AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000306.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000306.01.T01 MTR_1g018590 84.223 431 27 2 1 431 5 394 0.0 734
MsG0180000306.01.T01 MTR_1g018610 79.075 411 50 1 21 431 49 423 0.0 669
MsG0180000306.01.T01 MTR_1g018580 76.642 411 36 2 21 431 14 364 0.0 634
MsG0180000306.01.T01 MTR_3g102760 66.585 407 99 3 26 431 20 390 0.0 557
MsG0180000306.01.T01 MTR_3g102770 65.271 406 105 1 26 431 20 389 0.0 547
MsG0180000306.01.T01 MTR_3g013890 64.128 407 109 2 26 431 20 390 0.0 536
MsG0180000306.01.T01 MTR_3g102730 64.128 407 109 2 26 431 20 390 0.0 535
MsG0180000306.01.T01 MTR_4g073090 39.558 407 200 7 32 431 5 372 8.44e-91 280
MsG0180000306.01.T01 MTR_4g121590 38.916 406 200 8 34 431 7 372 2.20e-87 271
MsG0180000306.01.T01 MTR_4g121570 38.025 405 205 8 34 431 7 372 8.82e-87 269
MsG0180000306.01.T01 MTR_3g463660 34.689 418 217 11 26 431 2 375 4.97e-70 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000306.01.T01 AT4G24220 64.286 406 108 2 26 431 20 388 0.0 532
MsG0180000306.01.T01 AT4G24220 64.286 406 108 2 26 431 19 387 0.0 532
MsG0180000306.01.T01 AT5G58750 33.493 418 212 16 32 431 8 377 4.92e-66 216
MsG0180000306.01.T01 AT5G58750 33.493 418 212 16 32 431 16 385 5.21e-66 216

Find 131 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAGCTGAACAACATATT+TGG 0.126207 1:+4218340 MsG0180000306.01.T01:CDS
TGGCAAAGATTCGCAGTATT+TGG 0.147810 1:-4217779 None:intergenic
GGAGGGTGCCCATGCCCTTC+TGG 0.183480 1:-4218132 None:intergenic
AGCATGAGGGTCTTCCTTTA+AGG 0.227760 1:+4218262 MsG0180000306.01.T01:CDS
CGGTTTGAGATCGATGATTA+TGG 0.235119 1:+4218456 MsG0180000306.01.T01:CDS
TTTGAGCCAGGAAACCTTAA+AGG 0.244750 1:-4218276 None:intergenic
CTCTTGTGTGTAATAGAAAT+TGG 0.263026 1:-4217912 None:intergenic
AATAGCTGAACAACATATTT+GGG 0.263385 1:+4218341 MsG0180000306.01.T01:CDS
GGTCTTCCTTTAAGGTTTCC+TGG 0.265961 1:+4218270 MsG0180000306.01.T01:CDS
CAAAATGTAGCATTGATTAT+AGG 0.272352 1:+4217461 MsG0180000306.01.T01:CDS
ATGAACCATGTCGTTCCTTC+TGG 0.275042 1:-4218153 None:intergenic
GGTGGTCCATGGAAGGTTTA+TGG 0.276380 1:+4217542 MsG0180000306.01.T01:CDS
AACATGGATTCCAGGGATTT+AGG 0.280913 1:+4218661 MsG0180000306.01.T01:CDS
TACGCCCCTTAAGGAAGTTT+TGG 0.283902 1:-4218103 None:intergenic
AATCGACCACACCCTATCTT+TGG 0.298584 1:+4218177 MsG0180000306.01.T01:CDS
CTATAATCAATGCTACATTT+TGG 0.303787 1:-4217460 None:intergenic
TAAGGTGAAAATCCAAAGAT+AGG 0.338018 1:-4218189 None:intergenic
CTAAGAATTCGTTCATTAGT+TGG 0.343826 1:+4218688 MsG0180000306.01.T01:CDS
AAGGCTTCATTCTTTGCATT+AGG 0.350949 1:-4218375 None:intergenic
CTGGACCGTCATAATATTCC+TGG 0.357294 1:+4218054 MsG0180000306.01.T01:CDS
ACAACTTGAAATGTACAGTT+TGG 0.366856 1:-4217093 None:intergenic
GGCAAAGATTCGCAGTATTT+GGG 0.373235 1:-4217778 None:intergenic
AGCTAAGGAACATGGATTCC+AGG 0.382372 1:+4218653 MsG0180000306.01.T01:CDS
AATATGTGTCACATCAGTTA+AGG 0.393193 1:-4217666 None:intergenic
ATCGGAGATAATGAAGGATA+AGG 0.401059 1:+4218506 MsG0180000306.01.T01:CDS
TCAGCGTTCCACGTTGGTTG+TGG 0.408075 1:-4217578 None:intergenic
TGCCATGTGTCCCTTCAAAC+AGG 0.417824 1:+4217797 MsG0180000306.01.T01:CDS
TTTGAGATTGGAGGGTGTGT+TGG 0.419849 1:+4218617 MsG0180000306.01.T01:CDS
AAGTTAACGGTTCAATGTTA+AGG 0.423586 1:+4217735 MsG0180000306.01.T01:CDS
AGTGCTTAGTTCCTGTTTGA+AGG 0.429893 1:-4217808 None:intergenic
TGGAGGCTCTACGCCCCTTA+AGG 0.430355 1:-4218112 None:intergenic
GGACTCCAAAACTTCCTTAA+GGG 0.439334 1:+4218098 MsG0180000306.01.T01:CDS
ATCTCCAACTTCTTCAAGCT+TGG 0.439774 1:-4218574 None:intergenic
GATCGATGATTATGGATTTG+AGG 0.440058 1:+4218464 MsG0180000306.01.T01:CDS
ATCGCCATTGGTGCAGTTGA+AGG 0.452749 1:-4218394 None:intergenic
CACACCAAGCTTGAAGAAGT+TGG 0.454920 1:+4218570 MsG0180000306.01.T01:CDS
TTGAGGAGGGGTCGGAGTTG+AGG 0.458175 1:+4218481 MsG0180000306.01.T01:CDS
AGGACTCCAAAACTTCCTTA+AGG 0.458481 1:+4218097 MsG0180000306.01.T01:CDS
TATTCAAGTGGAAACATTTG+TGG 0.460085 1:+4218418 MsG0180000306.01.T01:CDS
AGTCCTTCTGGAGGTCCTCT+AGG 0.462961 1:-4218080 None:intergenic
CGATCGTTTCGAAGGATCCT+AGG 0.464183 1:-4217832 None:intergenic
TTGAGCCTCTGTGGACATGC+TGG 0.468037 1:-4217705 None:intergenic
GGGGTCGGAGTTGAGGTTAT+CGG 0.468894 1:+4218488 MsG0180000306.01.T01:CDS
AGCTTGAAGAAGTTGGAGAT+TGG 0.472593 1:+4218577 MsG0180000306.01.T01:CDS
TTAAGGTTTCCTGGCTCAAA+AGG 0.474340 1:+4218279 MsG0180000306.01.T01:CDS
TGTGCAGATTACAGAATTCA+AGG 0.476950 1:+4217421 MsG0180000306.01.T01:intron
TACAGCATGATGAACGTCAT+TGG 0.481948 1:+4218210 MsG0180000306.01.T01:CDS
CTTCCTCTTGACGACACACC+AGG 0.485639 1:+4217521 MsG0180000306.01.T01:CDS
TATAGGCGTGACGGGAATTG+TGG 0.488302 1:+4217478 MsG0180000306.01.T01:CDS
TCGGAGATAATGAAGGATAA+GGG 0.490757 1:+4218507 MsG0180000306.01.T01:CDS
GATCTTACCGATCGTTTCGA+AGG 0.490896 1:-4217840 None:intergenic
TCTTAGAATTCCTAAATCCC+TGG 0.490914 1:-4218671 None:intergenic
CCACTTGAATACATCGCCAT+TGG 0.492618 1:-4218406 None:intergenic
ATATGTGTCACATCAGTTAA+GGG 0.499720 1:-4217665 None:intergenic
TCCTGGCTCAAAAGGTGCAT+GGG 0.501130 1:+4218287 MsG0180000306.01.T01:CDS
TTGAAGAAGTTGGAGATTGG+TGG 0.501232 1:+4218580 MsG0180000306.01.T01:CDS
CGCCGCAATTTGCAAGCATG+AGG 0.506185 1:+4218248 MsG0180000306.01.T01:CDS
GCTCAAAACTGTGAAGTTAA+CGG 0.507082 1:+4217722 MsG0180000306.01.T01:CDS
GATTCGCAGTATTTGGGATG+AGG 0.519207 1:-4217772 None:intergenic
ATGACGTTCATCATGCTGTA+AGG 0.522524 1:-4218207 None:intergenic
ATAGGCGTGACGGGAATTGT+GGG 0.523966 1:+4217479 MsG0180000306.01.T01:CDS
GCCACGCCATAAACCTTCCA+TGG 0.524352 1:-4217548 None:intergenic
GTGCTTAGTTCCTGTTTGAA+GGG 0.526554 1:-4217807 None:intergenic
GATATCTTGTTAGAAGAGGT+TGG 0.530052 1:+4217935 MsG0180000306.01.T01:CDS
GGGTGCCCATGCCCTTCTGG+AGG 0.531366 1:-4218129 None:intergenic
CGAAACGATCGGTAAGATCA+AGG 0.531559 1:+4217844 MsG0180000306.01.T01:CDS
TAGAGCCTCCAGAAGGGCAT+GGG 0.532296 1:+4218124 MsG0180000306.01.T01:CDS
CGTGGCACATCCTCCGTGAA+GGG 0.534644 1:-4217878 None:intergenic
ACGACACACCAGGTGGTCCA+TGG 0.534646 1:+4217531 MsG0180000306.01.T01:CDS
TGGAGGTCCTCTAGGATCCC+AGG 0.535327 1:-4218072 None:intergenic
TCTTGTGTGTAATAGAAATT+GGG 0.536136 1:-4217911 None:intergenic
AACCATGTCGTTCCTTCTGG+AGG 0.541815 1:-4218150 None:intergenic
CGTTCCACGTTGGTTGTGGA+CGG 0.541898 1:-4217574 None:intergenic
TTCCTGTTTGAAGGGACACA+TGG 0.546442 1:-4217799 None:intergenic
TAAACCTTCCATGGACCACC+TGG 0.546760 1:-4217539 None:intergenic
GATGATTATGGATTTGAGGA+GGG 0.546835 1:+4218468 MsG0180000306.01.T01:CDS
GAAGCCTTCAACTGCACCAA+TGG 0.549227 1:+4218390 MsG0180000306.01.T01:CDS
CGATGATTATGGATTTGAGG+AGG 0.550813 1:+4218467 MsG0180000306.01.T01:CDS
TTCCTGGCTCAAAAGGTGCA+TGG 0.551639 1:+4218286 MsG0180000306.01.T01:CDS
TTATGGATTTGAGGAGGGGT+CGG 0.555462 1:+4218473 MsG0180000306.01.T01:CDS
GCATTGATTATAGGCGTGAC+GGG 0.559853 1:+4217470 MsG0180000306.01.T01:CDS
GAAGGATAAGGGTGGTGTGT+GGG 0.559921 1:+4218518 MsG0180000306.01.T01:CDS
GCGTGGCACATCCTCCGTGA+AGG 0.561649 1:-4217879 None:intergenic
GTGTGTGGGAAGAGATTGTG+AGG 0.564316 1:+4218532 MsG0180000306.01.T01:CDS
ATGAACAAAGCTAAGGAACA+TGG 0.565654 1:+4218645 MsG0180000306.01.T01:CDS
ATTCGCAGTATTTGGGATGA+GGG 0.570962 1:-4217771 None:intergenic
ACCCTCATGCTTGCAAATTG+CGG 0.571724 1:-4218250 None:intergenic
AAGGTGAAAATCCAAAGATA+GGG 0.571865 1:-4218188 None:intergenic
GCTAAGGAACATGGATTCCA+GGG 0.579431 1:+4218654 MsG0180000306.01.T01:CDS
AGAGGATATCTTGTTAGAAG+AGG 0.580425 1:+4217931 MsG0180000306.01.T01:CDS
TGGCACATCCTCCGTGAAGG+GGG 0.581755 1:-4217876 None:intergenic
TGTGGAAGGTGTTAGCAGAA+CGG 0.582640 1:+4218436 MsG0180000306.01.T01:CDS
CAAGTGGAAACATTTGTGGA+AGG 0.585306 1:+4218422 MsG0180000306.01.T01:CDS
GGGCATGGGCACCCTCCAGA+AGG 0.587328 1:+4218138 MsG0180000306.01.T01:CDS
GAGGTTATCGGAGATAATGA+AGG 0.589224 1:+4218500 MsG0180000306.01.T01:CDS
AGCATTGATTATAGGCGTGA+CGG 0.590164 1:+4217469 MsG0180000306.01.T01:CDS
ACAACATATTTGGGGTGCAG+TGG 0.593718 1:+4218350 MsG0180000306.01.T01:CDS
CAATTTCTATTACACACAAG+AGG 0.594811 1:+4217913 MsG0180000306.01.T01:CDS
CCACCTGGTGTGTCGTCAAG+AGG 0.596172 1:-4217524 None:intergenic
CTAGGATCCTTCGAAACGAT+CGG 0.596222 1:+4217833 MsG0180000306.01.T01:CDS
GTAGAGCCTCCAGAAGGGCA+TGG 0.600143 1:+4218123 MsG0180000306.01.T01:CDS
GACTCCAAAACTTCCTTAAG+GGG 0.601260 1:+4218099 MsG0180000306.01.T01:CDS
GGATTCTATGAACAAAGCTA+AGG 0.603190 1:+4218638 MsG0180000306.01.T01:CDS
CAAGAGGAAGAATCTCTGCT+AGG 0.603639 1:-4217508 None:intergenic
TGGACCGTCATAATATTCCT+GGG 0.604095 1:+4218055 MsG0180000306.01.T01:CDS
TGAAGGATAAGGGTGGTGTG+TGG 0.605479 1:+4218517 MsG0180000306.01.T01:CDS
ATAGCTGAACAACATATTTG+GGG 0.609952 1:+4218342 MsG0180000306.01.T01:CDS
GAAAATCCAAAGATAGGGTG+TGG 0.610721 1:-4218183 None:intergenic
GTGGCACATCCTCCGTGAAG+GGG 0.611842 1:-4217877 None:intergenic
ACCATGTCGTTCCTTCTGGA+GGG 0.613310 1:-4218149 None:intergenic
AGGGGCGTAGAGCCTCCAGA+AGG 0.616268 1:+4218117 MsG0180000306.01.T01:CDS
TATTTGGGATGAGGGCTCGA+AGG 0.617902 1:-4217763 None:intergenic
GCCGCAATTTGCAAGCATGA+GGG 0.625863 1:+4218249 MsG0180000306.01.T01:CDS
ATGATTATGGATTTGAGGAG+GGG 0.626346 1:+4218469 MsG0180000306.01.T01:CDS
CACACCAGGTGGTCCATGGA+AGG 0.631164 1:+4217535 MsG0180000306.01.T01:CDS
AAATTGGGTGTGACAAAGCG+TGG 0.632713 1:-4217896 None:intergenic
CCAATGGCGATGTATTCAAG+TGG 0.636788 1:+4218406 MsG0180000306.01.T01:CDS
TACTTATCAGCGTTCCACGT+TGG 0.638942 1:-4217584 None:intergenic
ACAGGAACTAAGCACTACCT+AGG 0.639304 1:+4217815 MsG0180000306.01.T01:CDS
GATCCTAGAGGACCTCCAGA+AGG 0.643052 1:+4218077 MsG0180000306.01.T01:CDS
TCCATGGAAGGTTTATGGCG+TGG 0.649148 1:+4217547 MsG0180000306.01.T01:CDS
GGATCCCAGGAATATTATGA+CGG 0.659545 1:-4218059 None:intergenic
GAGATAATGAAGGATAAGGG+TGG 0.670237 1:+4218510 MsG0180000306.01.T01:CDS
GGGGCGTAGAGCCTCCAGAA+GGG 0.678335 1:+4218118 MsG0180000306.01.T01:CDS
ATCCGTATGAAAGAAATGAG+TGG 0.680937 1:+4217056 None:intergenic
CTCGCCGTCCACAACCAACG+TGG 0.681033 1:+4217570 MsG0180000306.01.T01:CDS
CCTCTTGACGACACACCAGG+TGG 0.689409 1:+4217524 MsG0180000306.01.T01:CDS
TAATATTCCTGGGATCCTAG+AGG 0.692915 1:+4218065 MsG0180000306.01.T01:CDS
ACCCTCCAGAAGGAACGACA+TGG 0.700672 1:+4218148 MsG0180000306.01.T01:CDS
TGTGTGGGAAGAGATTGTGA+GGG 0.742732 1:+4218533 MsG0180000306.01.T01:CDS
GTGGACCAGCATGTCCACAG+AGG 0.762847 1:+4217700 MsG0180000306.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAATAAAAAATAAA+GGG - Chr1:4217373-4217392 None:intergenic 10.0%
!! TACTTGAAAATAAAAAATAA+AGG - Chr1:4217374-4217393 None:intergenic 10.0%
!! CTTGAAAATAAAAAATAAAG+GGG - Chr1:4217372-4217391 None:intergenic 15.0%
!! TTGAAAATAAAAAATAAAGG+GGG - Chr1:4217371-4217390 None:intergenic 15.0%
!! TATTGAAAAACATAGAACAA+TGG - Chr1:4217344-4217363 None:intergenic 20.0%
!!! TTTAGTTTTGAATTTGAAAC+TGG + Chr1:4218035-4218054 MsG0180000306.01.T01:intron 20.0%
! AAAATAAAAAATAAAGGGGG+AGG - Chr1:4217368-4217387 None:intergenic 25.0%
! AATAGCTGAACAACATATTT+GGG + Chr1:4218341-4218360 MsG0180000306.01.T01:CDS 25.0%
! TAATAGCTGAACAACATATT+TGG + Chr1:4218340-4218359 MsG0180000306.01.T01:CDS 25.0%
! TCTTGTGTGTAATAGAAATT+GGG - Chr1:4217914-4217933 None:intergenic 25.0%
!! CTATAATCAATGCTACATTT+TGG - Chr1:4217463-4217482 None:intergenic 25.0%
!!! CAAAATGTAGCATTGATTAT+AGG + Chr1:4217461-4217480 MsG0180000306.01.T01:CDS 25.0%
AAGGTGAAAATCCAAAGATA+GGG - Chr1:4218191-4218210 None:intergenic 30.0%
AAGTTAACGGTTCAATGTTA+AGG + Chr1:4217735-4217754 MsG0180000306.01.T01:CDS 30.0%
AATAAAAACGAGGATGTCAT+GGG + Chr1:4217161-4217180 MsG0180000306.01.T01:intron 30.0%
AATATGTGTCACATCAGTTA+AGG - Chr1:4217669-4217688 None:intergenic 30.0%
ACAACTTGAAATGTACAGTT+TGG - Chr1:4217096-4217115 None:intergenic 30.0%
ACGAAAAAAAAATGAACTGC+TGG + Chr1:4217278-4217297 MsG0180000306.01.T01:intron 30.0%
ATAGCTGAACAACATATTTG+GGG + Chr1:4218342-4218361 MsG0180000306.01.T01:CDS 30.0%
ATATGTGTCACATCAGTTAA+GGG - Chr1:4217668-4217687 None:intergenic 30.0%
CAATTTCTATTACACACAAG+AGG + Chr1:4217913-4217932 MsG0180000306.01.T01:CDS 30.0%
CTAAGAATTCGTTCATTAGT+TGG + Chr1:4218688-4218707 MsG0180000306.01.T01:CDS 30.0%
CTCTTGTGTGTAATAGAAAT+TGG - Chr1:4217915-4217934 None:intergenic 30.0%
TAAGGTGAAAATCCAAAGAT+AGG - Chr1:4218192-4218211 None:intergenic 30.0%
TAATAAAAACGAGGATGTCA+TGG + Chr1:4217160-4217179 MsG0180000306.01.T01:intron 30.0%
TATTCAAGTGGAAACATTTG+TGG + Chr1:4218418-4218437 MsG0180000306.01.T01:CDS 30.0%
TCACGCATATAATAAAAACG+AGG + Chr1:4217151-4217170 MsG0180000306.01.T01:intron 30.0%
!!! GATTTTAGTTTGAGATTGGA+GGG + Chr1:4218609-4218628 MsG0180000306.01.T01:CDS 30.0%
!!! TGATTTTAGTTTGAGATTGG+AGG + Chr1:4218608-4218627 MsG0180000306.01.T01:CDS 30.0%
!!! TGCTGATTTTAGTTTGAGAT+TGG + Chr1:4218605-4218624 MsG0180000306.01.T01:CDS 30.0%
AAGGCTTCATTCTTTGCATT+AGG - Chr1:4218378-4218397 None:intergenic 35.0%
AGAGGATATCTTGTTAGAAG+AGG + Chr1:4217931-4217950 MsG0180000306.01.T01:CDS 35.0%
ATCGGAGATAATGAAGGATA+AGG + Chr1:4218506-4218525 MsG0180000306.01.T01:CDS 35.0%
ATGAACAAAGCTAAGGAACA+TGG + Chr1:4218645-4218664 MsG0180000306.01.T01:CDS 35.0%
ATGATTATGGATTTGAGGAG+GGG + Chr1:4218469-4218488 MsG0180000306.01.T01:CDS 35.0%
GATATCTTGTTAGAAGAGGT+TGG + Chr1:4217935-4217954 MsG0180000306.01.T01:CDS 35.0%
GATCGATGATTATGGATTTG+AGG + Chr1:4218464-4218483 MsG0180000306.01.T01:CDS 35.0%
GATGATTATGGATTTGAGGA+GGG + Chr1:4218468-4218487 MsG0180000306.01.T01:CDS 35.0%
GCTCAAAACTGTGAAGTTAA+CGG + Chr1:4217722-4217741 MsG0180000306.01.T01:CDS 35.0%
GGATTCTATGAACAAAGCTA+AGG + Chr1:4218638-4218657 MsG0180000306.01.T01:CDS 35.0%
TCGGAGATAATGAAGGATAA+GGG + Chr1:4218507-4218526 MsG0180000306.01.T01:CDS 35.0%
TCTTAGAATTCCTAAATCCC+TGG - Chr1:4218674-4218693 None:intergenic 35.0%
TGTGCAGATTACAGAATTCA+AGG + Chr1:4217421-4217440 MsG0180000306.01.T01:intron 35.0%
TTGAATTCTGTAATCTGCAC+AGG - Chr1:4217422-4217441 None:intergenic 35.0%
! CACATATTTTCTATGTCTCG+TGG + Chr1:4217681-4217700 MsG0180000306.01.T01:CDS 35.0%
AACATGGATTCCAGGGATTT+AGG + Chr1:4218661-4218680 MsG0180000306.01.T01:CDS 40.0%
AGCTTGAAGAAGTTGGAGAT+TGG + Chr1:4218577-4218596 MsG0180000306.01.T01:CDS 40.0%
AGGACTCCAAAACTTCCTTA+AGG + Chr1:4218097-4218116 MsG0180000306.01.T01:CDS 40.0%
AGTGCTTAGTTCCTGTTTGA+AGG - Chr1:4217811-4217830 None:intergenic 40.0%
ATCTCCAACTTCTTCAAGCT+TGG - Chr1:4218577-4218596 None:intergenic 40.0%
ATGACGTTCATCATGCTGTA+AGG - Chr1:4218210-4218229 None:intergenic 40.0%
CAAGTGGAAACATTTGTGGA+AGG + Chr1:4218422-4218441 MsG0180000306.01.T01:CDS 40.0%
CGATGATTATGGATTTGAGG+AGG + Chr1:4218467-4218486 MsG0180000306.01.T01:CDS 40.0%
GAAAATCCAAAGATAGGGTG+TGG - Chr1:4218186-4218205 None:intergenic 40.0%
GACTCCAAAACTTCCTTAAG+GGG + Chr1:4218099-4218118 MsG0180000306.01.T01:CDS 40.0%
GAGATAATGAAGGATAAGGG+TGG + Chr1:4218510-4218529 MsG0180000306.01.T01:CDS 40.0%
GAGGTTATCGGAGATAATGA+AGG + Chr1:4218500-4218519 MsG0180000306.01.T01:CDS 40.0%
GGACTCCAAAACTTCCTTAA+GGG + Chr1:4218098-4218117 MsG0180000306.01.T01:CDS 40.0%
GGATCCCAGGAATATTATGA+CGG - Chr1:4218062-4218081 None:intergenic 40.0%
GGCAAAGATTCGCAGTATTT+GGG - Chr1:4217781-4217800 None:intergenic 40.0%
GTGCTTAGTTCCTGTTTGAA+GGG - Chr1:4217810-4217829 None:intergenic 40.0%
TAATATTCCTGGGATCCTAG+AGG + Chr1:4218065-4218084 MsG0180000306.01.T01:CDS 40.0%
TACAGCATGATGAACGTCAT+TGG + Chr1:4218210-4218229 MsG0180000306.01.T01:CDS 40.0%
TGGACCGTCATAATATTCCT+GGG + Chr1:4218055-4218074 MsG0180000306.01.T01:CDS 40.0%
TGGCAAAGATTCGCAGTATT+TGG - Chr1:4217782-4217801 None:intergenic 40.0%
TTAAGGTTTCCTGGCTCAAA+AGG + Chr1:4218279-4218298 MsG0180000306.01.T01:CDS 40.0%
TTGAAGAAGTTGGAGATTGG+TGG + Chr1:4218580-4218599 MsG0180000306.01.T01:CDS 40.0%
TTTGAGCCAGGAAACCTTAA+AGG - Chr1:4218279-4218298 None:intergenic 40.0%
! ATTCGCAGTATTTGGGATGA+GGG - Chr1:4217774-4217793 None:intergenic 40.0%
! CGGTTTGAGATCGATGATTA+TGG + Chr1:4218456-4218475 MsG0180000306.01.T01:CDS 40.0%
! GCTTCAATTCGACGTCTTTT+TGG - Chr1:4217640-4217659 None:intergenic 40.0%
!! AGCATTGATTATAGGCGTGA+CGG + Chr1:4217469-4217488 MsG0180000306.01.T01:CDS 40.0%
!! GCTACATTTTGGAAGCTTTG+TGG - Chr1:4217452-4217471 None:intergenic 40.0%
AAATTGGGTGTGACAAAGCG+TGG - Chr1:4217899-4217918 None:intergenic 45.0%
AATCGACCACACCCTATCTT+TGG + Chr1:4218177-4218196 MsG0180000306.01.T01:CDS 45.0%
ACAGGAACTAAGCACTACCT+AGG + Chr1:4217815-4217834 MsG0180000306.01.T01:CDS 45.0%
ACCCTCATGCTTGCAAATTG+CGG - Chr1:4218253-4218272 None:intergenic 45.0%
AGCATGAGGGTCTTCCTTTA+AGG + Chr1:4218262-4218281 MsG0180000306.01.T01:CDS 45.0%
AGCTAAGGAACATGGATTCC+AGG + Chr1:4218653-4218672 MsG0180000306.01.T01:CDS 45.0%
ATGAACCATGTCGTTCCTTC+TGG - Chr1:4218156-4218175 None:intergenic 45.0%
CAAGAGGAAGAATCTCTGCT+AGG - Chr1:4217511-4217530 None:intergenic 45.0%
CACACCAAGCTTGAAGAAGT+TGG + Chr1:4218570-4218589 MsG0180000306.01.T01:CDS 45.0%
CCAATGGCGATGTATTCAAG+TGG + Chr1:4218406-4218425 MsG0180000306.01.T01:CDS 45.0%
CCACTTGAATACATCGCCAT+TGG - Chr1:4218409-4218428 None:intergenic 45.0%
CGAAACGATCGGTAAGATCA+AGG + Chr1:4217844-4217863 MsG0180000306.01.T01:CDS 45.0%
CTAGGATCCTTCGAAACGAT+CGG + Chr1:4217833-4217852 MsG0180000306.01.T01:CDS 45.0%
CTGGACCGTCATAATATTCC+TGG + Chr1:4218054-4218073 MsG0180000306.01.T01:CDS 45.0%
GATCTTACCGATCGTTTCGA+AGG - Chr1:4217843-4217862 None:intergenic 45.0%
GCTAAGGAACATGGATTCCA+GGG + Chr1:4218654-4218673 MsG0180000306.01.T01:CDS 45.0%
TACTTATCAGCGTTCCACGT+TGG - Chr1:4217587-4217606 None:intergenic 45.0%
TGTGTGGGAAGAGATTGTGA+GGG + Chr1:4218533-4218552 MsG0180000306.01.T01:CDS 45.0%
TTATGGATTTGAGGAGGGGT+CGG + Chr1:4218473-4218492 MsG0180000306.01.T01:CDS 45.0%
TTCCTGTTTGAAGGGACACA+TGG - Chr1:4217802-4217821 None:intergenic 45.0%
! ACAACATATTTGGGGTGCAG+TGG + Chr1:4218350-4218369 MsG0180000306.01.T01:CDS 45.0%
! GATTCGCAGTATTTGGGATG+AGG - Chr1:4217775-4217794 None:intergenic 45.0%
! TACGCCCCTTAAGGAAGTTT+TGG - Chr1:4218106-4218125 None:intergenic 45.0%
! TGCTGGTTAGCTAAAGCATC+TGG + Chr1:4217295-4217314 MsG0180000306.01.T01:intron 45.0%
! TTAGCTAAAGCATCTGGCAC+TGG + Chr1:4217301-4217320 MsG0180000306.01.T01:intron 45.0%
! TTTGAGATTGGAGGGTGTGT+TGG + Chr1:4218617-4218636 MsG0180000306.01.T01:CDS 45.0%
!! GCATTGATTATAGGCGTGAC+GGG + Chr1:4217470-4217489 MsG0180000306.01.T01:CDS 45.0%
!! GGTCTTCCTTTAAGGTTTCC+TGG + Chr1:4218270-4218289 MsG0180000306.01.T01:CDS 45.0%
!! TGTGGAAGGTGTTAGCAGAA+CGG + Chr1:4218436-4218455 MsG0180000306.01.T01:CDS 45.0%
!!! AAGTTTTGGAGTCCTTCTGG+AGG - Chr1:4218092-4218111 None:intergenic 45.0%
!!! AGGAAGTTTTGGAGTCCTTC+TGG - Chr1:4218095-4218114 None:intergenic 45.0%
!!! TTCACAGTTTTGAGCCTCTG+TGG - Chr1:4217717-4217736 None:intergenic 45.0%
AACCATGTCGTTCCTTCTGG+AGG - Chr1:4218153-4218172 None:intergenic 50.0%
ACCATGTCGTTCCTTCTGGA+GGG - Chr1:4218152-4218171 None:intergenic 50.0%
ACGAGGATGTCATGGGCTTA+TGG + Chr1:4217168-4217187 MsG0180000306.01.T01:intron 50.0%
ATCGCCATTGGTGCAGTTGA+AGG - Chr1:4218397-4218416 None:intergenic 50.0%
CGATCGTTTCGAAGGATCCT+AGG - Chr1:4217835-4217854 None:intergenic 50.0%
GAAGCCTTCAACTGCACCAA+TGG + Chr1:4218390-4218409 MsG0180000306.01.T01:CDS 50.0%
GAAGGATAAGGGTGGTGTGT+GGG + Chr1:4218518-4218537 MsG0180000306.01.T01:CDS 50.0%
GCCGCAATTTGCAAGCATGA+GGG + Chr1:4218249-4218268 MsG0180000306.01.T01:CDS 50.0%
GGTGGTCCATGGAAGGTTTA+TGG + Chr1:4217542-4217561 MsG0180000306.01.T01:CDS 50.0%
GTGTGTGGGAAGAGATTGTG+AGG + Chr1:4218532-4218551 MsG0180000306.01.T01:CDS 50.0%
TAAACCTTCCATGGACCACC+TGG - Chr1:4217542-4217561 None:intergenic 50.0%
TCCATGGAAGGTTTATGGCG+TGG + Chr1:4217547-4217566 MsG0180000306.01.T01:CDS 50.0%
TGAAGGATAAGGGTGGTGTG+TGG + Chr1:4218517-4218536 MsG0180000306.01.T01:CDS 50.0%
TGCCATGTGTCCCTTCAAAC+AGG + Chr1:4217797-4217816 MsG0180000306.01.T01:CDS 50.0%
! ATAGGCGTGACGGGAATTGT+GGG + Chr1:4217479-4217498 MsG0180000306.01.T01:CDS 50.0%
! TATAGGCGTGACGGGAATTG+TGG + Chr1:4217478-4217497 MsG0180000306.01.T01:CDS 50.0%
! TATTTGGGATGAGGGCTCGA+AGG - Chr1:4217766-4217785 None:intergenic 50.0%
! TCCTGGCTCAAAAGGTGCAT+GGG + Chr1:4218287-4218306 MsG0180000306.01.T01:CDS 50.0%
! TTCCTGGCTCAAAAGGTGCA+TGG + Chr1:4218286-4218305 MsG0180000306.01.T01:CDS 50.0%
ACCCTCCAGAAGGAACGACA+TGG + Chr1:4218148-4218167 MsG0180000306.01.T01:CDS 55.0%
CGCCGCAATTTGCAAGCATG+AGG + Chr1:4218248-4218267 MsG0180000306.01.T01:CDS 55.0%
CTTCCTCTTGACGACACACC+AGG + Chr1:4217521-4217540 MsG0180000306.01.T01:CDS 55.0%
GATCCTAGAGGACCTCCAGA+AGG + Chr1:4218077-4218096 MsG0180000306.01.T01:CDS 55.0%
GCCACGCCATAAACCTTCCA+TGG - Chr1:4217551-4217570 None:intergenic 55.0%
GGGGTCGGAGTTGAGGTTAT+CGG + Chr1:4218488-4218507 MsG0180000306.01.T01:CDS 55.0%
TTGAGCCTCTGTGGACATGC+TGG - Chr1:4217708-4217727 None:intergenic 55.0%
! AGTCCTTCTGGAGGTCCTCT+AGG - Chr1:4218083-4218102 None:intergenic 55.0%
! CGTTCCACGTTGGTTGTGGA+CGG - Chr1:4217577-4217596 None:intergenic 55.0%
! TAGAGCCTCCAGAAGGGCAT+GGG + Chr1:4218124-4218143 MsG0180000306.01.T01:CDS 55.0%
! TCAGCGTTCCACGTTGGTTG+TGG - Chr1:4217581-4217600 None:intergenic 55.0%
! TCCCATGCACCTTTTGAGCC+AGG - Chr1:4218291-4218310 None:intergenic 55.0%
ACGACACACCAGGTGGTCCA+TGG + Chr1:4217531-4217550 MsG0180000306.01.T01:CDS 60.0%
CACACCAGGTGGTCCATGGA+AGG + Chr1:4217535-4217554 MsG0180000306.01.T01:CDS 60.0%
CCACCTGGTGTGTCGTCAAG+AGG - Chr1:4217527-4217546 None:intergenic 60.0%
CCTCTTGACGACACACCAGG+TGG + Chr1:4217524-4217543 MsG0180000306.01.T01:CDS 60.0%
CGTGGCACATCCTCCGTGAA+GGG - Chr1:4217881-4217900 None:intergenic 60.0%
CTCCGTGAAGGGGGACTCAT+GGG - Chr1:4217870-4217889 None:intergenic 60.0%
GTAGAGCCTCCAGAAGGGCA+TGG + Chr1:4218123-4218142 MsG0180000306.01.T01:CDS 60.0%
GTGGACCAGCATGTCCACAG+AGG + Chr1:4217700-4217719 MsG0180000306.01.T01:CDS 60.0%
GTGGCACATCCTCCGTGAAG+GGG - Chr1:4217880-4217899 None:intergenic 60.0%
TGGAGGCTCTACGCCCCTTA+AGG - Chr1:4218115-4218134 None:intergenic 60.0%
TGGCACATCCTCCGTGAAGG+GGG - Chr1:4217879-4217898 None:intergenic 60.0%
TTGAGGAGGGGTCGGAGTTG+AGG + Chr1:4218481-4218500 MsG0180000306.01.T01:CDS 60.0%
!! TGGAGGTCCTCTAGGATCCC+AGG - Chr1:4218075-4218094 None:intergenic 60.0%
CCATGAGTCCCCCTTCACGG+AGG + Chr1:4217868-4217887 MsG0180000306.01.T01:CDS 65.0%
CCTCCGTGAAGGGGGACTCA+TGG - Chr1:4217871-4217890 None:intergenic 65.0%
CTCGCCGTCCACAACCAACG+TGG + Chr1:4217570-4217589 MsG0180000306.01.T01:CDS 65.0%
GCGTGGCACATCCTCCGTGA+AGG - Chr1:4217882-4217901 None:intergenic 65.0%
GGCCCATGAGTCCCCCTTCA+CGG + Chr1:4217865-4217884 MsG0180000306.01.T01:CDS 65.0%
GGGGCGTAGAGCCTCCAGAA+GGG + Chr1:4218118-4218137 MsG0180000306.01.T01:CDS 65.0%
! AGGGGCGTAGAGCCTCCAGA+AGG + Chr1:4218117-4218136 MsG0180000306.01.T01:CDS 65.0%
GGGCATGGGCACCCTCCAGA+AGG + Chr1:4218138-4218157 MsG0180000306.01.T01:CDS 70.0%
GGGTGCCCATGCCCTTCTGG+AGG - Chr1:4218132-4218151 None:intergenic 70.0%
!! GGAGGGTGCCCATGCCCTTC+TGG - Chr1:4218135-4218154 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4217062 4218746 4217062 ID=MsG0180000306.01;Name=MsG0180000306.01
Chr1 mRNA 4217062 4218746 4217062 ID=MsG0180000306.01.T01;Parent=MsG0180000306.01;Name=MsG0180000306.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0|0|1|0|0.33|3|0|431
Chr1 exon 4217062 4217121 4217062 ID=MsG0180000306.01.T01:exon:5704;Parent=MsG0180000306.01.T01
Chr1 exon 4217428 4217956 4217428 ID=MsG0180000306.01.T01:exon:5703;Parent=MsG0180000306.01.T01
Chr1 exon 4218040 4218746 4218040 ID=MsG0180000306.01.T01:exon:5702;Parent=MsG0180000306.01.T01
Chr1 CDS 4217062 4217121 4217062 ID=MsG0180000306.01.T01:cds;Parent=MsG0180000306.01.T01
Chr1 CDS 4217428 4217956 4217428 ID=MsG0180000306.01.T01:cds;Parent=MsG0180000306.01.T01
Chr1 CDS 4218040 4218746 4218040 ID=MsG0180000306.01.T01:cds;Parent=MsG0180000306.01.T01
Gene Sequence

>MsG0180000306.01.T01

ATGAAAGAAATGAGTGGCTCAACATTTCAATCCAAACTGTACATTTCAAGTTGTACTAGCATTACAGAATTCAAGGAAGCACCACAAAGCTTCCAAAATGTAGCATTGATTATAGGCGTGACGGGAATTGTGGGAAATAGCCTAGCAGAGATTCTTCCTCTTGACGACACACCAGGTGGTCCATGGAAGGTTTATGGCGTGGCTCGCCGTCCACAACCAACGTGGAACGCTGATAAGTATGTTCACTACATTCAATGCGATGTCTTCGACCAAAAAGACGTCGAATTGAAGCTCGCTCCCTTAACTGATGTGACACATATTTTCTATGTCTCGTGGACCAGCATGTCCACAGAGGCTCAAAACTGTGAAGTTAACGGTTCAATGTTAAGGAACGTCCTTCGAGCCCTCATCCCAAATACTGCGAATCTTTGCCATGTGTCCCTTCAAACAGGAACTAAGCACTACCTAGGATCCTTCGAAACGATCGGTAAGATCAAGGCCCATGAGTCCCCCTTCACGGAGGATGTGCCACGCTTTGTCACACCCAATTTCTATTACACACAAGAGGATATCTTGTTAGAAGAGGTTGTTTTGAATTTGAAACTGGACCGTCATAATATTCCTGGGATCCTAGAGGACCTCCAGAAGGACTCCAAAACTTCCTTAAGGGGCGTAGAGCCTCCAGAAGGGCATGGGCACCCTCCAGAAGGAACGACATGGTTCATTAATCGACCACACCCTATCTTTGGATTTTCACCTTACAGCATGATGAACGTCATTGGCACACTTTGTGTTTACGCCGCAATTTGCAAGCATGAGGGTCTTCCTTTAAGGTTTCCTGGCTCAAAAGGTGCATGGGAGTGTTATTCATCAGCTTCAGATGCTAATTTAATAGCTGAACAACATATTTGGGGTGCAGTGGATCCTAATGCAAAGAATGAAGCCTTCAACTGCACCAATGGCGATGTATTCAAGTGGAAACATTTGTGGAAGGTGTTAGCAGAACGGTTTGAGATCGATGATTATGGATTTGAGGAGGGGTCGGAGTTGAGGTTATCGGAGATAATGAAGGATAAGGGTGGTGTGTGGGAAGAGATTGTGAGGGAGAATGAATTGTTGCACACCAAGCTTGAAGAAGTTGGAGATTGGTGGTTTGCTGATTTTAGTTTGAGATTGGAGGGTGTGTTGGATTCTATGAACAAAGCTAAGGAACATGGATTCCAGGGATTTAGGAATTCTAAGAATTCGTTCATTAGTTGGATTGACAAGACAAAAGCTTACAAGATTGTGCCATGA

Protein sequence

>MsG0180000306.01.T01

MKEMSGSTFQSKLYISSCTSITEFKEAPQSFQNVALIIGVTGIVGNSLAEILPLDDTPGGPWKVYGVARRPQPTWNADKYVHYIQCDVFDQKDVELKLAPLTDVTHIFYVSWTSMSTEAQNCEVNGSMLRNVLRALIPNTANLCHVSLQTGTKHYLGSFETIGKIKAHESPFTEDVPRFVTPNFYYTQEDILLEEVVLNLKLDRHNIPGILEDLQKDSKTSLRGVEPPEGHGHPPEGTTWFINRPHPIFGFSPYSMMNVIGTLCVYAAICKHEGLPLRFPGSKGAWECYSSASDANLIAEQHIWGAVDPNAKNEAFNCTNGDVFKWKHLWKVLAERFEIDDYGFEEGSELRLSEIMKDKGGVWEEIVRENELLHTKLEEVGDWWFADFSLRLEGVLDSMNKAKEHGFQGFRNSKNSFISWIDKTKAYKIVP*