AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040072.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040072.01.T01 MTR_7g084160 96.911 259 8 0 1 259 1 259 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040072.01.T01 AT3G26710 79.695 197 39 1 63 258 68 264 4.51e-112 323

Find 89 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTAACTTGCTCCTTTC+TGG 0.008598 7:+72732201 None:intergenic
TTACATTTACACTGCTTTAA+AGG 0.129447 7:+72733732 None:intergenic
AAACGAAGTTTCTTTGGTTT+TGG 0.222781 7:+72733530 None:intergenic
TGCCGGATGTTGGTAATAAT+TGG 0.244857 7:-72732385 MsG0780040072.01.T01:CDS
TTATCTCTGTTCCTGGTCTT+TGG 0.246420 7:-72733376 MsG0780040072.01.T01:CDS
TGGAAATCTGCTTAGCAAAT+AGG 0.273649 7:+72731745 None:intergenic
AAGGGCATGGTTTATGTTAA+AGG 0.273810 7:-72732079 MsG0780040072.01.T01:CDS
TTCTCATTTGCTCGACTTGT+TGG 0.274703 7:+72732122 None:intergenic
TATAGATGAAGGTGGAAATA+AGG 0.285189 7:-72733227 MsG0780040072.01.T01:CDS
CACTGCTTTAAAGGTTTAGA+TGG 0.285841 7:+72733741 None:intergenic
TATGCAGAGGAGCTTATTAC+TGG 0.309200 7:-72732234 MsG0780040072.01.T01:intron
AGGGATAAACGAAGTTTCTT+TGG 0.332452 7:+72733524 None:intergenic
ATCATATCATAAATTACATT+TGG 0.332883 7:+72731725 MsG0780040071.01.T01:three_prime_UTR
AGAGACTACTGGTTACTCTT+TGG 0.348247 7:-72733429 MsG0780040072.01.T01:CDS
TGTAAGTAACAAGAGAGAAT+TGG 0.349828 7:+72733451 None:intergenic
CAACATGTTCAATGGCTACT+TGG 0.358770 7:-72731830 MsG0780040072.01.T01:three_prime_UTR
GCTAGTTATTATACTTCTCT+TGG 0.366409 7:-72733407 MsG0780040072.01.T01:CDS
ACCAACATCCGGCACGGTTA+TGG 0.378863 7:+72732394 None:intergenic
TCTTGTAGTACATCCTGTTC+TGG 0.379842 7:+72732031 None:intergenic
AGAGGGAGATGGTGTGGATG+TGG 0.397897 7:+72733614 None:intergenic
GGAACTCAAGTTTAGTGAAA+AGG 0.402521 7:-72732098 MsG0780040072.01.T01:CDS
GGTTTACCAGTTGGATTTAA+CGG 0.402953 7:+72733699 None:intergenic
GTAAGTAACAAGAGAGAATT+GGG 0.407638 7:+72733452 None:intergenic
ATGTTGGTAATAATTGGTTT+TGG 0.409602 7:-72732379 MsG0780040072.01.T01:CDS
TTTCTTCTATGAAGGTTTGA+AGG 0.411553 7:-72732500 MsG0780040072.01.T01:intron
TGGGATTTAATATTTGTTGT+TGG 0.429033 7:+72733471 None:intergenic
CTGCCATGAGTGTAGTTTGT+TGG 0.432672 7:+72733571 None:intergenic
AACTTTGCAGTGGTTGATAG+AGG 0.442912 7:-72733157 MsG0780040072.01.T01:CDS
AAGGCACCAAGTCAAGTTGC+CGG 0.443037 7:-72733208 MsG0780040072.01.T01:CDS
TTGTCAGAAATCGTTGTTCA+AGG 0.452015 7:-72732151 MsG0780040072.01.T01:CDS
AATGGATATGGAGAAGATGA+TGG 0.454233 7:+72733677 None:intergenic
GAAGAGAACGGAGAGGGAGA+TGG 0.458645 7:+72733603 None:intergenic
GAACTCAAGTTTAGTGAAAA+GGG 0.464874 7:-72732097 MsG0780040072.01.T01:CDS
TTAGCAAATAGGCGTGCTAT+TGG 0.465412 7:+72731756 None:intergenic
AGCATCATCTTGGCAGCCAT+TGG 0.466070 7:+72733644 None:intergenic
TCTAGACCGTTAAATCCAAC+TGG 0.470518 7:-72733705 MsG0780040072.01.T01:five_prime_UTR
GAGGGAGATGGTGTGGATGT+GGG 0.487288 7:+72733615 None:intergenic
AAGGAGTGATGGTTCCCAGC+AGG 0.487689 7:-72732481 MsG0780040072.01.T01:CDS
AAGATGATGGGTTTACCAGT+TGG 0.490440 7:+72733690 None:intergenic
AAAATGATAGTTAAAGAAGA+TGG 0.490576 7:-72732178 MsG0780040072.01.T01:CDS
ACCTCCCCGGCAACTTGACT+TGG 0.492320 7:+72733202 None:intergenic
TTACGCCAGTGGACTTAAGA+TGG 0.498639 7:+72732352 None:intergenic
AGGCACCAAGTCAAGTTGCC+GGG 0.499075 7:-72733207 MsG0780040072.01.T01:CDS
ATCATATACAACATGTTCAA+TGG 0.499085 7:-72731838 MsG0780040072.01.T01:three_prime_UTR
GTTAACCATCTTAAGTCCAC+TGG 0.502864 7:-72732357 MsG0780040072.01.T01:CDS
AACCAATTATTACCAACATC+CGG 0.508506 7:+72732383 None:intergenic
TGGGGACAACAGCATCATCT+TGG 0.515410 7:+72733634 None:intergenic
AGGGAGATGGTGTGGATGTG+GGG 0.515801 7:+72733616 None:intergenic
GGATGTACTACAAGAATGAA+TGG 0.518925 7:-72732023 MsG0780040072.01.T01:three_prime_UTR
ACCATAACCGTGCCGGATGT+TGG 0.520691 7:-72732395 MsG0780040072.01.T01:CDS
TTGTTACTTACAGAGACTAC+TGG 0.521171 7:-72733440 MsG0780040072.01.T01:CDS
TTTCTGCACTTGCATCAGCC+TGG 0.522655 7:-72732438 MsG0780040072.01.T01:CDS
GAACGGAGAGGGAGATGGTG+TGG 0.523786 7:+72733608 None:intergenic
CAAGTTTAGTGAAAAGGGCA+TGG 0.525721 7:-72732092 MsG0780040072.01.T01:CDS
AAATAAGCTATGTTTCGAAA+AGG 0.526930 7:+72732056 None:intergenic
GAAGTGGAAGAGAACGGAGA+GGG 0.529733 7:+72733597 None:intergenic
CGAATATCAAAACTTTCAGC+AGG 0.533525 7:+72731930 None:intergenic
TGGAGTGAAGTGGAAGAGAA+CGG 0.534314 7:+72733591 None:intergenic
ATGAAGGTTTGAAGGAGTGA+TGG 0.536342 7:-72732492 MsG0780040072.01.T01:intron
TGTAGTTTGTTGGAGTGAAG+TGG 0.546339 7:+72733581 None:intergenic
ATGGATATGGAGAAGATGAT+GGG 0.549721 7:+72733678 None:intergenic
ATAATGTTCTAAAGTGAACT+AGG 0.552989 7:+72731898 None:intergenic
AGGAGTGATGGTTCCCAGCA+GGG 0.555627 7:-72732480 MsG0780040072.01.T01:CDS
GCACAAGGGAAACACTTGCC+AGG 0.561065 7:+72732420 None:intergenic
ACAAGTCGAGCAAATGAGAA+AGG 0.564418 7:-72732119 MsG0780040072.01.T01:CDS
TACTCGTAATAACTTTGCAG+TGG 0.569315 7:-72733167 MsG0780040072.01.T01:CDS
GCACGGTTATGGTGAGCACA+AGG 0.570393 7:+72732405 None:intergenic
GGAGTGATGGTTCCCAGCAG+GGG 0.585564 7:-72732479 MsG0780040072.01.T01:CDS
TGTGCTCACCATAACCGTGC+CGG 0.593329 7:-72732402 MsG0780040072.01.T01:CDS
GAATTCAGCACTCTCGTGAA+GGG 0.593669 7:+72733505 None:intergenic
TCCATTCTCTGCAAAACCAA+TGG 0.596591 7:-72733660 MsG0780040072.01.T01:exon
CAAACGTTCTGTCAAATCCA+AGG 0.596958 7:-72733345 MsG0780040072.01.T01:intron
ACTCCAACAAACTACACTCA+TGG 0.600149 7:-72733574 MsG0780040072.01.T01:CDS
TTGAACAACGATTTCTGACA+AGG 0.602980 7:+72732153 None:intergenic
TGAATTCAGCACTCTCGTGA+AGG 0.606564 7:+72733504 None:intergenic
AATGCCTTCACTTACGCCAG+TGG 0.608223 7:+72732341 None:intergenic
TTGATGAGAGACCAAAGACC+AGG 0.611561 7:+72733365 None:intergenic
AAAGAATGATAGTACCTCCC+CGG 0.616255 7:+72733189 None:intergenic
TGAAGTGGAAGAGAACGGAG+AGG 0.617407 7:+72733596 None:intergenic
CTGGACTCGAGCATCCAGAA+AGG 0.624164 7:-72732215 MsG0780040072.01.T01:CDS
ACCAAGTCAAGTTGCCGGGG+AGG 0.629980 7:-72733203 MsG0780040072.01.T01:CDS
ATTATTACCAACATCCGGCA+CGG 0.637855 7:+72732388 None:intergenic
GAGTGATGGTTCCCAGCAGG+GGG 0.640157 7:-72732478 MsG0780040072.01.T01:CDS
GGCACCAAGTCAAGTTGCCG+GGG 0.643673 7:-72733206 MsG0780040072.01.T01:CDS
TAAAGTGAACTAGGTGCCTG+AGG 0.645372 7:+72731907 None:intergenic
AGCAGCCACTGGCTAAACAC+AGG 0.650603 7:-72731985 MsG0780040072.01.T01:three_prime_UTR
CACGGTTATGGTGAGCACAA+GGG 0.668400 7:+72732406 None:intergenic
TGTACTACAAGAATGAATGG+AGG 0.720850 7:-72732020 MsG0780040072.01.T01:three_prime_UTR
ATATGCCTGTGTTTAGCCAG+TGG 0.728474 7:+72731980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATATCATAAATTACATT+TGG + Chr7:72733719-72733738 None:intergenic 15.0%
!! TAATGACATTAATAACTAAA+TGG + Chr7:72732820-72732839 None:intergenic 15.0%
!! AAAATGATAGTTAAAGAAGA+TGG - Chr7:72733263-72733282 MsG0780040072.01.T01:intron 20.0%
!! ATATGTTAACACCAAATAAT+GGG + Chr7:72732781-72732800 None:intergenic 20.0%
!! ATTAATTAAGAGGCAAAAAT+AGG + Chr7:72732879-72732898 None:intergenic 20.0%
!! CAACAAAAAAAAAAACAAAG+TGG + Chr7:72732149-72732168 None:intergenic 20.0%
!!! TCTTTTACAACATTAAAGAT+TGG + Chr7:72732731-72732750 None:intergenic 20.0%
! AAATAAGCTATGTTTCGAAA+AGG + Chr7:72733388-72733407 None:intergenic 25.0%
! AATGAATGAATGAATTACCT+TGG + Chr7:72732116-72732135 None:intergenic 25.0%
! AATGATCAATAGAAGATGTT+TGG - Chr7:72732368-72732387 MsG0780040072.01.T01:CDS 25.0%
! ATCATATACAACATGTTCAA+TGG - Chr7:72733603-72733622 MsG0780040072.01.T01:CDS 25.0%
! CAATTAAAGAGAGAATGTAA+TGG + Chr7:72732330-72732349 None:intergenic 25.0%
! GATATGTTAACACCAAATAA+TGG + Chr7:72732782-72732801 None:intergenic 25.0%
! TCATTAAGTTACTAGAATGA+GGG + Chr7:72732609-72732628 None:intergenic 25.0%
! TGACGTAATGATTAATTAAG+AGG + Chr7:72732889-72732908 None:intergenic 25.0%
! TTACATTTACACTGCTTTAA+AGG + Chr7:72731712-72731731 MsG0780040071.01.T01:three_prime_UTR 25.0%
!! AAGAAGACTTTTATAGATGA+AGG - Chr7:72732203-72732222 MsG0780040072.01.T01:CDS 25.0%
!! AATCGAATTTTTACGTTCTT+TGG - Chr7:72732645-72732664 MsG0780040072.01.T01:intron 25.0%
!! ACATAGAGACTTTTGATAAA+TGG + Chr7:72732755-72732774 None:intergenic 25.0%
!!! ACATTAAAGATTGGCTTAAT+TGG + Chr7:72732722-72732741 None:intergenic 25.0%
!!! ATAATGTTCTAAAGTGAACT+AGG + Chr7:72733546-72733565 None:intergenic 25.0%
!!! ATGTTGGTAATAATTGGTTT+TGG - Chr7:72733062-72733081 MsG0780040072.01.T01:intron 25.0%
!!! CATTATGATTCTTACTTTTG+AGG - Chr7:72733560-72733579 MsG0780040072.01.T01:CDS 25.0%
!!! TACTCATTGCATTTAATTTG+TGG + Chr7:72732397-72732416 None:intergenic 25.0%
!!! TGGGATTTAATATTTGTTGT+TGG + Chr7:72731973-72731992 None:intergenic 25.0%
!!! TTTTTCTGTTTCTTCTATGA+AGG - Chr7:72732933-72732952 MsG0780040072.01.T01:intron 25.0%
AACCAATTATTACCAACATC+CGG + Chr7:72733061-72733080 None:intergenic 30.0%
CAAGTTAAATGTTCTAACCA+TGG - Chr7:72732482-72732501 MsG0780040072.01.T01:CDS 30.0%
GAACTCAAGTTTAGTGAAAA+GGG - Chr7:72733344-72733363 MsG0780040072.01.T01:intron 30.0%
GATTTCACCAATGCTTAAAA+TGG + Chr7:72732459-72732478 None:intergenic 30.0%
GCTAGTTATTATACTTCTCT+TGG - Chr7:72732034-72732053 MsG0780040072.01.T01:three_prime_UTR 30.0%
GTAAGTAACAAGAGAGAATT+GGG + Chr7:72731992-72732011 None:intergenic 30.0%
GTCATTAAGTTACTAGAATG+AGG + Chr7:72732610-72732629 None:intergenic 30.0%
TACTAACCAAATCTTTGCAT+AGG - Chr7:72732678-72732697 MsG0780040072.01.T01:intron 30.0%
TATAGATGAAGGTGGAAATA+AGG - Chr7:72732214-72732233 MsG0780040072.01.T01:CDS 30.0%
TATTGATCATTGCAAAAGCA+AGG + Chr7:72732359-72732378 None:intergenic 30.0%
TGCTTATAATGAAGTCTAGA+GGG - Chr7:72732429-72732448 MsG0780040072.01.T01:CDS 30.0%
TGTAAGTAACAAGAGAGAAT+TGG + Chr7:72731993-72732012 None:intergenic 30.0%
TTGCTTATAATGAAGTCTAG+AGG - Chr7:72732428-72732447 MsG0780040072.01.T01:CDS 30.0%
TTTCTTCTATGAAGGTTTGA+AGG - Chr7:72732941-72732960 MsG0780040072.01.T01:intron 30.0%
! AAGACTTTTATAGATGAAGG+TGG - Chr7:72732206-72732225 MsG0780040072.01.T01:CDS 30.0%
! TTGACAATTTCGTGCTTTTA+TGG - Chr7:72732166-72732185 MsG0780040072.01.T01:CDS 30.0%
!! AAACGAAGTTTCTTTGGTTT+TGG + Chr7:72731914-72731933 None:intergenic 30.0%
!! ACTGCTTTAAAGGTTTAGAT+GGG + Chr7:72731702-72731721 MsG0780040071.01.T01:three_prime_UTR 30.0%
!!! ATAGCTTATTTTACCAGAAC+AGG - Chr7:72733397-72733416 MsG0780040072.01.T01:CDS 30.0%
!!! GAATGAGGGTTTTTTGAATT+CGG + Chr7:72732595-72732614 None:intergenic 30.0%
!!! TCTTTGGTTTTGGATTTTGA+AGG + Chr7:72731904-72731923 None:intergenic 30.0%
AATGGATATGGAGAAGATGA+TGG + Chr7:72731767-72731786 None:intergenic 35.0%
AGGGATAAACGAAGTTTCTT+TGG + Chr7:72731920-72731939 None:intergenic 35.0%
ATGGATATGGAGAAGATGAT+GGG + Chr7:72731766-72731785 None:intergenic 35.0%
CGAATATCAAAACTTTCAGC+AGG + Chr7:72733514-72733533 None:intergenic 35.0%
CTCCTCTGCATAAATATTCA+TGG + Chr7:72733199-72733218 None:intergenic 35.0%
CTCTATGTCTACCCATTATT+TGG - Chr7:72732767-72732786 MsG0780040072.01.T01:intron 35.0%
CTTAATTGGTCATAGCAAAC+TGG + Chr7:72732708-72732727 None:intergenic 35.0%
GGAACTCAAGTTTAGTGAAA+AGG - Chr7:72733343-72733362 MsG0780040072.01.T01:intron 35.0%
GGATGTACTACAAGAATGAA+TGG - Chr7:72733418-72733437 MsG0780040072.01.T01:CDS 35.0%
GGTTTACCAGTTGGATTTAA+CGG + Chr7:72731745-72731764 None:intergenic 35.0%
TAAGAGGCAAAAATAGGAGA+GGG + Chr7:72732873-72732892 None:intergenic 35.0%
TACTCGTAATAACTTTGCAG+TGG - Chr7:72732274-72732293 MsG0780040072.01.T01:intron 35.0%
TGCCATGAATATTTATGCAG+AGG - Chr7:72733194-72733213 MsG0780040072.01.T01:CDS 35.0%
TGGAAATCTGCTTAGCAAAT+AGG + Chr7:72733699-72733718 None:intergenic 35.0%
TGTAATGGTTACTTACGTGA+TGG + Chr7:72732315-72732334 None:intergenic 35.0%
TGTACTACAAGAATGAATGG+AGG - Chr7:72733421-72733440 MsG0780040072.01.T01:CDS 35.0%
TTAAGAGGCAAAAATAGGAG+AGG + Chr7:72732874-72732893 None:intergenic 35.0%
TTGAACAACGATTTCTGACA+AGG + Chr7:72733291-72733310 None:intergenic 35.0%
TTGTCAGAAATCGTTGTTCA+AGG - Chr7:72733290-72733309 MsG0780040072.01.T01:intron 35.0%
! AAGGGCATGGTTTATGTTAA+AGG - Chr7:72733362-72733381 MsG0780040072.01.T01:CDS 35.0%
! GTGATCACAGTTTAAAACCA+TGG + Chr7:72732502-72732521 None:intergenic 35.0%
! TGGTGTTAACATATCGAGTT+AGG - Chr7:72732787-72732806 MsG0780040072.01.T01:intron 35.0%
! TTGTTACTTACAGAGACTAC+TGG - Chr7:72732001-72732020 MsG0780040072.01.T01:three_prime_UTR 35.0%
!! AAAGTTTTGATATTCGCCTC+AGG - Chr7:72733518-72733537 MsG0780040072.01.T01:CDS 35.0%
!! CACTGCTTTAAAGGTTTAGA+TGG + Chr7:72731703-72731722 MsG0780040071.01.T01:three_prime_UTR 35.0%
!! CTGCTTTAAAGGTTTAGATG+GGG + Chr7:72731701-72731720 MsG0780040071.01.T01:three_prime_UTR 35.0%
!! CTTTTTGTTATCTCTGTTCC+TGG - Chr7:72732058-72732077 MsG0780040072.01.T01:exon 35.0%
!!! TTGGTTTTGGATTTTGAAGG+TGG + Chr7:72731901-72731920 None:intergenic 35.0%
AAAGAATGATAGTACCTCCC+CGG + Chr7:72732255-72732274 None:intergenic 40.0%
ACAAGTCGAGCAAATGAGAA+AGG - Chr7:72733322-72733341 MsG0780040072.01.T01:intron 40.0%
ACTCCAACAAACTACACTCA+TGG - Chr7:72731867-72731886 MsG0780040072.01.T01:three_prime_UTR 40.0%
ATGAAGGTTTGAAGGAGTGA+TGG - Chr7:72732949-72732968 MsG0780040072.01.T01:intron 40.0%
ATTATTACCAACATCCGGCA+CGG + Chr7:72733056-72733075 None:intergenic 40.0%
CAAACGTTCTGTCAAATCCA+AGG - Chr7:72732096-72732115 MsG0780040072.01.T01:CDS 40.0%
CAACATGTTCAATGGCTACT+TGG - Chr7:72733611-72733630 MsG0780040072.01.T01:CDS 40.0%
CAAGTTTAGTGAAAAGGGCA+TGG - Chr7:72733349-72733368 MsG0780040072.01.T01:CDS 40.0%
GCAAAAATAGGAGAGGGATA+AGG + Chr7:72732867-72732886 None:intergenic 40.0%
GTTAACCATCTTAAGTCCAC+TGG - Chr7:72733084-72733103 MsG0780040072.01.T01:intron 40.0%
TATGCAGAGGAGCTTATTAC+TGG - Chr7:72733207-72733226 MsG0780040072.01.T01:CDS 40.0%
TCCATTCTCTGCAAAACCAA+TGG - Chr7:72731781-72731800 MsG0780040072.01.T01:three_prime_UTR 40.0%
TCTAGACCGTTAAATCCAAC+TGG - Chr7:72731736-72731755 MsG0780040072.01.T01:three_prime_UTR 40.0%
TCTTGTAGTACATCCTGTTC+TGG + Chr7:72733413-72733432 None:intergenic 40.0%
TGTTGCAATTGTTGATACCG+TGG - Chr7:72732527-72732546 MsG0780040072.01.T01:intron 40.0%
TTAGCAAATAGGCGTGCTAT+TGG + Chr7:72733688-72733707 None:intergenic 40.0%
! AGAGACTACTGGTTACTCTT+TGG - Chr7:72732012-72732031 MsG0780040072.01.T01:three_prime_UTR 40.0%
! GGTTTTGCAGAGAATGGATA+TGG + Chr7:72731779-72731798 None:intergenic 40.0%
! TTATCTCTGTTCCTGGTCTT+TGG - Chr7:72732065-72732084 MsG0780040072.01.T01:CDS 40.0%
! TTCTCATTTGCTCGACTTGT+TGG + Chr7:72733322-72733341 None:intergenic 40.0%
!! AACTTTGCAGTGGTTGATAG+AGG - Chr7:72732284-72732303 MsG0780040072.01.T01:intron 40.0%
!! AAGATGATGGGTTTACCAGT+TGG + Chr7:72731754-72731773 None:intergenic 40.0%
!! CACTTTAACTTGCTCCTTTC+TGG + Chr7:72733243-72733262 None:intergenic 40.0%
!! GTTTTGGATTTTGAAGGTGG+TGG + Chr7:72731898-72731917 None:intergenic 40.0%
!! TGCCGGATGTTGGTAATAAT+TGG - Chr7:72733056-72733075 MsG0780040072.01.T01:intron 40.0%
!! TGTAGTTTGTTGGAGTGAAG+TGG + Chr7:72731863-72731882 None:intergenic 40.0%
!!! GGGAGTACCATTTTAAGCAT+TGG - Chr7:72732449-72732468 MsG0780040072.01.T01:CDS 40.0%
ACCGTGGACATAAGCATTTG+TGG - Chr7:72732543-72732562 MsG0780040072.01.T01:intron 45.0%
ATATGCCTGTGTTTAGCCAG+TGG + Chr7:72733464-72733483 None:intergenic 45.0%
CATACACAAAAAGCAGCCAC+TGG - Chr7:72733445-72733464 MsG0780040072.01.T01:CDS 45.0%
GAATTCAGCACTCTCGTGAA+GGG + Chr7:72731939-72731958 None:intergenic 45.0%
GCCACAAATGCTTATGTCCA+CGG + Chr7:72732547-72732566 None:intergenic 45.0%
GGAGCTCCTATGCAAAGATT+TGG + Chr7:72732687-72732706 None:intergenic 45.0%
TAAAGTGAACTAGGTGCCTG+AGG + Chr7:72733537-72733556 None:intergenic 45.0%
TGAATTCAGCACTCTCGTGA+AGG + Chr7:72731940-72731959 None:intergenic 45.0%
TGGAGTGAAGTGGAAGAGAA+CGG + Chr7:72731853-72731872 None:intergenic 45.0%
TTGATGAGAGACCAAAGACC+AGG + Chr7:72732079-72732098 None:intergenic 45.0%
! CTGCCATGAGTGTAGTTTGT+TGG + Chr7:72731873-72731892 None:intergenic 45.0%
! TTACGCCAGTGGACTTAAGA+TGG + Chr7:72733092-72733111 None:intergenic 45.0%
!!! GCCATTGGTTTTGCAGAGAA+TGG + Chr7:72731785-72731804 None:intergenic 45.0%
AAGTCCACTGGCGTAAGTGA+AGG - Chr7:72733096-72733115 MsG0780040072.01.T01:intron 50.0%
AATGCCTTCACTTACGCCAG+TGG + Chr7:72733103-72733122 None:intergenic 50.0%
AGCATCATCTTGGCAGCCAT+TGG + Chr7:72731800-72731819 None:intergenic 50.0%
CACGGTTATGGTGAGCACAA+GGG + Chr7:72733038-72733057 None:intergenic 50.0%
GAAGTGGAAGAGAACGGAGA+GGG + Chr7:72731847-72731866 None:intergenic 50.0%
TGAAGTGGAAGAGAACGGAG+AGG + Chr7:72731848-72731867 None:intergenic 50.0%
TGGGGACAACAGCATCATCT+TGG + Chr7:72731810-72731829 None:intergenic 50.0%
TTTCTGCACTTGCATCAGCC+TGG - Chr7:72733003-72733022 MsG0780040072.01.T01:intron 50.0%
! AAGGCACCAAGTCAAGTTGC+CGG - Chr7:72732233-72732252 MsG0780040072.01.T01:intron 50.0%
AAGGAGTGATGGTTCCCAGC+AGG - Chr7:72732960-72732979 MsG0780040072.01.T01:intron 55.0%
ACCAACATCCGGCACGGTTA+TGG + Chr7:72733050-72733069 None:intergenic 55.0%
ACCATAACCGTGCCGGATGT+TGG - Chr7:72733046-72733065 MsG0780040072.01.T01:intron 55.0%
AGAGGGAGATGGTGTGGATG+TGG + Chr7:72731830-72731849 None:intergenic 55.0%
AGGAGTGATGGTTCCCAGCA+GGG - Chr7:72732961-72732980 MsG0780040072.01.T01:intron 55.0%
AGGGAGATGGTGTGGATGTG+GGG + Chr7:72731828-72731847 None:intergenic 55.0%
CTGGACTCGAGCATCCAGAA+AGG - Chr7:72733226-72733245 MsG0780040072.01.T01:CDS 55.0%
GAAGAGAACGGAGAGGGAGA+TGG + Chr7:72731841-72731860 None:intergenic 55.0%
GAGGGAGATGGTGTGGATGT+GGG + Chr7:72731829-72731848 None:intergenic 55.0%
GCACAAGGGAAACACTTGCC+AGG + Chr7:72733024-72733043 None:intergenic 55.0%
GCACGGTTATGGTGAGCACA+AGG + Chr7:72733039-72733058 None:intergenic 55.0%
TGTGCTCACCATAACCGTGC+CGG - Chr7:72733039-72733058 MsG0780040072.01.T01:intron 55.0%
! AGCAGCCACTGGCTAAACAC+AGG - Chr7:72733456-72733475 MsG0780040072.01.T01:CDS 55.0%
! AGGCACCAAGTCAAGTTGCC+GGG - Chr7:72732234-72732253 MsG0780040072.01.T01:intron 55.0%
ACCTCCCCGGCAACTTGACT+TGG + Chr7:72732242-72732261 None:intergenic 60.0%
GAACGGAGAGGGAGATGGTG+TGG + Chr7:72731836-72731855 None:intergenic 60.0%
GAGTGATGGTTCCCAGCAGG+GGG - Chr7:72732963-72732982 MsG0780040072.01.T01:intron 60.0%
GGAGTGATGGTTCCCAGCAG+GGG - Chr7:72732962-72732981 MsG0780040072.01.T01:intron 60.0%
! ACCAAGTCAAGTTGCCGGGG+AGG - Chr7:72732238-72732257 MsG0780040072.01.T01:intron 60.0%
! GGCACCAAGTCAAGTTGCCG+GGG - Chr7:72732235-72732254 MsG0780040072.01.T01:intron 60.0%
!! AGTGCTGCTTGCCCCCTGCT+GGG + Chr7:72732977-72732996 None:intergenic 65.0%
!! CAGTGCTGCTTGCCCCCTGC+TGG + Chr7:72732978-72732997 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 72731700 72733763 72731700 ID=MsG0780040072.01;Name=MsG0780040072.01
Chr7 mRNA 72731700 72733763 72731700 ID=MsG0780040072.01.T01;Parent=MsG0780040072.01;Name=MsG0780040072.01.T01;_AED=0.34;_eAED=0.34;_QI=100|1|1|1|1|1|4|363|259
Chr7 exon 72731700 72732249 72731700 ID=MsG0780040072.01.T01:exon:12953;Parent=MsG0780040072.01.T01
Chr7 exon 72732356 72732508 72732356 ID=MsG0780040072.01.T01:exon:12952;Parent=MsG0780040072.01.T01
Chr7 exon 72733145 72733266 72733145 ID=MsG0780040072.01.T01:exon:12951;Parent=MsG0780040072.01.T01
Chr7 exon 72733346 72733763 72733346 ID=MsG0780040072.01.T01:exon:12950;Parent=MsG0780040072.01.T01
Chr7 five_prime_UTR 72733664 72733763 72733664 ID=MsG0780040072.01.T01:five_prime_utr;Parent=MsG0780040072.01.T01
Chr7 CDS 72733346 72733663 72733346 ID=MsG0780040072.01.T01:cds;Parent=MsG0780040072.01.T01
Chr7 CDS 72733145 72733266 72733145 ID=MsG0780040072.01.T01:cds;Parent=MsG0780040072.01.T01
Chr7 CDS 72732356 72732508 72732356 ID=MsG0780040072.01.T01:cds;Parent=MsG0780040072.01.T01
Chr7 CDS 72732063 72732249 72732063 ID=MsG0780040072.01.T01:cds;Parent=MsG0780040072.01.T01
Chr7 three_prime_UTR 72731700 72732062 72731700 ID=MsG0780040072.01.T01:three_prime_utr;Parent=MsG0780040072.01.T01
Gene Sequence

>MsG0780040072.01.T01

ATGGCTGCCAAGATGATGCTGTTGTCCCCACATCCACACCATCTCCCTCTCCGTTCTCTTCCACTTCACTCCAACAAACTACACTCATGGCAGCACCACCACCTTCAAAATCCAAAACCAAAGAAACTTCGTTTATCCCTTCACGAGAGTGCTGAATTCATCACACAAAACCAACAACAAATATTAAATCCCAATTCTCTCTTGTTACTTACAGAGACTACTGGTTACTCTTTGGCTAGTTATTATACTTCTCTTGGTCTTTTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGATTGTGAAGAAGACTTTTATAGATGAAGGTGGAAATAAGGCACCAAGTCAAGTTGCCGGGGAGGTACTATCATTCTTTACTCGTAATAACTTTGCAGTGGTTGATAGAGGAGAAACCATCACGTTTGAAGGAGTGATGGTTCCCAGCAGGGGGCAAGCAGCACTGTTAACTTTCTGCACTTGCATCAGCCTGGCAAGTGTTTCCCTTGTGCTCACCATAACCGTGCCGGATGTTGGTAATAATTGGTTTTGGTTAACCATCTTAAGTCCACTGGCAGGAGCTTATTACTGGACTCGAGCATCCAGAAAGGAGCAAGTTAAAGTGAAAATGATAGTTAAAGAAGATGGAACCTTGTCAGAAATCGTTGTTCAAGGTGACGACCAACAAGTCGAGCAAATGAGAAAGGAACTCAAGTTTAGTGAAAAGGGCATGGTTTATGTTAAAGGCCTTTTCGAAACATAG

Protein sequence

>MsG0780040072.01.T01

MAAKMMLLSPHPHHLPLRSLPLHSNKLHSWQHHHLQNPKPKKLRLSLHESAEFITQNQQQILNPNSLLLLTETTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIDEGGNKAPSQVAGEVLSFFTRNNFAVVDRGETITFEGVMVPSRGQAALLTFCTCISLASVSLVLTITVPDVGNNWFWLTILSPLAGAYYWTRASRKEQVKVKMIVKEDGTLSEIVVQGDDQQVEQMRKELKFSEKGMVYVKGLFET*