AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046458.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046458.01.T01 MTR_0140s0050 75.648 193 10 4 1 182 1 167 3.28e-88 258
MsG0880046458.01.T01 MTR_3g435580 51.759 199 79 3 1 182 1 199 7.11e-60 187
MsG0880046458.01.T01 MTR_2g094530 50.980 102 44 2 20 116 36 136 1.97e-21 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046458.01.T01 AT5G62440 66.129 124 36 2 51 174 53 170 7.64e-53 169

Find 55 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCAGGTCCTGTGAAAT+TGG 0.210319 8:+73618204 MsG0880046458.01.T01:CDS
GCAAGTGTTTCTTTCTCATT+AGG 0.216772 8:+73619823 MsG0880046458.01.T01:CDS
ATGTCTACAGCGACGATTTC+TGG 0.267784 8:-73618031 None:intergenic
CAAAACTTTCGGCTCTTCTT+TGG 0.271810 8:+73618231 MsG0880046458.01.T01:CDS
TGTTTCACTTGCATTGCTTC+TGG 0.296516 8:-73619906 None:intergenic
AACAGAGCATTGGGTGGTTC+TGG 0.319267 8:+73619936 MsG0880046458.01.T01:CDS
CAAGTGTTTCTTTCTCATTA+GGG 0.357081 8:+73619824 MsG0880046458.01.T01:CDS
GCCAGAGATGACGACGAAAA+AGG 0.358142 8:+73618130 MsG0880046458.01.T01:CDS
ATCTCTGGCACGCTTCTGAT+TGG 0.363015 8:-73618116 None:intergenic
CACTCACTGCACTCAATGTC+TGG 0.374977 8:-73620024 None:intergenic
AAATTGGGTTACAAAACTTT+CGG 0.375837 8:+73618220 MsG0880046458.01.T01:CDS
ATGTAGGATGCTTGCGAACT+TGG 0.378769 8:-73619794 None:intergenic
GAATATGATCCACACATTTA+CGG 0.416271 8:-73619875 None:intergenic
CATCGAGGTGCTGGTGGAAG+AGG 0.436207 8:+73619969 MsG0880046458.01.T01:CDS
CCATCAGGTCCTGTGAAATT+GGG 0.448379 8:+73618205 MsG0880046458.01.T01:CDS
CACTTGCATTGCTTCTGGCA+AGG 0.456631 8:-73619901 None:intergenic
TGAGTGATTACTGCTGATCT+TGG 0.461222 8:+73620041 MsG0880046458.01.T01:three_prime_UTR
CATGATGCAAACAGAGCATT+GGG 0.462963 8:+73619927 MsG0880046458.01.T01:CDS
ACCTTGTTAACATTAAGATT+AGG 0.475911 8:-73618295 None:intergenic
ACTTGCATTGCTTCTGGCAA+GGG 0.488485 8:-73619900 None:intergenic
ACAGCGACGATTTCTGGTTC+CGG 0.491379 8:-73618025 None:intergenic
CCCAATTTCACAGGACCTGA+TGG 0.504047 8:-73618205 None:intergenic
AAAAGAAAGCATCGAGGTGC+TGG 0.509151 8:+73619960 MsG0880046458.01.T01:CDS
TTACTAGAATTGCTTATGAA+AGG 0.517998 8:+73619726 MsG0880046458.01.T01:CDS
GAAGAAGAGATGAAACCATC+AGG 0.518223 8:+73618190 MsG0880046458.01.T01:CDS
AATGACGGAAACCGCTGCAC+CGG 0.523742 8:+73618006 MsG0880046458.01.T01:exon
GCAAAAGGTGGAAGCAGAGG+TGG 0.532733 8:+73618165 MsG0880046458.01.T01:CDS
AGGTGTTTCCAAGAAGCAAA+AGG 0.542393 8:+73618150 MsG0880046458.01.T01:CDS
ATACTACATCTACTAGTAGC+AGG 0.543266 8:-73620123 None:intergenic
AAGTTCGCAAGCATCCTACA+TGG 0.544290 8:+73619796 MsG0880046458.01.T01:CDS
ACATGATGCAAACAGAGCAT+TGG 0.559557 8:+73619926 MsG0880046458.01.T01:CDS
GAAGCAAAAGGTGGAAGCAG+AGG 0.563614 8:+73618162 MsG0880046458.01.T01:CDS
CGAGGTGCTGGTGGAAGAGG+AGG 0.573526 8:+73619972 MsG0880046458.01.T01:CDS
AACAAAATACAGAAAAGTCT+AGG 0.576361 8:-73620285 None:intergenic
TCCTAATCTTAATGTTAACA+AGG 0.576772 8:+73618294 MsG0880046458.01.T01:CDS
AGGAGGTACACATGGACGTG+GGG 0.584945 8:+73619989 MsG0880046458.01.T01:CDS
TATTGAAAACGCTGAACTCG+CGG 0.587289 8:+73618057 MsG0880046458.01.T01:CDS
GTGTTTCTTTCTCATTAGGG+AGG 0.599803 8:+73619827 MsG0880046458.01.T01:CDS
GAGGAGGTACACATGGACGT+GGG 0.602359 8:+73619988 MsG0880046458.01.T01:CDS
GATTTCTGGTTCCGGTGCAG+CGG 0.603810 8:-73618017 None:intergenic
AGAAATCGTCGCTGTAGACA+TGG 0.605806 8:+73618033 MsG0880046458.01.T01:CDS
CAGGAAACATGAAACAAGCT+CGG 0.613319 8:-73620104 None:intergenic
TTCGAATGTGAGAGAGACTG+AGG 0.621482 8:-73617979 None:intergenic
AGAAAGCATCGAGGTGCTGG+TGG 0.622028 8:+73619963 MsG0880046458.01.T01:CDS
AGAGGAGGTACACATGGACG+TGG 0.625090 8:+73619987 MsG0880046458.01.T01:CDS
ATGTGAGAGAGACTGAGGGA+GGG 0.647855 8:-73617974 None:intergenic
GGAGGTACACATGGACGTGG+GGG 0.649144 8:+73619990 MsG0880046458.01.T01:CDS
TGTTTCCAAGAAGCAAAAGG+TGG 0.653047 8:+73618153 MsG0880046458.01.T01:CDS
AATGTGAGAGAGACTGAGGG+AGG 0.658113 8:-73617975 None:intergenic
GGTGGAAGAGGAGGTACACA+TGG 0.663515 8:+73619981 MsG0880046458.01.T01:CDS
TCGAATGTGAGAGAGACTGA+GGG 0.667603 8:-73617978 None:intergenic
GATGCAAACAGAGCATTGGG+TGG 0.682793 8:+73619930 MsG0880046458.01.T01:CDS
TGAAAACGCTGAACTCGCGG+AGG 0.694646 8:+73618060 MsG0880046458.01.T01:CDS
TGAACTCGCGGAGGTTAACG+CGG 0.696148 8:+73618069 MsG0880046458.01.T01:CDS
TCTGGTAAAAGAAAGCATCG+AGG 0.799067 8:+73619954 MsG0880046458.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAATATCTTATTA+CGG + Chr8:73618448-73618467 MsG0880046458.01.T01:intron 10.0%
!! AAATCTCAATTTACAAATTA+GGG - Chr8:73619558-73619577 None:intergenic 15.0%
!! GTTAGTAACAAAAAAATATT+AGG - Chr8:73619660-73619679 None:intergenic 15.0%
!!! AATATTTTTTTGTTACTAAC+TGG + Chr8:73619660-73619679 MsG0880046458.01.T01:intron 15.0%
!!! ATATTTTTTTGTTACTAACT+GGG + Chr8:73619661-73619680 MsG0880046458.01.T01:intron 15.0%
!! CAACTAAAAAATTGTATTGA+AGG + Chr8:73619074-73619093 MsG0880046458.01.T01:intron 20.0%
!! GAAACACTAAAAACAAAATA+AGG - Chr8:73619309-73619328 None:intergenic 20.0%
!! GAAATCTCAATTTACAAATT+AGG - Chr8:73619559-73619578 None:intergenic 20.0%
!! TAAAAAATTGTATTGAAGGA+GGG + Chr8:73619078-73619097 MsG0880046458.01.T01:intron 20.0%
!!! TTTGACTTTTTTATTTCATG+TGG + Chr8:73620161-73620180 MsG0880046458.01.T01:three_prime_UTR 20.0%
! AAATTGGGTTACAAAACTTT+CGG + Chr8:73618220-73618239 MsG0880046458.01.T01:CDS 25.0%
! AACAAAATACAGAAAAGTCT+AGG - Chr8:73620288-73620307 None:intergenic 25.0%
! ACATCAAAATGTCAAATCAA+GGG - Chr8:73618362-73618381 None:intergenic 25.0%
! ACCAACATCAATACAAAATA+AGG - Chr8:73618477-73618496 None:intergenic 25.0%
! ACCTTGTTAACATTAAGATT+AGG - Chr8:73618298-73618317 None:intergenic 25.0%
! ATAATGTTACTGATCTTTCA+AGG + Chr8:73618668-73618687 MsG0880046458.01.T01:intron 25.0%
! CCAACATCAATACAAAATAA+GGG - Chr8:73618476-73618495 None:intergenic 25.0%
! CTAAAAAATTGTATTGAAGG+AGG + Chr8:73619077-73619096 MsG0880046458.01.T01:intron 25.0%
! TCCTAATCTTAATGTTAACA+AGG + Chr8:73618294-73618313 MsG0880046458.01.T01:CDS 25.0%
! TTACTAGAATTGCTTATGAA+AGG + Chr8:73619726-73619745 MsG0880046458.01.T01:CDS 25.0%
!! GTTTTGTACAATGAAGAAAA+AGG - Chr8:73619039-73619058 None:intergenic 25.0%
!! TTTGTATTGATGTTGGTTAT+GGG + Chr8:73618480-73618499 MsG0880046458.01.T01:intron 25.0%
!!! ATAATTTTAGCAAAGGATCA+GGG - Chr8:73620198-73620217 None:intergenic 25.0%
!!! TGAAGACATAATTTTAGCAA+AGG - Chr8:73620205-73620224 None:intergenic 25.0%
!!! TTTAGTAGTGTTGATGTAAA+GGG + Chr8:73618613-73618632 MsG0880046458.01.T01:intron 25.0%
!!! TTTTGTATTGATGTTGGTTA+TGG + Chr8:73618479-73618498 MsG0880046458.01.T01:intron 25.0%
!!! TTTTTTAGTTGCTTCAAATG+AGG - Chr8:73619065-73619084 None:intergenic 25.0%
AGAGAATTTGAATATTCCAC+AGG + Chr8:73619433-73619452 MsG0880046458.01.T01:intron 30.0%
ATTACAAAGCCTAAAATGAG+AGG + Chr8:73619226-73619245 MsG0880046458.01.T01:intron 30.0%
CAAGTGTTTCTTTCTCATTA+GGG + Chr8:73619824-73619843 MsG0880046458.01.T01:CDS 30.0%
CACATCAAAATGTCAAATCA+AGG - Chr8:73618363-73618382 None:intergenic 30.0%
CACTTATATATCTACATGTC+AGG + Chr8:73619502-73619521 MsG0880046458.01.T01:intron 30.0%
CTTTGTAATTTACCCAATCA+AGG - Chr8:73619215-73619234 None:intergenic 30.0%
GAATATGATCCACACATTTA+CGG - Chr8:73619878-73619897 None:intergenic 30.0%
GAGAATTTGAATATTCCACA+GGG + Chr8:73619434-73619453 MsG0880046458.01.T01:intron 30.0%
TCACATTCGAACAAAAATGA+CGG + Chr8:73617991-73618010 MsG0880046458.01.T01:exon 30.0%
TGCATATTTGTGAATTGGAT+GGG + Chr8:73618638-73618657 MsG0880046458.01.T01:intron 30.0%
TTAGTGTTTCCATGAATTGA+GGG + Chr8:73619319-73619338 MsG0880046458.01.T01:intron 30.0%
TTGCATATTTGTGAATTGGA+TGG + Chr8:73618637-73618656 MsG0880046458.01.T01:intron 30.0%
TTTAGTGTTTCCATGAATTG+AGG + Chr8:73619318-73619337 MsG0880046458.01.T01:intron 30.0%
! TTTCCACCAATCTTTTTATC+AGG - Chr8:73619762-73619781 None:intergenic 30.0%
! TTTTTGTGATTGCCTTGATT+GGG + Chr8:73619200-73619219 MsG0880046458.01.T01:intron 30.0%
!! CATAATTTTAGCAAAGGATC+AGG - Chr8:73620199-73620218 None:intergenic 30.0%
!! CTTTAGTAGTGTTGATGTAA+AGG + Chr8:73618612-73618631 MsG0880046458.01.T01:intron 30.0%
!! TGACTTTTGGTTGTTTTATG+TGG + Chr8:73619685-73619704 MsG0880046458.01.T01:intron 30.0%
!! TTAGTAGTGTTGATGTAAAG+GGG + Chr8:73618614-73618633 MsG0880046458.01.T01:intron 30.0%
!!! CCCTTATTTTGTATTGATGT+TGG + Chr8:73618473-73618492 MsG0880046458.01.T01:intron 30.0%
!!! TTTTTTGTGATTGCCTTGAT+TGG + Chr8:73619199-73619218 MsG0880046458.01.T01:intron 30.0%
AAACTCACAAACAAAGCCTT+GGG - Chr8:73618936-73618955 None:intergenic 35.0%
ACTCGCAATCAAAGTCTAAA+AGG - Chr8:73618760-73618779 None:intergenic 35.0%
ATACTACATCTACTAGTAGC+AGG - Chr8:73620126-73620145 None:intergenic 35.0%
ATCTACATGTCAGGATTGAA+CGG + Chr8:73619511-73619530 MsG0880046458.01.T01:intron 35.0%
ATGGAAGAAATAGAGGAGAT+TGG + Chr8:73618992-73619011 MsG0880046458.01.T01:intron 35.0%
ATTAATCCAACATCTGACCT+TGG + Chr8:73619387-73619406 MsG0880046458.01.T01:intron 35.0%
GCAAGTGTTTCTTTCTCATT+AGG + Chr8:73619823-73619842 MsG0880046458.01.T01:CDS 35.0%
TGGAAGAAATAGAGGAGATT+GGG + Chr8:73618993-73619012 MsG0880046458.01.T01:intron 35.0%
TTAGACTTTGATTGCGAGTT+TGG + Chr8:73618761-73618780 MsG0880046458.01.T01:intron 35.0%
! AACAGTTTTCTTCATGCTTG+GGG + Chr8:73618271-73618290 MsG0880046458.01.T01:CDS 35.0%
! CAACAGTTTTCTTCATGCTT+GGG + Chr8:73618270-73618289 MsG0880046458.01.T01:CDS 35.0%
! GTTTTGTAACCCAATTTCAC+AGG - Chr8:73618217-73618236 None:intergenic 35.0%
! TAAAATGAGAGGAAGCACAT+GGG + Chr8:73619237-73619256 MsG0880046458.01.T01:intron 35.0%
! TCAACAGTTTTCTTCATGCT+TGG + Chr8:73618269-73618288 MsG0880046458.01.T01:CDS 35.0%
! TTACTAACTGGGATGACTTT+TGG + Chr8:73619672-73619691 MsG0880046458.01.T01:intron 35.0%
! TTTCCATGAATTGAGGGTTT+TGG + Chr8:73619325-73619344 MsG0880046458.01.T01:intron 35.0%
!! AAACACTTGCTTTTCCATGT+AGG - Chr8:73619813-73619832 None:intergenic 35.0%
!!! TTTTAGCTTCCGTAAATGTG+TGG + Chr8:73619866-73619885 MsG0880046458.01.T01:CDS 35.0%
AAGAAATAGAGGAGATTGGG+AGG + Chr8:73618996-73619015 MsG0880046458.01.T01:intron 40.0%
ACATGATGCAAACAGAGCAT+TGG + Chr8:73619926-73619945 MsG0880046458.01.T01:CDS 40.0%
ACTTTGATTGCGAGTTTGGA+GGG + Chr8:73618765-73618784 MsG0880046458.01.T01:intron 40.0%
AGAAATAGAGGAGATTGGGA+GGG + Chr8:73618997-73619016 MsG0880046458.01.T01:intron 40.0%
AGGTGTTTCCAAGAAGCAAA+AGG + Chr8:73618150-73618169 MsG0880046458.01.T01:CDS 40.0%
AGTCCAAAACCCTCAATTCA+TGG - Chr8:73619331-73619350 None:intergenic 40.0%
CAAAACTTTCGGCTCTTCTT+TGG + Chr8:73618231-73618250 MsG0880046458.01.T01:CDS 40.0%
CAAACTCACAAACAAAGCCT+TGG - Chr8:73618937-73618956 None:intergenic 40.0%
CAGGAAACATGAAACAAGCT+CGG - Chr8:73620107-73620126 None:intergenic 40.0%
CCAGAGCCTGATAAAAAGAT+TGG + Chr8:73619753-73619772 MsG0880046458.01.T01:CDS 40.0%
GAAGAAGAGATGAAACCATC+AGG + Chr8:73618190-73618209 MsG0880046458.01.T01:CDS 40.0%
GAGATTCAGAGTTCAACTCT+TGG + Chr8:73618579-73618598 MsG0880046458.01.T01:intron 40.0%
GAGCCTGATAAAAAGATTGG+TGG + Chr8:73619756-73619775 MsG0880046458.01.T01:CDS 40.0%
GGGGTTGCATATTTGTGAAT+TGG + Chr8:73618633-73618652 MsG0880046458.01.T01:intron 40.0%
GTGTTTCTTTCTCATTAGGG+AGG + Chr8:73619827-73619846 MsG0880046458.01.T01:CDS 40.0%
TATTGAAAACGCTGAACTCG+CGG + Chr8:73618057-73618076 MsG0880046458.01.T01:CDS 40.0%
TCTACATGTCAGGATTGAAC+GGG + Chr8:73619512-73619531 MsG0880046458.01.T01:intron 40.0%
TGAGTGATTACTGCTGATCT+TGG + Chr8:73620041-73620060 MsG0880046458.01.T01:three_prime_UTR 40.0%
TGTTTCACTTGCATTGCTTC+TGG - Chr8:73619909-73619928 None:intergenic 40.0%
TGTTTCCAAGAAGCAAAAGG+TGG + Chr8:73618153-73618172 MsG0880046458.01.T01:CDS 40.0%
TTTCCGAACAAAACAGAGCA+CGG - Chr8:73618518-73618537 None:intergenic 40.0%
TTTGAAAAGGAAGGGGCAAA+TGG + Chr8:73618973-73618992 MsG0880046458.01.T01:intron 40.0%
TTTGTGAGTTTGGAGGGTAA+GGG + Chr8:73618945-73618964 MsG0880046458.01.T01:intron 40.0%
! CATGATGCAAACAGAGCATT+GGG + Chr8:73619927-73619946 MsG0880046458.01.T01:CDS 40.0%
! CATGTGCTTCCTCTCATTTT+AGG - Chr8:73619238-73619257 None:intergenic 40.0%
! CCAATCTTTTTATCAGGCTC+TGG - Chr8:73619756-73619775 None:intergenic 40.0%
! CTAAAATGAGAGGAAGCACA+TGG + Chr8:73619236-73619255 MsG0880046458.01.T01:intron 40.0%
!! AGAATCCCTCACTTTTATCG+GGG - Chr8:73618854-73618873 None:intergenic 40.0%
!! CAAGGCTTTGTTTGTGAGTT+TGG + Chr8:73618935-73618954 MsG0880046458.01.T01:intron 40.0%
!! GAGAATCCCTCACTTTTATC+GGG - Chr8:73618855-73618874 None:intergenic 40.0%
!! GCTTTGTTTGTGAGTTTGGA+GGG + Chr8:73618939-73618958 MsG0880046458.01.T01:intron 40.0%
!! GGAGAATCCCTCACTTTTAT+CGG - Chr8:73618856-73618875 None:intergenic 40.0%
!! GTATTGAAGGAGGGTTTTGA+CGG + Chr8:73619087-73619106 MsG0880046458.01.T01:intron 40.0%
!! TATTGAAGGAGGGTTTTGAC+GGG + Chr8:73619088-73619107 MsG0880046458.01.T01:intron 40.0%
!! TCTGGTAAAAGAAAGCATCG+AGG + Chr8:73619954-73619973 MsG0880046458.01.T01:CDS 40.0%
!!! TTCAAGGCTGTGTTTTGAAG+AGG + Chr8:73618684-73618703 MsG0880046458.01.T01:intron 40.0%
AAACCATATCACAGTCCCTG+TGG - Chr8:73619452-73619471 None:intergenic 45.0%
AAGGGGCGAAAAGGAAACAT+AGG - Chr8:73618877-73618896 None:intergenic 45.0%
AAGTTCGCAAGCATCCTACA+TGG + Chr8:73619796-73619815 MsG0880046458.01.T01:CDS 45.0%
ACCATCAGGTCCTGTGAAAT+TGG + Chr8:73618204-73618223 MsG0880046458.01.T01:CDS 45.0%
ACTTGCATTGCTTCTGGCAA+GGG - Chr8:73619903-73619922 None:intergenic 45.0%
AGAAATCGTCGCTGTAGACA+TGG + Chr8:73618033-73618052 MsG0880046458.01.T01:CDS 45.0%
AGACTCCCCGATAAAAGTGA+GGG + Chr8:73618846-73618865 MsG0880046458.01.T01:intron 45.0%
ATGTAGGATGCTTGCGAACT+TGG - Chr8:73619797-73619816 None:intergenic 45.0%
ATGTCTACAGCGACGATTTC+TGG - Chr8:73618034-73618053 None:intergenic 45.0%
ATTCCACAGGGACTGTGATA+TGG + Chr8:73619446-73619465 MsG0880046458.01.T01:intron 45.0%
CAAACAAAGCCTTGGGAGTT+AGG - Chr8:73618929-73618948 None:intergenic 45.0%
CCATCAGGTCCTGTGAAATT+GGG + Chr8:73618205-73618224 MsG0880046458.01.T01:CDS 45.0%
GAAATAGAGGAGATTGGGAG+GGG + Chr8:73618998-73619017 MsG0880046458.01.T01:intron 45.0%
GACTTTGATTGCGAGTTTGG+AGG + Chr8:73618764-73618783 MsG0880046458.01.T01:intron 45.0%
GGGCATTAAGGGTAAAGGAT+AGG + Chr8:73618800-73618819 MsG0880046458.01.T01:intron 45.0%
GGGGCAAATGGAAGAAATAG+AGG + Chr8:73618985-73619004 MsG0880046458.01.T01:intron 45.0%
GTTTGTGAGTTTGGAGGGTA+AGG + Chr8:73618944-73618963 MsG0880046458.01.T01:intron 45.0%
TCGAATGTGAGAGAGACTGA+GGG - Chr8:73617981-73618000 None:intergenic 45.0%
TTCGAATGTGAGAGAGACTG+AGG - Chr8:73617982-73618001 None:intergenic 45.0%
TTGTGAGTTTGGAGGGTAAG+GGG + Chr8:73618946-73618965 MsG0880046458.01.T01:intron 45.0%
! TGCTTCCACCTTTTGCTTCT+TGG - Chr8:73618161-73618180 None:intergenic 45.0%
!! AAAAGAAAGCATCGAGGTGC+TGG + Chr8:73619960-73619979 MsG0880046458.01.T01:CDS 45.0%
!! AAAGCGAGATGAGGGCATTA+AGG + Chr8:73618788-73618807 MsG0880046458.01.T01:intron 45.0%
!! AAGCGAGATGAGGGCATTAA+GGG + Chr8:73618789-73618808 MsG0880046458.01.T01:intron 45.0%
!! ACCTTTTTCGTCGTCATCTC+TGG - Chr8:73618134-73618153 None:intergenic 45.0%
!! ACTCCGTGCTCTGTTTTGTT+CGG + Chr8:73618512-73618531 MsG0880046458.01.T01:intron 45.0%
!! GATGAGGGCATTAAGGGTAA+AGG + Chr8:73618795-73618814 MsG0880046458.01.T01:intron 45.0%
!! GGCTTTGTTTGTGAGTTTGG+AGG + Chr8:73618938-73618957 MsG0880046458.01.T01:intron 45.0%
!! TTTTGAAGAGGAAGGGGGTT+AGG + Chr8:73618696-73618715 MsG0880046458.01.T01:intron 45.0%
!!! AGGCTGTGTTTTGAAGAGGA+AGG + Chr8:73618688-73618707 MsG0880046458.01.T01:intron 45.0%
!!! CTGTGTTTTGAAGAGGAAGG+GGG + Chr8:73618691-73618710 MsG0880046458.01.T01:intron 45.0%
!!! GCTGTGTTTTGAAGAGGAAG+GGG + Chr8:73618690-73618709 MsG0880046458.01.T01:intron 45.0%
!!! GGCTGTGTTTTGAAGAGGAA+GGG + Chr8:73618689-73618708 MsG0880046458.01.T01:intron 45.0%
AATGTGAGAGAGACTGAGGG+AGG - Chr8:73617978-73617997 None:intergenic 50.0%
ACAAAGCCTTGGGAGTTAGG+AGG - Chr8:73618926-73618945 None:intergenic 50.0%
ATCTCTGGCACGCTTCTGAT+TGG - Chr8:73618119-73618138 None:intergenic 50.0%
ATGTGAGAGAGACTGAGGGA+GGG - Chr8:73617977-73617996 None:intergenic 50.0%
CAAAGCCTTGGGAGTTAGGA+GGG - Chr8:73618925-73618944 None:intergenic 50.0%
CACTCACTGCACTCAATGTC+TGG - Chr8:73620027-73620046 None:intergenic 50.0%
CACTTGCATTGCTTCTGGCA+AGG - Chr8:73619904-73619923 None:intergenic 50.0%
CCCAATTTCACAGGACCTGA+TGG - Chr8:73618208-73618227 None:intergenic 50.0%
CTTGGGAGTTAGGAGGGAAA+GGG - Chr8:73618919-73618938 None:intergenic 50.0%
GAAGCAAAAGGTGGAAGCAG+AGG + Chr8:73618162-73618181 MsG0880046458.01.T01:CDS 50.0%
GAGACTCCCCGATAAAAGTG+AGG + Chr8:73618845-73618864 MsG0880046458.01.T01:intron 50.0%
GCCAGAGATGACGACGAAAA+AGG + Chr8:73618130-73618149 MsG0880046458.01.T01:CDS 50.0%
TAGGAGGGAAAGGGATGAGA+GGG - Chr8:73618910-73618929 None:intergenic 50.0%
TCCAACATCTGACCTTGGAC+TGG + Chr8:73619392-73619411 MsG0880046458.01.T01:intron 50.0%
TCCAGTCCAAGGTCAGATGT+TGG - Chr8:73619396-73619415 None:intergenic 50.0%
TGTGAGTTTGGAGGGTAAGG+GGG + Chr8:73618947-73618966 MsG0880046458.01.T01:intron 50.0%
TTAGGAGGGAAAGGGATGAG+AGG - Chr8:73618911-73618930 None:intergenic 50.0%
TTGGAGGGAAAGCGAGATGA+GGG + Chr8:73618780-73618799 MsG0880046458.01.T01:intron 50.0%
TTTGGAGGAAAGGGGCGAAA+AGG - Chr8:73618886-73618905 None:intergenic 50.0%
TTTGGAGGGAAAGCGAGATG+AGG + Chr8:73618779-73618798 MsG0880046458.01.T01:intron 50.0%
! AGGGGGGACTTTGAAAAGGA+AGG + Chr8:73618964-73618983 MsG0880046458.01.T01:intron 50.0%
! GGGGGACTTTGAAAAGGAAG+GGG + Chr8:73618966-73618985 MsG0880046458.01.T01:intron 50.0%
! GGGGGGACTTTGAAAAGGAA+GGG + Chr8:73618965-73618984 MsG0880046458.01.T01:intron 50.0%
! GGTAAGGGGGGACTTTGAAA+AGG + Chr8:73618960-73618979 MsG0880046458.01.T01:intron 50.0%
! TTGGACTGGATTGAGCTGCA+GGG + Chr8:73619406-73619425 MsG0880046458.01.T01:intron 50.0%
!! AACAGAGCATTGGGTGGTTC+TGG + Chr8:73619936-73619955 MsG0880046458.01.T01:CDS 50.0%
!! ACAGCGACGATTTCTGGTTC+CGG - Chr8:73618028-73618047 None:intergenic 50.0%
!! ATGAGAGGGCTTTGGAGGAA+AGG - Chr8:73618896-73618915 None:intergenic 50.0%
!! GATGCAAACAGAGCATTGGG+TGG + Chr8:73619930-73619949 MsG0880046458.01.T01:CDS 50.0%
!! TGAGAGGGCTTTGGAGGAAA+GGG - Chr8:73618895-73618914 None:intergenic 50.0%
!!! AGGAGGGTTTTGACGGGTTT+TGG + Chr8:73619094-73619113 MsG0880046458.01.T01:intron 50.0%
!!! AGGGTTTTGACGGGTTTTGG+AGG + Chr8:73619097-73619116 MsG0880046458.01.T01:intron 50.0%
!!! GGGTTTTGACGGGTTTTGGA+GGG + Chr8:73619098-73619117 MsG0880046458.01.T01:intron 50.0%
ACACATGGACGTGGGGGAAA+GGG + Chr8:73619996-73620015 MsG0880046458.01.T01:CDS 55.0%
CCTTGGGAGTTAGGAGGGAA+AGG - Chr8:73618920-73618939 None:intergenic 55.0%
CCTTTCCCTCCTAACTCCCA+AGG + Chr8:73618917-73618936 MsG0880046458.01.T01:intron 55.0%
CTGCAGCTCAATCCAGTCCA+AGG - Chr8:73619407-73619426 None:intergenic 55.0%
GCAAAAGGTGGAAGCAGAGG+TGG + Chr8:73618165-73618184 MsG0880046458.01.T01:CDS 55.0%
GGAAAGGGATGAGAGGGCTT+TGG - Chr8:73618904-73618923 None:intergenic 55.0%
GTGAGTTTGGAGGGTAAGGG+GGG + Chr8:73618948-73618967 MsG0880046458.01.T01:intron 55.0%
TACACATGGACGTGGGGGAA+AGG + Chr8:73619995-73620014 MsG0880046458.01.T01:CDS 55.0%
TGAAAACGCTGAACTCGCGG+AGG + Chr8:73618060-73618079 MsG0880046458.01.T01:CDS 55.0%
TGAACTCGCGGAGGTTAACG+CGG + Chr8:73618069-73618088 MsG0880046458.01.T01:CDS 55.0%
TGAAGAGGAAGGGGGTTAGG+AGG + Chr8:73618699-73618718 MsG0880046458.01.T01:intron 55.0%
! AAGGGATGAGAGGGCTTTGG+AGG - Chr8:73618901-73618920 None:intergenic 55.0%
! AATGACGGAAACCGCTGCAC+CGG + Chr8:73618006-73618025 MsG0880046458.01.T01:exon 55.0%
! AGAGGAGGTACACATGGACG+TGG + Chr8:73619987-73620006 MsG0880046458.01.T01:CDS 55.0%
! AGGAGGTACACATGGACGTG+GGG + Chr8:73619989-73620008 MsG0880046458.01.T01:CDS 55.0%
! CTTGGACTGGATTGAGCTGC+AGG + Chr8:73619405-73619424 MsG0880046458.01.T01:intron 55.0%
! GAGGAGGTACACATGGACGT+GGG + Chr8:73619988-73620007 MsG0880046458.01.T01:CDS 55.0%
! GGTGGAAGAGGAGGTACACA+TGG + Chr8:73619981-73620000 MsG0880046458.01.T01:CDS 55.0%
!! AGAAAGCATCGAGGTGCTGG+TGG + Chr8:73619963-73619982 MsG0880046458.01.T01:CDS 55.0%
!! GAGAGGGCTTTGGAGGAAAG+GGG - Chr8:73618894-73618913 None:intergenic 55.0%
!! GATTTCTGGTTCCGGTGCAG+CGG - Chr8:73618020-73618039 None:intergenic 55.0%
AAGGGGGTTAGGAGGACAGG+CGG + Chr8:73618707-73618726 MsG0880046458.01.T01:intron 60.0%
AGGAAGGGGGTTAGGAGGAC+AGG + Chr8:73618704-73618723 MsG0880046458.01.T01:intron 60.0%
! GGAGGTACACATGGACGTGG+GGG + Chr8:73619990-73620009 MsG0880046458.01.T01:CDS 60.0%
!! CATCGAGGTGCTGGTGGAAG+AGG + Chr8:73619969-73619988 MsG0880046458.01.T01:CDS 60.0%
!! CGAGGTGCTGGTGGAAGAGG+AGG + Chr8:73619972-73619991 MsG0880046458.01.T01:CDS 65.0%
GAGGACAGGCGGCGAGCAGA+GGG + Chr8:73618718-73618737 MsG0880046458.01.T01:intron 70.0%
GGAGGACAGGCGGCGAGCAG+AGG + Chr8:73618717-73618736 MsG0880046458.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 73617964 73620370 73617964 ID=MsG0880046458.01;Name=MsG0880046458.01
Chr8 mRNA 73617964 73620370 73617964 ID=MsG0880046458.01.T01;Parent=MsG0880046458.01;Name=MsG0880046458.01.T01;_AED=0.29;_eAED=0.29;_QI=43|1|1|1|1|1|2|336|210
Chr8 exon 73617964 73618315 73617964 ID=MsG0880046458.01.T01:exon:7945;Parent=MsG0880046458.01.T01
Chr8 exon 73619711 73620370 73619711 ID=MsG0880046458.01.T01:exon:7946;Parent=MsG0880046458.01.T01
Chr8 five_prime_UTR 73617964 73618006 73617964 ID=MsG0880046458.01.T01:five_prime_utr;Parent=MsG0880046458.01.T01
Chr8 CDS 73618007 73618315 73618007 ID=MsG0880046458.01.T01:cds;Parent=MsG0880046458.01.T01
Chr8 CDS 73619711 73620034 73619711 ID=MsG0880046458.01.T01:cds;Parent=MsG0880046458.01.T01
Chr8 three_prime_UTR 73620035 73620370 73620035 ID=MsG0880046458.01.T01:three_prime_utr;Parent=MsG0880046458.01.T01
Gene Sequence

>MsG0880046458.01.T01

ATGACGGAAACCGCTGCACCGGAACCAGAAATCGTCGCTGTAGACATGGTTATTGAAAACGCTGAACTCGCGGAGGTTAACGCGGTCGATTCAGAAGCGAACGACGAGTCCAATCAGAAGCGTGCCAGAGATGACGACGAAAAAGGTGTTTCCAAGAAGCAAAAGGTGGAAGCAGAGGTGGAAGAAGAAGAGATGAAACCATCAGGTCCTGTGAAATTGGGTTACAAAACTTTCGGCTCTTCTTTGGAGTTGTTCGATTATTTCAACAGTTTTCTTCATGCTTGGGGTCCTAATCTTAATGTTAACAAGTATGAACATGCAATGTTACTAGAATTGCTTATGAAAGGTCATCCAGAGCCTGATAAAAAGATTGGTGGAAAAATCTGTGCTTTCCAAGTTCGCAAGCATCCTACATGGAAAAGCAAGTGTTTCTTTCTCATTAGGGAGGATGAATCAGCTGATGATTTTAGCTTCCGTAAATGTGTGGATCATATTCTTCCCTTGCCAGAAGCAATGCAAGTGAAACATGATGCAAACAGAGCATTGGGTGGTTCTGGTAAAAGAAAGCATCGAGGTGCTGGTGGAAGAGGAGGTACACATGGACGTGGGGGAAAGGGAAAGTCCAGACATTGA

Protein sequence

>MsG0880046458.01.T01

MTETAAPEPEIVAVDMVIENAELAEVNAVDSEANDESNQKRARDDDEKGVSKKQKVEAEVEEEEMKPSGPVKLGYKTFGSSLELFDYFNSFLHAWGPNLNVNKYEHAMLLELLMKGHPEPDKKIGGKICAFQVRKHPTWKSKCFFLIREDESADDFSFRKCVDHILPLPEAMQVKHDANRALGGSGKRKHRGAGGRGGTHGRGGKGKSRH*