Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025000.01.T01 | XP_003612072.1 | 95.661 | 484 | 16 | 2 | 1 | 483 | 3 | 482 | 0 | 950 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025000.01.T01 | Q8GW96 | 44.186 | 473 | 220 | 8 | 25 | 485 | 17 | 457 | 5.34E-133 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025000.01.T01 | G7KF10 | 95.661 | 484 | 16 | 2 | 1 | 483 | 3 | 482 | 0.0 | 950 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048112.01 | MsG0580025000.01 | 0.818411 | 1.988309e-52 | 1.487351e-49 |
| MsG0080049066.01 | MsG0580025000.01 | -0.814158 | 1.776204e-51 | 1.182792e-48 |
| MsG0180000306.01 | MsG0580025000.01 | -0.804913 | 1.719538e-49 | 8.976096e-47 |
| MsG0180001264.01 | MsG0580025000.01 | 0.822430 | 2.378420e-53 | 1.990400e-50 |
| MsG0180003757.01 | MsG0580025000.01 | -0.807691 | 4.466659e-50 | 2.504192e-47 |
| MsG0180003779.01 | MsG0580025000.01 | -0.843332 | 1.495360e-58 | 2.332135e-55 |
| MsG0180003904.01 | MsG0580025000.01 | -0.822583 | 2.192147e-53 | 1.842574e-50 |
| MsG0180004322.01 | MsG0580025000.01 | -0.803776 | 2.966631e-49 | 1.503786e-46 |
| MsG0180005291.01 | MsG0580025000.01 | -0.803864 | 2.844685e-49 | 1.445290e-46 |
| MsG0280011016.01 | MsG0580025000.01 | 0.804129 | 2.504787e-49 | 1.281262e-46 |
| MsG0280011301.01 | MsG0580025000.01 | -0.820764 | 5.772387e-53 | 4.608957e-50 |
| MsG0380011693.01 | MsG0580025000.01 | -0.831957 | 1.243552e-55 | 1.370457e-52 |
| MsG0380012281.01 | MsG0580025000.01 | -0.816046 | 6.765697e-52 | 4.743173e-49 |
| MsG0380013921.01 | MsG0580025000.01 | -0.805554 | 1.262342e-49 | 6.698106e-47 |
| MsG0380014864.01 | MsG0580025000.01 | -0.814122 | 1.809228e-51 | 1.203616e-48 |
| MsG0480018626.01 | MsG0580025000.01 | -0.802030 | 6.807602e-49 | 3.300145e-46 |
| MsG0480020938.01 | MsG0580025000.01 | -0.828209 | 1.021038e-54 | 1.008168e-51 |
| MsG0480022584.01 | MsG0580025000.01 | -0.818972 | 1.482825e-52 | 1.126564e-49 |
| MsG0480022765.01 | MsG0580025000.01 | -0.830891 | 2.274106e-55 | 2.428244e-52 |
| MsG0480023187.01 | MsG0580025000.01 | -0.804498 | 2.098554e-49 | 1.083651e-46 |
| MsG0580024135.01 | MsG0580025000.01 | -0.802041 | 6.771973e-49 | 3.283796e-46 |
| MsG0580024140.01 | MsG0580025000.01 | -0.809574 | 1.769223e-50 | 1.042556e-47 |
| MsG0580024309.01 | MsG0580025000.01 | -0.810074 | 1.381097e-50 | 8.245963e-48 |
| MsG0580024571.01 | MsG0580025000.01 | -0.801089 | 1.061399e-48 | 5.024737e-46 |
| MsG0580024678.01 | MsG0580025000.01 | -0.809041 | 2.301631e-50 | 1.337087e-47 |
| MsG0580025000.01 | MsG0580028510.01 | 0.810695 | 1.014163e-50 | 6.155558e-48 |
| MsG0580025000.01 | MsG0580029172.01 | -0.804537 | 2.059578e-49 | 1.064603e-46 |
| MsG0580025000.01 | MsG0580030181.01 | 0.809832 | 1.556970e-50 | 9.237543e-48 |
| MsG0580025000.01 | MsG0680030635.01 | -0.844720 | 6.346448e-59 | 1.033765e-55 |
| MsG0580025000.01 | MsG0680034229.01 | -0.810812 | 9.569211e-51 | 5.826033e-48 |
| MsG0580025000.01 | MsG0780036064.01 | -0.805479 | 1.308622e-49 | 6.930593e-47 |
| MsG0580025000.01 | MsG0780039821.01 | -0.826032 | 3.387818e-54 | 3.140675e-51 |
| MsG0580025000.01 | MsG0780039836.01 | -0.800531 | 1.379427e-48 | 6.438127e-46 |
| MsG0580025000.01 | MsG0780040072.01 | -0.825812 | 3.821789e-54 | 3.520977e-51 |
| MsG0580025000.01 | MsG0780040121.01 | -0.809646 | 1.707494e-50 | 1.008123e-47 |
| MsG0580025000.01 | MsG0780040621.01 | 0.829009 | 6.539892e-55 | 6.609087e-52 |
| MsG0580025000.01 | MsG0780040685.01 | -0.832095 | 1.149032e-55 | 1.271322e-52 |
| MsG0580025000.01 | MsG0780041106.01 | -0.804979 | 1.665185e-49 | 8.706731e-47 |
| MsG0580025000.01 | MsG0780041172.01 | 0.808551 | 2.929467e-50 | 1.679971e-47 |
| MsG0580025000.01 | MsG0780041426.01 | 0.813511 | 2.466482e-51 | 1.613965e-48 |
| MsG0580025000.01 | MsG0780041620.01 | -0.807901 | 4.029727e-50 | 2.271610e-47 |
| MsG0580025000.01 | MsG0780041720.01 | -0.838253 | 3.209517e-57 | 4.274155e-54 |
| MsG0580025000.01 | MsG0780041783.01 | -0.809330 | 1.995405e-50 | 1.168224e-47 |
| MsG0580025000.01 | MsG0880043304.01 | 0.800244 | 1.578552e-48 | 7.313952e-46 |
| MsG0580025000.01 | MsG0880043317.01 | 0.804382 | 2.218566e-49 | 1.142275e-46 |
| MsG0580025000.01 | MsG0880045413.01 | -0.817150 | 3.829206e-52 | 2.766662e-49 |
| MsG0580025000.01 | MsG0880045414.01 | -0.800770 | 1.233025e-48 | 5.789657e-46 |
| MsG0580025000.01 | MsG0880046040.01 | -0.809657 | 1.697944e-50 | 1.002776e-47 |
| MsG0580025000.01 | MsG0880047318.01 | -0.811300 | 7.501779e-51 | 4.626538e-48 |
| MsG0380015616.01 | MsG0580025000.01 | 0.808374 | 3.196565e-50 | 1.824685e-47 |
| MsG0380016255.01 | MsG0580025000.01 | 0.811488 | 6.827109e-51 | 4.231762e-48 |
| MsG0380016456.01 | MsG0580025000.01 | -0.814653 | 1.381096e-51 | 9.320889e-49 |
| MsG0380016835.01 | MsG0580025000.01 | -0.803352 | 3.631690e-49 | 1.820894e-46 |
| MsG0380016931.01 | MsG0580025000.01 | -0.830599 | 2.681679e-55 | 2.838723e-52 |
| MsG0380016932.01 | MsG0580025000.01 | -0.811869 | 5.642517e-51 | 3.532718e-48 |
| MsG0380016934.01 | MsG0580025000.01 | -0.824320 | 8.605958e-54 | 7.596491e-51 |
| MsG0380016935.01 | MsG0580025000.01 | -0.817404 | 3.356356e-52 | 2.442020e-49 |
| MsG0380016960.01 | MsG0580025000.01 | -0.808112 | 3.635027e-50 | 2.060635e-47 |
| MsG0380017141.01 | MsG0580025000.01 | -0.803287 | 3.746891e-49 | 1.875516e-46 |
| MsG0380017214.01 | MsG0580025000.01 | -0.822193 | 2.700770e-53 | 2.244638e-50 |
| MsG0380017962.01 | MsG0580025000.01 | -0.823935 | 1.059244e-53 | 9.249879e-51 |
| MsG0380018072.01 | MsG0580025000.01 | -0.820992 | 5.115768e-53 | 4.111150e-50 |
| MsG0280007216.01 | MsG0580025000.01 | 0.810823 | 9.515319e-51 | 5.795096e-48 |
| MsG0280009167.01 | MsG0580025000.01 | 0.823187 | 1.585192e-53 | 1.355266e-50 |
| MsG0280010143.01 | MsG0580025000.01 | -0.801962 | 7.030277e-49 | 3.402105e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025000.01.T01 | MTR_5g020990 | 95.661 | 484 | 16 | 2 | 1 | 483 | 3 | 482 | 0.0 | 950 |
| MsG0580025000.01.T01 | MTR_5g021020 | 58.664 | 479 | 122 | 10 | 1 | 472 | 1 | 410 | 5.08e-179 | 508 |
| MsG0580025000.01.T01 | MTR_3g103150 | 79.381 | 291 | 50 | 2 | 182 | 472 | 1 | 281 | 2.14e-166 | 471 |
| MsG0580025000.01.T01 | MTR_5g020980 | 40.552 | 471 | 242 | 8 | 18 | 473 | 9 | 456 | 1.27e-122 | 368 |
| MsG0580025000.01.T01 | MTR_8g076920 | 40.860 | 465 | 236 | 6 | 14 | 466 | 15 | 452 | 2.27e-120 | 362 |
| MsG0580025000.01.T01 | MTR_2g076690 | 41.739 | 460 | 228 | 8 | 33 | 484 | 21 | 448 | 3.73e-116 | 350 |
| MsG0580025000.01.T01 | MTR_2g076970 | 41.215 | 461 | 234 | 8 | 33 | 484 | 14 | 446 | 1.42e-113 | 343 |
| MsG0580025000.01.T01 | MTR_2g076900 | 40.909 | 462 | 241 | 8 | 33 | 485 | 14 | 452 | 6.05e-112 | 339 |
| MsG0580025000.01.T01 | MTR_2g076920 | 41.372 | 452 | 230 | 8 | 33 | 479 | 20 | 441 | 1.27e-111 | 338 |
| MsG0580025000.01.T01 | MTR_2g076710 | 41.348 | 445 | 226 | 8 | 33 | 467 | 19 | 438 | 3.69e-111 | 336 |
| MsG0580025000.01.T01 | MTR_2g076840 | 41.228 | 456 | 233 | 7 | 33 | 481 | 14 | 441 | 1.48e-110 | 343 |
| MsG0580025000.01.T01 | MTR_2g076840 | 51.095 | 274 | 119 | 3 | 196 | 467 | 443 | 703 | 1.53e-82 | 270 |
| MsG0580025000.01.T01 | MTR_2g076990 | 41.565 | 409 | 206 | 6 | 80 | 479 | 2 | 386 | 8.63e-100 | 307 |
| MsG0580025000.01.T01 | MTR_1g022250 | 38.562 | 459 | 254 | 8 | 23 | 467 | 7 | 451 | 7.63e-97 | 300 |
| MsG0580025000.01.T01 | MTR_2g030420 | 37.885 | 454 | 259 | 8 | 23 | 467 | 10 | 449 | 8.07e-96 | 298 |
| MsG0580025000.01.T01 | MTR_6g009553 | 37.744 | 461 | 234 | 9 | 43 | 467 | 5 | 448 | 3.59e-93 | 291 |
| MsG0580025000.01.T01 | MTR_6g009720 | 38.618 | 492 | 248 | 14 | 5 | 466 | 1 | 468 | 3.91e-93 | 292 |
| MsG0580025000.01.T01 | MTR_6g009770 | 40.049 | 412 | 206 | 8 | 85 | 467 | 48 | 447 | 1.37e-91 | 288 |
| MsG0580025000.01.T01 | MTR_6g009540 | 37.045 | 467 | 259 | 9 | 24 | 467 | 5 | 459 | 1.40e-90 | 286 |
| MsG0580025000.01.T01 | MTR_7g008040 | 36.730 | 471 | 258 | 8 | 22 | 467 | 5 | 460 | 4.62e-90 | 285 |
| MsG0580025000.01.T01 | MTR_6g009520 | 36.831 | 467 | 260 | 8 | 24 | 467 | 7 | 461 | 2.66e-88 | 280 |
| MsG0580025000.01.T01 | MTR_1g022245 | 37.650 | 417 | 212 | 8 | 81 | 467 | 63 | 461 | 3.06e-86 | 274 |
| MsG0580025000.01.T01 | MTR_4g107370 | 34.137 | 498 | 269 | 12 | 22 | 479 | 10 | 488 | 3.52e-86 | 274 |
| MsG0580025000.01.T01 | MTR_6g042290 | 39.394 | 396 | 204 | 8 | 84 | 467 | 80 | 451 | 3.09e-85 | 271 |
| MsG0580025000.01.T01 | MTR_2g061820 | 37.981 | 416 | 217 | 10 | 83 | 483 | 67 | 456 | 5.63e-85 | 271 |
| MsG0580025000.01.T01 | MTR_4g128260 | 34.354 | 457 | 257 | 8 | 20 | 452 | 6 | 443 | 8.11e-84 | 268 |
| MsG0580025000.01.T01 | MTR_6g009510 | 37.722 | 395 | 171 | 7 | 82 | 467 | 78 | 406 | 1.97e-75 | 244 |
| MsG0580025000.01.T01 | MTR_5g021000 | 85.366 | 123 | 18 | 0 | 363 | 485 | 1 | 123 | 1.42e-69 | 219 |
| MsG0580025000.01.T01 | MTR_7g117950 | 33.791 | 364 | 185 | 9 | 109 | 467 | 93 | 405 | 9.41e-66 | 219 |
| MsG0580025000.01.T01 | MTR_3g092060 | 34.795 | 365 | 182 | 10 | 112 | 467 | 97 | 414 | 1.67e-64 | 217 |
| MsG0580025000.01.T01 | MTR_6g009660 | 35.946 | 370 | 185 | 8 | 114 | 467 | 78 | 411 | 6.37e-63 | 212 |
| MsG0580025000.01.T01 | MTR_5g020720 | 59.686 | 191 | 52 | 4 | 282 | 472 | 25 | 190 | 2.29e-61 | 199 |
| MsG0580025000.01.T01 | MTR_5g021010 | 87.500 | 88 | 11 | 0 | 380 | 467 | 34 | 121 | 3.56e-47 | 159 |
| MsG0580025000.01.T01 | MTR_8g027200 | 28.103 | 427 | 216 | 13 | 55 | 467 | 39 | 388 | 2.12e-45 | 165 |
| MsG0580025000.01.T01 | MTR_1g011680 | 41.129 | 124 | 71 | 1 | 346 | 469 | 12 | 133 | 4.65e-23 | 96.3 |
| MsG0580025000.01.T01 | MTR_3g117230 | 31.902 | 163 | 88 | 6 | 249 | 404 | 166 | 312 | 1.59e-11 | 66.2 |
| MsG0580025000.01.T01 | MTR_3g112260 | 31.288 | 163 | 89 | 6 | 249 | 404 | 163 | 309 | 2.66e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025000.01.T01 | AT2G18193 | 44.186 | 473 | 220 | 8 | 25 | 485 | 17 | 457 | 5.45e-134 | 397 |
| MsG0580025000.01.T01 | AT2G18190 | 43.515 | 478 | 226 | 8 | 12 | 474 | 4 | 452 | 1.63e-131 | 390 |
| MsG0580025000.01.T01 | AT3G50940 | 44.469 | 461 | 231 | 6 | 10 | 467 | 3 | 441 | 7.09e-130 | 384 |
| MsG0580025000.01.T01 | AT5G17760 | 43.197 | 463 | 247 | 5 | 15 | 471 | 6 | 458 | 4.23e-123 | 369 |
| MsG0580025000.01.T01 | AT5G17730 | 42.919 | 459 | 241 | 7 | 12 | 467 | 3 | 443 | 1.57e-120 | 361 |
| MsG0580025000.01.T01 | AT5G17740 | 43.137 | 459 | 241 | 7 | 15 | 467 | 6 | 450 | 1.26e-119 | 361 |
| MsG0580025000.01.T01 | AT3G50930 | 42.534 | 442 | 231 | 5 | 34 | 467 | 73 | 499 | 6.11e-117 | 355 |
| MsG0580025000.01.T01 | AT4G05380 | 39.496 | 476 | 263 | 8 | 10 | 479 | 3 | 459 | 6.09e-109 | 331 |
| MsG0580025000.01.T01 | AT1G43910 | 37.447 | 470 | 258 | 9 | 10 | 467 | 2 | 447 | 3.98e-98 | 304 |
| MsG0580025000.01.T01 | AT5G17750 | 38.876 | 427 | 215 | 6 | 15 | 436 | 6 | 391 | 5.05e-97 | 298 |
| MsG0580025000.01.T01 | AT3G28510 | 41.565 | 409 | 201 | 7 | 82 | 468 | 67 | 459 | 4.26e-96 | 300 |
| MsG0580025000.01.T01 | AT3G28610 | 39.013 | 446 | 223 | 11 | 55 | 483 | 52 | 465 | 9.28e-94 | 293 |
| MsG0580025000.01.T01 | AT3G28600 | 37.662 | 462 | 232 | 11 | 33 | 467 | 14 | 446 | 1.35e-93 | 292 |
| MsG0580025000.01.T01 | AT3G28570 | 36.948 | 498 | 257 | 14 | 1 | 483 | 1 | 456 | 8.12e-90 | 282 |
| MsG0580025000.01.T01 | AT4G25835 | 34.694 | 441 | 260 | 8 | 27 | 452 | 9 | 436 | 1.03e-89 | 283 |
| MsG0580025000.01.T01 | AT3G28570 | 37.143 | 490 | 251 | 14 | 9 | 483 | 2 | 449 | 2.98e-89 | 280 |
| MsG0580025000.01.T01 | AT3G28580 | 37.029 | 478 | 244 | 12 | 13 | 463 | 8 | 455 | 4.90e-89 | 281 |
| MsG0580025000.01.T01 | AT3G28540 | 35.532 | 470 | 260 | 8 | 19 | 464 | 4 | 454 | 2.02e-88 | 280 |
| MsG0580025000.01.T01 | AT3G28540 | 35.532 | 470 | 260 | 8 | 19 | 464 | 4 | 454 | 3.09e-88 | 279 |
| MsG0580025000.01.T01 | AT5G40000 | 36.025 | 483 | 244 | 16 | 12 | 468 | 7 | 450 | 1.44e-87 | 276 |
| MsG0580025000.01.T01 | AT5G40010 | 36.632 | 475 | 255 | 9 | 13 | 463 | 8 | 460 | 3.21e-87 | 277 |
| MsG0580025000.01.T01 | AT5G57480 | 33.333 | 465 | 274 | 7 | 27 | 467 | 9 | 461 | 6.84e-85 | 271 |
| MsG0580025000.01.T01 | AT3G28600 | 45.570 | 316 | 148 | 7 | 165 | 467 | 103 | 407 | 9.86e-82 | 260 |
| MsG0580025000.01.T01 | AT3G28520 | 44.073 | 329 | 163 | 5 | 155 | 466 | 117 | 441 | 1.14e-81 | 261 |
| MsG0580025000.01.T01 | AT4G30250 | 33.758 | 471 | 278 | 8 | 20 | 468 | 2 | 460 | 6.42e-81 | 261 |
| MsG0580025000.01.T01 | AT4G30250 | 33.758 | 471 | 278 | 8 | 20 | 468 | 4 | 462 | 9.81e-81 | 260 |
| MsG0580025000.01.T01 | AT3G28580 | 35.106 | 470 | 242 | 11 | 13 | 463 | 8 | 433 | 7.75e-77 | 249 |
| MsG0580025000.01.T01 | AT5G17760 | 40.881 | 318 | 183 | 2 | 15 | 328 | 6 | 322 | 7.24e-75 | 239 |
| MsG0580025000.01.T01 | AT2G46620 | 32.468 | 462 | 233 | 14 | 25 | 467 | 15 | 416 | 1.56e-68 | 227 |
| MsG0580025000.01.T01 | AT3G29800 | 37.784 | 352 | 163 | 10 | 123 | 465 | 74 | 378 | 4.32e-60 | 204 |
| MsG0580025000.01.T01 | AT4G05340 | 55.844 | 77 | 32 | 1 | 344 | 420 | 19 | 93 | 6.88e-21 | 87.8 |
| MsG0580025000.01.T01 | AT5G43010 | 31.902 | 163 | 88 | 6 | 249 | 404 | 163 | 309 | 9.90e-12 | 67.0 |
| MsG0580025000.01.T01 | AT1G45000 | 31.902 | 163 | 88 | 6 | 249 | 404 | 163 | 309 | 1.38e-11 | 66.6 |
Find 80 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTCAAATTGATCAGTTT+TGG | 0.150920 | 5:+12710305 | MsG0580025000.01.T01:CDS |
| CTGGGTCTACTTTGTCCTTA+TGG | 0.184391 | 5:-12712811 | None:intergenic |
| TCAAAAGACTATGAAGAAAA+TGG | 0.215368 | 5:+12710577 | MsG0580025000.01.T01:CDS |
| TGAAGTGAAACTTGGTTATT+TGG | 0.217186 | 5:-12710289 | None:intergenic |
| TTGATGATATCAAGCTTAAA+TGG | 0.279360 | 5:+12710479 | MsG0580025000.01.T01:CDS |
| CCAGACAAAGTAAACTTTCT+AGG | 0.283489 | 5:-12712719 | None:intergenic |
| GTCTGGTCTGCTTAACTATA+TGG | 0.299508 | 5:+12712736 | MsG0580025000.01.T01:CDS |
| ACCAGACAAGTTTCCAGATA+TGG | 0.299840 | 5:+12711086 | MsG0580025000.01.T01:CDS |
| TGAACAAATTGAAGAGCTAT+TGG | 0.308188 | 5:+12712952 | MsG0580025000.01.T01:CDS |
| AAACGTGGTTACTTATTATA+TGG | 0.310407 | 5:+12710871 | MsG0580025000.01.T01:CDS |
| AAGAACTATGTTGTTATGTT+TGG | 0.317224 | 5:-12710422 | None:intergenic |
| CCTAGAAAGTTTACTTTGTC+TGG | 0.319922 | 5:+12712719 | MsG0580025000.01.T01:CDS |
| TTTAGTAGGAATATACTCTT+TGG | 0.330038 | 5:-12710359 | None:intergenic |
| TATTCACTTGTCATTTCTTA+AGG | 0.331615 | 5:+12712865 | MsG0580025000.01.T01:CDS |
| GAAATTTGATGTGTATGATT+TGG | 0.345687 | 5:+12710945 | MsG0580025000.01.T01:CDS |
| AATCTTAGCTTCTAATTACT+TGG | 0.364231 | 5:+12712901 | MsG0580025000.01.T01:CDS |
| AAGATTCATTCTATGCAATC+TGG | 0.364238 | 5:+12710706 | MsG0580025000.01.T01:CDS |
| AGCTAAGATTCTGAATGCTT+TGG | 0.381245 | 5:-12712888 | None:intergenic |
| CGACCGGGGCGCAACAATGC+TGG | 0.387396 | 5:-12712830 | None:intergenic |
| ATCAAAACCATCATCATTGT+TGG | 0.393123 | 5:-12710518 | None:intergenic |
| TTCATTTGATTCACTTGCTA+TGG | 0.396517 | 5:+12710762 | MsG0580025000.01.T01:CDS |
| TCCATATCTGGAAACTTGTC+TGG | 0.403332 | 5:-12711087 | None:intergenic |
| CTTTGGCTGCATAGTAAAGA+TGG | 0.405145 | 5:-12710342 | None:intergenic |
| TCTAATTACTTGGACATTGA+AGG | 0.412074 | 5:+12712911 | MsG0580025000.01.T01:CDS |
| TTATATGGTCCACCAGGAAC+TGG | 0.430679 | 5:+12710886 | MsG0580025000.01.T01:CDS |
| TTTAAGGGATTTGTAAGTGT+TGG | 0.439054 | 5:-12710386 | None:intergenic |
| ACTTACAAATCCCTTAAAGT+TGG | 0.449216 | 5:+12710391 | MsG0580025000.01.T01:CDS |
| GTTAAATCACTTTGTTTCCA+TGG | 0.449328 | 5:-12710730 | None:intergenic |
| ATCTAGTCTTATTGCTGCTA+TGG | 0.454061 | 5:+12710912 | MsG0580025000.01.T01:CDS |
| CAAAAGACTATGAAGAAAAT+GGG | 0.454921 | 5:+12710578 | MsG0580025000.01.T01:CDS |
| GAAGATCCTGATGTTGCTCT+TGG | 0.466250 | 5:+12713025 | MsG0580025000.01.T01:CDS |
| AAGAGAAACGACCAGCCATT+GGG | 0.469890 | 5:-12710105 | None:intergenic |
| TCTTCTTCATTCACAAACAT+TGG | 0.471142 | 5:+12710124 | MsG0580025000.01.T01:CDS |
| GACCGGGGCGCAACAATGCT+GGG | 0.473619 | 5:-12712829 | None:intergenic |
| CAAGCTTAGATCCTACTTAG+TGG | 0.476346 | 5:+12713118 | MsG0580025000.01.T01:exon |
| GAAAATTCCAACAATGATGA+TGG | 0.483127 | 5:+12710511 | MsG0580025000.01.T01:CDS |
| GATCAATTTGAAGTGAAACT+TGG | 0.486219 | 5:-12710297 | None:intergenic |
| AGATACTCTGCCACTACAGC+AGG | 0.486605 | 5:-12712992 | None:intergenic |
| GATATTTACGACGAACCATA+AGG | 0.488719 | 5:+12712796 | MsG0580025000.01.T01:CDS |
| GTGAAACTTGGTTATTTGGT+TGG | 0.495911 | 5:-12710285 | None:intergenic |
| ATTGTTGCGCCCCGGTCGTA+TGG | 0.497128 | 5:+12712835 | MsG0580025000.01.T01:CDS |
| TTAACTATATGGATGGTTTG+TGG | 0.503709 | 5:+12712747 | MsG0580025000.01.T01:CDS |
| GAAGAGAAACGACCAGCCAT+TGG | 0.504564 | 5:-12710106 | None:intergenic |
| AATGATATCTGAAATTGTAA+TGG | 0.510074 | 5:-12713321 | None:intergenic |
| TCATGTTTATGTGTGGAGAA+TGG | 0.513190 | 5:-12710078 | None:intergenic |
| ACTTATGAAGCTATAAAAGC+AGG | 0.514777 | 5:+12710670 | MsG0580025000.01.T01:CDS |
| AATATGCATGTCCATACGAC+CGG | 0.522038 | 5:-12712846 | None:intergenic |
| ACATTGGTTCAGCATCATCA+TGG | 0.528828 | 5:+12710140 | MsG0580025000.01.T01:CDS |
| GCAAGTGAATCAAATGAAGC+AGG | 0.530314 | 5:-12710757 | None:intergenic |
| AATAAGTAACCACGTTTCCA+AGG | 0.530569 | 5:-12710865 | None:intergenic |
| CTATAATTGATGATTTAGAT+CGG | 0.531151 | 5:+12710803 | MsG0580025000.01.T01:CDS |
| AATTTCAGATATCATTCAGT+AGG | 0.538203 | 5:+12713328 | MsG0580025000.01.T01:three_prime_UTR |
| AGATGTCACCCCTGCTGTAG+TGG | 0.539506 | 5:+12712982 | MsG0580025000.01.T01:CDS |
| GGTCTGCTTAACTATATGGA+TGG | 0.549195 | 5:+12712740 | MsG0580025000.01.T01:CDS |
| AGTTCCCTCTAGTATTGTAA+AGG | 0.554385 | 5:+12713235 | MsG0580025000.01.T01:three_prime_UTR |
| GATGGTTTGTGGTCAAGTTG+TGG | 0.563526 | 5:+12712758 | MsG0580025000.01.T01:CDS |
| AGTGCTCCAAGAGCAACATC+AGG | 0.565349 | 5:-12713031 | None:intergenic |
| TCTATTAGATGTCTCTCTCA+TGG | 0.569550 | 5:-12711007 | None:intergenic |
| TCTTAAAAGCATCATGAATG+TGG | 0.575866 | 5:-12710185 | None:intergenic |
| AGACATTGATTGCAATTCAG+AGG | 0.577579 | 5:+12711047 | MsG0580025000.01.T01:CDS |
| AATTTGTCACACCACTAAGT+AGG | 0.579062 | 5:-12713129 | None:intergenic |
| TCATAAGTGCTTAAAACATG+TGG | 0.581742 | 5:-12710655 | None:intergenic |
| GATGCATAGAGATAAAGTAA+TGG | 0.586205 | 5:+12710621 | MsG0580025000.01.T01:CDS |
| TACTTATTATATGGTCCACC+AGG | 0.593809 | 5:+12710880 | MsG0580025000.01.T01:CDS |
| TGATGGAAAACAAGTAGTGG+AGG | 0.599321 | 5:+12710450 | MsG0580025000.01.T01:CDS |
| GACCCAGCATTGTTGCGCCC+CGG | 0.600286 | 5:+12712827 | MsG0580025000.01.T01:CDS |
| ATATGCATGTCCATACGACC+GGG | 0.601008 | 5:-12712845 | None:intergenic |
| ATGATATCAAGCTTAAATGG+AGG | 0.601584 | 5:+12710482 | MsG0580025000.01.T01:CDS |
| AGTATAAGGAATATAAGCAT+AGG | 0.601948 | 5:+12710554 | MsG0580025000.01.T01:CDS |
| ATTCTATGCAATCTGGACCA+TGG | 0.603360 | 5:+12710713 | MsG0580025000.01.T01:CDS |
| GTTGGTAAGCCTTGGAAACG+TGG | 0.609302 | 5:+12710856 | MsG0580025000.01.T01:CDS |
| GATACTCTGCCACTACAGCA+GGG | 0.619261 | 5:-12712991 | None:intergenic |
| AGAGAAACGACCAGCCATTG+GGG | 0.625399 | 5:-12710104 | None:intergenic |
| CATACCTTTACAATACTAGA+GGG | 0.632099 | 5:-12713239 | None:intergenic |
| GCATACCTTTACAATACTAG+AGG | 0.643016 | 5:-12713240 | None:intergenic |
| ATACTCTGCCACTACAGCAG+GGG | 0.676441 | 5:-12712990 | None:intergenic |
| GAGAAACGACCAGCCATTGG+GGG | 0.698400 | 5:-12710103 | None:intergenic |
| TATGCATGTCCATACGACCG+GGG | 0.711765 | 5:-12712844 | None:intergenic |
| TTTGTGGTCAAGTTGTGGAG+AGG | 0.724193 | 5:+12712763 | MsG0580025000.01.T01:CDS |
| GACAAAGTAAACTTTCTAGG+CGG | 0.728578 | 5:-12712716 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCTATCAAATTATTAT+CGG | + | Chr5:12711528-12711547 | MsG0580025000.01.T01:intron | 10.0% |
| !! | AAAAAGTTGTATAAAAAAGT+TGG | + | Chr5:12710838-12710857 | MsG0580025000.01.T01:CDS | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | + | Chr5:12712214-12712233 | MsG0580025000.01.T01:intron | 15.0% |
| !! | TTCAATGTAATCATATTTAT+TGG | - | Chr5:12711503-12711522 | None:intergenic | 15.0% |
| !!! | ATGAAATTTCTAAGTTTTAA+GGG | - | Chr5:12710232-12710251 | None:intergenic | 15.0% |
| !!! | TAACTGTTAAGAATTTTAAT+TGG | + | Chr5:12711254-12711273 | MsG0580025000.01.T01:intron | 15.0% |
| !!! | AATGATATCTGAAATTGTAA+TGG | - | Chr5:12713324-12713343 | None:intergenic | 20.0% |
| !!! | ATAAACTTAATTTTTGACAG+TGG | - | Chr5:12712036-12712055 | None:intergenic | 20.0% |
| !!! | ATTATAGAGTTTTTTAGATC+AGG | - | Chr5:12710790-12710809 | None:intergenic | 20.0% |
| !!! | CTATAATTGATGATTTAGAT+CGG | + | Chr5:12710803-12710822 | MsG0580025000.01.T01:CDS | 20.0% |
| !!! | GATGAAATTTCTAAGTTTTA+AGG | - | Chr5:12710233-12710252 | None:intergenic | 20.0% |
| ! | AAACGTGGTTACTTATTATA+TGG | + | Chr5:12710871-12710890 | MsG0580025000.01.T01:CDS | 25.0% |
| ! | AAGAACTATGTTGTTATGTT+TGG | - | Chr5:12710425-12710444 | None:intergenic | 25.0% |
| ! | AATCTTAGCTTCTAATTACT+TGG | + | Chr5:12712901-12712920 | MsG0580025000.01.T01:CDS | 25.0% |
| ! | AATTTCAGATATCATTCAGT+AGG | + | Chr5:12713328-12713347 | MsG0580025000.01.T01:three_prime_UTR | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | + | Chr5:12712273-12712292 | MsG0580025000.01.T01:intron | 25.0% |
| ! | AGCAAAATGTAAGTCATTTA+GGG | - | Chr5:12712564-12712583 | None:intergenic | 25.0% |
| ! | AGTATAAGGAATATAAGCAT+AGG | + | Chr5:12710554-12710573 | MsG0580025000.01.T01:CDS | 25.0% |
| ! | CAAAAGACTATGAAGAAAAT+GGG | + | Chr5:12710578-12710597 | MsG0580025000.01.T01:CDS | 25.0% |
| ! | GAAATTTGATGTGTATGATT+TGG | + | Chr5:12710945-12710964 | MsG0580025000.01.T01:CDS | 25.0% |
| ! | TAGCAAAATGTAAGTCATTT+AGG | - | Chr5:12712565-12712584 | None:intergenic | 25.0% |
| ! | TATGTTATTCTACTGATAAG+AGG | - | Chr5:12711845-12711864 | None:intergenic | 25.0% |
| ! | TCAAAAGACTATGAAGAAAA+TGG | + | Chr5:12710577-12710596 | MsG0580025000.01.T01:CDS | 25.0% |
| ! | TTTAGTAGGAATATACTCTT+TGG | - | Chr5:12710362-12710381 | None:intergenic | 25.0% |
| !! | ACTTCAAATTGATCAGTTTT+GGG | + | Chr5:12710306-12710325 | MsG0580025000.01.T01:CDS | 25.0% |
| !! | ATATTCCTTATACTCCTTTT+TGG | - | Chr5:12710548-12710567 | None:intergenic | 25.0% |
| !! | GGATATTTTTCCAACTTTAA+GGG | - | Chr5:12710404-12710423 | None:intergenic | 25.0% |
| !! | GTCAAAACTTTTAACAGTTA+TGG | - | Chr5:12711312-12711331 | None:intergenic | 25.0% |
| !! | TATTCACTTGTCATTTCTTA+AGG | + | Chr5:12712865-12712884 | MsG0580025000.01.T01:CDS | 25.0% |
| !! | TATTCCTTATACTCCTTTTT+GGG | - | Chr5:12710547-12710566 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | + | Chr5:12712170-12712189 | MsG0580025000.01.T01:intron | 25.0% |
| !! | TGGATATTTTTCCAACTTTA+AGG | - | Chr5:12710405-12710424 | None:intergenic | 25.0% |
| !! | TTGATGATATCAAGCTTAAA+TGG | + | Chr5:12710479-12710498 | MsG0580025000.01.T01:CDS | 25.0% |
| !!! | AACTGTTAAAAGTTTTGACT+GGG | + | Chr5:12711313-12711332 | MsG0580025000.01.T01:intron | 25.0% |
| !!! | ACTTGTTTTTCTTGAAATTG+TGG | + | Chr5:12712673-12712692 | MsG0580025000.01.T01:intron | 25.0% |
| !!! | ATATCTGGTTAGTCTAATTT+AGG | - | Chr5:12711435-12711454 | None:intergenic | 25.0% |
| !!! | CAGATATGGATTTTTTAGAT+GGG | + | Chr5:12711100-12711119 | MsG0580025000.01.T01:CDS | 25.0% |
| !!! | CTCTTTTTTTAGTTTGAGTT+TGG | + | Chr5:12711226-12711245 | MsG0580025000.01.T01:intron | 25.0% |
| !!! | TAACTGTTAAAAGTTTTGAC+TGG | + | Chr5:12711312-12711331 | MsG0580025000.01.T01:intron | 25.0% |
| !!! | TAAGTGTTGGATATTTTAGT+AGG | - | Chr5:12710376-12710395 | None:intergenic | 25.0% |
| !!! | TATCTGGTTAGTCTAATTTA+GGG | - | Chr5:12711434-12711453 | None:intergenic | 25.0% |
| AAAACTGATTGTCTAATTGC+TGG | - | Chr5:12711935-12711954 | None:intergenic | 30.0% | |
| AAATGACAATGTGTATTGTG+TGG | + | Chr5:12711664-12711683 | MsG0580025000.01.T01:intron | 30.0% | |
| AAGATTCATTCTATGCAATC+TGG | + | Chr5:12710706-12710725 | MsG0580025000.01.T01:CDS | 30.0% | |
| ACTTACAAATCCCTTAAAGT+TGG | + | Chr5:12710391-12710410 | MsG0580025000.01.T01:CDS | 30.0% | |
| ACTTATGAAGCTATAAAAGC+AGG | + | Chr5:12710670-12710689 | MsG0580025000.01.T01:CDS | 30.0% | |
| ATACTTTCAGCTTAACTTCT+TGG | - | Chr5:12711965-12711984 | None:intergenic | 30.0% | |
| ATATTCAAAGCTGAACCAAA+CGG | - | Chr5:12712099-12712118 | None:intergenic | 30.0% | |
| ATCAAAACCATCATCATTGT+TGG | - | Chr5:12710521-12710540 | None:intergenic | 30.0% | |
| ATGATATCAAGCTTAAATGG+AGG | + | Chr5:12710482-12710501 | MsG0580025000.01.T01:CDS | 30.0% | |
| CATACCTTTACAATACTAGA+GGG | - | Chr5:12713242-12713261 | None:intergenic | 30.0% | |
| CATCCATGAGTATATTTATG+TGG | - | Chr5:12711625-12711644 | None:intergenic | 30.0% | |
| CCATCTAAAAAATCCATATC+TGG | - | Chr5:12711102-12711121 | None:intergenic | 30.0% | |
| CTTAGTGGTTAATAAAGTAC+TGG | - | Chr5:12712073-12712092 | None:intergenic | 30.0% | |
| GAAAATTCCAACAATGATGA+TGG | + | Chr5:12710511-12710530 | MsG0580025000.01.T01:CDS | 30.0% | |
| GATGCATAGAGATAAAGTAA+TGG | + | Chr5:12710621-12710640 | MsG0580025000.01.T01:CDS | 30.0% | |
| TCATAAGTGCTTAAAACATG+TGG | - | Chr5:12710658-12710677 | None:intergenic | 30.0% | |
| TCTAATTACTTGGACATTGA+AGG | + | Chr5:12712911-12712930 | MsG0580025000.01.T01:CDS | 30.0% | |
| TCTTCTTCATTCACAAACAT+TGG | + | Chr5:12710124-12710143 | MsG0580025000.01.T01:CDS | 30.0% | |
| TCTTGAAATTGTGGAATAGA+TGG | + | Chr5:12712682-12712701 | MsG0580025000.01.T01:intron | 30.0% | |
| TGAACAAATTGAAGAGCTAT+TGG | + | Chr5:12712952-12712971 | MsG0580025000.01.T01:CDS | 30.0% | |
| TGAAGTGAAACTTGGTTATT+TGG | - | Chr5:12710292-12710311 | None:intergenic | 30.0% | |
| TTAACTATATGGATGGTTTG+TGG | + | Chr5:12712747-12712766 | MsG0580025000.01.T01:CDS | 30.0% | |
| TTTAAGGGATTTGTAAGTGT+TGG | - | Chr5:12710389-12710408 | None:intergenic | 30.0% | |
| ! | CACTTCAAATTGATCAGTTT+TGG | + | Chr5:12710305-12710324 | MsG0580025000.01.T01:CDS | 30.0% |
| ! | GATCAATTTGAAGTGAAACT+TGG | - | Chr5:12710300-12710319 | None:intergenic | 30.0% |
| ! | GATTCTGATAGAATTGATTC+TGG | + | Chr5:12712138-12712157 | MsG0580025000.01.T01:intron | 30.0% |
| ! | GTTAAATCACTTTGTTTCCA+TGG | - | Chr5:12710733-12710752 | None:intergenic | 30.0% |
| ! | TAATCCCAAAAAGGAGTATA+AGG | + | Chr5:12710540-12710559 | MsG0580025000.01.T01:CDS | 30.0% |
| ! | TGAACCAAACACATTGTTTT+TGG | + | Chr5:12712465-12712484 | MsG0580025000.01.T01:intron | 30.0% |
| ! | TTCATTTGATTCACTTGCTA+TGG | + | Chr5:12710762-12710781 | MsG0580025000.01.T01:CDS | 30.0% |
| ! | TTTTGATGGAAAACAAGTAG+TGG | + | Chr5:12710447-12710466 | MsG0580025000.01.T01:CDS | 30.0% |
| !! | AACATAGTTCTTGCTTTTGA+TGG | + | Chr5:12710433-12710452 | MsG0580025000.01.T01:CDS | 30.0% |
| !! | ATAAAAAAGTTGGTAAGCCT+TGG | + | Chr5:12710848-12710867 | MsG0580025000.01.T01:CDS | 30.0% |
| !! | ATCTGGTTAGTCTAATTTAG+GGG | - | Chr5:12711433-12711452 | None:intergenic | 30.0% |
| !! | ATGATTTAGATCGGTTTTTG+AGG | + | Chr5:12710812-12710831 | MsG0580025000.01.T01:CDS | 30.0% |
| !! | CACTGTAGAGAATTGATTTT+GGG | + | Chr5:12712504-12712523 | MsG0580025000.01.T01:intron | 30.0% |
| !! | TCTTAAAAGCATCATGAATG+TGG | - | Chr5:12710188-12710207 | None:intergenic | 30.0% |
| !!! | CCAGATATGGATTTTTTAGA+TGG | + | Chr5:12711099-12711118 | MsG0580025000.01.T01:CDS | 30.0% |
| !!! | GGATTTTTTAGATGGGATTA+AGG | + | Chr5:12711107-12711126 | MsG0580025000.01.T01:CDS | 30.0% |
| !!! | TAAGAGGATTTGTTTTGTTC+AGG | - | Chr5:12711829-12711848 | None:intergenic | 30.0% |
| !!! | TGATAAGACTAGTCTTTTAC+TGG | - | Chr5:12711874-12711893 | None:intergenic | 30.0% |
| !!! | TGGTTTTGATAATCCCAAAA+AGG | + | Chr5:12710531-12710550 | MsG0580025000.01.T01:CDS | 30.0% |
| !!! | TTTGTTTTGTTCAGGTCTAA+TGG | - | Chr5:12711821-12711840 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | + | Chr5:12712481-12712500 | MsG0580025000.01.T01:intron | 30.0% |
| AAACCTATACACGTTGTTCA+AGG | + | Chr5:12712357-12712376 | MsG0580025000.01.T01:intron | 35.0% | |
| AATAAGTAACCACGTTTCCA+AGG | - | Chr5:12710868-12710887 | None:intergenic | 35.0% | |
| AATTTGTCACACCACTAAGT+AGG | - | Chr5:12713132-12713151 | None:intergenic | 35.0% | |
| AGCTAAGATTCTGAATGCTT+TGG | - | Chr5:12712891-12712910 | None:intergenic | 35.0% | |
| AGTTCCCTCTAGTATTGTAA+AGG | + | Chr5:12713235-12713254 | MsG0580025000.01.T01:three_prime_UTR | 35.0% | |
| CCAGACAAAGTAAACTTTCT+AGG | - | Chr5:12712722-12712741 | None:intergenic | 35.0% | |
| CCTAGAAAGTTTACTTTGTC+TGG | + | Chr5:12712719-12712738 | MsG0580025000.01.T01:CDS | 35.0% | |
| CTAGCCAAAAACAATGTGTT+TGG | - | Chr5:12712472-12712491 | None:intergenic | 35.0% | |
| GACAAAGTAAACTTTCTAGG+CGG | - | Chr5:12712719-12712738 | None:intergenic | 35.0% | |
| GATATTTACGACGAACCATA+AGG | + | Chr5:12712796-12712815 | MsG0580025000.01.T01:CDS | 35.0% | |
| GCATACCTTTACAATACTAG+AGG | - | Chr5:12713243-12713262 | None:intergenic | 35.0% | |
| GTGAAACTTGGTTATTTGGT+TGG | - | Chr5:12710288-12710307 | None:intergenic | 35.0% | |
| TAACCAGATATGAAGTGGTT+AGG | + | Chr5:12711444-12711463 | MsG0580025000.01.T01:intron | 35.0% | |
| TACTTATTATATGGTCCACC+AGG | + | Chr5:12710880-12710899 | MsG0580025000.01.T01:CDS | 35.0% | |
| TAGACTAACCAGATATGAAG+TGG | + | Chr5:12711439-12711458 | MsG0580025000.01.T01:intron | 35.0% | |
| TCATGTTTATGTGTGGAGAA+TGG | - | Chr5:12710081-12710100 | None:intergenic | 35.0% | |
| TCATTGTATCTATGTCGTGT+CGG | + | Chr5:12711553-12711572 | MsG0580025000.01.T01:intron | 35.0% | |
| TCTATTAGATGTCTCTCTCA+TGG | - | Chr5:12711010-12711029 | None:intergenic | 35.0% | |
| ! | AAATGTAAGTCATTTAGGGC+CGG | - | Chr5:12712560-12712579 | None:intergenic | 35.0% |
| ! | ACACATTGTCATTTGCATCT+GGG | - | Chr5:12711658-12711677 | None:intergenic | 35.0% |
| ! | AGACATTGATTGCAATTCAG+AGG | + | Chr5:12711047-12711066 | MsG0580025000.01.T01:CDS | 35.0% |
| ! | GACTTACATTTTGCTAGCTA+AGG | + | Chr5:12712569-12712588 | MsG0580025000.01.T01:intron | 35.0% |
| ! | GCAATGTTTGCTTCTTTTAC+AGG | - | Chr5:12713214-12713233 | None:intergenic | 35.0% |
| ! | TACACATTGTCATTTGCATC+TGG | - | Chr5:12711659-12711678 | None:intergenic | 35.0% |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | + | Chr5:12712388-12712407 | MsG0580025000.01.T01:intron | 35.0% |
| ! | TTTTGTTCAGGTCTAATGGT+AGG | - | Chr5:12711817-12711836 | None:intergenic | 35.0% |
| !! | ATCTAGTCTTATTGCTGCTA+TGG | + | Chr5:12710912-12710931 | MsG0580025000.01.T01:CDS | 35.0% |
| !! | ATTTAGATCGGTTTTTGAGG+AGG | + | Chr5:12710815-12710834 | MsG0580025000.01.T01:CDS | 35.0% |
| !! | GCACTGTAGAGAATTGATTT+TGG | + | Chr5:12712503-12712522 | MsG0580025000.01.T01:intron | 35.0% |
| !!! | AAGACTAGTCTTTTACTGGT+TGG | - | Chr5:12711870-12711889 | None:intergenic | 35.0% |
| !!! | CAAATTGATCAGTTTTGGGA+TGG | + | Chr5:12710310-12710329 | MsG0580025000.01.T01:CDS | 35.0% |
| AATATGCATGTCCATACGAC+CGG | - | Chr5:12712849-12712868 | None:intergenic | 40.0% | |
| ACCAGACAAGTTTCCAGATA+TGG | + | Chr5:12711086-12711105 | MsG0580025000.01.T01:CDS | 40.0% | |
| AGCTAGGATTTGTAGCTTCA+TGG | + | Chr5:12712404-12712423 | MsG0580025000.01.T01:intron | 40.0% | |
| ATACTCATGGATGTGTTGTG+TGG | + | Chr5:12711632-12711651 | MsG0580025000.01.T01:intron | 40.0% | |
| ATTCTATGCAATCTGGACCA+TGG | + | Chr5:12710713-12710732 | MsG0580025000.01.T01:CDS | 40.0% | |
| ATTGTATCTATGTCGTGTCG+GGG | + | Chr5:12711555-12711574 | MsG0580025000.01.T01:intron | 40.0% | |
| CAAGCTTAGATCCTACTTAG+TGG | + | Chr5:12713118-12713137 | MsG0580025000.01.T01:exon | 40.0% | |
| CACTGTTTGAACGAATCCAT+TGG | + | Chr5:12711757-12711776 | MsG0580025000.01.T01:intron | 40.0% | |
| CATTGTATCTATGTCGTGTC+GGG | + | Chr5:12711554-12711573 | MsG0580025000.01.T01:intron | 40.0% | |
| CTTTGGCTGCATAGTAAAGA+TGG | - | Chr5:12710345-12710364 | None:intergenic | 40.0% | |
| GCAAGTGAATCAAATGAAGC+AGG | - | Chr5:12710760-12710779 | None:intergenic | 40.0% | |
| GGGCCACATAAATATACTCA+TGG | + | Chr5:12711619-12711638 | MsG0580025000.01.T01:intron | 40.0% | |
| GGTCTGCTTAACTATATGGA+TGG | + | Chr5:12712740-12712759 | MsG0580025000.01.T01:CDS | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | + | Chr5:12711599-12711618 | MsG0580025000.01.T01:intron | 40.0% | |
| GTCTGGTCTGCTTAACTATA+TGG | + | Chr5:12712736-12712755 | MsG0580025000.01.T01:CDS | 40.0% | |
| GTGGCTCAGATTTAATGTCA+CGG | + | Chr5:12711683-12711702 | MsG0580025000.01.T01:intron | 40.0% | |
| TCCATATCTGGAAACTTGTC+TGG | - | Chr5:12711090-12711109 | None:intergenic | 40.0% | |
| TCTCCTTGAACAACGTGTAT+AGG | - | Chr5:12712363-12712382 | None:intergenic | 40.0% | |
| TGATGGAAAACAAGTAGTGG+AGG | + | Chr5:12710450-12710469 | MsG0580025000.01.T01:CDS | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | + | Chr5:12711598-12711617 | MsG0580025000.01.T01:intron | 40.0% | |
| TTAACCACTAAGTGTCCGTT+TGG | + | Chr5:12712081-12712100 | MsG0580025000.01.T01:intron | 40.0% | |
| ! | AGACTAGATTTTCCAGTTCC+TGG | - | Chr5:12710901-12710920 | None:intergenic | 40.0% |
| ! | CAATGGATTCGTTCAAACAG+TGG | - | Chr5:12711759-12711778 | None:intergenic | 40.0% |
| ! | GCTTCATGGAGAATTGCTTT+TGG | + | Chr5:12712418-12712437 | MsG0580025000.01.T01:intron | 40.0% |
| !! | ACATTGGTTCAGCATCATCA+TGG | + | Chr5:12710140-12710159 | MsG0580025000.01.T01:CDS | 40.0% |
| !! | TCATGGAGAATTGCTTTTGG+AGG | + | Chr5:12712421-12712440 | MsG0580025000.01.T01:intron | 40.0% |
| AAGAGAAACGACCAGCCATT+GGG | - | Chr5:12710108-12710127 | None:intergenic | 45.0% | |
| ACATACACTACCAGACACGA+CGG | - | Chr5:12711723-12711742 | None:intergenic | 45.0% | |
| ACGCCTAACCACTTCATATC+TGG | - | Chr5:12711450-12711469 | None:intergenic | 45.0% | |
| ATATGCATGTCCATACGACC+GGG | - | Chr5:12712848-12712867 | None:intergenic | 45.0% | |
| CATAAACATGAGACCCCCAA+TGG | + | Chr5:12710090-12710109 | MsG0580025000.01.T01:exon | 45.0% | |
| CTGGGTCTACTTTGTCCTTA+TGG | - | Chr5:12712814-12712833 | None:intergenic | 45.0% | |
| GAAGATCCTGATGTTGCTCT+TGG | + | Chr5:12713025-12713044 | MsG0580025000.01.T01:CDS | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | - | Chr5:12711606-12711625 | None:intergenic | 45.0% | |
| TCGTGTCGGGGAAAATACTT+GGG | + | Chr5:12711567-12711586 | MsG0580025000.01.T01:intron | 45.0% | |
| TCTCAGAAGCCAAACCAAAC+CGG | + | Chr5:12712538-12712557 | MsG0580025000.01.T01:intron | 45.0% | |
| TGAACCAAACGGACACTTAG+TGG | - | Chr5:12712088-12712107 | None:intergenic | 45.0% | |
| TTATATGGTCCACCAGGAAC+TGG | + | Chr5:12710886-12710905 | MsG0580025000.01.T01:CDS | 45.0% | |
| TTCAGGTCTAATGGTAGGTG+AGG | - | Chr5:12711812-12711831 | None:intergenic | 45.0% | |
| ! | CTAGATTTTCCAGTTCCTGG+TGG | - | Chr5:12710898-12710917 | None:intergenic | 45.0% |
| ! | GATGGTTTGTGGTCAAGTTG+TGG | + | Chr5:12712758-12712777 | MsG0580025000.01.T01:CDS | 45.0% |
| ! | TAAGTCATTTAGGGCCGGTT+TGG | - | Chr5:12712555-12712574 | None:intergenic | 45.0% |
| ! | TTTGTGGTCAAGTTGTGGAG+AGG | + | Chr5:12712763-12712782 | MsG0580025000.01.T01:CDS | 45.0% |
| !! | AATTGCTGGTTCTAGCAGAG+AGG | - | Chr5:12711921-12711940 | None:intergenic | 45.0% |
| AGAGAAACGACCAGCCATTG+GGG | - | Chr5:12710107-12710126 | None:intergenic | 50.0% | |
| AGATACTCTGCCACTACAGC+AGG | - | Chr5:12712995-12713014 | None:intergenic | 50.0% | |
| AGTGCTCCAAGAGCAACATC+AGG | - | Chr5:12713034-12713053 | None:intergenic | 50.0% | |
| ATACTCTGCCACTACAGCAG+GGG | - | Chr5:12712993-12713012 | None:intergenic | 50.0% | |
| GAAGAGAAACGACCAGCCAT+TGG | - | Chr5:12710109-12710128 | None:intergenic | 50.0% | |
| GATACTCTGCCACTACAGCA+GGG | - | Chr5:12712994-12713013 | None:intergenic | 50.0% | |
| GGGGGTCTCATGTTTATGTG+TGG | - | Chr5:12710088-12710107 | None:intergenic | 50.0% | |
| GTCGTGTCGGGGAAAATACT+TGG | + | Chr5:12711566-12711585 | MsG0580025000.01.T01:intron | 50.0% | |
| TATGCATGTCCATACGACCG+GGG | - | Chr5:12712847-12712866 | None:intergenic | 50.0% | |
| ! | GTTGGTAAGCCTTGGAAACG+TGG | + | Chr5:12710856-12710875 | MsG0580025000.01.T01:CDS | 50.0% |
| !! | CATTTAGGGCCGGTTTGGTT+TGG | - | Chr5:12712550-12712569 | None:intergenic | 50.0% |
| AACATGAGACCCCCAATGGC+TGG | + | Chr5:12710094-12710113 | MsG0580025000.01.T01:exon | 55.0% | |
| AGATGTCACCCCTGCTGTAG+TGG | + | Chr5:12712982-12713001 | MsG0580025000.01.T01:CDS | 55.0% | |
| ATAGTGCTGTCCGTCGTGTC+TGG | + | Chr5:12711710-12711729 | MsG0580025000.01.T01:intron | 55.0% | |
| ATGGTAGGTGAGGCAGCAAG+TGG | - | Chr5:12711802-12711821 | None:intergenic | 55.0% | |
| CCATTGGAATGCGTGCGAAG+AGG | + | Chr5:12711773-12711792 | MsG0580025000.01.T01:intron | 55.0% | |
| CCTCTTCGCACGCATTCCAA+TGG | - | Chr5:12711776-12711795 | None:intergenic | 55.0% | |
| GAAGTGGTTAGGCGTGTCTC+AGG | + | Chr5:12711455-12711474 | MsG0580025000.01.T01:intron | 55.0% | |
| GAGAAACGACCAGCCATTGG+GGG | - | Chr5:12710106-12710125 | None:intergenic | 55.0% | |
| TGGTAGGTGAGGCAGCAAGT+GGG | - | Chr5:12711801-12711820 | None:intergenic | 55.0% | |
| ATTGTTGCGCCCCGGTCGTA+TGG | + | Chr5:12712835-12712854 | MsG0580025000.01.T01:CDS | 60.0% | |
| GACCCAGCATTGTTGCGCCC+CGG | + | Chr5:12712827-12712846 | MsG0580025000.01.T01:CDS | 65.0% | |
| GACCGGGGCGCAACAATGCT+GGG | - | Chr5:12712832-12712851 | None:intergenic | 65.0% | |
| CGACCGGGGCGCAACAATGC+TGG | - | Chr5:12712833-12712852 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 12710076 | 12713402 | 12710076 | ID=MsG0580025000.01;Name=MsG0580025000.01 |
| Chr5 | mRNA | 12710076 | 12713402 | 12710076 | ID=MsG0580025000.01.T01;Parent=MsG0580025000.01;Name=MsG0580025000.01.T01;_AED=0.38;_eAED=0.38;_QI=21|1|1|1|1|1|2|276|485 |
| Chr5 | exon | 12710076 | 12711128 | 12710076 | ID=MsG0580025000.01.T01:exon:26914;Parent=MsG0580025000.01.T01 |
| Chr5 | exon | 12712701 | 12713402 | 12712701 | ID=MsG0580025000.01.T01:exon:26915;Parent=MsG0580025000.01.T01 |
| Chr5 | five_prime_UTR | 12710076 | 12710096 | 12710076 | ID=MsG0580025000.01.T01:five_prime_utr;Parent=MsG0580025000.01.T01 |
| Chr5 | CDS | 12710097 | 12711128 | 12710097 | ID=MsG0580025000.01.T01:cds;Parent=MsG0580025000.01.T01 |
| Chr5 | CDS | 12712701 | 12713126 | 12712701 | ID=MsG0580025000.01.T01:cds;Parent=MsG0580025000.01.T01 |
| Chr5 | three_prime_UTR | 12713127 | 12713402 | 12713127 | ID=MsG0580025000.01.T01:three_prime_utr;Parent=MsG0580025000.01.T01 |
| Gene Sequence |
| Protein sequence |
