AlfalfaGEDB | MsG0780041426.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041426.01

KEGG: -
GO: GO:0004568 GO:0005975 GO:0006032 GO:0016998
PFAM: PF00182

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041426.01.T01	XP_003626077.1	96.751	277	8	1	1	276	1	277	0	556

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041426.01.T01	Q5NB11	70.763	236	69	0	41	276	55	290	3.05E-130	374

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041426.01.T01	G7KUN3	96.751	277	8	1	1	276	1	277	0.0	556

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048347.01	MsG0780041426.01	0.801939	7.107362e-49	3.437460e-46
MsG0080049066.01	MsG0780041426.01	-0.830487	2.857123e-55	3.014287e-52
MsG0180000467.01	MsG0780041426.01	-0.806527	7.878712e-50	4.285995e-47
MsG0180000762.01	MsG0780041426.01	0.806688	7.285724e-50	3.979716e-47
MsG0180001111.01	MsG0780041426.01	-0.810642	1.041406e-50	6.311793e-48
MsG0180002935.01	MsG0780041426.01	0.803028	4.238899e-49	2.107787e-46
MsG0180003375.01	MsG0780041426.01	0.818428	1.970393e-52	1.474599e-49
MsG0180003757.01	MsG0780041426.01	-0.814804	1.278385e-51	8.662982e-49
MsG0180003779.01	MsG0780041426.01	-0.847196	1.347150e-59	2.375933e-56
MsG0180003904.01	MsG0780041426.01	-0.800314	1.527666e-48	7.091169e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041426.01.T01	MTR_7g110780	96.751	277	8	1	1	276	1	277	0.0	556
MsG0780041426.01.T01	MTR_3g118390	54.545	242	109	1	35	276	126	366	4.92e-97	290
MsG0780041426.01.T01	MTR_8g074350	53.719	242	110	1	35	276	80	319	2.52e-94	281
MsG0780041426.01.T01	MTR_8g074330	50.413	242	118	1	35	276	80	319	9.66e-89	266
MsG0780041426.01.T01	MTR_8g074335	50.413	242	105	1	35	276	82	308	3.23e-85	257
MsG0780041426.01.T01	MTR_2g099470	38.397	237	110	6	35	270	81	282	4.35e-52	172
MsG0780041426.01.T01	MTR_7g021640	38.340	253	147	4	33	276	58	310	8.00e-52	172
MsG0780041426.01.T01	MTR_2g034680	38.492	252	145	6	35	276	56	307	5.66e-51	170
MsG0780041426.01.T01	MTR_2g099465	37.238	239	115	6	33	270	50	254	9.58e-49	162
MsG0780041426.01.T01	MTR_1g105535	37.607	234	142	3	33	262	61	294	1.10e-48	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041426.01.T01	AT4G01700	69.173	266	82	0	11	276	14	279	5.46e-145	408
MsG0780041426.01.T01	AT1G02360	66.912	272	78	2	9	276	60	323	4.60e-139	395
MsG0780041426.01.T01	AT1G02360	71.901	242	68	0	35	276	30	271	4.92e-139	392
MsG0780041426.01.T01	AT1G02360	66.912	272	78	2	9	276	54	317	5.53e-139	394
MsG0780041426.01.T01	AT3G12500	57.851	242	101	1	35	276	86	326	3.61e-105	309
MsG0780041426.01.T01	AT3G16920	38.889	252	144	7	35	276	68	319	7.33e-51	170
MsG0780041426.01.T01	AT3G16920	38.889	252	144	7	35	276	92	343	9.64e-51	170
MsG0780041426.01.T01	AT1G05850	37.052	251	149	5	35	276	60	310	3.23e-50	168
MsG0780041426.01.T01	AT1G05850	37.052	251	149	5	35	276	60	310	3.23e-50	168
MsG0780041426.01.T01	AT3G54420	36.820	239	115	5	33	270	70	273	2.43e-49	164

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Find 65 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGGCCTTGCTTTGA+AGG	0.347412	7:+90745553	MsG0780041426.01.T01:CDS
AAATATAGTCAATGGTGGAT+TGG	0.476185	7:+90746488	MsG0780041426.01.T01:CDS
AAATGGTCCATCAGGTGCAG+TGG	0.617726	7:-90745467	None:intergenic
AACTCCTAAAGATGCAGAGG+AGG	0.579707	7:-90745200	None:intergenic
AAGCATAAGCCCCAAGAAAA+TGG	0.365932	7:-90745484	None:intergenic
AAGTTGTTCAATGTGGATAC+TGG	0.403395	7:+90746573	MsG0780041426.01.T01:CDS
AATAAAGCAAAATAATATGG+GGG	0.669386	7:-90745170	None:intergenic
AATCCTAACGCCTTCCCTGC+TGG	0.489708	7:-90746282	None:intergenic
AATTATAACTATGGACCAGC+AGG	0.477533	7:+90746267	MsG0780041426.01.T01:CDS
ACATGAAACTACTGGTGGGT+GGG	0.569584	7:+90745444	MsG0780041426.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAGAGATTGGTATAAT+AGG	-	Chr7:90745244-90745263	None:intergenic	30.0%
AGCTAATGAGTTTCAGTTAA+AGG	+	Chr7:90746121-90746140	MsG0780041426.01.T01:intron	30.0%
ATATTTGGAAGCTTCAATGA+AGG	-	Chr7:90745350-90745369	None:intergenic	30.0%
CTACACAAAAGTTTATGAGA+GGG	-	Chr7:90746246-90746265	None:intergenic	30.0%
GAATTGTTTGATACAATCTC+TGG	-	Chr7:90746324-90746343	None:intergenic	30.0%
GAGAAGAGATTGGTATAATA+GGG	-	Chr7:90745243-90745262	None:intergenic	30.0%
GTAGGAATATTGTGTCATAA+AGG	-	Chr7:90745279-90745298	None:intergenic	30.0%
GTATACCAAGATAGTTGAAT+AGG	-	Chr7:90745601-90745620	None:intergenic	30.0%
TACACAAAAGTTTATGAGAG+GGG	-	Chr7:90746245-90746264	None:intergenic	30.0%
TGATATGCACAATCCAAATT+AGG	-	Chr7:90746600-90746619	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	90745151	90746632	90745151	ID=MsG0780041426.01;Name=MsG0780041426.01
Chr7	mRNA	90745151	90746632	90745151	ID=MsG0780041426.01.T01;Parent=MsG0780041426.01;Name=MsG0780041426.01.T01;_AED=0.29;_eAED=0.30;_QI=0\|0\|0\|1\|1\|1\|2\|0\|276
Chr7	exon	90745151	90745614	90745151	ID=MsG0780041426.01.T01:exon:3825;Parent=MsG0780041426.01.T01
Chr7	exon	90746266	90746632	90746266	ID=MsG0780041426.01.T01:exon:3826;Parent=MsG0780041426.01.T01
Chr7	CDS	90745151	90745614	90745151	ID=MsG0780041426.01.T01:cds;Parent=MsG0780041426.01.T01
Chr7	CDS	90746266	90746632	90746266	ID=MsG0780041426.01.T01:cds;Parent=MsG0780041426.01.T01

Gene Sequence

>MsG0780041426.01.T01

ATGACATTTTCCATTCTCACCCCCATATTATTTTGCTTTATTGCTCTTTCCTCCTCTGCATCTTTAGGAGTTGAATCATTTATTGGGTACCCTATTATACCAATCTCTTCTCTAATAAGTAAAAACCTTTATGACACAATATTCCTACACAAAGATGACACTGCATGTCCTGCCAAAAACTTTTACCCTTACCAATCCTTCATTGAAGCTTCCAAATATTTTCCTCAATTTGGTACTACAGGTTGTTTGACCACAAGAAAGCGTGAGATAGCTGCTTTTCTTGCTCAGATTTCACATGAAACTACTGGTGGGTGGGCCACTGCACCTGATGGACCATTTTCTTGGGGCTTATGCTTCAAAGAAGAAATTAGTCCTCAAAGTAACTACTGTGATTCTACTGACAAAGATTGGCCTTGCTTTGAAGGCAAAAGTTACAAAGGAAGAGGTCCTATTCAACTATCTTGGAATTATAACTATGGACCAGCAGGGAAGGCGTTAGGATTTGATGGGCTGAGAAATCCAGAGATTGTATCAAACAATTCAGTGATTGCTTTCAAAACTGCTCTATGGTTTTGGATGACAGAGAGAAAACCAATAGCTTCTTGTCACAATGTGATGGTTGGAAAATATTTGGCAACAAAAGCTGACATAGAAGCTAATCGCACAGCTGGTTTTGGATTGGTGACAAATATAGTCAATGGTGGATTGGAATGTGGAATTCCTGATGATGCAAGAGTTAATGATCGAATTGGATTTTTTCAAAGATATACTAAGTTGTTCAATGTGGATACTGGACCTAATTTGGATTGTGCATATCAGAAATCTTTTTAA

Protein sequence

>MsG0780041426.01.T01

MTFSILTPILFCFIALSSSASLGVESFIGYPIIPISSLISKNLYDTIFLHKDDTACPAKNFYPYQSFIEASKYFPQFGTTGCLTTRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEISPQSNYCDSTDKDWPCFEGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVSNNSVIAFKTALWFWMTERKPIASCHNVMVGKYLATKADIEANRTAGFGLVTNIVNGGLECGIPDDARVNDRIGFFQRYTKLFNVDTGPNLDCAYQKSF*