AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022765.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022765.01.T01 MTR_4g094605 99.624 266 1 0 1 266 1 266 0.0 538
MsG0480022765.01.T01 MTR_6g012080 90.226 266 25 1 1 266 1 265 1.90e-177 489
MsG0480022765.01.T01 MTR_6g011870 90.977 266 23 1 1 266 1 265 8.02e-175 482
MsG0480022765.01.T01 MTR_6g011880 90.226 266 25 1 1 266 1 265 5.65e-174 480
MsG0480022765.01.T01 MTR_6g011890 90.226 266 25 1 1 266 1 265 6.51e-174 480
MsG0480022765.01.T01 MTR_6g012110 89.098 266 28 1 1 266 1 265 6.30e-172 475
MsG0480022765.01.T01 MTR_5g097280 82.500 240 38 1 27 266 30 265 3.15e-149 417
MsG0480022765.01.T01 MTR_6g043600 83.621 232 17 2 35 266 19 229 7.49e-137 385
MsG0480022765.01.T01 MTR_2g081090 73.444 241 51 3 27 265 34 263 6.79e-121 346
MsG0480022765.01.T01 MTR_2g081090 73.191 235 61 2 33 265 2 236 1.41e-120 344
MsG0480022765.01.T01 MTR_6g060175 50.847 236 101 6 29 254 44 274 7.19e-66 207
MsG0480022765.01.T01 MTR_1g026550 46.914 243 116 7 23 254 82 322 3.12e-60 194
MsG0480022765.01.T01 MTR_6g060175 49.153 236 95 7 29 254 44 264 2.13e-59 190
MsG0480022765.01.T01 MTR_5g098785 37.500 272 132 11 9 254 10 269 7.75e-38 134
MsG0480022765.01.T01 MTR_5g098780 35.231 281 130 11 6 254 7 267 2.91e-37 133
MsG0480022765.01.T01 MTR_6g033320 43.655 197 90 7 64 254 52 233 1.07e-36 130
MsG0480022765.01.T01 MTR_8g023790 37.607 234 105 10 34 250 47 256 1.58e-36 130
MsG0480022765.01.T01 MTR_3g101670 40.206 194 102 5 65 250 66 253 4.54e-35 127
MsG0480022765.01.T01 MTR_2g042720 36.726 226 107 9 53 261 60 266 3.19e-32 119
MsG0480022765.01.T01 MTR_3g435460 35.714 196 102 5 67 253 63 243 5.52e-30 113
MsG0480022765.01.T01 MTR_4g015570 43.827 162 76 6 94 254 134 281 9.01e-28 108
MsG0480022765.01.T01 MTR_1g026550 42.000 150 81 4 24 169 83 230 2.19e-27 106
MsG0480022765.01.T01 MTR_3g435460 34.392 189 100 5 74 253 9 182 2.58e-26 102
MsG0480022765.01.T01 MTR_3g070340 36.564 227 80 10 65 244 65 274 3.63e-21 90.5
MsG0480022765.01.T01 MTR_5g098770 55.405 74 32 1 182 254 13 86 3.83e-21 85.5
MsG0480022765.01.T01 MTR_2g008610 33.816 207 87 8 67 243 73 259 7.35e-18 81.3
MsG0480022765.01.T01 MTR_2g436960 50.685 73 29 2 181 253 27 92 7.90e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022765.01.T01 AT2G34430 88.060 268 28 3 1 266 1 266 1.17e-170 472
MsG0480022765.01.T01 AT1G29930 87.687 268 30 3 1 266 1 267 1.16e-169 469
MsG0480022765.01.T01 AT1G29920 87.313 268 31 3 1 266 1 267 6.36e-169 468
MsG0480022765.01.T01 AT1G29910 87.313 268 31 3 1 266 1 267 6.36e-169 468
MsG0480022765.01.T01 AT2G34420 87.640 267 30 3 1 266 1 265 1.11e-167 464
MsG0480022765.01.T01 AT2G05070 77.206 272 49 4 1 266 1 265 2.71e-149 418
MsG0480022765.01.T01 AT3G27690 75.368 272 55 3 2 266 32 298 1.83e-148 417
MsG0480022765.01.T01 AT2G05100 76.471 272 51 4 1 266 1 265 2.03e-148 416
MsG0480022765.01.T01 AT3G27690 76.190 273 51 4 1 266 1 266 5.06e-148 415
MsG0480022765.01.T01 AT2G05100 75.000 244 48 4 1 238 1 237 4.48e-126 361
MsG0480022765.01.T01 AT5G54270 70.881 261 60 6 20 265 5 264 1.73e-120 345
MsG0480022765.01.T01 AT1G76570 48.416 221 104 5 44 254 100 320 9.63e-61 195
MsG0480022765.01.T01 AT4G10340 50.000 222 98 6 37 254 53 265 1.47e-60 193
MsG0480022765.01.T01 AT3G54890 45.178 197 87 7 64 254 51 232 2.77e-38 134
MsG0480022765.01.T01 AT1G45474 37.662 231 127 6 29 250 20 242 5.04e-38 134
MsG0480022765.01.T01 AT1G45474 37.662 231 127 6 29 250 20 242 5.04e-38 134
MsG0480022765.01.T01 AT1G61520 38.400 250 117 10 30 254 28 265 2.53e-37 133
MsG0480022765.01.T01 AT1G61520 38.400 250 117 10 30 254 28 265 2.53e-37 133
MsG0480022765.01.T01 AT3G61470 37.768 233 103 10 35 250 38 245 7.03e-37 131
MsG0480022765.01.T01 AT1G61520 39.614 207 90 9 74 255 15 211 1.50e-33 121
MsG0480022765.01.T01 AT1G19150 36.134 238 115 9 41 261 52 269 4.19e-32 119
MsG0480022765.01.T01 AT3G47470 40.838 191 99 7 67 253 64 244 4.13e-31 116
MsG0480022765.01.T01 AT3G08940 35.793 271 112 12 29 254 26 279 2.91e-29 112
MsG0480022765.01.T01 AT5G01530 43.210 162 77 6 94 254 135 282 2.23e-27 107
MsG0480022765.01.T01 AT3G54890 39.175 194 69 7 64 254 51 198 2.32e-25 100
MsG0480022765.01.T01 AT3G54890 41.615 161 74 6 64 219 51 196 3.54e-24 97.1
MsG0480022765.01.T01 AT2G40100 42.208 154 69 7 94 244 136 272 1.79e-22 94.0
MsG0480022765.01.T01 AT1G15820 34.300 207 86 7 67 243 70 256 6.37e-19 84.0
MsG0480022765.01.T01 AT5G28450 55.556 63 26 2 190 250 99 161 1.78e-13 67.4
MsG0480022765.01.T01 AT3G54890 43.820 89 41 3 64 150 51 132 9.74e-12 62.4

Find 125 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTCTTGGCGAATGTCTC+TGG 0.172290 4:-76471614 None:intergenic
CATAATGACCATTCACTTTC+CGG 0.213438 4:-76472140 None:intergenic
TCCTGAAGAGGCTACTTTCT+TGG 0.241206 4:-76471468 None:intergenic
ACCTTGCAGCTCCCAATTCT+TGG 0.262027 4:-76471421 None:intergenic
CTCAGAGCATTCTTGCCATC+TGG 0.267634 4:+76471813 MsG0480022765.01.T01:CDS
GTGGGCTATGTTGGGAGCCT+TGG 0.274776 4:+76471661 MsG0480022765.01.T01:CDS
GACTTCAAGTTCACGGTTCT+TGG 0.287728 4:-76471627 None:intergenic
CTCTGAGCATGGACCAAACT+TGG 0.318566 4:-76471797 None:intergenic
GTTCTCCAAAGGTCCCTTTC+CGG 0.323199 4:-76472053 None:intergenic
AACCCCTTCAAGCCAAGAAT+TGG 0.330885 4:+76471409 MsG0480022765.01.T01:CDS
TTCAACTCTGCGAAAGCCTC+TGG 0.342564 4:-76471959 None:intergenic
CCTAAGTACTTAACACGGTC+TGG 0.354037 4:-76471506 None:intergenic
GCTCCCAATTCTTGGCTTGA+AGG 0.367955 4:-76471413 None:intergenic
CTTGAAGGGGTTAGCTTGAC+TGG 0.368606 4:-76471398 None:intergenic
TGGGCTATGTTGGGAGCCTT+GGG 0.369590 4:+76471662 MsG0480022765.01.T01:CDS
CTACTTGGGTAACCCAAGTT+TGG 0.372382 4:+76471784 MsG0480022765.01.T01:CDS
GTCCACCCTCGCTAAAGATC+TGG 0.379439 4:-76471757 None:intergenic
GGAGGCAGCTTTGACCCATT+GGG 0.385139 4:+76471923 MsG0480022765.01.T01:CDS
GCCCATGCGTTGTTGTTGAC+TGG 0.388666 4:-76472097 None:intergenic
TATGTTCGGATTCTTTGTTC+AGG 0.392718 4:+76472021 MsG0480022765.01.T01:CDS
CTCTCTTCACCAACCTTGGC+TGG 0.392734 4:+76471371 MsG0480022765.01.T01:CDS
CGAGGGTGGACTTGACTACT+TGG 0.394014 4:+76471769 MsG0480022765.01.T01:CDS
CCATAGCAGGTGGGCTATGT+TGG 0.398243 4:+76471652 MsG0480022765.01.T01:CDS
TCTCGCAATGGTGTTAAATT+CGG 0.399582 4:+76471707 MsG0480022765.01.T01:CDS
TATGCCACCAACTTTGTTCC+CGG 0.408282 4:+76472121 MsG0480022765.01.T01:CDS
GTTGAAGGTTACCGTATTGC+TGG 0.411128 4:+76471863 MsG0480022765.01.T01:CDS
AGGAGGCAGCTTTGACCCAT+TGG 0.412272 4:+76471922 MsG0480022765.01.T01:CDS
TTAGCCATGTTCTCTATGTT+CGG 0.413048 4:+76472007 MsG0480022765.01.T01:CDS
CTCCCAATTCTTGGCTTGAA+GGG 0.413150 4:-76471412 None:intergenic
ATAATGACCATTCACTTTCC+GGG 0.417015 4:-76472139 None:intergenic
TTTCGCAGAGTTGAAGGTTA+AGG 0.417491 4:+76471967 MsG0480022765.01.T01:CDS
ACACGGTCTGGGCCGTACCA+TGG 0.426815 4:-76471494 None:intergenic
CAGGCTATTGTGACCGGAAA+GGG 0.431695 4:+76472040 MsG0480022765.01.T01:CDS
CGTATTGCTGGTGGACCTCT+TGG 0.432323 4:+76471875 MsG0480022765.01.T01:CDS
GGCTCTCTCTTCACCAACCT+TGG 0.434383 4:+76471367 MsG0480022765.01.T01:CDS
AATGGGTCAAAGCTGCCTCC+TGG 0.443349 4:-76471920 None:intergenic
TGTGACCGGAAAGGGACCTT+TGG 0.445095 4:+76472048 MsG0480022765.01.T01:CDS
GGCCACTCAAGTTATCTTGA+TGG 0.448718 4:+76471835 MsG0480022765.01.T01:CDS
TCAGAGCATTCTTGCCATCT+GGG 0.457297 4:+76471814 MsG0480022765.01.T01:CDS
CACGGTCTGGGCCGTACCAT+GGG 0.459595 4:-76471493 None:intergenic
TTAAATTCGGTGAGGCTGTA+TGG 0.460132 4:+76471720 MsG0480022765.01.T01:CDS
CATAGCAGGTGGGCTATGTT+GGG 0.463478 4:+76471653 MsG0480022765.01.T01:CDS
AGAGGCTTTCGCAGAGTTGA+AGG 0.464620 4:+76471961 MsG0480022765.01.T01:CDS
CCCATGCGTTGTTGTTGACT+GGG 0.468289 4:-76472096 None:intergenic
ACCCCTTCAAGCCAAGAATT+GGG 0.469174 4:+76471410 MsG0480022765.01.T01:CDS
ATCTTGATGGGAGCCGTTGA+AGG 0.469661 4:+76471848 MsG0480022765.01.T01:CDS
CCAACATAGCCCACCTGCTA+TGG 0.470589 4:-76471652 None:intergenic
ACCAAGAAAGTAGCCTCTTC+AGG 0.472216 4:+76471467 MsG0480022765.01.T01:CDS
CCATTGCGAGACAAAAGCTC+TGG 0.476957 4:-76471695 None:intergenic
GTGTCCCATCCGTAGTCACC+TGG 0.480375 4:-76471572 None:intergenic
GGTCGTCAGCTAGGCCCAAT+GGG 0.483278 4:-76471937 None:intergenic
CGGTGAGGCTGTATGGTTCA+AGG 0.483338 4:+76471727 MsG0480022765.01.T01:CDS
AAGCTGCCTCCTGGGTATAG+TGG 0.484943 4:-76471911 None:intergenic
CTTGACTGGCTTGCCAGCCA+AGG 0.485508 4:-76471384 None:intergenic
AAGTACTTAGGCCCATTCTC+TGG 0.486720 4:+76471518 MsG0480022765.01.T01:CDS
TTTGTTCAGGCTATTGTGAC+CGG 0.488454 4:+76472034 MsG0480022765.01.T01:CDS
AAGCCTCTGGGTCGTCAGCT+AGG 0.492481 4:-76471946 None:intergenic
GGGTCGTCAGCTAGGCCCAA+TGG 0.492858 4:-76471938 None:intergenic
AGCTGCCTCCTGGGTATAGT+GGG 0.505096 4:-76471910 None:intergenic
CCAGACCGTGTTAAGTACTT+AGG 0.508216 4:+76471506 MsG0480022765.01.T01:CDS
ACTGGCTTGCCAGCCAAGGT+TGG 0.509911 4:-76471380 None:intergenic
TGAAGAGGCTACTTTCTTGG+TGG 0.512202 4:-76471465 None:intergenic
ATGGGTCAAAGCTGCCTCCT+GGG 0.512483 4:-76471919 None:intergenic
TCCACCCTCGCTAAAGATCT+GGG 0.513274 4:-76471756 None:intergenic
ACCCAGTCAACAACAACGCA+TGG 0.514482 4:+76472095 MsG0480022765.01.T01:CDS
GGGAACAAAGTTGGTGGCAT+AGG 0.515086 4:-76472119 None:intergenic
TCACTTTCCGGGAACAAAGT+TGG 0.517061 4:-76472128 None:intergenic
ACTCTCCAGTCAAGTAAGAC+GGG 0.525262 4:-76471547 None:intergenic
GGTTCTTGGCGAATGTCTCT+GGG 0.525535 4:-76471613 None:intergenic
TATGGATGACTTCAAGTTCA+CGG 0.526961 4:-76471634 None:intergenic
CTCGCTAAAGATCTGGGATC+CGG 0.527239 4:-76471750 None:intergenic
CTTTCCGGGAACAAAGTTGG+TGG 0.536757 4:-76472125 None:intergenic
TCCCAGATCTTTAGCGAGGG+TGG 0.536796 4:+76471755 MsG0480022765.01.T01:CDS
GTACCATGGGCTTCCTGAAG+AGG 0.546646 4:-76471480 None:intergenic
TGCGTTGTTGTTGACTGGGT+CGG 0.549416 4:-76472092 None:intergenic
GCCACTCAAGTTATCTTGAT+GGG 0.551888 4:+76471836 MsG0480022765.01.T01:CDS
TCAACTCTGCGAAAGCCTCT+GGG 0.551997 4:-76471958 None:intergenic
GGAGAGTTCCCAGGTGACTA+CGG 0.554538 4:+76471563 MsG0480022765.01.T01:CDS
CAAGAGGTCCACCAGCAATA+CGG 0.554867 4:-76471874 None:intergenic
AACAATGGCCGCATCATCCA+TGG 0.557317 4:+76471346 None:intergenic
TACTTGACTGGAGAGTTCCC+AGG 0.557425 4:+76471554 MsG0480022765.01.T01:CDS
CTCTGGGAAAACACATCCCA+AGG 0.558618 4:-76471678 None:intergenic
AACTTGAAGTCATCCATAGC+AGG 0.560347 4:+76471639 MsG0480022765.01.T01:CDS
TGGCAAGAATGCTCTGAGCA+TGG 0.562020 4:-76471808 None:intergenic
AGTTCCCAGGTGACTACGGA+TGG 0.562952 4:+76471567 MsG0480022765.01.T01:CDS
AACTCTCCAGTCAAGTAAGA+CGG 0.563156 4:-76471548 None:intergenic
GACTACGGATGGGACACTGC+TGG 0.567506 4:+76471578 MsG0480022765.01.T01:CDS
TCCCAATTCTTGGCTTGAAG+GGG 0.567590 4:-76471411 None:intergenic
AGCAATACGGTAACCTTCAA+CGG 0.570535 4:-76471861 None:intergenic
GAAGGTTACCGTATTGCTGG+TGG 0.574077 4:+76471866 MsG0480022765.01.T01:CDS
TCTTCAGGAAGCCCATGGTA+CGG 0.575157 4:+76471482 MsG0480022765.01.T01:CDS
CTAAGTACTTAACACGGTCT+GGG 0.575188 4:-76471505 None:intergenic
GATAACTTGAGTGGCCCAGA+TGG 0.578481 4:-76471828 None:intergenic
TCAGGCTATTGTGACCGGAA+AGG 0.579894 4:+76472039 MsG0480022765.01.T01:CDS
TGCTGGTGGACCTCTTGGTG+AGG 0.581508 4:+76471880 MsG0480022765.01.T01:CDS
TCTGAGCATGGACCAAACTT+GGG 0.597282 4:-76471796 None:intergenic
CTCTCCAGTCAAGTAAGACG+GGG 0.600570 4:-76471546 None:intergenic
TTGAAGTCATCCATAGCAGG+TGG 0.604782 4:+76471642 MsG0480022765.01.T01:CDS
GGTGGTAGCAGACTTCCTCA+TGG 0.606241 4:-76471447 None:intergenic
GAATCCGAACATAGAGAACA+TGG 0.607900 4:-76472011 None:intergenic
GAGGCTGTATGGTTCAAGGC+CGG 0.609667 4:+76471731 MsG0480022765.01.T01:CDS
TCCCATCAAGATAACTTGAG+TGG 0.611094 4:-76471837 None:intergenic
CCCAGTCAACAACAACGCAT+GGG 0.613068 4:+76472096 MsG0480022765.01.T01:CDS
CATTGCGAGACAAAAGCTCT+GGG 0.627524 4:-76471694 None:intergenic
GGTTGGTGAAGAGAGAGCCA+TGG 0.635995 4:-76471363 None:intergenic
TGTCCCATCCGTAGTCACCT+GGG 0.637071 4:-76471571 None:intergenic
CGGATCCCAGATCTTTAGCG+AGG 0.637974 4:+76471751 MsG0480022765.01.T01:CDS
GCCAAGAATTGGGAGCTGCA+AGG 0.640361 4:+76471420 MsG0480022765.01.T01:CDS
AGAGAGAGCCATGGATGATG+CGG 0.641541 4:-76471354 None:intergenic
AAGGTTAAGGAACTCAAGAA+CGG 0.645128 4:+76471980 MsG0480022765.01.T01:CDS
TAGCCTCTTCAGGAAGCCCA+TGG 0.650998 4:+76471477 MsG0480022765.01.T01:CDS
GGATCCCAGATCTTTAGCGA+GGG 0.652580 4:+76471752 MsG0480022765.01.T01:CDS
GTTCCCAGGTGACTACGGAT+GGG 0.662262 4:+76471568 MsG0480022765.01.T01:CDS
TGATCAGCAAGGTTCTCCAA+AGG 0.663337 4:-76472064 None:intergenic
TGAAGTCATCCATAGCAGGT+GGG 0.676313 4:+76471643 MsG0480022765.01.T01:CDS
GAGGGTGGACTTGACTACTT+GGG 0.679046 4:+76471770 MsG0480022765.01.T01:CDS
GGGTCAACAACCTCACCAAG+AGG 0.680083 4:-76471890 None:intergenic
GAGCTGCAAGGTTCACCATG+AGG 0.681403 4:+76471432 MsG0480022765.01.T01:CDS
GGGCCTAGCTGACGACCCAG+AGG 0.694133 4:+76471943 MsG0480022765.01.T01:CDS
GTTGTTGACCCACTATACCC+AGG 0.698071 4:+76471902 MsG0480022765.01.T01:CDS
CAATGGTGTTAAATTCGGTG+AGG 0.700535 4:+76471712 MsG0480022765.01.T01:CDS
GGTCGGCAAGATGATCAGCA+AGG 0.704980 4:-76472075 None:intergenic
TCTCCAGTCAAGTAAGACGG+GGG 0.735891 4:-76471545 None:intergenic
ATGGGCCTAAGTACTTAACA+CGG 0.752177 4:-76471511 None:intergenic
GTTGACCCACTATACCCAGG+AGG 0.784900 4:+76471905 MsG0480022765.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGGTTAAGGAACTCAAGAA+CGG + Chr4:76471980-76471999 MsG0480022765.01.T01:CDS 35.0%
TATGTTCGGATTCTTTGTTC+AGG + Chr4:76472021-76472040 MsG0480022765.01.T01:CDS 35.0%
TTAGCCATGTTCTCTATGTT+CGG + Chr4:76472007-76472026 MsG0480022765.01.T01:CDS 35.0%
! TATGGATGACTTCAAGTTCA+CGG - Chr4:76471637-76471656 None:intergenic 35.0%
! TCTCGCAATGGTGTTAAATT+CGG + Chr4:76471707-76471726 MsG0480022765.01.T01:CDS 35.0%
AACTCTCCAGTCAAGTAAGA+CGG - Chr4:76471551-76471570 None:intergenic 40.0%
AACTTGAAGTCATCCATAGC+AGG + Chr4:76471639-76471658 MsG0480022765.01.T01:CDS 40.0%
AGCAATACGGTAACCTTCAA+CGG - Chr4:76471864-76471883 None:intergenic 40.0%
ATGGGCCTAAGTACTTAACA+CGG - Chr4:76471514-76471533 None:intergenic 40.0%
CTAAGTACTTAACACGGTCT+GGG - Chr4:76471508-76471527 None:intergenic 40.0%
GAATCCGAACATAGAGAACA+TGG - Chr4:76472014-76472033 None:intergenic 40.0%
GCCACTCAAGTTATCTTGAT+GGG + Chr4:76471836-76471855 MsG0480022765.01.T01:CDS 40.0%
TCCCATCAAGATAACTTGAG+TGG - Chr4:76471840-76471859 None:intergenic 40.0%
TTTCGCAGAGTTGAAGGTTA+AGG + Chr4:76471967-76471986 MsG0480022765.01.T01:CDS 40.0%
TTTGTTCAGGCTATTGTGAC+CGG + Chr4:76472034-76472053 MsG0480022765.01.T01:CDS 40.0%
! CAATGGTGTTAAATTCGGTG+AGG + Chr4:76471712-76471731 MsG0480022765.01.T01:CDS 40.0%
! TTAAATTCGGTGAGGCTGTA+TGG + Chr4:76471720-76471739 MsG0480022765.01.T01:CDS 40.0%
AACCCCTTCAAGCCAAGAAT+TGG + Chr4:76471409-76471428 MsG0480022765.01.T01:CDS 45.0%
AAGTACTTAGGCCCATTCTC+TGG + Chr4:76471518-76471537 MsG0480022765.01.T01:CDS 45.0%
ACCAAGAAAGTAGCCTCTTC+AGG + Chr4:76471467-76471486 MsG0480022765.01.T01:CDS 45.0%
ACCCCTTCAAGCCAAGAATT+GGG + Chr4:76471410-76471429 MsG0480022765.01.T01:CDS 45.0%
ACTCTCCAGTCAAGTAAGAC+GGG - Chr4:76471550-76471569 None:intergenic 45.0%
CATTGCGAGACAAAAGCTCT+GGG - Chr4:76471697-76471716 None:intergenic 45.0%
CCAGACCGTGTTAAGTACTT+AGG + Chr4:76471506-76471525 MsG0480022765.01.T01:CDS 45.0%
CCTAAGTACTTAACACGGTC+TGG - Chr4:76471509-76471528 None:intergenic 45.0%
CTACTTGGGTAACCCAAGTT+TGG + Chr4:76471784-76471803 MsG0480022765.01.T01:CDS 45.0%
GGCCACTCAAGTTATCTTGA+TGG + Chr4:76471835-76471854 MsG0480022765.01.T01:CDS 45.0%
GTTGAAGGTTACCGTATTGC+TGG + Chr4:76471863-76471882 MsG0480022765.01.T01:CDS 45.0%
TATGCCACCAACTTTGTTCC+CGG + Chr4:76472121-76472140 MsG0480022765.01.T01:CDS 45.0%
TCACTTTCCGGGAACAAAGT+TGG - Chr4:76472131-76472150 None:intergenic 45.0%
TCTGAGCATGGACCAAACTT+GGG - Chr4:76471799-76471818 None:intergenic 45.0%
TGAAGTCATCCATAGCAGGT+GGG + Chr4:76471643-76471662 MsG0480022765.01.T01:CDS 45.0%
TGATCAGCAAGGTTCTCCAA+AGG - Chr4:76472067-76472086 None:intergenic 45.0%
TTGAAGTCATCCATAGCAGG+TGG + Chr4:76471642-76471661 MsG0480022765.01.T01:CDS 45.0%
! CTCCCAATTCTTGGCTTGAA+GGG - Chr4:76471415-76471434 None:intergenic 45.0%
! GACTTCAAGTTCACGGTTCT+TGG - Chr4:76471630-76471649 None:intergenic 45.0%
! TCAGAGCATTCTTGCCATCT+GGG + Chr4:76471814-76471833 MsG0480022765.01.T01:CDS 45.0%
! TCCCAATTCTTGGCTTGAAG+GGG - Chr4:76471414-76471433 None:intergenic 45.0%
! TCCTGAAGAGGCTACTTTCT+TGG - Chr4:76471471-76471490 None:intergenic 45.0%
! TGAAGAGGCTACTTTCTTGG+TGG - Chr4:76471468-76471487 None:intergenic 45.0%
ACCCAGTCAACAACAACGCA+TGG + Chr4:76472095-76472114 MsG0480022765.01.T01:CDS 50.0%
ACCTTGCAGCTCCCAATTCT+TGG - Chr4:76471424-76471443 None:intergenic 50.0%
AGAGAGAGCCATGGATGATG+CGG - Chr4:76471357-76471376 None:intergenic 50.0%
AGAGGCTTTCGCAGAGTTGA+AGG + Chr4:76471961-76471980 MsG0480022765.01.T01:CDS 50.0%
ATCTTGATGGGAGCCGTTGA+AGG + Chr4:76471848-76471867 MsG0480022765.01.T01:CDS 50.0%
CAAGAGGTCCACCAGCAATA+CGG - Chr4:76471877-76471896 None:intergenic 50.0%
CAGGCTATTGTGACCGGAAA+GGG + Chr4:76472040-76472059 MsG0480022765.01.T01:CDS 50.0%
CCATTGCGAGACAAAAGCTC+TGG - Chr4:76471698-76471717 None:intergenic 50.0%
CCCAGTCAACAACAACGCAT+GGG + Chr4:76472096-76472115 MsG0480022765.01.T01:CDS 50.0%
CTCTCCAGTCAAGTAAGACG+GGG - Chr4:76471549-76471568 None:intergenic 50.0%
CTCTGAGCATGGACCAAACT+TGG - Chr4:76471800-76471819 None:intergenic 50.0%
CTTTCCGGGAACAAAGTTGG+TGG - Chr4:76472128-76472147 None:intergenic 50.0%
GAAGGTTACCGTATTGCTGG+TGG + Chr4:76471866-76471885 MsG0480022765.01.T01:CDS 50.0%
GATAACTTGAGTGGCCCAGA+TGG - Chr4:76471831-76471850 None:intergenic 50.0%
GGATCCCAGATCTTTAGCGA+GGG + Chr4:76471752-76471771 MsG0480022765.01.T01:CDS 50.0%
GGTTCTTGGCGAATGTCTCT+GGG - Chr4:76471616-76471635 None:intergenic 50.0%
GTTCTCCAAAGGTCCCTTTC+CGG - Chr4:76472056-76472075 None:intergenic 50.0%
GTTGTTGACCCACTATACCC+AGG + Chr4:76471902-76471921 MsG0480022765.01.T01:CDS 50.0%
TACTTGACTGGAGAGTTCCC+AGG + Chr4:76471554-76471573 MsG0480022765.01.T01:CDS 50.0%
TCAACTCTGCGAAAGCCTCT+GGG - Chr4:76471961-76471980 None:intergenic 50.0%
TCAGGCTATTGTGACCGGAA+AGG + Chr4:76472039-76472058 MsG0480022765.01.T01:CDS 50.0%
TCCACCCTCGCTAAAGATCT+GGG - Chr4:76471759-76471778 None:intergenic 50.0%
TCTCCAGTCAAGTAAGACGG+GGG - Chr4:76471548-76471567 None:intergenic 50.0%
TCTTCAGGAAGCCCATGGTA+CGG + Chr4:76471482-76471501 MsG0480022765.01.T01:CDS 50.0%
TTCAACTCTGCGAAAGCCTC+TGG - Chr4:76471962-76471981 None:intergenic 50.0%
! CCAGAGCTTTTGTCTCGCAA+TGG + Chr4:76471695-76471714 MsG0480022765.01.T01:CDS 50.0%
! CCCATGCGTTGTTGTTGACT+GGG - Chr4:76472099-76472118 None:intergenic 50.0%
! CTCAGAGCATTCTTGCCATC+TGG + Chr4:76471813-76471832 MsG0480022765.01.T01:CDS 50.0%
! CTCGCTAAAGATCTGGGATC+CGG - Chr4:76471753-76471772 None:intergenic 50.0%
! CTCTGGGAAAACACATCCCA+AGG - Chr4:76471681-76471700 None:intergenic 50.0%
! GAGGGTGGACTTGACTACTT+GGG + Chr4:76471770-76471789 MsG0480022765.01.T01:CDS 50.0%
! GCTCCCAATTCTTGGCTTGA+AGG - Chr4:76471416-76471435 None:intergenic 50.0%
! TGCGTTGTTGTTGACTGGGT+CGG - Chr4:76472095-76472114 None:intergenic 50.0%
! TGGCAAGAATGCTCTGAGCA+TGG - Chr4:76471811-76471830 None:intergenic 50.0%
!! CATAGCAGGTGGGCTATGTT+GGG + Chr4:76471653-76471672 MsG0480022765.01.T01:CDS 50.0%
!! CTTGAAGGGGTTAGCTTGAC+TGG - Chr4:76471401-76471420 None:intergenic 50.0%
!! GGGAACAAAGTTGGTGGCAT+AGG - Chr4:76472122-76472141 None:intergenic 50.0%
AAGCTGCCTCCTGGGTATAG+TGG - Chr4:76471914-76471933 None:intergenic 55.0%
AATGGGTCAAAGCTGCCTCC+TGG - Chr4:76471923-76471942 None:intergenic 55.0%
AGCTGCCTCCTGGGTATAGT+GGG - Chr4:76471913-76471932 None:intergenic 55.0%
AGTTCCCAGGTGACTACGGA+TGG + Chr4:76471567-76471586 MsG0480022765.01.T01:CDS 55.0%
ATGGGTCAAAGCTGCCTCCT+GGG - Chr4:76471922-76471941 None:intergenic 55.0%
CCAACATAGCCCACCTGCTA+TGG - Chr4:76471655-76471674 None:intergenic 55.0%
CGGATCCCAGATCTTTAGCG+AGG + Chr4:76471751-76471770 MsG0480022765.01.T01:CDS 55.0%
CGGTGAGGCTGTATGGTTCA+AGG + Chr4:76471727-76471746 MsG0480022765.01.T01:CDS 55.0%
CGGTTCTTGGCGAATGTCTC+TGG - Chr4:76471617-76471636 None:intergenic 55.0%
CTCTCTTCACCAACCTTGGC+TGG + Chr4:76471371-76471390 MsG0480022765.01.T01:CDS 55.0%
GAGCTGCAAGGTTCACCATG+AGG + Chr4:76471432-76471451 MsG0480022765.01.T01:CDS 55.0%
GAGGCTGTATGGTTCAAGGC+CGG + Chr4:76471731-76471750 MsG0480022765.01.T01:CDS 55.0%
GCCAAGAATTGGGAGCTGCA+AGG + Chr4:76471420-76471439 MsG0480022765.01.T01:CDS 55.0%
GGAGAGTTCCCAGGTGACTA+CGG + Chr4:76471563-76471582 MsG0480022765.01.T01:CDS 55.0%
GGCTCTCTCTTCACCAACCT+TGG + Chr4:76471367-76471386 MsG0480022765.01.T01:CDS 55.0%
GGGTCAACAACCTCACCAAG+AGG - Chr4:76471893-76471912 None:intergenic 55.0%
GGTCGGCAAGATGATCAGCA+AGG - Chr4:76472078-76472097 None:intergenic 55.0%
GGTGGTAGCAGACTTCCTCA+TGG - Chr4:76471450-76471469 None:intergenic 55.0%
GTACCATGGGCTTCCTGAAG+AGG - Chr4:76471483-76471502 None:intergenic 55.0%
GTCCACCCTCGCTAAAGATC+TGG - Chr4:76471760-76471779 None:intergenic 55.0%
GTTCCCAGGTGACTACGGAT+GGG + Chr4:76471568-76471587 MsG0480022765.01.T01:CDS 55.0%
GTTGACCCACTATACCCAGG+AGG + Chr4:76471905-76471924 MsG0480022765.01.T01:CDS 55.0%
TAGCCTCTTCAGGAAGCCCA+TGG + Chr4:76471477-76471496 MsG0480022765.01.T01:CDS 55.0%
TCCCAGATCTTTAGCGAGGG+TGG + Chr4:76471755-76471774 MsG0480022765.01.T01:CDS 55.0%
TGGGCTATGTTGGGAGCCTT+GGG + Chr4:76471662-76471681 MsG0480022765.01.T01:CDS 55.0%
TGTCCCATCCGTAGTCACCT+GGG - Chr4:76471574-76471593 None:intergenic 55.0%
TGTGACCGGAAAGGGACCTT+TGG + Chr4:76472048-76472067 MsG0480022765.01.T01:CDS 55.0%
! AGGAGGCAGCTTTGACCCAT+TGG + Chr4:76471922-76471941 MsG0480022765.01.T01:CDS 55.0%
! CGAGGGTGGACTTGACTACT+TGG + Chr4:76471769-76471788 MsG0480022765.01.T01:CDS 55.0%
! CGTATTGCTGGTGGACCTCT+TGG + Chr4:76471875-76471894 MsG0480022765.01.T01:CDS 55.0%
! GCCCATGCGTTGTTGTTGAC+TGG - Chr4:76472100-76472119 None:intergenic 55.0%
! GGAGGCAGCTTTGACCCATT+GGG + Chr4:76471923-76471942 MsG0480022765.01.T01:CDS 55.0%
!! CCATAGCAGGTGGGCTATGT+TGG + Chr4:76471652-76471671 MsG0480022765.01.T01:CDS 55.0%
!! GGTTGGTGAAGAGAGAGCCA+TGG - Chr4:76471366-76471385 None:intergenic 55.0%
AAGCCTCTGGGTCGTCAGCT+AGG - Chr4:76471949-76471968 None:intergenic 60.0%
ACGGGGGCTCACCAGAGAAT+GGG - Chr4:76471532-76471551 None:intergenic 60.0%
GACTACGGATGGGACACTGC+TGG + Chr4:76471578-76471597 MsG0480022765.01.T01:CDS 60.0%
GAGCCCCCGTCTTACTTGAC+TGG + Chr4:76471542-76471561 MsG0480022765.01.T01:CDS 60.0%
GGTCGTCAGCTAGGCCCAAT+GGG - Chr4:76471940-76471959 None:intergenic 60.0%
GTGTCCCATCCGTAGTCACC+TGG - Chr4:76471575-76471594 None:intergenic 60.0%
! GTGGGCTATGTTGGGAGCCT+TGG + Chr4:76471661-76471680 MsG0480022765.01.T01:CDS 60.0%
! TGCTGGTGGACCTCTTGGTG+AGG + Chr4:76471880-76471899 MsG0480022765.01.T01:CDS 60.0%
!! ACTGGCTTGCCAGCCAAGGT+TGG - Chr4:76471383-76471402 None:intergenic 60.0%
!! CTTGACTGGCTTGCCAGCCA+AGG - Chr4:76471387-76471406 None:intergenic 60.0%
ACACGGTCTGGGCCGTACCA+TGG - Chr4:76471497-76471516 None:intergenic 65.0%
CACGGTCTGGGCCGTACCAT+GGG - Chr4:76471496-76471515 None:intergenic 65.0%
GACGGGGGCTCACCAGAGAA+TGG - Chr4:76471533-76471552 None:intergenic 65.0%
GGGTCGTCAGCTAGGCCCAA+TGG - Chr4:76471941-76471960 None:intergenic 65.0%
GGGCCTAGCTGACGACCCAG+AGG + Chr4:76471943-76471962 MsG0480022765.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76471350 76472150 76471350 ID=MsG0480022765.01;Name=MsG0480022765.01
Chr4 mRNA 76471350 76472150 76471350 ID=MsG0480022765.01.T01;Parent=MsG0480022765.01;Name=MsG0480022765.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|266
Chr4 exon 76471350 76472150 76471350 ID=MsG0480022765.01.T01:exon:23318;Parent=MsG0480022765.01.T01
Chr4 CDS 76471350 76472150 76471350 ID=MsG0480022765.01.T01:cds;Parent=MsG0480022765.01.T01
Gene Sequence

>MsG0480022765.01.T01

ATGGCCGCATCATCCATGGCTCTCTCTTCACCAACCTTGGCTGGCAAGCCAGTCAAGCTAACCCCTTCAAGCCAAGAATTGGGAGCTGCAAGGTTCACCATGAGGAAGTCTGCTACCACCAAGAAAGTAGCCTCTTCAGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACTTAGGCCCATTCTCTGGTGAGCCCCCGTCTTACTTGACTGGAGAGTTCCCAGGTGACTACGGATGGGACACTGCTGGACTTTCTGCTGACCCAGAGACATTCGCCAAGAACCGTGAACTTGAAGTCATCCATAGCAGGTGGGCTATGTTGGGAGCCTTGGGATGTGTTTTCCCAGAGCTTTTGTCTCGCAATGGTGTTAAATTCGGTGAGGCTGTATGGTTCAAGGCCGGATCCCAGATCTTTAGCGAGGGTGGACTTGACTACTTGGGTAACCCAAGTTTGGTCCATGCTCAGAGCATTCTTGCCATCTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTTGTTGACCCACTATACCCAGGAGGCAGCTTTGACCCATTGGGCCTAGCTGACGACCCAGAGGCTTTCGCAGAGTTGAAGGTTAAGGAACTCAAGAACGGTAGATTAGCCATGTTCTCTATGTTCGGATTCTTTGTTCAGGCTATTGTGACCGGAAAGGGACCTTTGGAGAACCTTGCTGATCATCTTGCCGACCCAGTCAACAACAACGCATGGGCCTATGCCACCAACTTTGTTCCCGGAAAGTGA

Protein sequence

>MsG0480022765.01.T01

MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK*