AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024140.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024140.01.T01 MTR_5g006320 95.425 153 4 1 71 220 1 153 4.02e-104 297
MsG0580024140.01.T01 MTR_4g053120 32.237 152 92 4 70 210 3 154 2.55e-21 86.7
MsG0580024140.01.T01 MTR_2g086510 37.209 129 77 3 87 211 27 155 3.12e-21 86.7
MsG0580024140.01.T01 MTR_1g112050 34.667 150 88 5 70 210 5 153 7.00e-19 80.5
MsG0580024140.01.T01 MTR_1g112030 33.987 153 85 5 70 210 7 155 2.38e-18 79.0
MsG0580024140.01.T01 MTR_1g112030 33.987 153 85 5 70 210 11 159 2.82e-18 79.0
MsG0580024140.01.T01 MTR_2g006290 33.333 135 82 3 81 210 17 148 1.26e-17 77.0
MsG0580024140.01.T01 MTR_8g088720 33.333 138 83 3 80 212 15 148 2.51e-17 76.3
MsG0580024140.01.T01 MTR_4g098490 32.759 116 71 3 102 216 55 164 2.58e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024140.01.T01 AT4G14890 80.189 106 21 0 115 220 49 154 1.50e-60 187
MsG0580024140.01.T01 AT2G27510 42.000 100 56 2 114 211 56 155 1.27e-21 87.4
MsG0580024140.01.T01 AT1G60950 35.556 135 77 6 83 211 18 148 4.53e-17 75.5
MsG0580024140.01.T01 AT5G10000 31.387 137 84 2 85 211 12 148 1.47e-15 71.2
MsG0580024140.01.T01 AT1G10960 32.353 136 84 4 81 211 16 148 1.35e-14 68.9
MsG0580024140.01.T01 AT1G32550 31.915 141 87 4 79 216 25 159 1.54e-13 66.6

Find 64 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCAATGCCTTTGATAATA+TGG 0.193692 5:+1286997 None:intergenic
TCGTTCTGATTGTCATATTA+AGG 0.194811 5:-1286825 MsG0580024140.01.T01:CDS
CTGCGTAAGGGGTGGGCATC+GGG 0.308414 5:-1288927 MsG0580024140.01.T01:CDS
AAGGATAAGACTTGTGGTTA+TGG 0.341118 5:+1287281 None:intergenic
CGCATCACGTCTGCTTATCT+CGG 0.363824 5:+1288959 None:intergenic
TCTCAGAAACATTTCACATT+TGG 0.364935 5:-1287249 MsG0580024140.01.T01:CDS
CGTAAGGGGTGGGCATCGGG+CGG 0.393967 5:-1288924 MsG0580024140.01.T01:CDS
TTTGATAATATGGTTTCATC+AGG 0.398760 5:+1287007 None:intergenic
CTGAAAGCTAAATTAGTCAT+TGG 0.415804 5:+1286760 None:intergenic
GTGGTTATGGATTGGTGGGA+GGG 0.417939 5:+1287294 None:intergenic
ACTGCGTAAGGGGTGGGCAT+CGG 0.429092 5:-1288928 MsG0580024140.01.T01:CDS
TTCTGTCTGAAGAGAGTTAA+GGG 0.429353 5:+1287181 None:intergenic
GAGTTAAGGGTGTAAATTGA+AGG 0.462964 5:+1287194 None:intergenic
TTATCAAAGGCATTGGACTC+TGG 0.464183 5:-1286992 MsG0580024140.01.T01:CDS
CTTCTGTCTGAAGAGAGTTA+AGG 0.465427 5:+1287180 None:intergenic
AACCATATTATCAAAGGCAT+TGG 0.476989 5:-1286999 MsG0580024140.01.T01:CDS
ACAAGACCACGCCTTGGTTC+AGG 0.487317 5:-1287118 MsG0580024140.01.T01:CDS
TGTGGTTATGGATTGGTGGG+AGG 0.487836 5:+1287293 None:intergenic
GGATAGGGGAGCTTAGTTGT+GGG 0.489110 5:+1287154 None:intergenic
AGGATAGGGGAGCTTAGTTG+TGG 0.499056 5:+1287153 None:intergenic
AAACATTTCACATTTGGTCC+TGG 0.500687 5:-1287243 MsG0580024140.01.T01:CDS
TGTGTTGAGCTGTGAAGGAT+AGG 0.506046 5:+1287138 None:intergenic
ACAATCAGAACGAGGGTAAG+AGG 0.509900 5:+1286835 None:intergenic
GTGCCTCATGACTGTAAGCT+TGG 0.510320 5:-1286962 MsG0580024140.01.T01:CDS
ACTTGTGGTTATGGATTGGT+GGG 0.512378 5:+1287290 None:intergenic
GTAAGGGGTGGGCATCGGGC+GGG 0.517410 5:-1288923 MsG0580024140.01.T01:intron
GACTTGTGGTTATGGATTGG+TGG 0.519477 5:+1287289 None:intergenic
TGCGGACAAACAACTGCGTA+AGG 0.525128 5:-1288940 MsG0580024140.01.T01:CDS
AGTTAAGGGTGTAAATTGAA+GGG 0.533055 5:+1287195 None:intergenic
CGGACAAACAACTGCGTAAG+GGG 0.540765 5:-1288938 MsG0580024140.01.T01:CDS
GCATCACGTCTGCTTATCTC+GGG 0.549140 5:+1288960 None:intergenic
TAAGACTTGTGGTTATGGAT+TGG 0.553012 5:+1287286 None:intergenic
TGTGAGGTCTTCTTATAAAG+TGG 0.558437 5:-1287071 MsG0580024140.01.T01:CDS
GTGTTGAGCTGTGAAGGATA+GGG 0.558773 5:+1287139 None:intergenic
TGGTGATTGAGCATGAGGGC+AGG 0.561890 5:-1287051 MsG0580024140.01.T01:CDS
ACAAACAACTGCGTAAGGGG+TGG 0.564907 5:-1288935 MsG0580024140.01.T01:CDS
TAAAGTGGTGATTGAGCATG+AGG 0.567310 5:-1287056 MsG0580024140.01.T01:CDS
TGATGAAACCATATTATCAA+AGG 0.569530 5:-1287005 MsG0580024140.01.T01:CDS
TCTCAACACAACGCAATACA+AGG 0.573623 5:+1288995 None:intergenic
GGTCTTGTGTTGAGCTGTGA+AGG 0.575030 5:+1287133 None:intergenic
GTTTCTGAGATGTGGTTGAA+AGG 0.581845 5:+1287262 None:intergenic
CTCAACACAAGACCACGCCT+TGG 0.584774 5:-1287124 MsG0580024140.01.T01:CDS
TCATATTAAGGTTATATCAG+AGG 0.588007 5:-1286813 MsG0580024140.01.T01:CDS
CGAGATAAGCAGACGTGATG+CGG 0.595630 5:-1288958 MsG0580024140.01.T01:CDS
CAAACAACTGCGTAAGGGGT+GGG 0.599618 5:-1288934 MsG0580024140.01.T01:CDS
GTGCCACTGATAAGACGAGC+AGG 0.599960 5:+1286923 None:intergenic
TGTGAAATGTTTCTGAGATG+TGG 0.601962 5:+1287254 None:intergenic
TCACAGTGAAAGTGAGTGAT+GGG 0.611048 5:+1287089 None:intergenic
GCGGACAAACAACTGCGTAA+GGG 0.615385 5:-1288939 MsG0580024140.01.T01:CDS
GGCACAGTTGATCAGAGTGA+TGG 0.619808 5:-1286905 MsG0580024140.01.T01:CDS
TGTTGAGCTGTGAAGGATAG+GGG 0.621697 5:+1287140 None:intergenic
CTCACAGTGAAAGTGAGTGA+TGG 0.635887 5:+1287088 None:intergenic
TGTCCTGCTCGTCTTATCAG+TGG 0.649957 5:-1286926 MsG0580024140.01.T01:CDS
AAGCTTACAGTCATGAGGCA+CGG 0.652590 5:+1286964 None:intergenic
GATAGGGGAGCTTAGTTGTG+GGG 0.665612 5:+1287155 None:intergenic
AGTGATGATGTTGTAGAGCG+TGG 0.677618 5:-1286875 MsG0580024140.01.T01:CDS
ACTCCAAGCTTACAGTCATG+AGG 0.678735 5:+1286959 None:intergenic
GGTTGAAAGGATAAGACTTG+TGG 0.688133 5:+1287275 None:intergenic
TAATATGACAATCAGAACGA+GGG 0.699912 5:+1286828 None:intergenic
CATCACTCACTTTCACTGTG+AGG 0.704299 5:-1287087 MsG0580024140.01.T01:CDS
AAAGTGGTGATTGAGCATGA+GGG 0.724790 5:-1287055 MsG0580024140.01.T01:CDS
TGTGAACCTGAACCAAGGCG+TGG 0.725548 5:+1287112 None:intergenic
TTAATATGACAATCAGAACG+AGG 0.733351 5:+1286827 None:intergenic
ATGGGTGTGAACCTGAACCA+AGG 0.761073 5:+1287107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAACC+AGG - Chr5:1287056-1287075 MsG0580024140.01.T01:CDS 10.0%
!! ATATATTATAGAAATAGAAA+TGG - Chr5:1287858-1287877 MsG0580024140.01.T01:intron 10.0%
!!! CTATTTCTATAATATATATA+AGG + Chr5:1287855-1287874 None:intergenic 10.0%
!! AATGCATTTATTAGTATAAT+AGG + Chr5:1287501-1287520 None:intergenic 15.0%
!! TAAATCATAGAATATTTACA+CGG - Chr5:1287937-1287956 MsG0580024140.01.T01:intron 15.0%
!! TATTATACTAATAAATGCAT+TGG - Chr5:1287500-1287519 MsG0580024140.01.T01:intron 15.0%
!!! TCTGTATTTTTATTTTTTGT+TGG + Chr5:1287123-1287142 None:intergenic 15.0%
!!! TTTTATGTCATAAGTTATTT+TGG + Chr5:1288017-1288036 None:intergenic 15.0%
!! AAATTGAAATACATAGGATA+TGG + Chr5:1288400-1288419 None:intergenic 20.0%
!! AATTAATACATACTCCATAT+AGG + Chr5:1287475-1287494 None:intergenic 20.0%
!! ATATAAATATTCATCAGTAC+TGG + Chr5:1287618-1287637 None:intergenic 20.0%
!! CTGATGAATATTTATATTTG+CGG - Chr5:1287621-1287640 MsG0580024140.01.T01:intron 20.0%
!! TAGTGAAAATTGAAATACAT+AGG + Chr5:1288406-1288425 None:intergenic 20.0%
!! TATATAAGGTGTATAATTGT+TGG + Chr5:1287841-1287860 None:intergenic 20.0%
!! TGATGAATATTTATATTTGC+GGG - Chr5:1287622-1287641 MsG0580024140.01.T01:intron 20.0%
!!! AATTTCATTGTGATTTTGTA+TGG - Chr5:1287217-1287236 MsG0580024140.01.T01:CDS 20.0%
!!! CTCAGTTAAAAAATATTTTG+TGG + Chr5:1288131-1288150 None:intergenic 20.0%
!!! CTCTCTTTTATTTTCTTATA+GGG - Chr5:1287293-1287312 MsG0580024140.01.T01:CDS 20.0%
!!! TATAACAAGTTTGCTTTTTA+TGG + Chr5:1288197-1288216 None:intergenic 20.0%
!!! TCTCTCTTTTATTTTCTTAT+AGG - Chr5:1287292-1287311 MsG0580024140.01.T01:CDS 20.0%
!!! TCTCTTTTATTTTCTTATAG+GGG - Chr5:1287294-1287313 MsG0580024140.01.T01:CDS 20.0%
! AATTAGAGAGAGAAGAATAA+TGG + Chr5:1287201-1287220 None:intergenic 25.0%
! ACTCGAAATATGCAATTTAT+TGG + Chr5:1288370-1288389 None:intergenic 25.0%
! TCATATTAAGGTTATATCAG+AGG - Chr5:1288958-1288977 MsG0580024140.01.T01:CDS 25.0%
! TGACCTACAAAATAATATCA+TGG - Chr5:1288249-1288268 MsG0580024140.01.T01:intron 25.0%
! TGATGAAACCATATTATCAA+AGG - Chr5:1288766-1288785 MsG0580024140.01.T01:intron 25.0%
! TTGCAAACAATCTTTGTTAA+TGG + Chr5:1287027-1287046 None:intergenic 25.0%
! TTGTGTACTATGTCTATAAT+AGG - Chr5:1287362-1287381 MsG0580024140.01.T01:intron 25.0%
!! GTAAACACTTTTAACGAAAT+TGG + Chr5:1287967-1287986 None:intergenic 25.0%
!! TTTGATAATATGGTTTCATC+AGG + Chr5:1288767-1288786 None:intergenic 25.0%
!!! AGACCATGATATTATTTTGT+AGG + Chr5:1288255-1288274 None:intergenic 25.0%
!!! CTCTTTTATTTTCTTATAGG+GGG - Chr5:1287295-1287314 MsG0580024140.01.T01:CDS 25.0%
!!! GTGTGTTATAGCTTTTATTT+TGG + Chr5:1287581-1287600 None:intergenic 25.0%
ACGGTTCATAAATAAGAAGA+AGG + Chr5:1288061-1288080 None:intergenic 30.0%
ATTCACCATTCTCAAAAGTA+CGG + Chr5:1288080-1288099 None:intergenic 30.0%
CTAAACCGAAACAGAAAAAT+GGG + Chr5:1286944-1286963 None:intergenic 30.0%
TAATATGACAATCAGAACGA+GGG + Chr5:1288946-1288965 None:intergenic 30.0%
TCACTATTTACTCTTCTACT+AGG - Chr5:1288420-1288439 MsG0580024140.01.T01:intron 30.0%
TCGTTCTGATTGTCATATTA+AGG - Chr5:1288946-1288965 MsG0580024140.01.T01:CDS 30.0%
TCTAAACCGAAACAGAAAAA+TGG + Chr5:1286945-1286964 None:intergenic 30.0%
TCTCAGAAACATTTCACATT+TGG - Chr5:1288522-1288541 MsG0580024140.01.T01:intron 30.0%
TGAATATTTATATTTGCGGG+CGG - Chr5:1287625-1287644 MsG0580024140.01.T01:intron 30.0%
TTAATATGACAATCAGAACG+AGG + Chr5:1288947-1288966 None:intergenic 30.0%
TTACCTATCGTTTACCATTA+AGG - Chr5:1287983-1288002 MsG0580024140.01.T01:intron 30.0%
! AACCATATTATCAAAGGCAT+TGG - Chr5:1288772-1288791 MsG0580024140.01.T01:intron 30.0%
! AGTTAAGGGTGTAAATTGAA+GGG + Chr5:1288579-1288598 None:intergenic 30.0%
! TTTTTCTGTTTCGGTTTAGA+CGG - Chr5:1286945-1286964 MsG0580024140.01.T01:CDS 30.0%
!!! CATTAGTTTTGGTTTTACGA+TGG + Chr5:1287437-1287456 None:intergenic 30.0%
AAACATTTCACATTTGGTCC+TGG - Chr5:1288528-1288547 MsG0580024140.01.T01:intron 35.0%
AAAGATTGTTTGCAAGCTCA+CGG - Chr5:1287032-1287051 MsG0580024140.01.T01:CDS 35.0%
AAGGATAAGACTTGTGGTTA+TGG + Chr5:1288493-1288512 None:intergenic 35.0%
ACACATTTGCGGTTTAGATA+GGG + Chr5:1287701-1287720 None:intergenic 35.0%
ACATACTCCATATAGGAAAG+AGG + Chr5:1287468-1287487 None:intergenic 35.0%
AGATATCAGATTGTTGATCC+TGG + Chr5:1287077-1287096 None:intergenic 35.0%
AGATTTGAGAGGAAAGAAAC+GGG - Chr5:1287150-1287169 MsG0580024140.01.T01:CDS 35.0%
GAATATTTATATTTGCGGGC+GGG - Chr5:1287626-1287645 MsG0580024140.01.T01:intron 35.0%
GAGATTTGAGAGGAAAGAAA+CGG - Chr5:1287149-1287168 MsG0580024140.01.T01:CDS 35.0%
GTTCCATCTACATGAAAAGA+AGG - Chr5:1287242-1287261 MsG0580024140.01.T01:CDS 35.0%
TAAGACTTGTGGTTATGGAT+TGG + Chr5:1288488-1288507 None:intergenic 35.0%
TGTGAGGTCTTCTTATAAAG+TGG - Chr5:1288700-1288719 MsG0580024140.01.T01:intron 35.0%
TTCTGTCTGAAGAGAGTTAA+GGG + Chr5:1288593-1288612 None:intergenic 35.0%
! GAGTTAAGGGTGTAAATTGA+AGG + Chr5:1288580-1288599 None:intergenic 35.0%
! GTCCAATGCCTTTGATAATA+TGG + Chr5:1288777-1288796 None:intergenic 35.0%
! TCTCCTTCTTTTCATGTAGA+TGG + Chr5:1287248-1287267 None:intergenic 35.0%
! TTTTCTGTTTCGGTTTAGAC+GGG - Chr5:1286946-1286965 MsG0580024140.01.T01:CDS 35.0%
!! AGGATAGGCATCATTAGTTT+TGG + Chr5:1287448-1287467 None:intergenic 35.0%
!! ATGAACCGTACTTTTGAGAA+TGG - Chr5:1288072-1288091 MsG0580024140.01.T01:intron 35.0%
!! TGTGAAATGTTTCTGAGATG+TGG + Chr5:1288520-1288539 None:intergenic 35.0%
AAACAGAAAAATGGGCAGTG+AGG + Chr5:1286936-1286955 None:intergenic 40.0%
AAACCGCAAATGTGTGTTGT+AGG - Chr5:1287706-1287725 MsG0580024140.01.T01:intron 40.0%
AAAGTGGTGATTGAGCATGA+GGG - Chr5:1288716-1288735 MsG0580024140.01.T01:intron 40.0%
AACAGAAAAATGGGCAGTGA+GGG + Chr5:1286935-1286954 None:intergenic 40.0%
ACTGTGTGACAGTGACTTTA+CGG + Chr5:1287534-1287553 None:intergenic 40.0%
CACACATTTGCGGTTTAGAT+AGG + Chr5:1287702-1287721 None:intergenic 40.0%
CAGAGAAGATGAGATTTGAG+AGG - Chr5:1287139-1287158 MsG0580024140.01.T01:CDS 40.0%
CGACCTTAATGGTAAACGAT+AGG + Chr5:1287989-1288008 None:intergenic 40.0%
CTCCATATAGGAAAGAGGAT+AGG + Chr5:1287463-1287482 None:intergenic 40.0%
CTTCTGTCTGAAGAGAGTTA+AGG + Chr5:1288594-1288613 None:intergenic 40.0%
GAACACCAAGCACAAAAACA+TGG - Chr5:1288550-1288569 MsG0580024140.01.T01:intron 40.0%
GGTTGAAAGGATAAGACTTG+TGG + Chr5:1288499-1288518 None:intergenic 40.0%
TAAAGTGGTGATTGAGCATG+AGG - Chr5:1288715-1288734 MsG0580024140.01.T01:intron 40.0%
TCACAGTGAAAGTGAGTGAT+GGG + Chr5:1288685-1288704 None:intergenic 40.0%
TCGTTTACCATTAAGGTCGT+AGG - Chr5:1287990-1288009 MsG0580024140.01.T01:intron 40.0%
TCTCAACACAACGCAATACA+AGG + Chr5:1286779-1286798 None:intergenic 40.0%
TGCCTATCCTCTTTCCTATA+TGG - Chr5:1287458-1287477 MsG0580024140.01.T01:intron 40.0%
! GGTTTTACGATGGAAAGTTC+TGG + Chr5:1287427-1287446 None:intergenic 40.0%
! TTTTGGACCTACGACCTTAA+TGG + Chr5:1288000-1288019 None:intergenic 40.0%
!! ACTTGTGGTTATGGATTGGT+GGG + Chr5:1288484-1288503 None:intergenic 40.0%
!! CACTGCCCATTTTTCTGTTT+CGG - Chr5:1286936-1286955 MsG0580024140.01.T01:CDS 40.0%
!! CTACTAGGCTCTAAATTGTC+AGG - Chr5:1288435-1288454 MsG0580024140.01.T01:intron 40.0%
!! GTTTCTGAGATGTGGTTGAA+AGG + Chr5:1288512-1288531 None:intergenic 40.0%
!! TTATCAAAGGCATTGGACTC+TGG - Chr5:1288779-1288798 MsG0580024140.01.T01:intron 40.0%
AAGCTTACAGTCATGAGGCA+CGG + Chr5:1288810-1288829 None:intergenic 45.0%
ACAATCAGAACGAGGGTAAG+AGG + Chr5:1288939-1288958 None:intergenic 45.0%
ACAGAAAAATGGGCAGTGAG+GGG + Chr5:1286934-1286953 None:intergenic 45.0%
ACTCCAAGCTTACAGTCATG+AGG + Chr5:1288815-1288834 None:intergenic 45.0%
CATCACTCACTTTCACTGTG+AGG - Chr5:1288684-1288703 MsG0580024140.01.T01:intron 45.0%
CCGGTCCGAAAAAAGGAAAA+CGG + Chr5:1287756-1287775 None:intergenic 45.0%
CGGTCCGAAAAAAGGAAAAC+GGG + Chr5:1287755-1287774 None:intergenic 45.0%
CTCACAGTGAAAGTGAGTGA+TGG + Chr5:1288686-1288705 None:intergenic 45.0%
GGAAAACGGGCGGTTTAAAA+CGG + Chr5:1287742-1287761 None:intergenic 45.0%
GGTCCTACAACACACATTTG+CGG + Chr5:1287712-1287731 None:intergenic 45.0%
GTGTTGAGCTGTGAAGGATA+GGG + Chr5:1288635-1288654 None:intergenic 45.0%
TCCGAAAAAAGGAAAACGGG+CGG + Chr5:1287752-1287771 None:intergenic 45.0%
TGTGTTGAGCTGTGAAGGAT+AGG + Chr5:1288636-1288655 None:intergenic 45.0%
TGTTGAGCTGTGAAGGATAG+GGG + Chr5:1288634-1288653 None:intergenic 45.0%
TTCTTATAGGGGGAAGTTGC+AGG - Chr5:1287305-1287324 MsG0580024140.01.T01:CDS 45.0%
! ACCGCCCGTTTTCCTTTTTT+CGG - Chr5:1287748-1287767 MsG0580024140.01.T01:intron 45.0%
! AGTGATGATGTTGTAGAGCG+TGG - Chr5:1288896-1288915 MsG0580024140.01.T01:intron 45.0%
! GAAAACGGGCGGTTTAAAAC+GGG + Chr5:1287741-1287760 None:intergenic 45.0%
! TGTTTCGGTTTAGACGGGTT+CGG - Chr5:1286951-1286970 MsG0580024140.01.T01:CDS 45.0%
! TTTATATTTGCGGGCGGGTT+CGG - Chr5:1287631-1287650 MsG0580024140.01.T01:intron 45.0%
!! GACTTGTGGTTATGGATTGG+TGG + Chr5:1288485-1288504 None:intergenic 45.0%
!! GGTTGCCATGTTTTTGTGCT+TGG + Chr5:1288558-1288577 None:intergenic 45.0%
!!! CCGTTTTCCTTTTTTCGGAC+CGG - Chr5:1287753-1287772 MsG0580024140.01.T01:intron 45.0%
!!! CGTTTTCCTTTTTTCGGACC+GGG - Chr5:1287754-1287773 MsG0580024140.01.T01:intron 45.0%
!!! GTTTTTGTGCTTGGTGTTCC+AGG + Chr5:1288549-1288568 None:intergenic 45.0%
ACAAACAACTGCGTAAGGGG+TGG - Chr5:1286836-1286855 MsG0580024140.01.T01:CDS 50.0%
ACCCCTATGCGTACTACAGA+CGG - Chr5:1287812-1287831 MsG0580024140.01.T01:intron 50.0%
AGCCGTCTGTAGTACGCATA+GGG + Chr5:1287817-1287836 None:intergenic 50.0%
AGGATAGGGGAGCTTAGTTG+TGG + Chr5:1288621-1288640 None:intergenic 50.0%
ATGGGTGTGAACCTGAACCA+AGG + Chr5:1288667-1288686 None:intergenic 50.0%
CAAACAACTGCGTAAGGGGT+GGG - Chr5:1286837-1286856 MsG0580024140.01.T01:CDS 50.0%
CGAGATAAGCAGACGTGATG+CGG - Chr5:1286813-1286832 MsG0580024140.01.T01:CDS 50.0%
CGCATCACGTCTGCTTATCT+CGG + Chr5:1286815-1286834 None:intergenic 50.0%
CGGACAAACAACTGCGTAAG+GGG - Chr5:1286833-1286852 MsG0580024140.01.T01:CDS 50.0%
CGGTTTAGATAGGGTCCACA+CGG + Chr5:1287692-1287711 None:intergenic 50.0%
GAAAGAAACGGGAGAGGTTG+AGG - Chr5:1287161-1287180 MsG0580024140.01.T01:CDS 50.0%
GATAGGGGAGCTTAGTTGTG+GGG + Chr5:1288619-1288638 None:intergenic 50.0%
GCATCACGTCTGCTTATCTC+GGG + Chr5:1286814-1286833 None:intergenic 50.0%
GCGGACAAACAACTGCGTAA+GGG - Chr5:1286832-1286851 MsG0580024140.01.T01:CDS 50.0%
GGATAGGGGAGCTTAGTTGT+GGG + Chr5:1288620-1288639 None:intergenic 50.0%
GGCACAGTTGATCAGAGTGA+TGG - Chr5:1288866-1288885 MsG0580024140.01.T01:intron 50.0%
GGTTCGGGTAACACAGGTTA+CGG - Chr5:1286967-1286986 MsG0580024140.01.T01:CDS 50.0%
GGTTTAGATAGGGTCCACAC+GGG + Chr5:1287691-1287710 None:intergenic 50.0%
GTGCCTCATGACTGTAAGCT+TGG - Chr5:1288809-1288828 MsG0580024140.01.T01:intron 50.0%
GTGTGACAGTGACTTTACGG+TGG + Chr5:1287531-1287550 None:intergenic 50.0%
GTTCGGGTAACACAGGTTAC+GGG - Chr5:1286968-1286987 MsG0580024140.01.T01:CDS 50.0%
TAGCCGTCTGTAGTACGCAT+AGG + Chr5:1287818-1287837 None:intergenic 50.0%
TGAGAGGAAAGAAACGGGAG+AGG - Chr5:1287155-1287174 MsG0580024140.01.T01:CDS 50.0%
TGCGGACAAACAACTGCGTA+AGG - Chr5:1286831-1286850 MsG0580024140.01.T01:CDS 50.0%
TGTCCTGCTCGTCTTATCAG+TGG - Chr5:1288845-1288864 MsG0580024140.01.T01:intron 50.0%
! AACACAGGTTACGGGTTACG+CGG - Chr5:1286976-1286995 MsG0580024140.01.T01:CDS 50.0%
! GCGGTTTAAAACGGGTCTTC+GGG + Chr5:1287733-1287752 None:intergenic 50.0%
! GGCGGTTTAAAACGGGTCTT+CGG + Chr5:1287734-1287753 None:intergenic 50.0%
! GGTCTTGTGTTGAGCTGTGA+AGG + Chr5:1288641-1288660 None:intergenic 50.0%
! GTTTCGGTTTAGACGGGTTC+GGG - Chr5:1286952-1286971 MsG0580024140.01.T01:CDS 50.0%
! TTATATTTGCGGGCGGGTTC+GGG - Chr5:1287632-1287651 MsG0580024140.01.T01:intron 50.0%
!! GTGGTTATGGATTGGTGGGA+GGG + Chr5:1288480-1288499 None:intergenic 50.0%
!! TGTGGTTATGGATTGGTGGG+AGG + Chr5:1288481-1288500 None:intergenic 50.0%
!!! TTTTTTCGGACCGGGTTGTG+CGG - Chr5:1287762-1287781 MsG0580024140.01.T01:intron 50.0%
ACAAGACCACGCCTTGGTTC+AGG - Chr5:1288653-1288672 MsG0580024140.01.T01:intron 55.0%
AGAAACGGGAGAGGTTGAGG+AGG - Chr5:1287164-1287183 MsG0580024140.01.T01:CDS 55.0%
AGGGGTCCAATTGTTCCACC+CGG - Chr5:1287660-1287679 MsG0580024140.01.T01:intron 55.0%
CTCAACACAAGACCACGCCT+TGG - Chr5:1288647-1288666 MsG0580024140.01.T01:intron 55.0%
GCACAACCCGGTCCGAAAAA+AGG + Chr5:1287763-1287782 None:intergenic 55.0%
GCCGTCTGTAGTACGCATAG+GGG + Chr5:1287816-1287835 None:intergenic 55.0%
GGGTCTGTATATGTCACCCG+CGG + Chr5:1286914-1286933 None:intergenic 55.0%
GGTCTGTATATGTCACCCGC+GGG + Chr5:1286913-1286932 None:intergenic 55.0%
GGTGGAACAATTGGACCCCT+CGG + Chr5:1287660-1287679 None:intergenic 55.0%
GTCTGTAGTACGCATAGGGG+TGG + Chr5:1287813-1287832 None:intergenic 55.0%
TGGTGATTGAGCATGAGGGC+AGG - Chr5:1288720-1288739 MsG0580024140.01.T01:intron 55.0%
TGTATATGTCACCCGCGGGT+TGG + Chr5:1286909-1286928 None:intergenic 55.0%
TGTGAACCTGAACCAAGGCG+TGG + Chr5:1288662-1288681 None:intergenic 55.0%
TTAGATAGGGTCCACACGGG+CGG + Chr5:1287688-1287707 None:intergenic 55.0%
! ACACAGGTTACGGGTTACGC+GGG - Chr5:1286977-1286996 MsG0580024140.01.T01:CDS 55.0%
! GTGCCACTGATAAGACGAGC+AGG + Chr5:1288851-1288870 None:intergenic 55.0%
! GTTACGCGGGTCGGTTTATG+CGG - Chr5:1286990-1287009 MsG0580024140.01.T01:CDS 55.0%
! TAGACGGGTTCGGGTAACAC+AGG - Chr5:1286961-1286980 MsG0580024140.01.T01:CDS 55.0%
! TTACGCGGGTCGGTTTATGC+GGG - Chr5:1286991-1287010 MsG0580024140.01.T01:CDS 55.0%
!! TTTTTCGGACCGGGTTGTGC+GGG - Chr5:1287763-1287782 MsG0580024140.01.T01:intron 55.0%
ACTGCGTAAGGGGTGGGCAT+CGG - Chr5:1286843-1286862 MsG0580024140.01.T01:CDS 60.0%
GGGAGAGGTTGAGGAGGAAG+TGG - Chr5:1287170-1287189 MsG0580024140.01.T01:CDS 60.0%
TAGATAGGGTCCACACGGGC+GGG + Chr5:1287687-1287706 None:intergenic 60.0%
! AGGTTACGGGTTACGCGGGT+CGG - Chr5:1286981-1287000 MsG0580024140.01.T01:CDS 60.0%
CCGAGGTAACCCGCACAACC+CGG + Chr5:1287775-1287794 None:intergenic 65.0%
CTGCGTAAGGGGTGGGCATC+GGG - Chr5:1286844-1286863 MsG0580024140.01.T01:CDS 65.0%
GCGGGTCCGGGTGGAACAAT+TGG + Chr5:1287669-1287688 None:intergenic 65.0%
GGACAAAAACCCGCAGCCCG+AGG + Chr5:1287792-1287811 None:intergenic 65.0%
! CCGGGTTGTGCGGGTTACCT+CGG - Chr5:1287772-1287791 MsG0580024140.01.T01:intron 65.0%
! CGGGTTGTGCGGGTTACCTC+GGG - Chr5:1287773-1287792 MsG0580024140.01.T01:intron 65.0%
!! ATGTCACCCGCGGGTTGGAC+TGG + Chr5:1286904-1286923 None:intergenic 65.0%
!! TGTCACCCGCGGGTTGGACT+GGG + Chr5:1286903-1286922 None:intergenic 65.0%
ACCCACCCAGTCCAACCCGC+GGG - Chr5:1286895-1286914 MsG0580024140.01.T01:CDS 70.0%
CACCCACCCAGTCCAACCCG+CGG - Chr5:1286894-1286913 MsG0580024140.01.T01:CDS 70.0%
! GTGCGGGTTACCTCGGGCTG+CGG - Chr5:1287779-1287798 MsG0580024140.01.T01:intron 70.0%
! TGCGGGTTACCTCGGGCTGC+GGG - Chr5:1287780-1287799 MsG0580024140.01.T01:intron 70.0%
!! ACCCGCGGGTTGGACTGGGT+GGG + Chr5:1286899-1286918 None:intergenic 70.0%
!! CGTAAGGGGTGGGCATCGGG+CGG - Chr5:1286847-1286866 MsG0580024140.01.T01:CDS 70.0%
!! GGTGGGCATCGGGCGGGTTT+GGG - Chr5:1286854-1286873 MsG0580024140.01.T01:CDS 70.0%
!! GTAAGGGGTGGGCATCGGGC+GGG - Chr5:1286848-1286867 MsG0580024140.01.T01:CDS 70.0%
AGGGTCCACACGGGCGGGTC+CGG + Chr5:1287682-1287701 None:intergenic 75.0%
! CGGGCGGGTTTGGGCGGGTT+CGG - Chr5:1286863-1286882 MsG0580024140.01.T01:CDS 75.0%
! GGCATCGGGCGGGTTTGGGC+GGG - Chr5:1286858-1286877 MsG0580024140.01.T01:CDS 75.0%
! GGGCGGGTTTGGGCGGGTTC+GGG - Chr5:1286864-1286883 MsG0580024140.01.T01:CDS 75.0%
!! CACCCGCGGGTTGGACTGGG+TGG + Chr5:1286900-1286919 None:intergenic 75.0%
!! CGGGCGGGTTCGGGTACCGA+GGG - Chr5:1287641-1287660 MsG0580024140.01.T01:intron 75.0%
!! GGGCATCGGGCGGGTTTGGG+CGG - Chr5:1286857-1286876 MsG0580024140.01.T01:CDS 75.0%
!! GGGCGGGTTCGGGTACCGAG+GGG - Chr5:1287642-1287661 MsG0580024140.01.T01:intron 75.0%
!! GGGTGGGCATCGGGCGGGTT+TGG - Chr5:1286853-1286872 MsG0580024140.01.T01:CDS 75.0%
! GGGTCCACACGGGCGGGTCC+GGG + Chr5:1287681-1287700 None:intergenic 80.0%
! TCCACACGGGCGGGTCCGGG+TGG + Chr5:1287678-1287697 None:intergenic 80.0%
! TCCACCCGGACCCGCCCGTG+TGG - Chr5:1287674-1287693 MsG0580024140.01.T01:intron 80.0%
!! GCGGGCGGGTTCGGGTACCG+AGG - Chr5:1287640-1287659 MsG0580024140.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1286772 1289021 1286772 ID=MsG0580024140.01;Name=MsG0580024140.01
Chr5 mRNA 1286772 1289021 1286772 ID=MsG0580024140.01.T01;Parent=MsG0580024140.01;Name=MsG0580024140.01.T01;_AED=0.56;_eAED=0.65;_QI=0|0|0|0.5|1|1|2|0|220
Chr5 exon 1288924 1289021 1288924 ID=MsG0580024140.01.T01:exon:389;Parent=MsG0580024140.01.T01
Chr5 exon 1286772 1287336 1286772 ID=MsG0580024140.01.T01:exon:388;Parent=MsG0580024140.01.T01
Chr5 CDS 1288924 1289021 1288924 ID=MsG0580024140.01.T01:cds;Parent=MsG0580024140.01.T01
Chr5 CDS 1286772 1287336 1286772 ID=MsG0580024140.01.T01:cds;Parent=MsG0580024140.01.T01
Gene Sequence

>MsG0580024140.01.T01

ATGACCTTGTATTGCGTTGTGTTGAGAAATGATGATGAACCCGAGATAAGCAGACGTGATGCGGACAAACAACTGCGTAAGGGGTGGGCATCGGGCGGGTGTGTACAAAAGAGTAAAGCCCTCCCACCAATCCATAACCACAAGTCTTATCCTTTCAACCACATCTCAGAAACATTTCACATTTGGTCCTGGAACACCAAGCACAAAAACATGGCAACCCTTCAATTTACACCCTTAACTCTCTTCAGACAGAAGCACCCCACAACTAAGCTCCCCTATCCTTCACAGCTCAACACAAGACCACGCCTTGGTTCAGGTTCACACCCATCACTCACTTTCACTGTGAGGTCTTCTTATAAAGTGGTGATTGAGCATGAGGGCAGGACTACACAGCTTGAAGTTGAACCTGATGAAACCATATTATCAAAGGCATTGGACTCTGGTTTGTCCGTGCCTCATGACTGTAAGCTTGGAGTTTGCATGACTTGTCCTGCTCGTCTTATCAGTGGCACAGTTGATCAGAGTGATGGTATGCTCAGTGATGATGTTGTAGAGCGTGGCTATGCACTCTTGTGTGCCTCTTACCCTCGTTCTGATTGTCATATTAAGGTTATATCAGAGGATGAGCTACTCTCAATGCAGTTAGCTACAGCCAATGACTAA

Protein sequence

>MsG0580024140.01.T01

MTLYCVVLRNDDEPEISRRDADKQLRKGWASGGCVQKSKALPPIHNHKSYPFNHISETFHIWSWNTKHKNMATLQFTPLTLFRQKHPTTKLPYPSQLNTRPRLGSGSHPSLTFTVRSSYKVVIEHEGRTTQLEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCHIKVISEDELLSMQLATAND*