCTTTTACTCCTACAAGAAGCGATGGCCCAAGAAGCTACGTTAGAGGCTACTCTGATTACCCAAGCTACATGGTTTATACAGAGTCAGCAAAGGCCAAAGTTAGATCTATGAGTGCACCAAAACAAAGGCCTCAATATGAGAAATCGAGTTCGTCAAATAGGTACTCACTCAATGGACACGACATGGCAAGATTGGCCGCACAAAGAACATCTGCATTGCAAGCAAGCTTCACTAGCAAAGGCTATCCTGGTTCCGGTCGTTTGGATAAGCTTGGAATGCCTGTAGGGTATAGATATTGA

Protein sequence

>MsG0880046212.01.T01

MGKASRWFRGLLGLKKTDHGSSSDQKPPKEKRRWSFVKSYREEEQQQQQHSSHVTFPTEHVHNNRQAIAVAPATAAAAEVAVANAENAAEVVRFNYSSNGIVRIREQWAAVKIQAAFRGSLGPVTPEKSESPVRSRSMKSEHSPGLKRNGSKSCLSNGSNISENQLDEQSWNRVRSLIRTYSRSDEKSDRIVEIDSGKQHINAKRRNLFYSTSDPDYYYSQNLTPSKESKSHQFGQSVSCEVQSYYNPLKLNEVEENSFCTANNSPQLLSSATSKDDGYNRSPFTPTRSDGPRSYVRGYSDYPSYMVYTESAKAKVRSMSAPKQRPQYEKSSSSNRYSLNGHDMARLAAQRTSALQASFTSKGYPGSGRLDKLGMPVGYRY*