AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012281.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012281.01.T01 MTR_3g020680 93.333 195 10 2 1 194 1 193 6.69e-118 332
MsG0380012281.01.T01 MTR_3g014010 54.082 98 44 1 52 148 35 132 4.47e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012281.01.T01 AT5G40950 63.366 202 60 6 1 194 3 198 3.00e-72 217
MsG0380012281.01.T01 AT5G15220 56.989 93 39 1 57 148 45 137 2.94e-24 93.6
MsG0380012281.01.T01 AT5G15220 56.989 93 39 1 57 148 45 137 2.94e-24 93.6
MsG0380012281.01.T01 AT2G16930 65.278 72 25 0 57 128 45 116 4.14e-24 93.2
MsG0380012281.01.T01 AT2G16930 65.278 72 25 0 57 128 45 116 4.14e-24 93.2
MsG0380012281.01.T01 AT2G16930 65.278 72 25 0 57 128 45 116 4.14e-24 93.2
MsG0380012281.01.T01 AT2G16930 65.278 72 25 0 57 128 45 116 4.14e-24 93.2

Find 90 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCTCGGTGTTAAGGTTTA+TGG 0.174887 3:-14059925 MsG0380012281.01.T01:CDS
CCAGTCCCTTTCAATTTGTT+TGG 0.235270 3:-14057459 MsG0380012281.01.T01:three_prime_UTR
TGGCTATACTCTCCAGTAAT+TGG 0.247656 3:+14057479 None:intergenic
TACTCTCCAGTAATTGGTTT+GGG 0.261873 3:+14057485 None:intergenic
TCCATCAATTAGGGAGAAAA+TGG 0.286561 3:+14057969 None:intergenic
CTCCCTTCTTGTGAGCATTC+CGG 0.294541 3:+14059986 None:intergenic
GGCCGAGTCACGGCCATTCT+TGG 0.302166 3:+14059954 None:intergenic
GTTGTAAAATTTGAGAAATA+TGG 0.308551 3:-14057946 MsG0380012281.01.T01:CDS
ATTGTCCCCAAACCAATTAC+TGG 0.330213 3:-14057491 MsG0380012281.01.T01:three_prime_UTR
TAAGGAAGATAGAGTACTTC+AGG 0.334007 3:-14057765 MsG0380012281.01.T01:CDS
ACCCCGATAGCTATAGATTA+AGG 0.337827 3:-14057783 MsG0380012281.01.T01:CDS
CAGTCCCTTTCAATTTGTTT+GGG 0.338218 3:-14057458 MsG0380012281.01.T01:three_prime_UTR
AGTGGTGGAACCTGATAAAA+AGG 0.340910 3:+14060065 None:intergenic
TAATTGGTTTGGGGACAATA+AGG 0.350944 3:+14057495 None:intergenic
ATATGGACCTGACAAGAAAA+AGG 0.362247 3:-14057929 MsG0380012281.01.T01:intron
TCAACTTAGATCGGTTATAA+AGG 0.371339 3:+14057364 None:intergenic
ATGAGGGAGAAGAGAGAGAA+AGG 0.378922 3:+14060109 None:intergenic
GATGAGACGTGAACGCAAAA+AGG 0.391120 3:-14057743 MsG0380012281.01.T01:CDS
GGGACAATAAGGAAAAGTTT+TGG 0.397829 3:+14057506 None:intergenic
TAGCTATCGGGGTTCGGAAC+TGG 0.398737 3:+14057793 None:intergenic
TTCCTTAATCTATAGCTATC+GGG 0.403484 3:+14057781 None:intergenic
ATACTCTCCAGTAATTGGTT+TGG 0.406800 3:+14057484 None:intergenic
TTCTATTTGAGTAAATGAAA+TGG 0.412055 3:-14057426 MsG0380012281.01.T01:three_prime_UTR
GAAGTATAGAATCAACAATC+TGG 0.424433 3:+14057649 None:intergenic
CGGAAGGCGTCTCGGTGTTA+AGG 0.426606 3:-14059932 MsG0380012281.01.T01:CDS
GCAGGAAAGAATGTAGGAAT+TGG 0.450063 3:-14058003 MsG0380012281.01.T01:CDS
CTTAACACCGAGACGCCTTC+CGG 0.452294 3:+14059933 None:intergenic
CTTCCTTAATCTATAGCTAT+CGG 0.452680 3:+14057780 None:intergenic
AATCTATAGCTATCGGGGTT+CGG 0.454206 3:+14057787 None:intergenic
TTCCACCATGGCCGTATGCA+TGG 0.465477 3:-14060160 MsG0380012281.01.T01:exon
TATCTCTCCCTCGAATTCAT+AGG 0.467525 3:-14060023 MsG0380012281.01.T01:CDS
ACGGCCATGGTGGAAATTGT+TGG 0.468793 3:+14060168 None:intergenic
ATAGGTCAGCACTGATAATC+CGG 0.470644 3:-14060005 MsG0380012281.01.T01:CDS
TGAGGGAGAAGAGAGAGAAA+GGG 0.476960 3:+14060110 None:intergenic
GACTCGGCCGGAAGGCGTCT+CGG 0.478013 3:-14059940 MsG0380012281.01.T01:CDS
CGGCCATGGTGGAAATTGTT+GGG 0.491843 3:+14060169 None:intergenic
TGAAGATGAAGATGAAGATG+AGG 0.491863 3:+14060092 None:intergenic
TTCGGAACTGGTTCTTCTCG+TGG 0.494529 3:+14057805 None:intergenic
TCCACGCTGACGAACAATGA+TGG 0.507312 3:+14059879 None:intergenic
GACGCCTTCCGGCCGAGTCA+CGG 0.508209 3:+14059944 None:intergenic
GAAGATGAAGATGAAGATGA+GGG 0.509299 3:+14060093 None:intergenic
TCCACCATGGCCGTATGCAT+GGG 0.512029 3:-14060159 MsG0380012281.01.T01:exon
GAAATGAAACGAAGAGGAGG+TGG 0.523446 3:+14060235 None:intergenic
TACCAAGAATGGCCGTGACT+CGG 0.523716 3:-14059956 MsG0380012281.01.T01:CDS
CTCTATTGCGGCATCATCAA+CGG 0.525471 3:+14057675 None:intergenic
GGTGACCAGGTCGCTAAACC+TGG 0.525958 3:-14059904 MsG0380012281.01.T01:CDS
GACATGTCCTAGTGTTATCC+TGG 0.528646 3:-14057297 None:intergenic
GAGGCCAAGTTTGAAAACTT+AGG 0.538642 3:+14057329 None:intergenic
CACACCCAAACAAATTGAAA+GGG 0.542058 3:+14057454 None:intergenic
ACACACCCAAACAAATTGAA+AGG 0.544224 3:+14057453 None:intergenic
AGATAAGAAAGACTCAAGGA+AGG 0.545315 3:+14060209 None:intergenic
TCGGAACTGGTTCTTCTCGT+GGG 0.545521 3:+14057806 None:intergenic
AATGCTCACAAGAAGGGAGC+AGG 0.545655 3:-14059982 MsG0380012281.01.T01:CDS
AAGAATGGCCGTGACTCGGC+CGG 0.548270 3:-14059952 MsG0380012281.01.T01:CDS
AGTGCTGACCTATGAATTCG+AGG 0.555322 3:+14060015 None:intergenic
CCAAACAAATTGAAAGGGAC+TGG 0.555382 3:+14057459 None:intergenic
TCCATCATTGTTCGTCAGCG+TGG 0.555721 3:-14059880 MsG0380012281.01.T01:CDS
AATCCGGAATGCTCACAAGA+AGG 0.555772 3:-14059989 MsG0380012281.01.T01:CDS
TGGAACCAGGTTTAGCGACC+TGG 0.556823 3:+14059899 None:intergenic
AGAAGCAAAACGACTGAAGA+CGG 0.559972 3:+14057601 None:intergenic
GGAGCAGGAAGTACCAAGAA+TGG 0.561066 3:-14059967 MsG0380012281.01.T01:CDS
AACTAAGCATCAACTTAGAT+CGG 0.563138 3:+14057355 None:intergenic
TTTCACGCAGGAAAGAATGT+AGG 0.568792 3:-14058009 MsG0380012281.01.T01:CDS
TATGTTGAAACCCATGCATA+CGG 0.573839 3:+14060149 None:intergenic
ATCCGGAATGCTCACAAGAA+GGG 0.574035 3:-14059988 MsG0380012281.01.T01:CDS
TCCTTAATCTATAGCTATCG+GGG 0.582549 3:+14057782 None:intergenic
TGAGAGATAAGAAAGACTCA+AGG 0.589050 3:+14060205 None:intergenic
GATAAGAAAGACTCAAGGAA+GGG 0.591200 3:+14060210 None:intergenic
TGTTAAGGTTTATGGTGACC+AGG 0.593380 3:-14059917 MsG0380012281.01.T01:CDS
GAAACCCATGCATACGGCCA+TGG 0.595238 3:+14060155 None:intergenic
ATGGCCGTGACTCGGCCGGA+AGG 0.604039 3:-14059948 MsG0380012281.01.T01:CDS
TGTTCGTCAGCGTGGAACCA+AGG 0.607342 3:-14059872 MsG0380012281.01.T01:intron
CAGAGAAATTGAACCATACA+CGG 0.614937 3:-14057529 MsG0380012281.01.T01:three_prime_UTR
ACCCATGCATACGGCCATGG+TGG 0.620104 3:+14060158 None:intergenic
ACTCTCCAGTAATTGGTTTG+GGG 0.621618 3:+14057486 None:intergenic
AAAGAATGTAGGAATTGGCA+AGG 0.623999 3:-14057998 MsG0380012281.01.T01:CDS
GTGCTGACCTATGAATTCGA+GGG 0.626750 3:+14060016 None:intergenic
AGGGATGAAATGAAACGAAG+AGG 0.628565 3:+14060229 None:intergenic
TGACGAACAATGATGGAACC+AGG 0.634962 3:+14059886 None:intergenic
CAATTAGGGAGAAAATGGTA+TGG 0.636675 3:+14057974 None:intergenic
ACAATCTGGATTCTCTATTG+CGG 0.641419 3:+14057663 None:intergenic
ACAATCTCCAGGATAACACT+AGG 0.647628 3:+14057290 None:intergenic
TGATGGAGTCATACGAAGAG+TGG 0.649417 3:+14060047 None:intergenic
CAACCCAACAATTTCCACCA+TGG 0.652229 3:-14060172 MsG0380012281.01.T01:exon
ATTCGAGGGAGAGATACTGA+TGG 0.655380 3:+14060030 None:intergenic
TGGAGTCATACGAAGAGTGG+TGG 0.657319 3:+14060050 None:intergenic
CAAAACTTGAAGTTTCACGC+AGG 0.664756 3:-14058021 MsG0380012281.01.T01:intron
GATGAAATGAAACGAAGAGG+AGG 0.668910 3:+14060232 None:intergenic
ACGGAAGCGAGCATTAGCTG+TGG 0.714472 3:+14057694 None:intergenic
AGGACATGTCACATAGACAG+AGG 0.721372 3:+14057310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAAGAAAAAAAAAAT+TGG - Chr3:14057854-14057873 MsG0380012281.01.T01:intron 10.0%
!!! TTATATGAATTTTGAAATTA+TGG - Chr3:14057792-14057811 MsG0380012281.01.T01:CDS 10.0%
!! AAATCCATAAACTTAAAAAA+GGG + Chr3:14058895-14058914 None:intergenic 15.0%
!! CTTGATATTATAGAAAATTA+CGG - Chr3:14059264-14059283 MsG0380012281.01.T01:intron 15.0%
!!! ACATAATTTATGTTTTCTAT+AGG + Chr3:14057902-14057921 None:intergenic 15.0%
!! AAGATTTGATTGTTATGATT+TGG - Chr3:14058833-14058852 MsG0380012281.01.T01:intron 20.0%
!! AATCCATAAACTTAAAAAAG+GGG + Chr3:14058894-14058913 None:intergenic 20.0%
!! CAAAATTCATATAACAATTC+AGG + Chr3:14057786-14057805 None:intergenic 20.0%
!! CAAATCCATAAACTTAAAAA+AGG + Chr3:14058896-14058915 None:intergenic 20.0%
!! GAAAAATAATCAGAACTAAA+AGG + Chr3:14059492-14059511 None:intergenic 20.0%
!! GTTGTAAAATTTGAGAAATA+TGG - Chr3:14059591-14059610 MsG0380012281.01.T01:intron 20.0%
!! TAGAAAACATAAATTATGTC+TGG - Chr3:14057903-14057922 MsG0380012281.01.T01:intron 20.0%
!! TTCATTATTCTTTAGACATT+TGG + Chr3:14058233-14058252 None:intergenic 20.0%
!! TTCTATTTGAGTAAATGAAA+TGG - Chr3:14060111-14060130 MsG0380012281.01.T01:CDS 20.0%
!!! AAGAAGTTCTTTAAAAGTTA+TGG + Chr3:14059155-14059174 None:intergenic 20.0%
!!! CGTAATTTTCTATAATATCA+AGG + Chr3:14059266-14059285 None:intergenic 20.0%
!!! CTTATCATGATTTTAAATTG+CGG + Chr3:14059390-14059409 None:intergenic 20.0%
!!! GCAATTTAAAATCATGATAA+GGG - Chr3:14059389-14059408 MsG0380012281.01.T01:intron 20.0%
!!! TTTTAGTAAGAAAAGAATTG+TGG - Chr3:14057739-14057758 MsG0380012281.01.T01:CDS 20.0%
! AAAACATAAATTATGTCTGG+AGG - Chr3:14057906-14057925 MsG0380012281.01.T01:intron 25.0%
! GTTCTTAATGACAATTAACA+TGG + Chr3:14057818-14057837 None:intergenic 25.0%
! TATAAAGTAATGATACGAAG+AGG + Chr3:14058438-14058457 None:intergenic 25.0%
! TGAATTAGTGTAGTAATTGT+TGG - Chr3:14058255-14058274 MsG0380012281.01.T01:intron 25.0%
! TGTCATTAAGAACTATACTT+TGG - Chr3:14057825-14057844 MsG0380012281.01.T01:intron 25.0%
!! ATTTTACAACTCCATCAATT+AGG + Chr3:14059581-14059600 None:intergenic 25.0%
!! CGCAATTTAAAATCATGATA+AGG - Chr3:14059388-14059407 MsG0380012281.01.T01:intron 25.0%
!! TTTATTACCTTTTTCTTGTC+AGG + Chr3:14059618-14059637 None:intergenic 25.0%
!! TTTTACAACTCCATCAATTA+GGG + Chr3:14059580-14059599 None:intergenic 25.0%
!!! GTAATATTGTCTTCGTTTTT+TGG - Chr3:14059984-14060003 MsG0380012281.01.T01:CDS 25.0%
!!! TTTCCCCTTTTTTAAGTTTA+TGG - Chr3:14058888-14058907 MsG0380012281.01.T01:intron 25.0%
AAACATAACAGAACAGAACT+AGG + Chr3:14058154-14058173 None:intergenic 30.0%
AAATCTTATCTCAGTACACA+GGG + Chr3:14058820-14058839 None:intergenic 30.0%
AACTAAGCATCAACTTAGAT+CGG + Chr3:14060185-14060204 None:intergenic 30.0%
ACTGTCGGTGAATAAAAATT+TGG - Chr3:14058759-14058778 MsG0380012281.01.T01:intron 30.0%
ATAAAAATTTGGCACAACTG+AGG - Chr3:14058770-14058789 MsG0380012281.01.T01:intron 30.0%
CAAATACAGACTCAATGTAA+AGG + Chr3:14059351-14059370 None:intergenic 30.0%
CAATCGAAAATTCATACAGA+AGG + Chr3:14058623-14058642 None:intergenic 30.0%
CACGGATATTAGTATAAAAC+TGG - Chr3:14058492-14058511 MsG0380012281.01.T01:intron 30.0%
CTTCCTTAATCTATAGCTAT+CGG + Chr3:14059760-14059779 None:intergenic 30.0%
GAAGTATAGAATCAACAATC+TGG + Chr3:14059891-14059910 None:intergenic 30.0%
TCAACTTAGATCGGTTATAA+AGG + Chr3:14060176-14060195 None:intergenic 30.0%
TGGCAGCAATGATAAAAATT+AGG + Chr3:14058315-14058334 None:intergenic 30.0%
TTACATTGAGTCTGTATTTG+TGG - Chr3:14059351-14059370 MsG0380012281.01.T01:intron 30.0%
TTCCTTAATCTATAGCTATC+GGG + Chr3:14059759-14059778 None:intergenic 30.0%
TTCTCTTTGTATGCATTTCT+AGG + Chr3:14059027-14059046 None:intergenic 30.0%
! ACTGTACTGATCAAAAGTAT+CGG + Chr3:14059116-14059135 None:intergenic 30.0%
! GGTGACTTTGATTTAAAACA+TGG + Chr3:14059231-14059250 None:intergenic 30.0%
! TCTTCATCTTCCTTTTTATC+AGG - Chr3:14057462-14057481 MsG0380012281.01.T01:three_prime_UTR 30.0%
! TGTTATGATTTGGCACAATT+TGG - Chr3:14058843-14058862 MsG0380012281.01.T01:intron 30.0%
! TTCACCTAAGTTTTCAAACT+TGG - Chr3:14060204-14060223 MsG0380012281.01.T01:five_prime_UTR 30.0%
! TTTGCTATGAAATCTACTGT+CGG - Chr3:14058744-14058763 MsG0380012281.01.T01:intron 30.0%
!! AATCATGATAAGGGTGTTAT+AGG - Chr3:14059398-14059417 MsG0380012281.01.T01:intron 30.0%
!! AGCTAGTTAATTTGTACTCT+AGG + Chr3:14059676-14059695 None:intergenic 30.0%
AAAGAATGTAGGAATTGGCA+AGG - Chr3:14059539-14059558 MsG0380012281.01.T01:intron 35.0%
AATGTAAGAGTGGAGGTTTA+TGG - Chr3:14058587-14058606 MsG0380012281.01.T01:intron 35.0%
ACAATCTGGATTCTCTATTG+CGG + Chr3:14059877-14059896 None:intergenic 35.0%
ACACACCCAAACAAATTGAA+AGG + Chr3:14060087-14060106 None:intergenic 35.0%
AGATAAGAAAGACTCAAGGA+AGG + Chr3:14057331-14057350 None:intergenic 35.0%
ATACTCTCCAGTAATTGGTT+TGG + Chr3:14060056-14060075 None:intergenic 35.0%
ATATCAAGGATCACCACTAA+CGG + Chr3:14059252-14059271 None:intergenic 35.0%
ATATGGACCTGACAAGAAAA+AGG - Chr3:14059608-14059627 MsG0380012281.01.T01:intron 35.0%
ATTGAGTCTGTATTTGTGGT+TGG - Chr3:14059355-14059374 MsG0380012281.01.T01:intron 35.0%
CAAATCTTATCTCAGTACAC+AGG + Chr3:14058821-14058840 None:intergenic 35.0%
CAATTAGGGAGAAAATGGTA+TGG + Chr3:14059566-14059585 None:intergenic 35.0%
CACACCCAAACAAATTGAAA+GGG + Chr3:14060086-14060105 None:intergenic 35.0%
CAGAACTAAAAGGAACAGTA+AGG + Chr3:14059482-14059501 None:intergenic 35.0%
CAGAGAAATTGAACCATACA+CGG - Chr3:14060008-14060027 MsG0380012281.01.T01:CDS 35.0%
CAGAGTAATAAATGCTACTG+TGG - Chr3:14059192-14059211 MsG0380012281.01.T01:intron 35.0%
CAGTAGATTTCATAGCAAAC+AGG + Chr3:14058743-14058762 None:intergenic 35.0%
CTATATCTACCTATTCAGAG+GGG + Chr3:14058720-14058739 None:intergenic 35.0%
CTTCAGAAAGAATGTAAGAG+TGG - Chr3:14058577-14058596 MsG0380012281.01.T01:intron 35.0%
GAAATGCATACAAAGAGAAG+TGG - Chr3:14059028-14059047 MsG0380012281.01.T01:intron 35.0%
GAAGATGAAGATGAAGATGA+GGG + Chr3:14057447-14057466 None:intergenic 35.0%
GATAAGAAAGACTCAAGGAA+GGG + Chr3:14057330-14057349 None:intergenic 35.0%
GCTATATCTACCTATTCAGA+GGG + Chr3:14058721-14058740 None:intergenic 35.0%
TAAATCAAAGTCACCGTTAG+TGG - Chr3:14059236-14059255 MsG0380012281.01.T01:intron 35.0%
TATGTTGAAACCCATGCATA+CGG + Chr3:14057391-14057410 None:intergenic 35.0%
TCCATCAATTAGGGAGAAAA+TGG + Chr3:14059571-14059590 None:intergenic 35.0%
TCCTTAATCTATAGCTATCG+GGG + Chr3:14059758-14059777 None:intergenic 35.0%
TGAAGATGAAGATGAAGATG+AGG + Chr3:14057448-14057467 None:intergenic 35.0%
TGAGAGATAAGAAAGACTCA+AGG + Chr3:14057335-14057354 None:intergenic 35.0%
TTGAGTCTGTATTTGTGGTT+GGG - Chr3:14059356-14059375 MsG0380012281.01.T01:intron 35.0%
! ACCATTTTCTCCCTAATTGA+TGG - Chr3:14059567-14059586 MsG0380012281.01.T01:intron 35.0%
! CAGTCCCTTTCAATTTGTTT+GGG - Chr3:14060079-14060098 MsG0380012281.01.T01:CDS 35.0%
! GAAAGTTAGTGTGTCATTCA+CGG - Chr3:14058474-14058493 MsG0380012281.01.T01:intron 35.0%
! GGGACAATAAGGAAAAGTTT+TGG + Chr3:14060034-14060053 None:intergenic 35.0%
! TAAGGAAGATAGAGTACTTC+AGG - Chr3:14059772-14059791 MsG0380012281.01.T01:intron 35.0%
! TACTCTCCAGTAATTGGTTT+GGG + Chr3:14060055-14060074 None:intergenic 35.0%
! TTTTATCATTGCTGCCAACA+TGG - Chr3:14058318-14058337 MsG0380012281.01.T01:intron 35.0%
!! AATTTGTACTCTAGGATTGC+AGG + Chr3:14059668-14059687 None:intergenic 35.0%
!! TAATTGGTTTGGGGACAATA+AGG + Chr3:14060045-14060064 None:intergenic 35.0%
AATCTATAGCTATCGGGGTT+CGG + Chr3:14059753-14059772 None:intergenic 40.0%
ACCCCGATAGCTATAGATTA+AGG - Chr3:14059754-14059773 MsG0380012281.01.T01:intron 40.0%
AGAAGCAAAACGACTGAAGA+CGG + Chr3:14059939-14059958 None:intergenic 40.0%
AGAGAATGAAAGACACACCT+TGG + Chr3:14057685-14057704 None:intergenic 40.0%
AGGGATGAAATGAAACGAAG+AGG + Chr3:14057311-14057330 None:intergenic 40.0%
AGTACACAGGGTTAACTACA+TGG + Chr3:14058808-14058827 None:intergenic 40.0%
ATGCTACTGTGGAAGTAATG+AGG - Chr3:14059203-14059222 MsG0380012281.01.T01:intron 40.0%
ATTGTCCCCAAACCAATTAC+TGG - Chr3:14060046-14060065 MsG0380012281.01.T01:CDS 40.0%
CAAAACTTGAAGTTTCACGC+AGG - Chr3:14059516-14059535 MsG0380012281.01.T01:intron 40.0%
CAGAAAGAATGTAAGAGTGG+AGG - Chr3:14058580-14058599 MsG0380012281.01.T01:intron 40.0%
CCAAACAAATTGAAAGGGAC+TGG + Chr3:14060081-14060100 None:intergenic 40.0%
GAGGCCAAGTTTGAAAACTT+AGG + Chr3:14060211-14060230 None:intergenic 40.0%
GATGAAATGAAACGAAGAGG+AGG + Chr3:14057308-14057327 None:intergenic 40.0%
GCAGGAAAGAATGTAGGAAT+TGG - Chr3:14059534-14059553 MsG0380012281.01.T01:intron 40.0%
GGCTATATCTACCTATTCAG+AGG + Chr3:14058722-14058741 None:intergenic 40.0%
TAAGGTCAAGTACACCATGT+TGG + Chr3:14058335-14058354 None:intergenic 40.0%
TATCTCTCCCTCGAATTCAT+AGG - Chr3:14057514-14057533 MsG0380012281.01.T01:three_prime_UTR 40.0%
TGAGTCTGTATTTGTGGTTG+GGG - Chr3:14059357-14059376 MsG0380012281.01.T01:intron 40.0%
TGCTACTGTGGAAGTAATGA+GGG - Chr3:14059204-14059223 MsG0380012281.01.T01:intron 40.0%
TGGAGGTTTATGGTTTGATG+TGG - Chr3:14058597-14058616 MsG0380012281.01.T01:intron 40.0%
TGGCTATACTCTCCAGTAAT+TGG + Chr3:14060061-14060080 None:intergenic 40.0%
TGTTAAGGTTTATGGTGACC+AGG - Chr3:14057620-14057639 MsG0380012281.01.T01:three_prime_UTR 40.0%
TTTATAAGAGTGACCTGACG+TGG - Chr3:14058452-14058471 MsG0380012281.01.T01:intron 40.0%
TTTCACGCAGGAAAGAATGT+AGG - Chr3:14059528-14059547 MsG0380012281.01.T01:intron 40.0%
! AGTGGTGGAACCTGATAAAA+AGG + Chr3:14057475-14057494 None:intergenic 40.0%
! CCAGTCCCTTTCAATTTGTT+TGG - Chr3:14060078-14060097 MsG0380012281.01.T01:CDS 40.0%
!! ACTCTCCAGTAATTGGTTTG+GGG + Chr3:14060054-14060073 None:intergenic 40.0%
!! ACTTTTCTCGGTTCGAAAAC+AGG - Chr3:14057968-14057987 MsG0380012281.01.T01:CDS 40.0%
!! ATAGGTCAGCACTGATAATC+CGG - Chr3:14057532-14057551 MsG0380012281.01.T01:three_prime_UTR 40.0%
!! ATTTGCTTTTGCGATGCCAT+TGG - Chr3:14059311-14059330 MsG0380012281.01.T01:intron 40.0%
!! TCAGCATTGACAGTTGAGTT+TGG + Chr3:14057932-14057951 None:intergenic 40.0%
!! TTCGAACCGAGAAAAGTGTT+CGG + Chr3:14057965-14057984 None:intergenic 40.0%
AATCCGGAATGCTCACAAGA+AGG - Chr3:14057548-14057567 MsG0380012281.01.T01:three_prime_UTR 45.0%
ACACACTAACTTTCCACGTC+AGG + Chr3:14058468-14058487 None:intergenic 45.0%
ACAGAACAGAACTAGGCACT+TGG + Chr3:14058147-14058166 None:intergenic 45.0%
ACTTGACCTTAAGTGCGCTT+TGG - Chr3:14058344-14058363 MsG0380012281.01.T01:intron 45.0%
AGGACATGTCACATAGACAG+AGG + Chr3:14060230-14060249 None:intergenic 45.0%
ATCCGGAATGCTCACAAGAA+GGG - Chr3:14057549-14057568 MsG0380012281.01.T01:three_prime_UTR 45.0%
ATGAGGGAGAAGAGAGAGAA+AGG + Chr3:14057431-14057450 None:intergenic 45.0%
ATTCGAGGGAGAGATACTGA+TGG + Chr3:14057510-14057529 None:intergenic 45.0%
CAACCCAACAATTTCCACCA+TGG - Chr3:14057365-14057384 MsG0380012281.01.T01:three_prime_UTR 45.0%
CTCTATTGCGGCATCATCAA+CGG + Chr3:14059865-14059884 None:intergenic 45.0%
CTGTATTTGTGGTTGGGGTT+GGG - Chr3:14059362-14059381 MsG0380012281.01.T01:intron 45.0%
CTTGACCTTAAGTGCGCTTT+GGG - Chr3:14058345-14058364 MsG0380012281.01.T01:intron 45.0%
GAAATGAAACGAAGAGGAGG+TGG + Chr3:14057305-14057324 None:intergenic 45.0%
GATGAGACGTGAACGCAAAA+AGG - Chr3:14059794-14059813 MsG0380012281.01.T01:intron 45.0%
GGTTCTTGAACTCTCACCAA+TGG + Chr3:14059330-14059349 None:intergenic 45.0%
TCACAGTTTGTGCAATCTCG+CGG - Chr3:14058647-14058666 MsG0380012281.01.T01:intron 45.0%
TCTGTATTTGTGGTTGGGGT+TGG - Chr3:14059361-14059380 MsG0380012281.01.T01:intron 45.0%
TGAGGGAGAAGAGAGAGAAA+GGG + Chr3:14057430-14057449 None:intergenic 45.0%
TGATGGAGTCATACGAAGAG+TGG + Chr3:14057493-14057512 None:intergenic 45.0%
TGTATTTGTGGTTGGGGTTG+GGG - Chr3:14059363-14059382 MsG0380012281.01.T01:intron 45.0%
! CAGTTGTGTGCGTGAGTTTT+AGG - Chr3:14057999-14058018 MsG0380012281.01.T01:CDS 45.0%
! GCTAGACCGAACACTTTTCT+CGG - Chr3:14057956-14057975 MsG0380012281.01.T01:CDS 45.0%
! GTGCTGACCTATGAATTCGA+GGG + Chr3:14057524-14057543 None:intergenic 45.0%
! TGACGAACAATGATGGAACC+AGG + Chr3:14057654-14057673 None:intergenic 45.0%
! TGTGCAATCTCGCGGATTAA+GGG - Chr3:14058655-14058674 MsG0380012281.01.T01:intron 45.0%
! TTGTGCAATCTCGCGGATTA+AGG - Chr3:14058654-14058673 MsG0380012281.01.T01:intron 45.0%
!! AGTGCTGACCTATGAATTCG+AGG + Chr3:14057525-14057544 None:intergenic 45.0%
!! CGTCTCGGTGTTAAGGTTTA+TGG - Chr3:14057612-14057631 MsG0380012281.01.T01:three_prime_UTR 45.0%
!! GGAAAAGTTTTGGCCGTGTA+TGG + Chr3:14060024-14060043 None:intergenic 45.0%
!!! TTGTGTGCGTGAGTTTTAGG+TGG - Chr3:14058002-14058021 MsG0380012281.01.T01:CDS 45.0%
AATGCTCACAAGAAGGGAGC+AGG - Chr3:14057555-14057574 MsG0380012281.01.T01:three_prime_UTR 50.0%
CGTGCATTTCCCCTCTGAAT+AGG - Chr3:14058708-14058727 MsG0380012281.01.T01:intron 50.0%
CTCCCTTCTTGTGAGCATTC+CGG + Chr3:14057554-14057573 None:intergenic 50.0%
GGCACAACTGAGGCACAATT+TGG - Chr3:14058780-14058799 MsG0380012281.01.T01:intron 50.0%
GTATTTGTGGTTGGGGTTGG+GGG - Chr3:14059364-14059383 MsG0380012281.01.T01:intron 50.0%
TACCAAGAATGGCCGTGACT+CGG - Chr3:14057581-14057600 MsG0380012281.01.T01:three_prime_UTR 50.0%
TCCACGCTGACGAACAATGA+TGG + Chr3:14057661-14057680 None:intergenic 50.0%
TCCATCATTGTTCGTCAGCG+TGG - Chr3:14057657-14057676 MsG0380012281.01.T01:exon 50.0%
TGAAACGAAGAGGAGGTGGA+TGG + Chr3:14057301-14057320 None:intergenic 50.0%
TGGAGTCATACGAAGAGTGG+TGG + Chr3:14057490-14057509 None:intergenic 50.0%
! ACGGCCATGGTGGAAATTGT+TGG + Chr3:14057372-14057391 None:intergenic 50.0%
! CGGCCATGGTGGAAATTGTT+GGG + Chr3:14057371-14057390 None:intergenic 50.0%
! TCGGAACTGGTTCTTCTCGT+GGG + Chr3:14059734-14059753 None:intergenic 50.0%
! TTCGGAACTGGTTCTTCTCG+TGG + Chr3:14059735-14059754 None:intergenic 50.0%
!! GGAGCAGGAAGTACCAAGAA+TGG - Chr3:14057570-14057589 MsG0380012281.01.T01:three_prime_UTR 50.0%
ACGGAAGCGAGCATTAGCTG+TGG + Chr3:14059846-14059865 None:intergenic 55.0%
CTCACGCACACAACTGTGTG+AGG + Chr3:14057995-14058014 None:intergenic 55.0%
CTTAACACCGAGACGCCTTC+CGG + Chr3:14057607-14057626 None:intergenic 55.0%
GAAACCCATGCATACGGCCA+TGG + Chr3:14057385-14057404 None:intergenic 55.0%
TAGCTATCGGGGTTCGGAAC+TGG + Chr3:14059747-14059766 None:intergenic 55.0%
TCCACCATGGCCGTATGCAT+GGG - Chr3:14057378-14057397 MsG0380012281.01.T01:three_prime_UTR 55.0%
TGGAACCAGGTTTAGCGACC+TGG + Chr3:14057641-14057660 None:intergenic 55.0%
TGTTCGTCAGCGTGGAACCA+AGG - Chr3:14057665-14057684 MsG0380012281.01.T01:CDS 55.0%
TTCCACCATGGCCGTATGCA+TGG - Chr3:14057377-14057396 MsG0380012281.01.T01:three_prime_UTR 55.0%
TTCCGCCCAAAGCGCACTTA+AGG + Chr3:14058353-14058372 None:intergenic 55.0%
! GACCTTAAGTGCGCTTTGGG+CGG - Chr3:14058348-14058367 MsG0380012281.01.T01:intron 55.0%
ACCCATGCATACGGCCATGG+TGG + Chr3:14057382-14057401 None:intergenic 60.0%
GGTGACCAGGTCGCTAAACC+TGG - Chr3:14057633-14057652 MsG0380012281.01.T01:three_prime_UTR 60.0%
! AAGAATGGCCGTGACTCGGC+CGG - Chr3:14057585-14057604 MsG0380012281.01.T01:three_prime_UTR 60.0%
!! CGGAAGGCGTCTCGGTGTTA+AGG - Chr3:14057605-14057624 MsG0380012281.01.T01:three_prime_UTR 60.0%
GGCCGAGTCACGGCCATTCT+TGG + Chr3:14057586-14057605 None:intergenic 65.0%
GACGCCTTCCGGCCGAGTCA+CGG + Chr3:14057596-14057615 None:intergenic 70.0%
! ATGGCCGTGACTCGGCCGGA+AGG - Chr3:14057589-14057608 MsG0380012281.01.T01:three_prime_UTR 70.0%
!! GACTCGGCCGGAAGGCGTCT+CGG - Chr3:14057597-14057616 MsG0380012281.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 14057300 14060259 14057300 ID=MsG0380012281.01;Name=MsG0380012281.01
Chr3 mRNA 14057300 14060259 14057300 ID=MsG0380012281.01.T01;Parent=MsG0380012281.01;Name=MsG0380012281.01.T01;_AED=0.49;_eAED=0.49;_QI=84|1|1|1|1|1|3|360|194
Chr3 exon 14057300 14057839 14057300 ID=MsG0380012281.01.T01:exon:645;Parent=MsG0380012281.01.T01
Chr3 exon 14057930 14058031 14057930 ID=MsG0380012281.01.T01:exon:644;Parent=MsG0380012281.01.T01
Chr3 exon 14059873 14060259 14059873 ID=MsG0380012281.01.T01:exon:643;Parent=MsG0380012281.01.T01
Chr3 five_prime_UTR 14060176 14060259 14060176 ID=MsG0380012281.01.T01:five_prime_utr;Parent=MsG0380012281.01.T01
Chr3 CDS 14059873 14060175 14059873 ID=MsG0380012281.01.T01:cds;Parent=MsG0380012281.01.T01
Chr3 CDS 14057930 14058031 14057930 ID=MsG0380012281.01.T01:cds;Parent=MsG0380012281.01.T01
Chr3 CDS 14057660 14057839 14057660 ID=MsG0380012281.01.T01:cds;Parent=MsG0380012281.01.T01
Chr3 three_prime_UTR 14057300 14057659 14057300 ID=MsG0380012281.01.T01:three_prime_utr;Parent=MsG0380012281.01.T01
Gene Sequence

>MsG0380012281.01.T01

ATGGCCGTATGCATGGGTTTCAACATAGCAACATCATTCAAATCCCTTTCTCTCTCTTCTCCCTCATCTTCATCTTCATCTTCATCTTCCTTTTTATCAGGTTCCACCACTCTTCGTATGACTCCATCAGTATCTCTCCCTCGAATTCATAGGTCAGCACTGATAATCCGGAATGCTCACAAGAAGGGAGCAGGAAGTACCAAGAATGGCCGTGACTCGGCCGGAAGGCGTCTCGGTGTTAAGGTTTATGGTGACCAGGTCGCTAAACCTGGTTCCATCATTGTTCGTCAGCGTGGAACCAAGTTTCACGCAGGAAAGAATGTAGGAATTGGCAAGGACCATACCATTTTCTCCCTAATTGATGGAGTTGTAAAATTTGAGAAATATGGACCTGACAAGAAAAAGATCAGTGTTTACCCACGAGAAGAACCAGTTCCGAACCCCGATAGCTATAGATTAAGGAAGATAGAGTACTTCAGGATGAGACGTGAACGCAAAAAGGCTGCTCAAGAAAGAAGAGCTTTTCAACCACAGCTAATGCTCGCTTCCGTTGATGATGCCGCAATAGAGAATCCAGATTGTTGA

Protein sequence

>MsG0380012281.01.T01

MAVCMGFNIATSFKSLSLSSPSSSSSSSSSFLSGSTTLRMTPSVSLPRIHRSALIIRNAHKKGAGSTKNGRDSAGRRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGVVKFEKYGPDKKKISVYPREEPVPNPDSYRLRKIEYFRMRRERKKAAQERRAFQPQLMLASVDDAAIENPDC*