AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016960.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016960.01.T01 MTR_3g099140 98.611 216 2 1 1 215 1 216 3.64e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016960.01.T01 AT4G24930 63.636 198 65 3 21 215 32 225 5.76e-86 254

Find 69 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAACTTGGATTAGAAAA+TGG 0.163370 3:-90019915 MsG0380016960.01.T01:CDS
TAGAGACGTACTTGAGTTTC+TGG 0.171943 3:-90018587 MsG0380016960.01.T01:CDS
TTTATGTTGCTTTAATTCTT+TGG 0.192365 3:-90018390 MsG0380016960.01.T01:three_prime_UTR
TTCAGTGGATAATGCTATTC+AGG 0.221800 3:-90019712 MsG0380016960.01.T01:intron
CTACTCCATGGAATCAAAAC+TGG 0.299136 3:+90018426 None:intergenic
CCTTATTATATACAATTTCA+TGG 0.309257 3:-90018330 MsG0380016960.01.T01:three_prime_UTR
TTGTTTGATAGCAGTTTCTA+AGG 0.314027 3:-90018248 MsG0380016960.01.T01:three_prime_UTR
CCATGAAATTGTATATAATA+AGG 0.323387 3:+90018330 None:intergenic
TACCCTTTCACTACTGCATT+TGG 0.323541 3:-90018511 MsG0380016960.01.T01:CDS
CAAGCAAATTAATGACCAAT+TGG 0.356028 3:-90018461 MsG0380016960.01.T01:CDS
AAGGAAGAATGTAATAATAA+AGG 0.360871 3:+90018349 None:intergenic
TGGTTTATCAGAATTGAGTT+TGG 0.373018 3:+90020076 None:intergenic
TGGATTTGTTGATATGCAAC+CGG 0.395325 3:+90019776 None:intergenic
AAGAGATTAGGTAGGAACTT+TGG 0.399530 3:+90020056 None:intergenic
GGTTTATCAGAATTGAGTTT+GGG 0.404393 3:+90020077 None:intergenic
ATGCTAAACAATGAATTAGT+AGG 0.405645 3:+90018144 None:intergenic
ATGCAACCGGGATTTATTGA+TGG 0.409010 3:+90019789 None:intergenic
TGCAACTTGGATTAGAAAAT+GGG 0.415814 3:-90019914 MsG0380016960.01.T01:intron
TGTGGTTGCCTTTAGGTGTA+TGG 0.418783 3:-90018554 MsG0380016960.01.T01:CDS
AAATCAAAAGATGATGACTT+TGG 0.419319 3:+90019756 None:intergenic
GGAGTGGTACTAAGAGAGGT+TGG 0.433778 3:+90019957 None:intergenic
TGGGAGCATACCAGCCCAAT+TGG 0.448538 3:+90018446 None:intergenic
AAGGTGATGTGGTTGCCTTT+AGG 0.454205 3:-90018561 MsG0380016960.01.T01:CDS
TGTGAGTTTGAGGAAGAGGA+TGG 0.454807 3:+90020111 None:intergenic
TATCTGCAAGCTGAAGTTGA+TGG 0.477075 3:-90018619 MsG0380016960.01.T01:CDS
GGGATTGCATGAGAAGGTAG+TGG 0.481680 3:+90020002 None:intergenic
ATGGCTAGAGAGAAGAGATT+AGG 0.488838 3:+90020044 None:intergenic
TTAGTGTGAGTTTGAGGAAG+AGG 0.497936 3:+90020107 None:intergenic
TACTGCATTTGGAGATTCAA+AGG 0.499524 3:-90018500 MsG0380016960.01.T01:CDS
AAGCAAATTAATGACCAATT+GGG 0.501077 3:-90018460 MsG0380016960.01.T01:CDS
AAGACAATCATCGCACGGTT+AGG 0.501398 3:+90018191 None:intergenic
GTGGTACTAAGAGAGGTTGG+AGG 0.502521 3:+90019960 None:intergenic
ATCAGAATTGAGTTTGGGAA+TGG 0.505610 3:+90020082 None:intergenic
TGCAACCGGGATTTATTGAT+GGG 0.506490 3:+90019790 None:intergenic
AAAAGGAGTGGTACTAAGAG+AGG 0.514586 3:+90019953 None:intergenic
TGGTACTAAGAGAGGTTGGA+GGG 0.515063 3:+90019961 None:intergenic
CTCCAAATGCAGTAGTGAAA+GGG 0.516194 3:+90018509 None:intergenic
CCATCTGGGGTATCTTCCAC+AGG 0.517926 3:+90019557 None:intergenic
AACAGAACAACCGTCACCTA+TGG 0.522581 3:-90020221 MsG0380016960.01.T01:five_prime_UTR
TCTCCAAATGCAGTAGTGAA+AGG 0.529463 3:+90018508 None:intergenic
GTACTAAGAGAGGTTGGAGG+GGG 0.530029 3:+90019963 None:intergenic
AAATGTTGATCCTTTCTGAA+AGG 0.544192 3:+90020245 None:intergenic
GTACTTGAGTTTCTGGTGAA+AGG 0.544251 3:-90018580 MsG0380016960.01.T01:CDS
GGGGTTGAGAATTGAGGGAA+GGG 0.549442 3:+90019982 None:intergenic
GGATTTGTTGATATGCAACC+GGG 0.556553 3:+90019777 None:intergenic
ACTGCATTTGGAGATTCAAA+GGG 0.560035 3:-90018499 MsG0380016960.01.T01:CDS
GGTACTAAGAGAGGTTGGAG+GGG 0.564720 3:+90019962 None:intergenic
AAATTAATGACCAATTGGGC+TGG 0.567072 3:-90018456 MsG0380016960.01.T01:CDS
TAGAAACATTAACTACTCCA+TGG 0.568520 3:+90018414 None:intergenic
CTGTGTTAGAATTACCATCT+GGG 0.569604 3:+90019543 None:intergenic
ACAATAACAGCCTTTCAGAA+AGG 0.572124 3:-90020255 MsG0380016960.01.T01:five_prime_UTR
CCGGGATTTATTGATGGGCA+AGG 0.577544 3:+90019795 None:intergenic
AGGGAAGGGATTGCATGAGA+AGG 0.578003 3:+90019996 None:intergenic
ACATGATGCAGTGAGTGGAT+AGG 0.579106 3:-90020173 MsG0380016960.01.T01:five_prime_UTR
GACGGTTCCTGAAAATTCAG+TGG 0.584622 3:-90019727 MsG0380016960.01.T01:CDS
TGGAGATTCAAAGGGTCAAG+AGG 0.585389 3:-90018491 MsG0380016960.01.T01:CDS
AAATGTGAAGTTTCAGCCTG+TGG 0.591368 3:-90019573 MsG0380016960.01.T01:CDS
ATGGTGTTAGTGTGAGTTTG+AGG 0.592040 3:+90020101 None:intergenic
CCTTGCCCATCAATAAATCC+CGG 0.598400 3:-90019795 MsG0380016960.01.T01:CDS
TACTCCATGGAATCAAAACT+GGG 0.599267 3:+90018427 None:intergenic
GTTTCTGGTGAAAGGTGATG+TGG 0.600928 3:-90018572 MsG0380016960.01.T01:CDS
AACAAACATGATGCAGTGAG+TGG 0.610968 3:-90020178 MsG0380016960.01.T01:five_prime_UTR
AGATGTTAATGTTACAGCAA+TGG 0.619227 3:+90020025 None:intergenic
CTAGAGAGAAGAGATTAGGT+AGG 0.619819 3:+90020048 None:intergenic
GCTTAGCCGCAAAACAACAA+AGG 0.641330 3:+90018307 None:intergenic
TGTGTTAGAATTACCATCTG+GGG 0.653509 3:+90019544 None:intergenic
CCTGTGGAAGATACCCCAGA+TGG 0.675119 3:-90019557 MsG0380016960.01.T01:intron
CGGTTAGGCTAAGTGAAATG+CGG 0.699974 3:+90018206 None:intergenic
GGACTAAGACAATCATCGCA+CGG 0.701376 3:+90018186 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GACGAATTTTATATATTTTA+GGG - Chr3:90019078-90019097 MsG0380016960.01.T01:intron 15.0%
!!! GATTATAAATGATTTTATCT+AGG - Chr3:90019492-90019511 MsG0380016960.01.T01:intron 15.0%
!!! TGACGAATTTTATATATTTT+AGG - Chr3:90019077-90019096 MsG0380016960.01.T01:intron 15.0%
!! AAGGAAGAATGTAATAATAA+AGG + Chr3:90020070-90020089 None:intergenic 20.0%
!! CCATGAAATTGTATATAATA+AGG + Chr3:90020089-90020108 None:intergenic 20.0%
!! CCTTATTATATACAATTTCA+TGG - Chr3:90020086-90020105 MsG0380016960.01.T01:CDS 20.0%
!! TTATGCTAAAATGAATATAC+AGG - Chr3:90019770-90019789 MsG0380016960.01.T01:CDS 20.0%
!!! CTTCAAATCTAAATTTTGTA+GGG + Chr3:90019215-90019234 None:intergenic 20.0%
!!! TACTTTAAGAACTAAATTGA+TGG - Chr3:90019413-90019432 MsG0380016960.01.T01:intron 20.0%
!!! TATCAAACTCATGATTTTTA+TGG + Chr3:90018274-90018293 None:intergenic 20.0%
!!! TTCTATTTTTCATTGCTAAT+TGG + Chr3:90018954-90018973 None:intergenic 20.0%
!!! TTTAGTTGATAATAAAACCA+TGG + Chr3:90018557-90018576 None:intergenic 20.0%
!!! TTTATGTTGCTTTAATTCTT+TGG - Chr3:90020026-90020045 MsG0380016960.01.T01:CDS 20.0%
! AAATCAAAAGATGATGACTT+TGG + Chr3:90018663-90018682 None:intergenic 25.0%
! AAGCAAATTAATGACCAATT+GGG - Chr3:90019956-90019975 MsG0380016960.01.T01:CDS 25.0%
! ATGGATTCTATATAATACCA+TGG - Chr3:90018537-90018556 MsG0380016960.01.T01:CDS 25.0%
! CTACTATCTAATATAAATGC+AGG + Chr3:90019024-90019043 None:intergenic 25.0%
! GGTTGAAATAAAAAATAGCT+CGG + Chr3:90020254-90020273 None:intergenic 25.0%
! TAGAATAAACCATCAATTGA+GGG - Chr3:90019041-90019060 MsG0380016960.01.T01:intron 25.0%
!! ACATGAGATAATAAAAGTAC+AGG + Chr3:90018763-90018782 None:intergenic 25.0%
!! ATTTGAGCTATTTAAAGTTG+TGG - Chr3:90019661-90019680 MsG0380016960.01.T01:intron 25.0%
!! GCTTCAAATCTAAATTTTGT+AGG + Chr3:90019216-90019235 None:intergenic 25.0%
!! GTTTTTGATCAATTTACCAT+TGG - Chr3:90018900-90018919 MsG0380016960.01.T01:intron 25.0%
!! TAAATGATTTTATCTAGGTC+AGG - Chr3:90019497-90019516 MsG0380016960.01.T01:intron 25.0%
!!! AAGTTTTTTGACTGAGAAAA+AGG + Chr3:90018483-90018502 None:intergenic 25.0%
!!! TTTTAGGGACTATTGTTAAA+TGG - Chr3:90019093-90019112 MsG0380016960.01.T01:intron 25.0%
AAAAGCTAGCTCATAAAATG+AGG - Chr3:90019121-90019140 MsG0380016960.01.T01:intron 30.0%
AAAGCTAGCTCATAAAATGA+GGG - Chr3:90019122-90019141 MsG0380016960.01.T01:intron 30.0%
AAATGGGTATGTATGCTTAA+TGG - Chr3:90018518-90018537 MsG0380016960.01.T01:CDS 30.0%
AAATGTTGATCCTTTCTGAA+AGG + Chr3:90018174-90018193 None:intergenic 30.0%
AGATGTTAATGTTACAGCAA+TGG + Chr3:90018394-90018413 None:intergenic 30.0%
CAAGCAAATTAATGACCAAT+TGG - Chr3:90019955-90019974 MsG0380016960.01.T01:CDS 30.0%
CTACTGTTAGGTTATTTGAA+CGG - Chr3:90019617-90019636 MsG0380016960.01.T01:intron 30.0%
GGTTTATCAGAATTGAGTTT+GGG + Chr3:90018342-90018361 None:intergenic 30.0%
GTAGAATAAACCATCAATTG+AGG - Chr3:90019040-90019059 MsG0380016960.01.T01:intron 30.0%
TAGAAACATTAACTACTCCA+TGG + Chr3:90020005-90020024 None:intergenic 30.0%
TGGTTTATCAGAATTGAGTT+TGG + Chr3:90018343-90018362 None:intergenic 30.0%
TTAGATTGTAGTGATGAACA+AGG - Chr3:90019443-90019462 MsG0380016960.01.T01:intron 30.0%
! CTAATTTTTCTGCAAGAGAA+AGG + Chr3:90018600-90018619 None:intergenic 30.0%
! TAGTAGCTTGTAAAACCAAT+GGG + Chr3:90019737-90019756 None:intergenic 30.0%
! TGCAACTTGGATTAGAAAAT+GGG - Chr3:90018502-90018521 MsG0380016960.01.T01:CDS 30.0%
! TTGCAACTTGGATTAGAAAA+TGG - Chr3:90018501-90018520 MsG0380016960.01.T01:CDS 30.0%
! TTGTTTGATAGCAGTTTCTA+AGG - Chr3:90020168-90020187 MsG0380016960.01.T01:five_prime_UTR 30.0%
!!! ATCTTTTGATTTTCCTTGGA+CGG - Chr3:90018671-90018690 MsG0380016960.01.T01:intron 30.0%
!!! CATCATCTTTTGATTTTCCT+TGG - Chr3:90018667-90018686 MsG0380016960.01.T01:intron 30.0%
AAAGTTAGCTCGTAAGATGA+AGG - Chr3:90019266-90019285 MsG0380016960.01.T01:intron 35.0%
AAATTAATGACCAATTGGGC+TGG - Chr3:90019960-90019979 MsG0380016960.01.T01:CDS 35.0%
AAGAGATTAGGTAGGAACTT+TGG + Chr3:90018363-90018382 None:intergenic 35.0%
ACAATAACAGCCTTTCAGAA+AGG - Chr3:90018161-90018180 MsG0380016960.01.T01:three_prime_UTR 35.0%
ACTGCATTTGGAGATTCAAA+GGG - Chr3:90019917-90019936 MsG0380016960.01.T01:CDS 35.0%
ACTGTGTTAGAATTACCATC+TGG + Chr3:90018877-90018896 None:intergenic 35.0%
AGATTCAAGCTCATTTGACA+TGG + Chr3:90019238-90019257 None:intergenic 35.0%
ATCAGAATTGAGTTTGGGAA+TGG + Chr3:90018337-90018356 None:intergenic 35.0%
CAGTCAAAAAACTTGCAACT+TGG - Chr3:90018489-90018508 MsG0380016960.01.T01:CDS 35.0%
CATATAACATTGCACAGCTT+AGG - Chr3:90019299-90019318 MsG0380016960.01.T01:intron 35.0%
CTGTGTTAGAATTACCATCT+GGG + Chr3:90018876-90018895 None:intergenic 35.0%
CTTAGGAACATTGTCAATGT+GGG - Chr3:90019316-90019335 MsG0380016960.01.T01:intron 35.0%
GCAAATAACAACAACACCAA+TGG + Chr3:90018919-90018938 None:intergenic 35.0%
GGTTCAGTAAATTAACCCAT+TGG - Chr3:90019719-90019738 MsG0380016960.01.T01:CDS 35.0%
TACTCCATGGAATCAAAACT+GGG + Chr3:90019992-90020011 None:intergenic 35.0%
TACTGAACCCTACATTGAAT+CGG + Chr3:90019708-90019727 None:intergenic 35.0%
TACTGCATTTGGAGATTCAA+AGG - Chr3:90019916-90019935 MsG0380016960.01.T01:CDS 35.0%
TGTGTTAGAATTACCATCTG+GGG + Chr3:90018875-90018894 None:intergenic 35.0%
TTAACCCTTCCTTATTGTCT+CGG + Chr3:90019524-90019543 None:intergenic 35.0%
TTCAGTGGATAATGCTATTC+AGG - Chr3:90018704-90018723 MsG0380016960.01.T01:intron 35.0%
! CTAGTAGCTTGTAAAACCAA+TGG + Chr3:90019738-90019757 None:intergenic 35.0%
! GCATTATCCACTGAATTTTC+AGG + Chr3:90018699-90018718 None:intergenic 35.0%
! TCTAAATTTTGTAGGGCATG+TGG + Chr3:90019208-90019227 None:intergenic 35.0%
!! TGGATTTGTTGATATGCAAC+CGG + Chr3:90018643-90018662 None:intergenic 35.0%
!! TTTTGACTGAGAAAAAGGAG+TGG + Chr3:90018478-90018497 None:intergenic 35.0%
!!! CATTGGTTTTACAAGCTACT+AGG - Chr3:90019736-90019755 MsG0380016960.01.T01:CDS 35.0%
AAAAGGAGTGGTACTAAGAG+AGG + Chr3:90018466-90018485 None:intergenic 40.0%
AAATGTGAAGTTTCAGCCTG+TGG - Chr3:90018843-90018862 MsG0380016960.01.T01:intron 40.0%
AACAAACATGATGCAGTGAG+TGG - Chr3:90018238-90018257 MsG0380016960.01.T01:three_prime_UTR 40.0%
AATCAGCACTGTCTACTGTT+AGG - Chr3:90019605-90019624 MsG0380016960.01.T01:CDS 40.0%
ACTTTCTGAATCCTCGTGAA+TGG + Chr3:90018738-90018757 None:intergenic 40.0%
AGCAGATGAACTGTCTAGTT+TGG + Chr3:90019576-90019595 None:intergenic 40.0%
AGGTCTTTCCGATTCAATGT+AGG - Chr3:90019697-90019716 MsG0380016960.01.T01:intron 40.0%
AGGTTTCTAAACCATTCACG+AGG - Chr3:90018724-90018743 MsG0380016960.01.T01:intron 40.0%
AGTCTTAGTCCCTCAATTGA+TGG + Chr3:90019053-90019072 None:intergenic 40.0%
ATGCAACCGGGATTTATTGA+TGG + Chr3:90018630-90018649 None:intergenic 40.0%
ATGGCTAGAGAGAAGAGATT+AGG + Chr3:90018375-90018394 None:intergenic 40.0%
ATTGAATCGGAAAGACCTCT+AGG + Chr3:90019695-90019714 None:intergenic 40.0%
CACCTATGGCTGAAAAAGAA+TGG - Chr3:90018209-90018228 MsG0380016960.01.T01:three_prime_UTR 40.0%
CATGTGTTAGGCATAAGCAT+TGG + Chr3:90019171-90019190 None:intergenic 40.0%
CTACTCCATGGAATCAAAAC+TGG + Chr3:90019993-90020012 None:intergenic 40.0%
CTAGAGAGAAGAGATTAGGT+AGG + Chr3:90018371-90018390 None:intergenic 40.0%
CTCCAAATGCAGTAGTGAAA+GGG + Chr3:90019910-90019929 None:intergenic 40.0%
GCTTAGGAACATTGTCAATG+TGG - Chr3:90019315-90019334 MsG0380016960.01.T01:intron 40.0%
GGTCTTTCCGATTCAATGTA+GGG - Chr3:90019698-90019717 MsG0380016960.01.T01:intron 40.0%
GTTAGGTTATTTGAACGGTC+CGG - Chr3:90019622-90019641 MsG0380016960.01.T01:intron 40.0%
TAACCCTTCCTTATTGTCTC+GGG + Chr3:90019523-90019542 None:intergenic 40.0%
TACCCTTTCACTACTGCATT+TGG - Chr3:90019905-90019924 MsG0380016960.01.T01:intron 40.0%
TAGAGACGTACTTGAGTTTC+TGG - Chr3:90019829-90019848 MsG0380016960.01.T01:intron 40.0%
TATCTGCAAGCTGAAGTTGA+TGG - Chr3:90019797-90019816 MsG0380016960.01.T01:CDS 40.0%
TCTCCAAATGCAGTAGTGAA+AGG + Chr3:90019911-90019930 None:intergenic 40.0%
TGCAACCGGGATTTATTGAT+GGG + Chr3:90018629-90018648 None:intergenic 40.0%
TGGCATTGTATACAAGTGCT+TGG + Chr3:90019151-90019170 None:intergenic 40.0%
TTAGTGTGAGTTTGAGGAAG+AGG + Chr3:90018312-90018331 None:intergenic 40.0%
TTTGTAGGGCATGTGGAAAT+TGG + Chr3:90019201-90019220 None:intergenic 40.0%
! ATGGTGTTAGTGTGAGTTTG+AGG + Chr3:90018318-90018337 None:intergenic 40.0%
! TTTTGCTGCCATACACCTAA+AGG + Chr3:90019873-90019892 None:intergenic 40.0%
!! GGATTTGTTGATATGCAACC+GGG + Chr3:90018642-90018661 None:intergenic 40.0%
!! GTACTTGAGTTTCTGGTGAA+AGG - Chr3:90019836-90019855 MsG0380016960.01.T01:intron 40.0%
!!! CTCCATTCTTTTTCAGCCAT+AGG + Chr3:90018214-90018233 None:intergenic 40.0%
!!! TCATGGCCTTTGTTGTTTTG+CGG - Chr3:90020103-90020122 MsG0380016960.01.T01:CDS 40.0%
!!! TCTTTTTCAGCCATAGGTGA+CGG + Chr3:90018208-90018227 None:intergenic 40.0%
AACAGAACAACCGTCACCTA+TGG - Chr3:90018195-90018214 MsG0380016960.01.T01:three_prime_UTR 45.0%
AAGACAATCATCGCACGGTT+AGG + Chr3:90020228-90020247 None:intergenic 45.0%
AAGGTGATGTGGTTGCCTTT+AGG - Chr3:90019855-90019874 MsG0380016960.01.T01:intron 45.0%
AATCAAGACGAAACCGCAAC+CGG + Chr3:90019644-90019663 None:intergenic 45.0%
ACATGATGCAGTGAGTGGAT+AGG - Chr3:90018243-90018262 MsG0380016960.01.T01:three_prime_UTR 45.0%
ATTGGACCTAGGCATGTGTT+AGG + Chr3:90019183-90019202 None:intergenic 45.0%
CCTTGCCCATCAATAAATCC+CGG - Chr3:90018621-90018640 MsG0380016960.01.T01:CDS 45.0%
CGGTTAGGCTAAGTGAAATG+CGG + Chr3:90020213-90020232 None:intergenic 45.0%
CTTATGCCTAACACATGCCT+AGG - Chr3:90019174-90019193 MsG0380016960.01.T01:intron 45.0%
GACGGTTCCTGAAAATTCAG+TGG - Chr3:90018689-90018708 MsG0380016960.01.T01:intron 45.0%
GCTTAGCCGCAAAACAACAA+AGG + Chr3:90020112-90020131 None:intergenic 45.0%
GGACTAAGACAATCATCGCA+CGG + Chr3:90020233-90020252 None:intergenic 45.0%
TGGAGATTCAAAGGGTCAAG+AGG - Chr3:90019925-90019944 MsG0380016960.01.T01:CDS 45.0%
TGGTACTAAGAGAGGTTGGA+GGG + Chr3:90018458-90018477 None:intergenic 45.0%
TGTGAGTTTGAGGAAGAGGA+TGG + Chr3:90018308-90018327 None:intergenic 45.0%
TGTGGTTGCCTTTAGGTGTA+TGG - Chr3:90019862-90019881 MsG0380016960.01.T01:intron 45.0%
TTATTTGAACGGTCCGGTTG+CGG - Chr3:90019628-90019647 MsG0380016960.01.T01:intron 45.0%
!! GAATTTTCAGGAACCGTCCA+AGG + Chr3:90018687-90018706 None:intergenic 45.0%
!! GTTTCTGGTGAAAGGTGATG+TGG - Chr3:90019844-90019863 MsG0380016960.01.T01:intron 45.0%
!!! TGCTCCCAGTTTTGATTCCA+TGG - Chr3:90019985-90020004 MsG0380016960.01.T01:CDS 45.0%
!!! TATAATTTTTATAAGTTTTA+GGG - Chr3:90019367-90019386 MsG0380016960.01.T01:intron 5.0%
!!! TTATAATTTTTATAAGTTTT+AGG - Chr3:90019366-90019385 MsG0380016960.01.T01:intron 5.0%
AGGCCCGAGACAATAAGGAA+GGG - Chr3:90019517-90019536 MsG0380016960.01.T01:intron 50.0%
AGGGAAGGGATTGCATGAGA+AGG + Chr3:90018423-90018442 None:intergenic 50.0%
GGAGTGGTACTAAGAGAGGT+TGG + Chr3:90018462-90018481 None:intergenic 50.0%
GGCATGTGGAAATTGGACCT+AGG + Chr3:90019194-90019213 None:intergenic 50.0%
GGGATTGCATGAGAAGGTAG+TGG + Chr3:90018417-90018436 None:intergenic 50.0%
GGGGTTGAGAATTGAGGGAA+GGG + Chr3:90018437-90018456 None:intergenic 50.0%
GGTACTAAGAGAGGTTGGAG+GGG + Chr3:90018457-90018476 None:intergenic 50.0%
GTACTAAGAGAGGTTGGAGG+GGG + Chr3:90018456-90018475 None:intergenic 50.0%
GTGGTACTAAGAGAGGTTGG+AGG + Chr3:90018459-90018478 None:intergenic 50.0%
GTTGTGGAACCATGACCTAG+AGG - Chr3:90019677-90019696 MsG0380016960.01.T01:intron 50.0%
TCGGAAAGACCTCTAGGTCA+TGG + Chr3:90019689-90019708 None:intergenic 50.0%
TGGAGGGGGTTGAGAATTGA+GGG + Chr3:90018442-90018461 None:intergenic 50.0%
TTGGAGGGGGTTGAGAATTG+AGG + Chr3:90018443-90018462 None:intergenic 50.0%
! CCGGGATTTATTGATGGGCA+AGG + Chr3:90018624-90018643 None:intergenic 50.0%
AGGTCAGGCCCGAGACAATA+AGG - Chr3:90019512-90019531 MsG0380016960.01.T01:intron 55.0%
CAGGCCCGAGACAATAAGGA+AGG - Chr3:90019516-90019535 MsG0380016960.01.T01:intron 55.0%
CCTGTGGAAGATACCCCAGA+TGG - Chr3:90018859-90018878 MsG0380016960.01.T01:intron 55.0%
GGGGGTTGAGAATTGAGGGA+AGG + Chr3:90018438-90018457 None:intergenic 55.0%
! CCATCTGGGGTATCTTCCAC+AGG + Chr3:90018862-90018881 None:intergenic 55.0%
! TGGGAGCATACCAGCCCAAT+TGG + Chr3:90019973-90019992 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90018149 90020289 90018149 ID=MsG0380016960.01;Name=MsG0380016960.01
Chr3 mRNA 90018149 90020289 90018149 ID=MsG0380016960.01.T01;Parent=MsG0380016960.01;Name=MsG0380016960.01.T01;_AED=0.40;_eAED=0.40;_QI=133|1|1|1|1|1|4|277|215
Chr3 exon 90018149 90018646 90018149 ID=MsG0380016960.01.T01:exon:12366;Parent=MsG0380016960.01.T01
Chr3 exon 90019558 90019627 90019558 ID=MsG0380016960.01.T01:exon:12365;Parent=MsG0380016960.01.T01
Chr3 exon 90019713 90019827 90019713 ID=MsG0380016960.01.T01:exon:12364;Parent=MsG0380016960.01.T01
Chr3 exon 90019915 90020289 90019915 ID=MsG0380016960.01.T01:exon:12363;Parent=MsG0380016960.01.T01
Chr3 five_prime_UTR 90020157 90020289 90020157 ID=MsG0380016960.01.T01:five_prime_utr;Parent=MsG0380016960.01.T01
Chr3 CDS 90019915 90020156 90019915 ID=MsG0380016960.01.T01:cds;Parent=MsG0380016960.01.T01
Chr3 CDS 90019713 90019827 90019713 ID=MsG0380016960.01.T01:cds;Parent=MsG0380016960.01.T01
Chr3 CDS 90019558 90019627 90019558 ID=MsG0380016960.01.T01:cds;Parent=MsG0380016960.01.T01
Chr3 CDS 90018426 90018646 90018426 ID=MsG0380016960.01.T01:cds;Parent=MsG0380016960.01.T01
Chr3 three_prime_UTR 90018149 90018425 90018149 ID=MsG0380016960.01.T01:three_prime_utr;Parent=MsG0380016960.01.T01
Gene Sequence

>MsG0380016960.01.T01

ATGAGTTTGATACTTCGTCTTCTCCATCCTCTTCCTCAAACTCACACTAACACCATTCCCAAACTCAATTCTGATAAACCAAAGTTCCTACCTAATCTCTTCTCTCTAGCCATTGCTGTAACATTAACATCTCCACTACCTTCTCATGCAATCCCTTCCCTCAATTCTCAACCCCCTCCAACCTCTCTTAGTACCACTCCTTTTTCTCAGTCAAAAAACTTGCAACTTGGATTAGAAAATGGAAAAATTAGACCTTGCCCATCAATAAATCCCGGTTGCATATCAACAAATCCAAAGTCATCATCTTTTGATTTTCCTTGGACGGTTCCTGAAAATTCAGTGGATAATGCTATTCAGAGACTGCGTGAAGCAATTCTAGAGACTCAGAAAAATGTGAAGTTTCAGCCTGTGGAAGATACCCCAGATGGACAGTATCTGCAAGCTGAAGTTGATGGAAAATTTGATAGAGACGTACTTGAGTTTCTGGTGAAAGGTGATGTGGTTGCCTTTAGGTGTATGGCAGCAAAAGTGACTTATATATACCCTTTCACTACTGCATTTGGAGATTCAAAGGGTCAAGAGGCAAGACTCAAGCAAATTAATGACCAATTGGGCTGGTATGCTCCCAGTTTTGATTCCATGGAGTAG

Protein sequence

>MsG0380016960.01.T01

MSLILRLLHPLPQTHTNTIPKLNSDKPKFLPNLFSLAIAVTLTSPLPSHAIPSLNSQPPPTSLSTTPFSQSKNLQLGLENGKIRPCPSINPGCISTNPKSSSFDFPWTVPENSVDNAIQRLREAILETQKNVKFQPVEDTPDGQYLQAEVDGKFDRDVLEFLVKGDVVAFRCMAAKVTYIYPFTTAFGDSKGQEARLKQINDQLGWYAPSFDSME*