AlfalfaGEDB | MsG0780036064.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036064.01

KEGG: K01602
GO: -
PFAM: PF00101 PF12338

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036064.01.T01	DAD35353.1	63.878	263	76	4	1	245	1	262	4.90E-114	338

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036064.01.T01	P07689	83.951	162	26	0	3	164	2	163	1.31E-100	293

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036064.01.T01	A0A822YTB9	63.878	263	76	4	1	245	1	262	2.34e-114	338

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0780036064.01	-0.807994	3.850134e-50	2.175815e-47
MsG0080047910.01	MsG0780036064.01	0.882715	8.256223e-71	5.082592e-67
MsG0080047945.01	MsG0780036064.01	0.854543	1.147497e-61	2.571694e-58
MsG0080047955.01	MsG0780036064.01	0.811602	6.449238e-51	4.009234e-48
MsG0080047956.01	MsG0780036064.01	0.842244	2.910589e-58	4.386133e-55
MsG0080047967.01	MsG0780036064.01	0.871953	4.611164e-67	1.894675e-63
MsG0080048036.01	MsG0780036064.01	-0.817687	2.898106e-52	2.125000e-49
MsG0080048059.01	MsG0780036064.01	0.928198	4.049835e-92	2.106173e-87
MsG0080048486.01	MsG0780036064.01	-0.829679	4.497760e-55	4.636217e-52
MsG0080048487.01	MsG0780036064.01	-0.824429	8.108924e-54	7.180376e-51

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PPI

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Gene1	Gene2	Type
MsG0780036068.01	MsG0780036064.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036064.01.T01	MTR_7g007210	93.038	158	11	0	11	168	11	168	4.12e-109	312
MsG0780036064.01.T01	MTR_7g007220	94.805	154	8	0	11	164	11	164	5.02e-109	312
MsG0780036064.01.T01	MTR_7g007200	94.156	154	9	0	11	164	11	164	6.46e-109	311
MsG0780036064.01.T01	MTR_7g007120	94.156	154	9	0	11	164	11	164	1.73e-108	310
MsG0780036064.01.T01	MTR_7g007120	94.156	154	9	0	11	164	11	164	1.79e-108	310
MsG0780036064.01.T01	MTR_7g007120	94.771	153	8	0	12	164	12	164	1.81e-108	310
MsG0780036064.01.T01	MTR_7g007230	92.810	153	11	0	12	164	12	164	6.13e-106	304
MsG0780036064.01.T01	MTR_6g018310	83.951	162	25	1	4	164	2	163	4.03e-99	286
MsG0780036064.01.T01	MTR_6g018300	83.333	162	23	2	4	164	2	160	2.37e-96	280
MsG0780036064.01.T01	MTR_4g127870	52.857	140	62	3	28	164	15	153	1.83e-50	163

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036064.01.T01	AT1G67090	71.687	166	42	2	1	165	1	162	1.50e-82	245
MsG0780036064.01.T01	AT5G38430	71.084	166	43	2	1	165	1	162	1.10e-81	243
MsG0780036064.01.T01	AT5G38430	71.084	166	43	2	1	165	1	162	1.10e-81	243
MsG0780036064.01.T01	AT5G38410	70.482	166	44	2	1	165	1	162	2.60e-81	242
MsG0780036064.01.T01	AT5G38420	70.482	166	44	2	1	165	1	162	7.75e-81	240
MsG0780036064.01.T01	AT5G38410	68.421	171	44	3	1	165	1	167	3.09e-79	236
MsG0780036064.01.T01	AT5G38410	67.470	166	42	3	1	165	1	155	1.24e-74	224
MsG0780036064.01.T01	AT5G38410	71.429	70	20	0	178	247	102	171	3.53e-32	116
MsG0780036064.01.T01	AT1G67090	65.217	115	35	2	1	114	1	111	2.77e-44	146

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Find 69 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAATGGAGCCACCGCGC+CGG	0.560979	7:-1997822	None:intergenic
AACTGTAGTCACAGCTGAAG+AGG	0.597051	7:-1997777	None:intergenic
AACTTCTTCTTGCCAATAGG+AGG	0.515017	7:-1998101	None:intergenic
AAGAAGTTGATTACCTTATA+AGG	0.244592	7:+1998171	MsG0780036064.01.T01:CDS
AAGTCACCAGGATACTATGA+TGG	0.574009	7:+1998384	MsG0780036064.01.T01:CDS
AATTCACCAGGATACTATGA+CGG	0.657839	7:+2004973	MsG0780036064.01.T01:CDS
AATTGTTCTCTGGTCAATGG+TGG	0.637841	7:-1998143	None:intergenic
ACCATTGACCAGAGAACAAT+TGG	0.397843	7:+1998145	MsG0780036064.01.T01:CDS
ACCTTTGATAACTTGCAGAA+AGG	0.486549	7:+2004928	MsG0780036064.01.T01:CDS
ACGGACGTTACTGGACAATG+TGG	0.708236	7:+2004992	MsG0780036064.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGAGATCACTTGAT+TGG	-	Chr7:2000152-2000171	None:intergenic	30.0%
AAAAATGGCTCAATTACTCT+TGG	-	Chr7:2000449-2000468	None:intergenic	30.0%
AAAAGTTGTATGGTAAAGGT+TGG	+	Chr7:2000000-2000019	MsG0780036064.01.T01:intron	30.0%
AAAATCACTTCTCAACTTTG+TGG	-	Chr7:2000129-2000148	None:intergenic	30.0%
AAAGATGAGAATGAATTAGG+TGG	-	Chr7:1998860-1998879	None:intergenic	30.0%
AAAGTTGTATGGTAAAGGTT+GGG	+	Chr7:2000001-2000020	MsG0780036064.01.T01:intron	30.0%
AAATGCATTAATCGAGAAGA+GGG	-	Chr7:2003088-2003107	None:intergenic	30.0%
AACACAATGCATGATAAGAT+TGG	+	Chr7:2001943-2001962	MsG0780036064.01.T01:intron	30.0%
AAGAAGGTTATGTTCATAAC+GGG	+	Chr7:2003222-2003241	MsG0780036064.01.T01:intron	30.0%
AAGCGAAAACCAAAAAACAA+AGG	-	Chr7:1998669-1998688	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	1997758	2005176	1997758	ID=MsG0780036064.01;Name=MsG0780036064.01
Chr7	mRNA	1997758	2005176	1997758	ID=MsG0780036064.01.T01;Parent=MsG0780036064.01;Name=MsG0780036064.01.T01;_AED=0.49;_eAED=0.50;_QI=0\|0\|0\|1\|0.66\|0.75\|4\|0\|247
Chr7	exon	1997758	1997937	1997758	ID=MsG0780036064.01.T01:exon:15614;Parent=MsG0780036064.01.T01
Chr7	exon	1998095	1998229	1998095	ID=MsG0780036064.01.T01:exon:15615;Parent=MsG0780036064.01.T01
Chr7	exon	1998357	1998533	1998357	ID=MsG0780036064.01.T01:exon:15616;Parent=MsG0780036064.01.T01
Chr7	exon	2004925	2005176	2004925	ID=MsG0780036064.01.T01:exon:15617;Parent=MsG0780036064.01.T01
Chr7	CDS	1997758	1997937	1997758	ID=MsG0780036064.01.T01:cds;Parent=MsG0780036064.01.T01
Chr7	CDS	1998095	1998229	1998095	ID=MsG0780036064.01.T01:cds;Parent=MsG0780036064.01.T01
Chr7	CDS	1998357	1998533	1998357	ID=MsG0780036064.01.T01:cds;Parent=MsG0780036064.01.T01
Chr7	CDS	2004925	2005176	2004925	ID=MsG0780036064.01.T01:cds;Parent=MsG0780036064.01.T01

Gene Sequence

>MsG0780036064.01.T01

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCCGGCGCGGTGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAAGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCAAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACTCCACCTTTGATAACTTGCAGAAAGGATTTGTGTACCGTGAGAACCACAATTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGTTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTTCGTATCATCGGATTCGACAATCTTTGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCACCAGTTTACTAA

Protein sequence

>MsG0780036064.01.T01

MASSIMSSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNSTFDNLQKGFVYRENHNSPGYYDGRYWTMWKLPLFGATDASQVLKEFDEAIAAYPDAFVRIIGFDNLCQVQCISFIAHTPPVY*