AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024135.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024135.01.T01 MTR_5g006230 94.656 393 13 3 1 392 1 386 0.0 753
MsG0580024135.01.T01 MTR_5g006230 99.270 274 2 0 119 392 1 274 0.0 559
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024135.01.T01 AT5G16810 68.293 369 101 6 37 391 52 418 1.51e-178 503
MsG0580024135.01.T01 AT5G16810 66.571 350 101 6 37 372 52 399 7.41e-163 463

Find 102 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTAGTACATTGTTTAA+AGG 0.200052 5:-1256859 None:intergenic
AGTTAATGCCATCGAATTCT+TGG 0.263331 5:+1256136 MsG0580024135.01.T01:CDS
GACCACTTACAGAAGGTCTT+TGG 0.271166 5:+1254177 MsG0580024135.01.T01:CDS
TTTCATTATAAAGCTTCTTC+AGG 0.285731 5:+1252843 MsG0580024135.01.T01:CDS
TATCTAGAGAAACGAGCTTT+TGG 0.296802 5:+1254230 MsG0580024135.01.T01:CDS
ATTACACCAGCTTCACAAAA+TGG 0.318038 5:-1254394 None:intergenic
TCAGGGTGCTTTGAGAGGTT+TGG 0.329693 5:+1252861 MsG0580024135.01.T01:CDS
CTAAGTCTTGGAATCAAATA+AGG 0.340376 5:-1253069 None:intergenic
TGCTGGTTGGGAGTTGCTTC+AGG 0.341903 5:+1256172 MsG0580024135.01.T01:CDS
ACCCCACCAGCTCGTGTTCC+GGG 0.371480 5:-1252397 None:intergenic
GGTCGACCCATTGGCAACTA+TGG 0.371782 5:+1251338 MsG0580024135.01.T01:CDS
CTTATTTGATTCCAAGACTT+AGG 0.379698 5:+1253070 MsG0580024135.01.T01:CDS
AACCCCACCAGCTCGTGTTC+CGG 0.404587 5:-1252398 None:intergenic
GTACTCGGAACTAGAAGATT+CGG 0.411516 5:+1254154 MsG0580024135.01.T01:CDS
ACCACTTACAGAAGGTCTTT+GGG 0.419296 5:+1254178 MsG0580024135.01.T01:CDS
AGGTATCAAAACTGTCTTCA+TGG 0.420473 5:+1252779 MsG0580024135.01.T01:CDS
GTGGAGGTTAAGATGAAAGC+AGG 0.431813 5:-1251224 None:intergenic
AAATTTGAGAGTGGATTTAG+TGG 0.435915 5:-1251243 None:intergenic
TTATTTGATTCCAAGACTTA+GGG 0.437676 5:+1253071 MsG0580024135.01.T01:CDS
TACTTGAGAGATACAGAAAA+TGG 0.439660 5:-1252925 None:intergenic
TCTAGGCGATGGTGCTGGTT+GGG 0.447704 5:+1256160 MsG0580024135.01.T01:CDS
TTCATTATAAAGCTTCTTCA+GGG 0.455313 5:+1252844 MsG0580024135.01.T01:CDS
CAGAAAATGGTCCAAGACTC+TGG 0.456172 5:-1252912 None:intergenic
TATTTGCCTAGTTAATATAC+AGG 0.461572 5:+1256797 MsG0580024135.01.T01:three_prime_UTR
AAACACATCAAACCTACAAA+AGG 0.463844 5:-1256827 None:intergenic
CTCAATCACCGGTTTATGAC+CGG 0.465096 5:+1256595 MsG0580024135.01.T01:CDS
TTATGAAGGCAGAGTTTCCC+AGG 0.466570 5:+1251528 MsG0580024135.01.T01:CDS
GGTGGGTTTGAAACAACTAC+TGG 0.470427 5:+1252586 MsG0580024135.01.T01:CDS
TGTCTTGAATTTGCACTGCT+TGG 0.472814 5:+1256733 MsG0580024135.01.T01:three_prime_UTR
TACTCGGAACTAGAAGATTC+GGG 0.476657 5:+1254155 MsG0580024135.01.T01:CDS
GCAACACCCATGCTTGTAAA+CGG 0.477994 5:-1251185 None:intergenic
GCCCAAAGACCTTCTGTAAG+TGG 0.488478 5:-1254179 None:intergenic
CGGAGGCTGTTCTCAATCAC+CGG 0.494235 5:+1256584 MsG0580024135.01.T01:CDS
ATCTAGGCGATGGTGCTGGT+TGG 0.494792 5:+1256159 MsG0580024135.01.T01:CDS
GGACTTCTCCGGTCATAAAC+CGG 0.497147 5:-1256603 None:intergenic
ACTTTATCACAAACTCGGAT+TGG 0.497439 5:+1251306 MsG0580024135.01.T01:CDS
TGATTATCCGTTTACAAGCA+TGG 0.497476 5:+1251178 MsG0580024135.01.T01:exon
TGAAATTCAAAGGACTTCTC+CGG 0.498130 5:-1256614 None:intergenic
TGCCAATGGGTCGACCCACT+TGG 0.500220 5:-1251331 None:intergenic
CTTCTTCAGGGTGCTTTGAG+AGG 0.501298 5:+1252856 MsG0580024135.01.T01:CDS
AAGGCCAAGTCCCTAAGTCT+TGG 0.505677 5:-1253081 None:intergenic
TACTTCCAGAGCAGTTCTAA+AGG 0.508594 5:+1252535 MsG0580024135.01.T01:intron
TTCCAAGTGGGTCGACCCAT+TGG 0.509630 5:+1251329 MsG0580024135.01.T01:CDS
GCCATCGAATTCTTGGATCT+AGG 0.511348 5:+1256143 MsG0580024135.01.T01:CDS
TGAGTTACAATGCAGATATG+AGG 0.512025 5:+1254339 MsG0580024135.01.T01:intron
TCCCGGAACACGAGCTGGTG+GGG 0.514552 5:+1252396 MsG0580024135.01.T01:CDS
GATTCCAAGACTTAGGGACT+TGG 0.521047 5:+1253077 MsG0580024135.01.T01:CDS
GATAGATTACACCAGAGTCT+TGG 0.524389 5:+1252901 MsG0580024135.01.T01:CDS
TTACCTGACACTAACAGAAA+AGG 0.524628 5:-1253100 None:intergenic
AAGAAGGCAGCGTTAAGATC+AGG 0.525969 5:+1251432 MsG0580024135.01.T01:CDS
AAGATGAAAGCAGGAAGAAG+AGG 0.526166 5:-1251215 None:intergenic
CTTCAACTTTATCACAAACT+CGG 0.529481 5:+1251301 MsG0580024135.01.T01:CDS
GATCAATATTCACTTGGTGG+TGG 0.529898 5:+1251389 MsG0580024135.01.T01:CDS
GGCAGCACAGCTTACTTGCA+AGG 0.536066 5:-1254428 None:intergenic
ATCTCACTTGAAGGAACATG+TGG 0.539130 5:-1252456 None:intergenic
TTGGATCTAGGCGATGGTGC+TGG 0.542634 5:+1256155 MsG0580024135.01.T01:CDS
TTGCAGTGCAGGCTTTATGA+AGG 0.544158 5:+1251514 MsG0580024135.01.T01:intron
TGAAACAACTACTGGAGAGC+AGG 0.548387 5:+1252594 MsG0580024135.01.T01:CDS
ACTGATCAATATTCACTTGG+TGG 0.549006 5:+1251386 MsG0580024135.01.T01:CDS
CACAGCTTACTTGCAAGGAA+AGG 0.551161 5:-1254423 None:intergenic
AGTTGGTCTCTTTCGAAAGT+CGG 0.551790 5:-1256560 None:intergenic
ATGAAGCCATAGTTGCCAAT+GGG 0.553447 5:-1251344 None:intergenic
TTGTGGCCTGTATATTAACT+AGG 0.553628 5:-1256803 None:intergenic
TTTCAATTATTTCAGGTACT+CGG 0.556243 5:+1254139 MsG0580024135.01.T01:intron
GATTATCCGTTTACAAGCAT+GGG 0.557525 5:+1251179 MsG0580024135.01.T01:exon
CATGAAGCCATAGTTGCCAA+TGG 0.557841 5:-1251345 None:intergenic
AATTATAATGATAATAGTAA+TGG 0.560663 5:+1251278 MsG0580024135.01.T01:CDS
AGAACGGGAGTTTGTCTAAG+TGG 0.560791 5:-1251553 None:intergenic
GTTTATCCCGGAACACGAGC+TGG 0.561221 5:+1252391 MsG0580024135.01.T01:CDS
ATCCCGGAACACGAGCTGGT+GGG 0.565244 5:+1252395 MsG0580024135.01.T01:CDS
TATCCCGGAACACGAGCTGG+TGG 0.567710 5:+1252394 MsG0580024135.01.T01:CDS
AAAACTCAAGATGTTCAAGA+AGG 0.570944 5:+1251416 MsG0580024135.01.T01:CDS
TTAACAATGAAGGTTTATCC+CGG 0.577939 5:+1252379 MsG0580024135.01.T01:intron
GAGTTTGTCTAAGTGGACCC+TGG 0.579200 5:-1251546 None:intergenic
AGTTTGTCTAAGTGGACCCT+GGG 0.579559 5:-1251545 None:intergenic
TTGAGAACAGCCTCCGCAGT+TGG 0.579792 5:-1256577 None:intergenic
TTACAATGCAGATATGAGGC+AGG 0.580377 5:+1254343 MsG0580024135.01.T01:intron
AGTACTGATCAATATTCACT+TGG 0.590757 5:+1251383 MsG0580024135.01.T01:CDS
TTTGAGAGTGGATTTAGTGG+AGG 0.594256 5:-1251240 None:intergenic
TGGGGTTGTAGCAGATATGA+TGG 0.598189 5:+1252414 MsG0580024135.01.T01:CDS
GAATTCTTGGATCTAGGCGA+TGG 0.601359 5:+1256149 MsG0580024135.01.T01:CDS
AACTCGGATTGGTTCCAAGT+GGG 0.614601 5:+1251317 MsG0580024135.01.T01:CDS
TGTGAAGCTGGTGTAATGGA+TGG 0.616877 5:+1254400 MsG0580024135.01.T01:CDS
TCAGACAACTCACATGTCAT+CGG 0.623893 5:-1254258 None:intergenic
GTGCATTGTGGATAATGGAG+TGG 0.636211 5:+1251154 None:intergenic
TTTAACTTGAAATTTGAGAG+TGG 0.636797 5:-1251252 None:intergenic
GCCTAGATCCAAGAATTCGA+TGG 0.637024 5:-1256144 None:intergenic
TGCAAAAGTTGCGAGTGAGA+AGG 0.637981 5:+1252759 MsG0580024135.01.T01:CDS
TCGAAAGAGACCAACTGCGG+AGG 0.640717 5:+1256567 MsG0580024135.01.T01:CDS
TGCATTGTGGATAATGGAGT+GGG 0.641968 5:+1251155 None:intergenic
TCAAACCTACAAAAGGATTG+TGG 0.642267 5:-1256820 None:intergenic
TATGAAGGCAGAGTTTCCCA+GGG 0.644272 5:+1251529 MsG0580024135.01.T01:CDS
TTTATGAAATATATCAACCA+CGG 0.654061 5:+1256659 MsG0580024135.01.T01:three_prime_UTR
GATTCGGGACCACTTACAGA+AGG 0.658028 5:+1254170 MsG0580024135.01.T01:CDS
ATATTTACAGAAAACATGAA+CGG 0.681624 5:-1256691 None:intergenic
TACAGAAAACATGAACGGTG+TGG 0.697578 5:-1256686 None:intergenic
AAACTCGGATTGGTTCCAAG+TGG 0.701486 5:+1251316 MsG0580024135.01.T01:CDS
TCTCACTTGAAGGAACATGT+GGG 0.704718 5:-1252455 None:intergenic
TCATGGAATAGCTTTGAACG+AGG 0.717104 5:+1252796 MsG0580024135.01.T01:CDS
GTGTTGCTTCAAGATCAAGT+CGG 0.746521 5:-1254578 None:intergenic
ATGAACGGTGTGGTAAGCCG+TGG 0.756936 5:-1256676 None:intergenic
CTTTCGAAAGAGACCAACTG+CGG 0.761491 5:+1256564 MsG0580024135.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAATGAATAATATCA+TGG - Chr5:1251814-1251833 None:intergenic 10.0%
!! AATTAAATGAATAATATCAT+GGG - Chr5:1251813-1251832 None:intergenic 10.0%
!! AATTATAATGATAATAGTAA+TGG + Chr5:1251278-1251297 MsG0580024135.01.T01:CDS 10.0%
!! ATTATAACATAAATAATGTT+AGG + Chr5:1253964-1253983 MsG0580024135.01.T01:intron 10.0%
!!! ATTTCAAGTTTTAAAAAATA+TGG + Chr5:1256631-1256650 MsG0580024135.01.T01:three_prime_UTR 10.0%
!! ATACAAGTTTCATATATATA+TGG + Chr5:1253183-1253202 MsG0580024135.01.T01:intron 15.0%
!! ATACTTACGTTTAATTATTA+GGG + Chr5:1256052-1256071 MsG0580024135.01.T01:intron 15.0%
!!! ATATTCTTTTTTCAGAAAAA+AGG - Chr5:1253241-1253260 None:intergenic 15.0%
!!! TAAACATTTTGTAATTTGTT+TGG - Chr5:1251745-1251764 None:intergenic 15.0%
!!! TATACTTTCTTTTTGTATTT+TGG - Chr5:1255958-1255977 None:intergenic 15.0%
!!! TTTTAAAACTTGAAATTCAA+AGG - Chr5:1256627-1256646 None:intergenic 15.0%
!! AAACTAGTTGAAAATAGTAT+AGG + Chr5:1254930-1254949 MsG0580024135.01.T01:intron 20.0%
!! AATAAAAGAAAAGTTTGTCT+TGG - Chr5:1252102-1252121 None:intergenic 20.0%
!! AATTTACATAGTATTGTGAA+TGG + Chr5:1255894-1255913 MsG0580024135.01.T01:intron 20.0%
!! ACTTGTTTAAATGCATAATT+TGG - Chr5:1251987-1252006 None:intergenic 20.0%
!! ATATTTACAGAAAACATGAA+CGG - Chr5:1256694-1256713 None:intergenic 20.0%
!! ATCATTAATTAGTATGAGAA+TGG - Chr5:1251480-1251499 None:intergenic 20.0%
!! ATGATATAGATTGAACATTA+TGG + Chr5:1253682-1253701 MsG0580024135.01.T01:intron 20.0%
!! ATTAAAGAAAATGTTTACGT+TGG - Chr5:1256346-1256365 None:intergenic 20.0%
!! ATTAATTTCTATGTTGTGTT+TGG - Chr5:1255221-1255240 None:intergenic 20.0%
!! ATTCTTAATCAAATGTCTTA+AGG - Chr5:1252012-1252031 None:intergenic 20.0%
!! GAAACACCTTTATATTTAAA+AGG + Chr5:1255532-1255551 MsG0580024135.01.T01:intron 20.0%
!! GAAATAAGATCATCAATATA+TGG - Chr5:1254123-1254142 None:intergenic 20.0%
!! GATACTTACGTTTAATTATT+AGG + Chr5:1256051-1256070 MsG0580024135.01.T01:intron 20.0%
!! GATGTATTACTATTATCAAA+TGG + Chr5:1251786-1251805 MsG0580024135.01.T01:intron 20.0%
!! TATCCAACTCATTAATATTT+AGG - Chr5:1253657-1253676 None:intergenic 20.0%
!! TGTATCTAATATAAAAATCC+TGG + Chr5:1255253-1255272 MsG0580024135.01.T01:intron 20.0%
!! TTTATGAAATATATCAACCA+CGG + Chr5:1256659-1256678 MsG0580024135.01.T01:three_prime_UTR 20.0%
!!! AAAAAGTATCACTAAAAAAG+TGG - Chr5:1253811-1253830 None:intergenic 20.0%
!!! ATACTTTATTGATTATAGCT+AGG + Chr5:1255277-1255296 MsG0580024135.01.T01:intron 20.0%
!!! ATGCATTATTTACATTTTCA+TGG - Chr5:1256399-1256418 None:intergenic 20.0%
!!! ATGTTTTGGTTCATAAAAAA+TGG + Chr5:1256430-1256449 MsG0580024135.01.T01:intron 20.0%
!!! ATTATCACTTTTAACAATGA+AGG + Chr5:1252369-1252388 MsG0580024135.01.T01:intron 20.0%
!!! ATTTTGGAATATTAACATTG+AGG + Chr5:1251935-1251954 MsG0580024135.01.T01:intron 20.0%
!!! CTGTAAATATTCCATTTTTT+GGG + Chr5:1256704-1256723 MsG0580024135.01.T01:three_prime_UTR 20.0%
!!! CTTATTTTGCAGTTTATTTA+TGG - Chr5:1251712-1251731 None:intergenic 20.0%
!!! GATCTTATTTCAATTATTTC+AGG + Chr5:1254132-1254151 MsG0580024135.01.T01:intron 20.0%
!!! TATCTTTTAGTCTATATTTC+TGG + Chr5:1254611-1254630 MsG0580024135.01.T01:intron 20.0%
!!! TCTGTAAATATTCCATTTTT+TGG + Chr5:1256703-1256722 MsG0580024135.01.T01:three_prime_UTR 20.0%
!!! TTATTTACATTTTCATGGTT+TGG - Chr5:1256394-1256413 None:intergenic 20.0%
!!! TTCTAAAATAGCTTATAGAA+AGG + Chr5:1256305-1256324 MsG0580024135.01.T01:intron 20.0%
!!! TTGTATAATATAGTTTTCCT+TGG + Chr5:1254832-1254851 MsG0580024135.01.T01:intron 20.0%
!!! TTTCTATAAGCTATTTTAGA+AGG - Chr5:1256306-1256325 None:intergenic 20.0%
!!! TTTGATAATAGTAATACATC+TGG - Chr5:1251786-1251805 None:intergenic 20.0%
! AATAACACTATGAACTGATA+TGG - Chr5:1252495-1252514 None:intergenic 25.0%
! ACACCTAAATATTAATGAGT+TGG + Chr5:1253651-1253670 MsG0580024135.01.T01:intron 25.0%
! AGACATATATTCCCAAAAAA+TGG - Chr5:1256718-1256737 None:intergenic 25.0%
! AGCTTATTATATTCTTGTGT+TGG - Chr5:1253380-1253399 None:intergenic 25.0%
! ATATTAGATGAGATAGGATT+AGG + Chr5:1253435-1253454 MsG0580024135.01.T01:intron 25.0%
! ATTAAAACTATCTCACTTGA+AGG - Chr5:1252468-1252487 None:intergenic 25.0%
! ATTACAAGTAAGCATGTTAA+TGG - Chr5:1253017-1253036 None:intergenic 25.0%
! GGAAAGGCTTATATATAATA+GGG - Chr5:1252165-1252184 None:intergenic 25.0%
! GTAAAATAGAACAGCAAAAA+AGG - Chr5:1255132-1255151 None:intergenic 25.0%
! TAAGAATTACAACTTCAAAC+TGG + Chr5:1254081-1254100 MsG0580024135.01.T01:intron 25.0%
! TAGTAAGAAGAGAAATCAAA+CGG + Chr5:1253998-1254017 MsG0580024135.01.T01:intron 25.0%
! TAGTTGAAAATAGTATAGGA+TGG + Chr5:1254934-1254953 MsG0580024135.01.T01:intron 25.0%
! TATAATCAATAAAGTATGCC+AGG - Chr5:1255274-1255293 None:intergenic 25.0%
! TATTTGCCTAGTTAATATAC+AGG + Chr5:1256797-1256816 MsG0580024135.01.T01:three_prime_UTR 25.0%
! TTATTTGATTCCAAGACTTA+GGG + Chr5:1253071-1253090 MsG0580024135.01.T01:CDS 25.0%
! TTCATTATAAAGCTTCTTCA+GGG + Chr5:1252844-1252863 MsG0580024135.01.T01:CDS 25.0%
! TTCTTATTGTTAACCAATCA+TGG - Chr5:1254067-1254086 None:intergenic 25.0%
! TTTATACCATTACCATGTAT+AGG - Chr5:1255658-1255677 None:intergenic 25.0%
! TTTCATTATAAAGCTTCTTC+AGG + Chr5:1252843-1252862 MsG0580024135.01.T01:CDS 25.0%
!! AATATTCTGAAAACTAGGTT+AGG + Chr5:1253503-1253522 MsG0580024135.01.T01:intron 25.0%
!! ACTATGTAAATTGATTCACT+AGG - Chr5:1255886-1255905 None:intergenic 25.0%
!! CTATGTAAATTGATTCACTA+GGG - Chr5:1255885-1255904 None:intergenic 25.0%
!! GAGAAAATATTCTGAAAACT+AGG + Chr5:1253498-1253517 MsG0580024135.01.T01:intron 25.0%
!! TGCAATTTCAACTATCATTT+TGG + Chr5:1251919-1251938 MsG0580024135.01.T01:intron 25.0%
!! TTATTGGTTGAAATTCATCT+GGG + Chr5:1254673-1254692 MsG0580024135.01.T01:intron 25.0%
!! TTGATCTACTATGTTCTTTT+AGG + Chr5:1255064-1255083 MsG0580024135.01.T01:intron 25.0%
!! TTTATTGGTTGAAATTCATC+TGG + Chr5:1254672-1254691 MsG0580024135.01.T01:intron 25.0%
!! TTTCAATTATTTCAGGTACT+CGG + Chr5:1254139-1254158 MsG0580024135.01.T01:intron 25.0%
!!! AAGCTTATTTTCAAATTGAG+AGG - Chr5:1252625-1252644 None:intergenic 25.0%
!!! AATTTGGTTTTTGAGATTGT+AGG - Chr5:1251971-1251990 None:intergenic 25.0%
!!! ACTATTTTCAACTAGTTTAC+AGG - Chr5:1254928-1254947 None:intergenic 25.0%
!!! ATCTTATGTTACTTTTAGGT+GGG + Chr5:1252569-1252588 MsG0580024135.01.T01:CDS 25.0%
!!! ATTTGGTTTTTGAGATTGTA+GGG - Chr5:1251970-1251989 None:intergenic 25.0%
!!! GTTTCTCTTACAGTTTTTTT+AGG - Chr5:1253622-1253641 None:intergenic 25.0%
!!! TTTAACTTGAAATTTGAGAG+TGG - Chr5:1251255-1251274 None:intergenic 25.0%
AAAACTCAAGATGTTCAAGA+AGG + Chr5:1251416-1251435 MsG0580024135.01.T01:CDS 30.0%
AAACAAACCTGATCACAAAT+TGG + Chr5:1254980-1254999 MsG0580024135.01.T01:intron 30.0%
AAACAAATAGCTTAGAGACT+TGG + Chr5:1254895-1254914 MsG0580024135.01.T01:intron 30.0%
AAACACATCAAACCTACAAA+AGG - Chr5:1256830-1256849 None:intergenic 30.0%
AAATAGAACAGCAAAAAAGG+TGG - Chr5:1255129-1255148 None:intergenic 30.0%
AACAAACCTGATCACAAATT+GGG + Chr5:1254981-1255000 MsG0580024135.01.T01:intron 30.0%
AACAAATAGCTTAGAGACTT+GGG + Chr5:1254896-1254915 MsG0580024135.01.T01:intron 30.0%
AACAGTTGTAAAAGATGTAG+GGG - Chr5:1252233-1252252 None:intergenic 30.0%
AACATAATTAACAGAGTTGG+AGG - Chr5:1252674-1252693 None:intergenic 30.0%
AATAGATACTGTATTTAGCG+AGG + Chr5:1253860-1253879 MsG0580024135.01.T01:intron 30.0%
AATTACAACTTCAAACTGGT+TGG + Chr5:1254085-1254104 MsG0580024135.01.T01:intron 30.0%
ACAACAGTTGTAAAAGATGT+AGG - Chr5:1252235-1252254 None:intergenic 30.0%
ATAGTAATACATCTGGATCA+AGG - Chr5:1251779-1251798 None:intergenic 30.0%
ATATACCATGCATAGGAAAT+AGG - Chr5:1255825-1255844 None:intergenic 30.0%
ATCACTAAAAAAGTGGCATA+TGG - Chr5:1253804-1253823 None:intergenic 30.0%
ATTATATATAAGCCTTTCCC+TGG + Chr5:1252166-1252185 MsG0580024135.01.T01:intron 30.0%
ATTTCTATGTTGTGTTTGGT+AGG - Chr5:1255217-1255236 None:intergenic 30.0%
CAAAATGTTATGTTCCATTG+AGG + Chr5:1252328-1252347 MsG0580024135.01.T01:intron 30.0%
CAACAGTTGTAAAAGATGTA+GGG - Chr5:1252234-1252253 None:intergenic 30.0%
CAGAAATGAAAAAGTTGTGT+TGG + Chr5:1253402-1253421 MsG0580024135.01.T01:intron 30.0%
CATGCTTACTTGTAATATGA+TGG + Chr5:1253021-1253040 MsG0580024135.01.T01:intron 30.0%
CATTACCATGTATAGGAAAT+AGG - Chr5:1255651-1255670 None:intergenic 30.0%
CTAAAAGTCTCTGAATTTCA+TGG - Chr5:1254548-1254567 None:intergenic 30.0%
CTAAGTCTTGGAATCAAATA+AGG - Chr5:1253072-1253091 None:intergenic 30.0%
CTATTTCCTATACATGGTAA+TGG + Chr5:1255649-1255668 MsG0580024135.01.T01:intron 30.0%
CTGTATATATCAAATGCTCA+TGG + Chr5:1256504-1256523 MsG0580024135.01.T01:intron 30.0%
CTTATTTGATTCCAAGACTT+AGG + Chr5:1253070-1253089 MsG0580024135.01.T01:CDS 30.0%
CTTCAACTTTATCACAAACT+CGG + Chr5:1251301-1251320 MsG0580024135.01.T01:CDS 30.0%
GACTAATATATACCATGCAT+AGG - Chr5:1255832-1255851 None:intergenic 30.0%
GAGATATTTATTCGATTCAG+TGG + Chr5:1252695-1252714 MsG0580024135.01.T01:intron 30.0%
GGGAAAGGCTTATATATAAT+AGG - Chr5:1252166-1252185 None:intergenic 30.0%
GGTTGAGGTATACTTATTAT+GGG + Chr5:1254853-1254872 MsG0580024135.01.T01:intron 30.0%
GTGATCAGTGTATTGAAATT+AGG - Chr5:1253161-1253180 None:intergenic 30.0%
GTGGTAATATTAGATGAGAT+AGG + Chr5:1253429-1253448 MsG0580024135.01.T01:intron 30.0%
TAAGACCATTTATGTTGTGT+GGG + Chr5:1253332-1253351 MsG0580024135.01.T01:intron 30.0%
TAATAAGTATACCTCAACCA+AGG - Chr5:1254852-1254871 None:intergenic 30.0%
TACTTGAGAGATACAGAAAA+TGG - Chr5:1252928-1252947 None:intergenic 30.0%
TAGTAATACATCTGGATCAA+GGG - Chr5:1251778-1251797 None:intergenic 30.0%
TATGAGAATGGTTAAAGTAG+AGG - Chr5:1251468-1251487 None:intergenic 30.0%
TATTGTTAACCAATCATGGA+GGG - Chr5:1254063-1254082 None:intergenic 30.0%
TCCAACATAATTAACAGAGT+TGG - Chr5:1252677-1252696 None:intergenic 30.0%
TCCAACTCTGTTAATTATGT+TGG + Chr5:1252673-1252692 MsG0580024135.01.T01:intron 30.0%
TGAATTGCCGACATTTAATT+TGG + Chr5:1252950-1252969 MsG0580024135.01.T01:intron 30.0%
TGATGCTTAAATCTACCTAA+AGG + Chr5:1255351-1255370 MsG0580024135.01.T01:intron 30.0%
TGGTTGAGGTATACTTATTA+TGG + Chr5:1254852-1254871 MsG0580024135.01.T01:intron 30.0%
TGTAATAGTTAAACCAGAAG+AGG - Chr5:1254794-1254813 None:intergenic 30.0%
TGTACGTACCTTAAAAAGAA+CGG - Chr5:1251572-1251591 None:intergenic 30.0%
TTAACAATGAAGGTTTATCC+CGG + Chr5:1252379-1252398 MsG0580024135.01.T01:intron 30.0%
TTAAGTCAAGACAAATAGCT+TGG - Chr5:1253138-1253157 None:intergenic 30.0%
TTACAAAAAATACCCACAGA+CGG + Chr5:1251877-1251896 MsG0580024135.01.T01:intron 30.0%
TTATGAATTAGCCCACAAAA+TGG + Chr5:1255723-1255742 MsG0580024135.01.T01:intron 30.0%
TTATTGTTAACCAATCATGG+AGG - Chr5:1254064-1254083 None:intergenic 30.0%
TTCAACCTATTTCCTATACA+TGG + Chr5:1255643-1255662 MsG0580024135.01.T01:intron 30.0%
TTGATTCCACTAAATCAAGT+AGG - Chr5:1254720-1254739 None:intergenic 30.0%
TTGTAACTCATAAAAGTCAG+CGG - Chr5:1254329-1254348 None:intergenic 30.0%
TTTCAAATTTCAAGCCTCAA+TGG - Chr5:1252345-1252364 None:intergenic 30.0%
! AAAACTAGGTTAGGTTGTTT+GGG + Chr5:1253512-1253531 MsG0580024135.01.T01:intron 30.0%
! AAATTTGAGAGTGGATTTAG+TGG - Chr5:1251246-1251265 None:intergenic 30.0%
! AATATAGTTTTCCTTGGTTG+AGG + Chr5:1254838-1254857 MsG0580024135.01.T01:intron 30.0%
! GGGCTACCTTTTAAATATAA+AGG - Chr5:1255541-1255560 None:intergenic 30.0%
! GTATAGGAAATAGGTTGAAT+AGG - Chr5:1255642-1255661 None:intergenic 30.0%
! TCTAGAGCCAAATTAAATGT+CGG - Chr5:1252960-1252979 None:intergenic 30.0%
! TTCAGAATATTTTCTCCGTT+AGG - Chr5:1253494-1253513 None:intergenic 30.0%
!! ACATTTTGTTTCCTCTGAAA+TGG - Chr5:1255095-1255114 None:intergenic 30.0%
!! AGTACTGATCAATATTCACT+TGG + Chr5:1251383-1251402 MsG0580024135.01.T01:CDS 30.0%
!! ATTTTTAAGAGACTGGCTAA+TGG - Chr5:1255498-1255517 None:intergenic 30.0%
!! CTTCTGGTTTAACTATTACA+CGG + Chr5:1254794-1254813 MsG0580024135.01.T01:intron 30.0%
!! TTTACATTTTCATGGTTTGG+CGG - Chr5:1256391-1256410 None:intergenic 30.0%
!!! CAGCATCTTATGTTACTTTT+AGG + Chr5:1252565-1252584 MsG0580024135.01.T01:CDS 30.0%
!!! CATCTTATGTTACTTTTAGG+TGG + Chr5:1252568-1252587 MsG0580024135.01.T01:CDS 30.0%
!!! GTGATCAGGTTTGTTTTATA+TGG - Chr5:1254976-1254995 None:intergenic 30.0%
!!! TCTCTAACACACTCTTTTTT+TGG - Chr5:1254755-1254774 None:intergenic 30.0%
!!! TTGGCTCTAGATTTTTCATT+TGG + Chr5:1252969-1252988 MsG0580024135.01.T01:intron 30.0%
AAAAAGTTGTGTTGGATGTG+TGG + Chr5:1253410-1253429 MsG0580024135.01.T01:intron 35.0%
AAAATGGGGACGAATATTGT+GGG + Chr5:1255563-1255582 MsG0580024135.01.T01:intron 35.0%
AAGACCATTTATGTTGTGTG+GGG + Chr5:1253333-1253352 MsG0580024135.01.T01:intron 35.0%
AAGCAAATGCCTTGTAAAGT+CGG + Chr5:1256029-1256048 MsG0580024135.01.T01:intron 35.0%
AAGCCAAGTATGCAAAAAGA+AGG - Chr5:1254369-1254388 None:intergenic 35.0%
ACAGTTGTAAAAGATGTAGG+GGG - Chr5:1252232-1252251 None:intergenic 35.0%
ACATTATATGCTATGTGTCC+AGG - Chr5:1252187-1252206 None:intergenic 35.0%
ACGTTAAGCTTTCTATGTTG+AGG - Chr5:1251846-1251865 None:intergenic 35.0%
ACTGATCAATATTCACTTGG+TGG + Chr5:1251386-1251405 MsG0580024135.01.T01:CDS 35.0%
ACTTTATCACAAACTCGGAT+TGG + Chr5:1251306-1251325 MsG0580024135.01.T01:CDS 35.0%
AGCATGGAAAAAGTTGGATT+GGG + Chr5:1255407-1255426 MsG0580024135.01.T01:intron 35.0%
AGGTATCAAAACTGTCTTCA+TGG + Chr5:1252779-1252798 MsG0580024135.01.T01:CDS 35.0%
AGTTAATGCCATCGAATTCT+TGG + Chr5:1256136-1256155 MsG0580024135.01.T01:CDS 35.0%
ATTACACCAGCTTCACAAAA+TGG - Chr5:1254397-1254416 None:intergenic 35.0%
CATTATATGCTATGTGTCCA+GGG - Chr5:1252186-1252205 None:intergenic 35.0%
CCACTTATAGTATGTTCGTA+AGG + Chr5:1251600-1251619 MsG0580024135.01.T01:intron 35.0%
CCTTACGAACATACTATAAG+TGG - Chr5:1251603-1251622 None:intergenic 35.0%
GAAGGTAGTCAAATTGCTTT+AGG + Chr5:1253586-1253605 MsG0580024135.01.T01:intron 35.0%
GAAGTTGTACGAAAATTGTG+TGG + Chr5:1254020-1254039 MsG0580024135.01.T01:intron 35.0%
GATTATCCGTTTACAAGCAT+GGG + Chr5:1251179-1251198 MsG0580024135.01.T01:exon 35.0%
GCAAAAAAGGTGGAAAAATG+TGG - Chr5:1255119-1255138 None:intergenic 35.0%
GTAAGACCATTTATGTTGTG+TGG + Chr5:1253331-1253350 MsG0580024135.01.T01:intron 35.0%
GTACGTACCTTAAAAAGAAC+GGG - Chr5:1251571-1251590 None:intergenic 35.0%
GTATTGTGGATTCTTTAGTG+AGG + Chr5:1253548-1253567 MsG0580024135.01.T01:intron 35.0%
TAAAAGGTAGCCCACAAAAT+GGG + Chr5:1255548-1255567 MsG0580024135.01.T01:intron 35.0%
TAACGAAGACGAAGTCAATT+TGG - Chr5:1254452-1254471 None:intergenic 35.0%
TAGCCAGTCTCTTAAAAATG+TGG + Chr5:1255499-1255518 MsG0580024135.01.T01:intron 35.0%
TCAAACCTACAAAAGGATTG+TGG - Chr5:1256823-1256842 None:intergenic 35.0%
TGAAATTCAAAGGACTTCTC+CGG - Chr5:1256617-1256636 None:intergenic 35.0%
TGACGAAAGTTATGCATCAA+AGG - Chr5:1255795-1255814 None:intergenic 35.0%
TGAGTTACAATGCAGATATG+AGG + Chr5:1254339-1254358 MsG0580024135.01.T01:intron 35.0%
TGATTATCCGTTTACAAGCA+TGG + Chr5:1251178-1251197 MsG0580024135.01.T01:exon 35.0%
TGTCATAAGGCAATTGGTTA+AGG - Chr5:1252129-1252148 None:intergenic 35.0%
TTAAAAGGTAGCCCACAAAA+TGG + Chr5:1255547-1255566 MsG0580024135.01.T01:intron 35.0%
TTACCTGACACTAACAGAAA+AGG - Chr5:1253103-1253122 None:intergenic 35.0%
TTCTACCTATTTCCTATGCA+TGG + Chr5:1255817-1255836 MsG0580024135.01.T01:intron 35.0%
TTGCAAATGCAACAAGACAA+TGG - Chr5:1255930-1255949 None:intergenic 35.0%
TTGTGGCCTGTATATTAACT+AGG - Chr5:1256806-1256825 None:intergenic 35.0%
TTTAGGTCTTTCCATTTCAG+AGG + Chr5:1255081-1255100 MsG0580024135.01.T01:intron 35.0%
TTTATATGGACTTGTCTAGC+AGG - Chr5:1254962-1254981 None:intergenic 35.0%
! AAGTCTTATCCCACTAAGTA+GGG - Chr5:1253731-1253750 None:intergenic 35.0%
! AATATTCGTCCCCATTTTGT+GGG - Chr5:1255561-1255580 None:intergenic 35.0%
! ACAAACTCCCGTTCTTTTTA+AGG + Chr5:1251561-1251580 MsG0580024135.01.T01:CDS 35.0%
! ATTTTGTGAAGCTGGTGTAA+TGG + Chr5:1254396-1254415 MsG0580024135.01.T01:CDS 35.0%
! CATTTTCTGCTTGCATGTTT+TGG + Chr5:1256416-1256435 MsG0580024135.01.T01:intron 35.0%
! GAAAACTAGGTTAGGTTGTT+TGG + Chr5:1253511-1253530 MsG0580024135.01.T01:intron 35.0%
! TAGGAAATAGGTTGAATAGG+AGG - Chr5:1255639-1255658 None:intergenic 35.0%
! TATCTAGAGAAACGAGCTTT+TGG + Chr5:1254230-1254249 MsG0580024135.01.T01:CDS 35.0%
! TCTCGAACACACACTTTTAT+TGG + Chr5:1254657-1254676 MsG0580024135.01.T01:intron 35.0%
! TTTGTTCCATTTTGTGAAGC+TGG + Chr5:1254388-1254407 MsG0580024135.01.T01:CDS 35.0%
! TTTTCTGTTAGTGTCAGGTA+AGG + Chr5:1253102-1253121 MsG0580024135.01.T01:intron 35.0%
!! ATCACAAATTGGGACTAGTT+TGG + Chr5:1254991-1255010 MsG0580024135.01.T01:intron 35.0%
!! CAACCACATTTTTAAGAGAC+TGG - Chr5:1255505-1255524 None:intergenic 35.0%
!! TAATACCTTTAGAACTGCTC+TGG - Chr5:1252543-1252562 None:intergenic 35.0%
!! TCTCACGTTTTATTCATGCT+CGG + Chr5:1256086-1256105 MsG0580024135.01.T01:intron 35.0%
!!! GTCTGTGGGTATTTTTTGTA+AGG - Chr5:1251878-1251897 None:intergenic 35.0%
AAAAGGTAGCCCACAAAATG+GGG + Chr5:1255549-1255568 MsG0580024135.01.T01:intron 40.0%
AAAGATGTAGGGGGAAATGA+AGG - Chr5:1252223-1252242 None:intergenic 40.0%
AAATAGCTTAGAGACTTGGG+AGG + Chr5:1254899-1254918 MsG0580024135.01.T01:intron 40.0%
AACGAGTGTCATAAGGCAAT+TGG - Chr5:1252135-1252154 None:intergenic 40.0%
AAGATGAAAGCAGGAAGAAG+AGG - Chr5:1251218-1251237 None:intergenic 40.0%
AAGATGTAGGGGGAAATGAA+GGG - Chr5:1252222-1252241 None:intergenic 40.0%
AAGCATGTTAATGGTCGAGT+GGG - Chr5:1253008-1253027 None:intergenic 40.0%
ACATGTGAGTTGTCTGAACT+TGG + Chr5:1254264-1254283 MsG0580024135.01.T01:intron 40.0%
ACCACTTACAGAAGGTCTTT+GGG + Chr5:1254178-1254197 MsG0580024135.01.T01:CDS 40.0%
ACTAGTCCCAATTTGTGATC+AGG - Chr5:1254990-1255009 None:intergenic 40.0%
AGACCATTTATGTTGTGTGG+GGG + Chr5:1253334-1253353 MsG0580024135.01.T01:intron 40.0%
AGCACATCGACATAATGTAG+CGG + Chr5:1255035-1255054 MsG0580024135.01.T01:intron 40.0%
ATACCACATGTCTGCTAGTA+TGG + Chr5:1256198-1256217 MsG0580024135.01.T01:intron 40.0%
ATCTCACTTGAAGGAACATG+TGG - Chr5:1252459-1252478 None:intergenic 40.0%
ATGAAGCCATAGTTGCCAAT+GGG - Chr5:1251347-1251366 None:intergenic 40.0%
ATTAGCCCACAAAATGGAGA+CGG + Chr5:1255729-1255748 MsG0580024135.01.T01:intron 40.0%
CAAAAAGGAAGAGAGGAAGA+GGG + Chr5:1255378-1255397 MsG0580024135.01.T01:intron 40.0%
CAAAATGGGGACGAATATTG+TGG + Chr5:1255562-1255581 MsG0580024135.01.T01:intron 40.0%
CAACATTAGAGAGAGAGTTG+AGG + Chr5:1253463-1253482 MsG0580024135.01.T01:intron 40.0%
CGTAAGTATCCGACTTTACA+AGG - Chr5:1256041-1256060 None:intergenic 40.0%
CTACCTAAAGGAGAGCAAAA+AGG + Chr5:1255363-1255382 MsG0580024135.01.T01:intron 40.0%
CTACTTAGTGGGATAAGACT+TGG + Chr5:1253730-1253749 MsG0580024135.01.T01:intron 40.0%
GAGCATGGAAAAAGTTGGAT+TGG + Chr5:1255406-1255425 MsG0580024135.01.T01:intron 40.0%
GATACTGTATTTAGCGAGGT+AGG + Chr5:1253864-1253883 MsG0580024135.01.T01:intron 40.0%
GATAGATTACACCAGAGTCT+TGG + Chr5:1252901-1252920 MsG0580024135.01.T01:CDS 40.0%
GTACTCGGAACTAGAAGATT+CGG + Chr5:1254154-1254173 MsG0580024135.01.T01:CDS 40.0%
TAAGCATGTTAATGGTCGAG+TGG - Chr5:1253009-1253028 None:intergenic 40.0%
TACAGAAAACATGAACGGTG+TGG - Chr5:1256689-1256708 None:intergenic 40.0%
TACCACATGTCTGCTAGTAT+GGG + Chr5:1256199-1256218 MsG0580024135.01.T01:intron 40.0%
TACTCGGAACTAGAAGATTC+GGG + Chr5:1254155-1254174 MsG0580024135.01.T01:CDS 40.0%
TAGCCTATTGCACTGCTTAT+TGG + Chr5:1253762-1253781 MsG0580024135.01.T01:intron 40.0%
TATCATGTATGTCCGTCTGT+GGG - Chr5:1251892-1251911 None:intergenic 40.0%
TATGGGCAATTATCAGTGCA+TGG + Chr5:1256216-1256235 MsG0580024135.01.T01:intron 40.0%
TCAGACAACTCACATGTCAT+CGG - Chr5:1254261-1254280 None:intergenic 40.0%
TCTCACTTGAAGGAACATGT+GGG - Chr5:1252458-1252477 None:intergenic 40.0%
TCTTCAGAGTTCAAACTTGC+TGG - Chr5:1256010-1256029 None:intergenic 40.0%
TGGCATATGGAATATACCAG+TGG - Chr5:1253791-1253810 None:intergenic 40.0%
TGGGTCCCACTAAATTTATG+CGG + Chr5:1254692-1254711 MsG0580024135.01.T01:intron 40.0%
TGTCTTGAATTTGCACTGCT+TGG + Chr5:1256733-1256752 MsG0580024135.01.T01:three_prime_UTR 40.0%
TGTTGTCAACGAGTGTCATA+AGG - Chr5:1252142-1252161 None:intergenic 40.0%
TTACAATGCAGATATGAGGC+AGG + Chr5:1254343-1254362 MsG0580024135.01.T01:intron 40.0%
TTATCATGTATGTCCGTCTG+TGG - Chr5:1251893-1251912 None:intergenic 40.0%
TTGCCAATAAGCAGTGCAAT+AGG - Chr5:1253768-1253787 None:intergenic 40.0%
! AACTTTTGCATAGTCTGCTG+CGG - Chr5:1252749-1252768 None:intergenic 40.0%
! AGAGAGAGCATGGAAAAAGT+TGG + Chr5:1255401-1255420 MsG0580024135.01.T01:intron 40.0%
! AGGCCTTCTTTTTGCATACT+TGG + Chr5:1254363-1254382 MsG0580024135.01.T01:CDS 40.0%
! AGTTGGTCTCTTTCGAAAGT+CGG - Chr5:1256563-1256582 None:intergenic 40.0%
! CAAGTCTTATCCCACTAAGT+AGG - Chr5:1253732-1253751 None:intergenic 40.0%
! CAATATTCGTCCCCATTTTG+TGG - Chr5:1255562-1255581 None:intergenic 40.0%
! CTTCCTTTTTGCTCTCCTTT+AGG - Chr5:1255369-1255388 None:intergenic 40.0%
! GATCAATATTCACTTGGTGG+TGG + Chr5:1251389-1251408 MsG0580024135.01.T01:CDS 40.0%
! GTCGTCTTCTTTTCATTGAC+TGG - Chr5:1252822-1252841 None:intergenic 40.0%
! TACTTCCAGAGCAGTTCTAA+AGG + Chr5:1252535-1252554 MsG0580024135.01.T01:intron 40.0%
! TTTGAGAGTGGATTTAGTGG+AGG - Chr5:1251243-1251262 None:intergenic 40.0%
!! ACGTTTTATTCATGCTCGGT+AGG + Chr5:1256090-1256109 MsG0580024135.01.T01:intron 40.0%
!! GTGTTGCTTCAAGATCAAGT+CGG - Chr5:1254581-1254600 None:intergenic 40.0%
!! TCATGGAATAGCTTTGAACG+AGG + Chr5:1252796-1252815 MsG0580024135.01.T01:CDS 40.0%
!!! TGGCTTGCTTTTCGTGATTA+CGG + Chr5:1252715-1252734 MsG0580024135.01.T01:CDS 40.0%
AAGAAGGCAGCGTTAAGATC+AGG + Chr5:1251432-1251451 MsG0580024135.01.T01:CDS 45.0%
ACCATTTATGTTGTGTGGGG+GGG + Chr5:1253336-1253355 MsG0580024135.01.T01:intron 45.0%
AGAACGGGAGTTTGTCTAAG+TGG - Chr5:1251556-1251575 None:intergenic 45.0%
AGAGTTGAGGTAGCACCTAA+CGG + Chr5:1253476-1253495 MsG0580024135.01.T01:intron 45.0%
AGCTTGATTGATTGCAGTGC+AGG + Chr5:1251503-1251522 MsG0580024135.01.T01:intron 45.0%
AGGAGACTAGATCAGATGGA+AGG + Chr5:1253568-1253587 MsG0580024135.01.T01:intron 45.0%
AGGAGAGCAAAAAGGAAGAG+AGG + Chr5:1255371-1255390 MsG0580024135.01.T01:intron 45.0%
AGGCCCCGCATAAATTTAGT+GGG - Chr5:1254700-1254719 None:intergenic 45.0%
AGTGAGGAGACTAGATCAGA+TGG + Chr5:1253564-1253583 MsG0580024135.01.T01:intron 45.0%
AGTTTGTCTAAGTGGACCCT+GGG - Chr5:1251548-1251567 None:intergenic 45.0%
ATGAAGCTGACCCTACTTAG+TGG + Chr5:1253718-1253737 MsG0580024135.01.T01:intron 45.0%
ATGTTAATGGTCGAGTGGGA+AGG - Chr5:1253004-1253023 None:intergenic 45.0%
CAAAATGGAGACGGATCTGT+TGG + Chr5:1255738-1255757 MsG0580024135.01.T01:intron 45.0%
CAATCTCATGCACATACCTG+TGG - Chr5:1253897-1253916 None:intergenic 45.0%
CACAGCTTACTTGCAAGGAA+AGG - Chr5:1254426-1254445 None:intergenic 45.0%
CACATCGACATAATGTAGCG+GGG + Chr5:1255037-1255056 MsG0580024135.01.T01:intron 45.0%
CAGAAAATGGTCCAAGACTC+TGG - Chr5:1252915-1252934 None:intergenic 45.0%
CATGAAGCCATAGTTGCCAA+TGG - Chr5:1251348-1251367 None:intergenic 45.0%
CCGAAACACACTTCTGTACT+GGG - Chr5:1254290-1254309 None:intergenic 45.0%
CTTTCGAAAGAGACCAACTG+CGG + Chr5:1256564-1256583 MsG0580024135.01.T01:CDS 45.0%
GAATTCTTGGATCTAGGCGA+TGG + Chr5:1256149-1256168 MsG0580024135.01.T01:CDS 45.0%
GACCACTTACAGAAGGTCTT+TGG + Chr5:1254177-1254196 MsG0580024135.01.T01:CDS 45.0%
GACCATTTATGTTGTGTGGG+GGG + Chr5:1253335-1253354 MsG0580024135.01.T01:intron 45.0%
GATTCCAAGACTTAGGGACT+TGG + Chr5:1253077-1253096 MsG0580024135.01.T01:CDS 45.0%
GCAAAAAGGAAGAGAGGAAG+AGG + Chr5:1255377-1255396 MsG0580024135.01.T01:intron 45.0%
GCAACACCCATGCTTGTAAA+CGG - Chr5:1251188-1251207 None:intergenic 45.0%
GCACATCGACATAATGTAGC+GGG + Chr5:1255036-1255055 MsG0580024135.01.T01:intron 45.0%
GCACGAGGAAAGATGTATTG+TGG + Chr5:1253534-1253553 MsG0580024135.01.T01:intron 45.0%
GCCATCGAATTCTTGGATCT+AGG + Chr5:1256143-1256162 MsG0580024135.01.T01:CDS 45.0%
GCCTAGATCCAAGAATTCGA+TGG - Chr5:1256147-1256166 None:intergenic 45.0%
GGGTCCCACTAAATTTATGC+GGG + Chr5:1254693-1254712 MsG0580024135.01.T01:intron 45.0%
GGTCCCACTAAATTTATGCG+GGG + Chr5:1254694-1254713 MsG0580024135.01.T01:intron 45.0%
GGTGTGTTCTCATGATTTCC+AGG + Chr5:1256525-1256544 MsG0580024135.01.T01:intron 45.0%
GTGGAGGTTAAGATGAAAGC+AGG - Chr5:1251227-1251246 None:intergenic 45.0%
TAGGCCCCGCATAAATTTAG+TGG - Chr5:1254701-1254720 None:intergenic 45.0%
TATGAAGGCAGAGTTTCCCA+GGG + Chr5:1251529-1251548 MsG0580024135.01.T01:CDS 45.0%
TATGCTATGTGTCCAGGGAA+AGG - Chr5:1252181-1252200 None:intergenic 45.0%
TCCGAAACACACTTCTGTAC+TGG - Chr5:1254291-1254310 None:intergenic 45.0%
TGAAACAACTACTGGAGAGC+AGG + Chr5:1252594-1252613 MsG0580024135.01.T01:CDS 45.0%
TGAAGCTGACCCTACTTAGT+GGG + Chr5:1253719-1253738 MsG0580024135.01.T01:intron 45.0%
TGCAAAAGTTGCGAGTGAGA+AGG + Chr5:1252759-1252778 MsG0580024135.01.T01:CDS 45.0%
TGGGGTTGTAGCAGATATGA+TGG + Chr5:1252414-1252433 MsG0580024135.01.T01:CDS 45.0%
TTATGAAGGCAGAGTTTCCC+AGG + Chr5:1251528-1251547 MsG0580024135.01.T01:CDS 45.0%
! ACAGATCCGTCTCCATTTTG+TGG - Chr5:1255738-1255757 None:intergenic 45.0%
! ACAGGCCACAATCCTTTTGT+AGG + Chr5:1256815-1256834 MsG0580024135.01.T01:three_prime_UTR 45.0%
! CAGATCCGTCTCCATTTTGT+GGG - Chr5:1255737-1255756 None:intergenic 45.0%
! CCCAGTACAGAAGTGTGTTT+CGG + Chr5:1254287-1254306 MsG0580024135.01.T01:intron 45.0%
! CGAGGTAGGTTTTTATCCAC+AGG + Chr5:1253878-1253897 MsG0580024135.01.T01:intron 45.0%
! CGATGTTTTCCCTCCATGAT+TGG + Chr5:1254051-1254070 MsG0580024135.01.T01:intron 45.0%
! GGTGGGTTTGAAACAACTAC+TGG + Chr5:1252586-1252605 MsG0580024135.01.T01:CDS 45.0%
! TGGCCTTTTCTGTTAGTGTC+AGG + Chr5:1253097-1253116 MsG0580024135.01.T01:CDS 45.0%
! TGTGAAGCTGGTGTAATGGA+TGG + Chr5:1254400-1254419 MsG0580024135.01.T01:CDS 45.0%
! TTGCAGTGCAGGCTTTATGA+AGG + Chr5:1251514-1251533 MsG0580024135.01.T01:intron 45.0%
! TTGGCGGCAGAAGCTTTTTA+AGG - Chr5:1256375-1256394 None:intergenic 45.0%
!! AAACTCGGATTGGTTCCAAG+TGG + Chr5:1251316-1251335 MsG0580024135.01.T01:CDS 45.0%
!! AACTCGGATTGGTTCCAAGT+GGG + Chr5:1251317-1251336 MsG0580024135.01.T01:CDS 45.0%
!! CTCAATCACCGGTTTATGAC+CGG + Chr5:1256595-1256614 MsG0580024135.01.T01:CDS 45.0%
!! GGCTTGCTTTTCGTGATTAC+GGG + Chr5:1252716-1252735 MsG0580024135.01.T01:CDS 45.0%
!! TAAACCAGAAGAGGAGTGTC+AGG - Chr5:1254785-1254804 None:intergenic 45.0%
AAGGCCAAGTCCCTAAGTCT+TGG - Chr5:1253084-1253103 None:intergenic 50.0%
CACTGCTTATTGGCAACCAC+TGG + Chr5:1253772-1253791 MsG0580024135.01.T01:intron 50.0%
GAGTTTGTCTAAGTGGACCC+TGG - Chr5:1251549-1251568 None:intergenic 50.0%
GATTCGGGACCACTTACAGA+AGG + Chr5:1254170-1254189 MsG0580024135.01.T01:CDS 50.0%
GCCCAAAGACCTTCTGTAAG+TGG - Chr5:1254182-1254201 None:intergenic 50.0%
GGACTTCTCCGGTCATAAAC+CGG - Chr5:1256606-1256625 None:intergenic 50.0%
TCCCCCCCACACAACATAAA+TGG - Chr5:1253340-1253359 None:intergenic 50.0%
TGCCCATACTAGCAGACATG+TGG - Chr5:1256204-1256223 None:intergenic 50.0%
TGTTCCTGACACTCCTCTTC+TGG + Chr5:1254778-1254797 MsG0580024135.01.T01:intron 50.0%
! AGTCGGCATTAAGCATTGCC+TGG - Chr5:1256546-1256565 None:intergenic 50.0%
! CTTCTTCAGGGTGCTTTGAG+AGG + Chr5:1252856-1252875 MsG0580024135.01.T01:CDS 50.0%
!! TCAGGGTGCTTTGAGAGGTT+TGG + Chr5:1252861-1252880 MsG0580024135.01.T01:CDS 50.0%
AGGAAGAGGGAGAGAGAGCA+TGG + Chr5:1255391-1255410 MsG0580024135.01.T01:intron 55.0%
ATGAACGGTGTGGTAAGCCG+TGG - Chr5:1256679-1256698 None:intergenic 55.0%
CGGAGGCTGTTCTCAATCAC+CGG + Chr5:1256584-1256603 MsG0580024135.01.T01:CDS 55.0%
GCGGGGCCTACTTGATTTAG+TGG + Chr5:1254711-1254730 MsG0580024135.01.T01:intron 55.0%
GGCAGCACAGCTTACTTGCA+AGG - Chr5:1254431-1254450 None:intergenic 55.0%
GGTCGACCCATTGGCAACTA+TGG + Chr5:1251338-1251357 MsG0580024135.01.T01:CDS 55.0%
GTTTATCCCGGAACACGAGC+TGG + Chr5:1252391-1252410 MsG0580024135.01.T01:CDS 55.0%
TCGAAAGAGACCAACTGCGG+AGG + Chr5:1256567-1256586 MsG0580024135.01.T01:CDS 55.0%
TTCCAAGTGGGTCGACCCAT+TGG + Chr5:1251329-1251348 MsG0580024135.01.T01:CDS 55.0%
TTGAGAACAGCCTCCGCAGT+TGG - Chr5:1256580-1256599 None:intergenic 55.0%
TTGGATCTAGGCGATGGTGC+TGG + Chr5:1256155-1256174 MsG0580024135.01.T01:CDS 55.0%
! GGTTAGGTTGTTTGGGCACG+AGG + Chr5:1253519-1253538 MsG0580024135.01.T01:intron 55.0%
! TGCTGGTTGGGAGTTGCTTC+AGG + Chr5:1256172-1256191 MsG0580024135.01.T01:CDS 55.0%
!! ATCTAGGCGATGGTGCTGGT+TGG + Chr5:1256159-1256178 MsG0580024135.01.T01:CDS 55.0%
!! TCTAGGCGATGGTGCTGGTT+GGG + Chr5:1256160-1256179 MsG0580024135.01.T01:CDS 55.0%
AACCCCACCAGCTCGTGTTC+CGG - Chr5:1252401-1252420 None:intergenic 60.0%
ATCCCGGAACACGAGCTGGT+GGG + Chr5:1252395-1252414 MsG0580024135.01.T01:CDS 60.0%
TATCCCGGAACACGAGCTGG+TGG + Chr5:1252394-1252413 MsG0580024135.01.T01:CDS 60.0%
TGCCAATGGGTCGACCCACT+TGG - Chr5:1251334-1251353 None:intergenic 60.0%
! TGTTGTGTGGGGGGGAGTGT+TGG + Chr5:1253344-1253363 MsG0580024135.01.T01:intron 60.0%
!! GTTGTGTGGGGGGGAGTGTT+GGG + Chr5:1253345-1253364 MsG0580024135.01.T01:intron 60.0%
ACCCCACCAGCTCGTGTTCC+GGG - Chr5:1252400-1252419 None:intergenic 65.0%
TCCCGGAACACGAGCTGGTG+GGG + Chr5:1252396-1252415 MsG0580024135.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1251167 1256878 1251167 ID=MsG0580024135.01;Name=MsG0580024135.01
Chr5 mRNA 1251167 1256878 1251167 ID=MsG0580024135.01.T01;Parent=MsG0580024135.01;Name=MsG0580024135.01.T01;_AED=0.48;_eAED=0.48;_QI=30|1|1|1|1|1|11|248|392
Chr5 exon 1251167 1251453 1251167 ID=MsG0580024135.01.T01:exon:325;Parent=MsG0580024135.01.T01
Chr5 exon 1251525 1251582 1251525 ID=MsG0580024135.01.T01:exon:326;Parent=MsG0580024135.01.T01
Chr5 exon 1252391 1252471 1252391 ID=MsG0580024135.01.T01:exon:327;Parent=MsG0580024135.01.T01
Chr5 exon 1252544 1252615 1252544 ID=MsG0580024135.01.T01:exon:328;Parent=MsG0580024135.01.T01
Chr5 exon 1252715 1252944 1252715 ID=MsG0580024135.01.T01:exon:329;Parent=MsG0580024135.01.T01
Chr5 exon 1253047 1253118 1253047 ID=MsG0580024135.01.T01:exon:330;Parent=MsG0580024135.01.T01
Chr5 exon 1254154 1254267 1254154 ID=MsG0580024135.01.T01:exon:331;Parent=MsG0580024135.01.T01
Chr5 exon 1254354 1254435 1254354 ID=MsG0580024135.01.T01:exon:332;Parent=MsG0580024135.01.T01
Chr5 exon 1254558 1254604 1254558 ID=MsG0580024135.01.T01:exon:333;Parent=MsG0580024135.01.T01
Chr5 exon 1256112 1256193 1256112 ID=MsG0580024135.01.T01:exon:334;Parent=MsG0580024135.01.T01
Chr5 exon 1256547 1256878 1256547 ID=MsG0580024135.01.T01:exon:335;Parent=MsG0580024135.01.T01
Chr5 five_prime_UTR 1251167 1251196 1251167 ID=MsG0580024135.01.T01:five_prime_utr;Parent=MsG0580024135.01.T01
Chr5 CDS 1251197 1251453 1251197 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1251525 1251582 1251525 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1252391 1252471 1252391 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1252544 1252615 1252544 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1252715 1252944 1252715 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1253047 1253118 1253047 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1254154 1254267 1254154 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1254354 1254435 1254354 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1254558 1254604 1254558 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1256112 1256193 1256112 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 CDS 1256547 1256630 1256547 ID=MsG0580024135.01.T01:cds;Parent=MsG0580024135.01.T01
Chr5 three_prime_UTR 1256631 1256878 1256631 ID=MsG0580024135.01.T01:three_prime_utr;Parent=MsG0580024135.01.T01
Gene Sequence

>MsG0580024135.01.T01

ATGGGTGTTGCTGCTTTTCCTCTTCTTCCTGCTTTCATCTTAACCTCCACTAAATCCACTCTCAAATTTCAAGTTAAAGCTAATTATAATGATAATAGTAATGGCTTCAACTTTATCACAAACTCGGATTGGTTCCAAGTGGGTCGACCCATTGGCAACTATGGCTTCATGAACGTCACTACTTCTAGTACTGATCAATATTCACTTGGTGGTGGATTGAAAACTCAAGATGTTCAAGAAGGCAGCGTTAAGATCAGGCTTTATGAAGGCAGAGTTTCCCAGGGTCCACTTAGACAAACTCCCGTTCTTTTTAAGGTTTATCCCGGAACACGAGCTGGTGGGGTTGTAGCAGATATGATGGCTGCAAACGAGTTGAATTCCCACATGTTCCTTCAAAGCAGTTCTAAAGGTATTAGTCAGCATCTTATGTTACTTTTAGGTGGGTTTGAAACAACTACTGGAGAGCAGTGGCTTGCTTTTCGTGATTACGGGAAATCTACCGCAGCAGACTATGCAAAAGTTGCGAGTGAGAAGGTATCAAAACTGTCTTCATGGAATAGCTTTGAACGAGGCCAGTCAATGAAAAGAAGACGACGTTTCATTATAAAGCTTCTTCAGGGTGCTTTGAGAGGTTTGGCTTACATGCACGATCATGATAGATTACACCAGAGTCTTGGACCATTTTCTGTATCTCTCAACACAATATCTGAAAGTGAAGCTCCTTATTTGATTCCAAGACTTAGGGACTTGGCCTTTTCTGTTAGTGTCAGGTACTCGGAACTAGAAGATTCGGGACCACTTACAGAAGGTCTTTGGGCACGAGCATCAGCAGCTAGTGCATTCTCTTATCTAGAGAAACGAGCTTTTGGAATAGCCGATGACATATATGAGGCAGGCCTTCTTTTTGCATACTTGGCTTTTGTTCCATTTTGTGAAGCTGGTGTAATGGATGGCCTTTCCTTGCAAAGACTTTTAGAGAACACTTTCCGACTTGATCTTGAAGCAACACGAGAGTACTGTATAGCAGACGACAAGTTAGTTAATGCCATCGAATTCTTGGATCTAGGCGATGGTGCTGGTTGGGAGTTGCTTCAGGCAATGCTTAATGCCGACTTTCGAAAGAGACCAACTGCGGAGGCTGTTCTCAATCACCGGTTTATGACCGGAGAAGTCCTTTGA

Protein sequence

>MsG0580024135.01.T01

MGVAAFPLLPAFILTSTKSTLKFQVKANYNDNSNGFNFITNSDWFQVGRPIGNYGFMNVTTSSTDQYSLGGGLKTQDVQEGSVKIRLYEGRVSQGPLRQTPVLFKVYPGTRAGGVVADMMAANELNSHMFLQSSSKGISQHLMLLLGGFETTTGEQWLAFRDYGKSTAADYAKVASEKVSKLSSWNSFERGQSMKRRRRFIIKLLQGALRGLAYMHDHDRLHQSLGPFSVSLNTISESEAPYLIPRLRDLAFSVSVRYSELEDSGPLTEGLWARASAASAFSYLEKRAFGIADDIYEAGLLFAYLAFVPFCEAGVMDGLSLQRLLENTFRLDLEATREYCIADDKLVNAIEFLDLGDGAGWELLQAMLNADFRKRPTAEAVLNHRFMTGEVL*