AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031829.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031829.01.T01 MTR_6g033525 91.579 380 21 4 2 371 1 379 0.0 674
MsG0680031829.01.T01 MTR_6g033525 90.541 296 18 3 2 287 1 296 0.0 511
MsG0680031829.01.T01 MTR_4g087250 27.451 204 134 4 102 304 192 382 2.52e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031829.01.T01 AT1G34380 66.202 287 91 3 46 332 65 345 1.07e-140 404
MsG0680031829.01.T01 AT1G34380 67.704 257 77 3 46 302 65 315 4.58e-127 368
MsG0680031829.01.T01 AT1G34380 61.202 183 65 3 46 228 65 241 6.87e-76 236
MsG0680031829.01.T01 AT3G52050 26.667 270 165 8 72 340 160 397 2.07e-16 80.5
MsG0680031829.01.T01 AT3G52050 26.667 270 165 8 72 340 137 374 2.24e-16 80.5
MsG0680031829.01.T01 AT3G52050 26.667 270 165 8 72 340 137 374 2.24e-16 80.5
MsG0680031829.01.T01 AT3G52050 26.182 275 166 8 72 340 137 380 5.12e-16 79.3
MsG0680031829.01.T01 AT3G52050 29.146 199 121 5 72 269 160 339 6.22e-16 79.0
MsG0680031829.01.T01 AT3G52050 25.833 240 153 6 102 340 200 415 1.42e-15 78.2
MsG0680031829.01.T01 AT3G52050 25.833 240 153 6 102 340 177 392 1.83e-15 77.8
MsG0680031829.01.T01 AT3G52050 25.833 240 153 6 102 340 177 392 1.83e-15 77.8

Find 106 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTACCTTGTTCAAATATT+TGG 0.104207 6:-27537143 MsG0680031829.01.T01:CDS
ACAAAATTCCTCATAGTTAT+TGG 0.152917 6:+27537106 None:intergenic
TTTATTCTATTATTATTAAA+TGG 0.272019 6:-27536760 MsG0680031829.01.T01:three_prime_UTR
CAGGTAACAGAACCAGTTTC+TGG 0.284484 6:-27536516 None:intergenic
CGAGAAATAAACCAACTTCT+AGG 0.290335 6:+27536643 None:intergenic
GAAGTTGCTTCCTTCTTATA+AGG 0.292216 6:-27541007 MsG0680031829.01.T01:CDS
CAACATCTCGTCCCTAGTTT+TGG 0.294874 6:-27538135 MsG0680031829.01.T01:CDS
TCGGCTTGGTGGTGAAAGTT+TGG 0.299248 6:+27536814 None:intergenic
ATTATAAATATAGACTAAAA+AGG 0.308674 6:-27536729 MsG0680031829.01.T01:three_prime_UTR
AAAGAGGGAGTGAGTATAGA+AGG 0.329465 6:-27541029 MsG0680031829.01.T01:CDS
AGTTGCTTAAAATCCTTATC+AGG 0.333724 6:+27538921 None:intergenic
ACTAACAATTTGCCAGAAAC+TGG 0.344474 6:+27536504 None:intergenic
CGGCTTGGTGGTGAAAGTTT+GGG 0.363683 6:+27536815 None:intergenic
GTTCATTGATAAAGAATAAC+AGG 0.370181 6:-27536535 MsG0680031829.01.T01:three_prime_UTR
CTACAACATCATCAGCTTCA+TGG 0.382590 6:+27538997 None:intergenic
AGGCAAGAACTTCATAGTTC+CGG 0.388172 6:+27537983 None:intergenic
AGTAATCAGCGTACTTTGTA+AGG 0.394664 6:+27538010 None:intergenic
CTGAACAAGTTCTCAAGAAA+GGG 0.400382 6:-27538965 MsG0680031829.01.T01:CDS
AATCAAAACAACAAAGCAAA+AGG 0.402997 6:-27541188 MsG0680031829.01.T01:CDS
GATGAAGTTGACGGTGTTCC+TGG 0.408426 6:-27538162 MsG0680031829.01.T01:CDS
GTAATGTCTCGCAGTGTAGA+AGG 0.412650 6:+27538845 None:intergenic
TCTGAACAAGTTCTCAAGAA+AGG 0.413733 6:-27538966 MsG0680031829.01.T01:CDS
GCTATCTAATTCCTAGAAGT+TGG 0.422231 6:-27536654 MsG0680031829.01.T01:three_prime_UTR
CTCCGATTGGCCTTATAAGA+AGG 0.433159 6:+27540997 None:intergenic
TGGTGGTGAAAGTTTGGGAC+CGG 0.439505 6:+27536820 None:intergenic
ATGAAGTTCTTGCCTTGAAA+AGG 0.444189 6:-27537975 MsG0680031829.01.T01:intron
GTAAGGGCATCCTGTGCATA+TGG 0.446005 6:+27538027 None:intergenic
GAAAGTTATGTAATATTAGT+AGG 0.446291 6:-27536786 MsG0680031829.01.T01:three_prime_UTR
GCGAATGGTGGTGGTGGAAG+TGG 0.449437 6:-27540964 MsG0680031829.01.T01:CDS
CCGGGCGTGTGCTCCTCTCT+AGG 0.453436 6:+27536839 None:intergenic
TTTGTTCCTTCATAACATAA+AGG 0.455799 6:+27541144 None:intergenic
AATTGTGTAGGATGTATTAT+AGG 0.460175 6:-27538186 MsG0680031829.01.T01:intron
CCGCTAGTGGACAGAGGGAT+TGG 0.465566 6:+27536947 None:intergenic
TTAGCAAAATAGTGTAAACT+AGG 0.467630 6:+27541120 None:intergenic
ACTTTCGAGGGTCGGCTTGG+TGG 0.468960 6:+27536803 None:intergenic
CTTTGCTCTGACTTAAATTG+AGG 0.469259 6:+27536921 None:intergenic
GGTGATTGCCTCTCCTGATA+AGG 0.472031 6:-27538934 MsG0680031829.01.T01:CDS
AGTCAGAGCAAAGCTATGTA+TGG 0.472353 6:-27536911 MsG0680031829.01.T01:three_prime_UTR
CTAATATTACATAACTTTCG+AGG 0.476772 6:+27536790 None:intergenic
GTGAATCCTTTATGTTATGA+AGG 0.476874 6:-27541150 MsG0680031829.01.T01:CDS
ATAGAAATCAAATTAGTGTT+GGG 0.480173 6:-27537039 MsG0680031829.01.T01:CDS
TATTAAATGCGGCTGCAGTA+AGG 0.480515 6:-27538062 MsG0680031829.01.T01:CDS
ATATAGGTTATAAAAGTTGA+TGG 0.484115 6:-27539020 MsG0680031829.01.T01:intron
CATAGAAATCAAATTAGTGT+TGG 0.485949 6:-27537040 MsG0680031829.01.T01:CDS
GCAGTCTTCCAACCAAAACT+AGG 0.486952 6:+27538123 None:intergenic
TGTCCCTACACAGGAATTGT+TGG 0.490583 6:-27536886 MsG0680031829.01.T01:three_prime_UTR
ATAACTTTCGAGGGTCGGCT+TGG 0.491713 6:+27536800 None:intergenic
TGTGCTCCTCTCTAGGTCTC+AGG 0.493356 6:+27536846 None:intergenic
TTCCTTCTTATAAGGCCAAT+CGG 0.498255 6:-27540999 MsG0680031829.01.T01:CDS
CTTCTTTCTAACATAAGCAC+TGG 0.500388 6:+27537063 None:intergenic
CTCAAGGATCAACTGATTCG+AGG 0.503611 6:-27536972 MsG0680031829.01.T01:three_prime_UTR
CAAAACTAGGGACGAGATGT+TGG 0.503791 6:+27538136 None:intergenic
CCTAGAGAGGAGCACACGCC+CGG 0.504897 6:-27536839 MsG0680031829.01.T01:three_prime_UTR
GGTGGTGGAAGTGGACATGT+TGG 0.509514 6:-27540955 MsG0680031829.01.T01:CDS
CGGAGAAAATTCGCGGCGAA+TGG 0.510160 6:-27540979 MsG0680031829.01.T01:CDS
ACATAAGCACTGGTGTTAGC+AGG 0.516290 6:+27537073 None:intergenic
ATTACATAACTTTCGAGGGT+CGG 0.518875 6:+27536795 None:intergenic
TAGCAAAATAGTGTAAACTA+GGG 0.523939 6:+27541121 None:intergenic
TTCGCGGCGAATGGTGGTGG+TGG 0.532323 6:-27540970 MsG0680031829.01.T01:CDS
GTGGAAGTGGACATGTTGGA+AGG 0.532401 6:-27540951 MsG0680031829.01.T01:CDS
TAAATTGAGGCTCCCGCTAG+TGG 0.533877 6:+27536934 None:intergenic
AAATTCGCGGCGAATGGTGG+TGG 0.538715 6:-27540973 MsG0680031829.01.T01:CDS
AAAACTTGGTATCCGGCTCA+AGG 0.539308 6:-27536988 MsG0680031829.01.T01:three_prime_UTR
ATCAAAACAACAAAGCAAAA+GGG 0.539615 6:-27541187 MsG0680031829.01.T01:CDS
AAGGACCACCTTTGTAACTC+TGG 0.547659 6:+27538864 None:intergenic
CAATCCCTCTGTCCACTAGC+GGG 0.548252 6:-27536946 MsG0680031829.01.T01:three_prime_UTR
CTTAAAATCCTTATCAGGAG+AGG 0.549400 6:+27538926 None:intergenic
CCAACCATTCCTCATGAAGC+TGG 0.551456 6:+27537200 None:intergenic
CTAAGGCTTAGATCAGATTG+AGG 0.554833 6:+27538801 None:intergenic
GTAAAGAGCCAATAACTATG+AGG 0.560124 6:-27537114 MsG0680031829.01.T01:CDS
TAATATTACATAACTTTCGA+GGG 0.560855 6:+27536791 None:intergenic
GTGCCAACAATTCCTGTGTA+GGG 0.563230 6:+27536883 None:intergenic
GGTGGTGAAAGTTTGGGACC+GGG 0.566603 6:+27536821 None:intergenic
ATTGGAAGCTTTATTAAATG+CGG 0.567595 6:-27538073 MsG0680031829.01.T01:CDS
AGAAAATTCGCGGCGAATGG+TGG 0.568701 6:-27540976 MsG0680031829.01.T01:CDS
GGCCAATCGGAGAAAATTCG+CGG 0.568938 6:-27540986 MsG0680031829.01.T01:CDS
GAATCAGTTGATCCTTGAGC+CGG 0.570358 6:+27536976 None:intergenic
ATGTCCAGCTTCATGAGGAA+TGG 0.570918 6:-27537204 MsG0680031829.01.T01:CDS
TAAGGCTTAGATCAGATTGA+GGG 0.575211 6:+27538802 None:intergenic
TGTGCCAACAATTCCTGTGT+AGG 0.575261 6:+27536882 None:intergenic
CACAGGAATTGTTGGCACAT+GGG 0.581873 6:-27536878 MsG0680031829.01.T01:three_prime_UTR
GATGAAGGGTTGAAGTTGCA+AGG 0.585393 6:+27541285 None:intergenic
TCAAGGATCAACTGATTCGA+GGG 0.586082 6:-27536971 MsG0680031829.01.T01:three_prime_UTR
GGGACGAGATGTTGGATACC+AGG 0.588870 6:+27538144 None:intergenic
CAGTCTTCCAACCAAAACTA+GGG 0.592426 6:+27538124 None:intergenic
GGCTCCCGCTAGTGGACAGA+GGG 0.595767 6:+27536942 None:intergenic
ACACAGGAATTGTTGGCACA+TGG 0.597801 6:-27536879 MsG0680031829.01.T01:three_prime_UTR
CCAGCTTCATGAGGAATGGT+TGG 0.597873 6:-27537200 MsG0680031829.01.T01:CDS
GCGGCTGCAGTAAGGACTGT+GGG 0.598553 6:-27538054 MsG0680031829.01.T01:CDS
CTTCTATAGAAATTACTGCT+CGG 0.600686 6:-27536572 MsG0680031829.01.T01:three_prime_UTR
ATGAAGGGTTGAAGTTGCAA+GGG 0.622590 6:+27541286 None:intergenic
TGCCTATGCCAGAGTTACAA+AGG 0.623345 6:-27538872 MsG0680031829.01.T01:CDS
CACCTTTGTAACTCTGGCAT+AGG 0.628814 6:+27538870 None:intergenic
CGTAAATGTCCAGCTTCATG+AGG 0.633394 6:-27537209 MsG0680031829.01.T01:CDS
GTAATCAGCGTACTTTGTAA+GGG 0.637392 6:+27538011 None:intergenic
TGTGGGAAGACCATATGCAC+AGG 0.637529 6:-27538037 MsG0680031829.01.T01:CDS
TGTATGGACTGTCCCTACAC+AGG 0.637590 6:-27536895 MsG0680031829.01.T01:three_prime_UTR
ATTATAGGTGATGAAGTTGA+CGG 0.640020 6:-27538171 MsG0680031829.01.T01:CDS
TTCTTCCAAATATTTGAACA+AGG 0.649342 6:+27537138 None:intergenic
TGCGGCTGCAGTAAGGACTG+TGG 0.651747 6:-27538055 MsG0680031829.01.T01:CDS
CCAATCCCTCTGTCCACTAG+CGG 0.664374 6:-27536947 MsG0680031829.01.T01:three_prime_UTR
AGGCTCCCGCTAGTGGACAG+AGG 0.669705 6:+27536941 None:intergenic
TTCAAACCTGAGACCTAGAG+AGG 0.674521 6:-27536852 MsG0680031829.01.T01:three_prime_UTR
TCTCAAGAAAGGGTTTCGAG+TGG 0.684508 6:-27538955 MsG0680031829.01.T01:CDS
CTATGCCAGAGTTACAAAGG+TGG 0.722875 6:-27538869 MsG0680031829.01.T01:CDS
AGTACGCTGATTACTTACGC+CGG 0.724477 6:-27538002 MsG0680031829.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATATATATTGAAAAC+TGG - Chr6:27539159-27539178 MsG0680031829.01.T01:intron 10.0%
!! ATTATAAATATAGACTAAAA+AGG - Chr6:27541118-27541137 MsG0680031829.01.T01:CDS 10.0%
!! CAATATATATTATATAGTAA+TGG + Chr6:27539154-27539173 None:intergenic 10.0%
!! TATAAATATATCAGAAAAAT+AGG + Chr6:27540598-27540617 None:intergenic 10.0%
!!! ACTTTTTATCTAATTTATAT+CGG - Chr6:27539515-27539534 MsG0680031829.01.T01:intron 10.0%
!!! ATTTATTTATTTTGAAAACT+TGG - Chr6:27540845-27540864 MsG0680031829.01.T01:intron 10.0%
!! ATTATCGTTAAGTAAAATAT+TGG - Chr6:27540266-27540285 MsG0680031829.01.T01:intron 15.0%
!! GATAAATTTATAGAAGAAAA+TGG - Chr6:27539291-27539310 MsG0680031829.01.T01:intron 15.0%
!! TTAAAACTTATTCAAAAACA+TGG - Chr6:27539748-27539767 MsG0680031829.01.T01:intron 15.0%
!! TTGGCATAAATATAAATTAA+TGG + Chr6:27539122-27539141 None:intergenic 15.0%
!!! TTAAAATTGTGATTTTGTAT+AGG - Chr6:27537110-27537129 MsG0680031829.01.T01:CDS 15.0%
!!! TTTTAAAGTGAATGAAATTT+TGG + Chr6:27538574-27538593 None:intergenic 15.0%
!! AATATAGACTAAAAAGGAAA+AGG - Chr6:27541124-27541143 MsG0680031829.01.T01:CDS 20.0%
!! AATATATCAGAAAAATAGGA+TGG + Chr6:27540594-27540613 None:intergenic 20.0%
!! AGCTTGAGAAATTAATAAAT+TGG + Chr6:27539197-27539216 None:intergenic 20.0%
!! ATAGAAATCAAATTAGTGTT+GGG - Chr6:27540808-27540827 MsG0680031829.01.T01:intron 20.0%
!! ATATAGACTAAAAAGGAAAA+GGG - Chr6:27541125-27541144 MsG0680031829.01.T01:CDS 20.0%
!! ATATAGGTTATAAAAGTTGA+TGG - Chr6:27538827-27538846 MsG0680031829.01.T01:CDS 20.0%
!! ATGACTAAATGAAATCATAT+AGG - Chr6:27538811-27538830 MsG0680031829.01.T01:CDS 20.0%
!! ATTGAATTCTGTGATTTAAA+AGG - Chr6:27537896-27537915 MsG0680031829.01.T01:intron 20.0%
!! GAAAGTTATGTAATATTAGT+AGG - Chr6:27541061-27541080 MsG0680031829.01.T01:CDS 20.0%
!! TAAAAAGTTAAAGAAGAGAA+TGG + Chr6:27539503-27539522 None:intergenic 20.0%
!! TAATATTACATAACTTTCGA+GGG + Chr6:27541059-27541078 None:intergenic 20.0%
!! TATAAATGATTAACTAGTTC+TGG - Chr6:27538709-27538728 MsG0680031829.01.T01:intron 20.0%
!!! ACACTTTGATATACTAATTT+TGG - Chr6:27540474-27540493 MsG0680031829.01.T01:intron 20.0%
!!! ATGTACATTTGATTTACTTA+AGG - Chr6:27538291-27538310 MsG0680031829.01.T01:intron 20.0%
!!! CTTTTAGTGTCTAAAAAAAA+TGG - Chr6:27537774-27537793 MsG0680031829.01.T01:intron 20.0%
!!! TGTACATTTGATTTACTTAA+GGG - Chr6:27538292-27538311 MsG0680031829.01.T01:intron 20.0%
!!! TGTTTTTGAAATTTTCTTGA+AGG + Chr6:27536614-27536633 None:intergenic 20.0%
! AAAATTTGAATGCATGTTTG+GGG - Chr6:27537052-27537071 MsG0680031829.01.T01:CDS 25.0%
! AATCAAAACAACAAAGCAAA+AGG - Chr6:27536659-27536678 MsG0680031829.01.T01:three_prime_UTR 25.0%
! AATCATGAATGTTTGTACAA+AGG - Chr6:27537665-27537684 MsG0680031829.01.T01:intron 25.0%
! AATTGTGTAGGATGTATTAT+AGG - Chr6:27539661-27539680 MsG0680031829.01.T01:intron 25.0%
! ACAAAATTCCTCATAGTTAT+TGG + Chr6:27540744-27540763 None:intergenic 25.0%
! ATAGGTAAATTTCGTTGTAA+TGG - Chr6:27538736-27538755 MsG0680031829.01.T01:intron 25.0%
! ATATATTGAAAACTGGTACA+TGG - Chr6:27539166-27539185 MsG0680031829.01.T01:intron 25.0%
! ATCAAAACAACAAAGCAAAA+GGG - Chr6:27536660-27536679 MsG0680031829.01.T01:three_prime_UTR 25.0%
! ATCTACCTTGTTCAAATATT+TGG - Chr6:27540704-27540723 MsG0680031829.01.T01:intron 25.0%
! ATTACAATGGCTAAAAATTG+TGG + Chr6:27537640-27537659 None:intergenic 25.0%
! ATTAGACTATGTCTAACTAT+AGG - Chr6:27538155-27538174 MsG0680031829.01.T01:CDS 25.0%
! CAAAATTTGAATGCATGTTT+GGG - Chr6:27537051-27537070 MsG0680031829.01.T01:CDS 25.0%
! CATAGAAATCAAATTAGTGT+TGG - Chr6:27540807-27540826 MsG0680031829.01.T01:intron 25.0%
! CATTTAGTCATAATGAATGA+TGG + Chr6:27538802-27538821 None:intergenic 25.0%
! CTAATATTACATAACTTTCG+AGG + Chr6:27541060-27541079 None:intergenic 25.0%
! GATATATCATATACTCACTA+AGG + Chr6:27539066-27539085 None:intergenic 25.0%
! GTTCATTGATAAAGAATAAC+AGG - Chr6:27541312-27541331 MsG0680031829.01.T01:CDS 25.0%
! TAACAATGATAATAACTCAC+AGG + Chr6:27536964-27536983 None:intergenic 25.0%
! TAGCAAAATAGTGTAAACTA+GGG + Chr6:27536729-27536748 None:intergenic 25.0%
! TAGTGTCTAAAAAAAATGGA+TGG - Chr6:27537778-27537797 MsG0680031829.01.T01:intron 25.0%
! TATATGATTGAAATCTGACA+GGG - Chr6:27540614-27540633 MsG0680031829.01.T01:intron 25.0%
! TATTCAAAAACATGGTTCAT+TGG - Chr6:27539756-27539775 MsG0680031829.01.T01:intron 25.0%
! TCAAAATTTGAATGCATGTT+TGG - Chr6:27537050-27537069 MsG0680031829.01.T01:CDS 25.0%
! TTACAATGGCTAAAAATTGT+GGG + Chr6:27537639-27537658 None:intergenic 25.0%
! TTAGCAAAATAGTGTAAACT+AGG + Chr6:27536730-27536749 None:intergenic 25.0%
! TTATAAGCGTTTATGATATG+AGG - Chr6:27537342-27537361 MsG0680031829.01.T01:intron 25.0%
! TTATATGATTGAAATCTGAC+AGG - Chr6:27540613-27540632 MsG0680031829.01.T01:intron 25.0%
! TTCTTCCAAATATTTGAACA+AGG + Chr6:27540712-27540731 None:intergenic 25.0%
! TTGACTAGTAAACTAAAACA+CGG + Chr6:27539597-27539616 None:intergenic 25.0%
! TTTAGTAGTCAAATTAGAGT+TGG + Chr6:27538411-27538430 None:intergenic 25.0%
! TTTGTTCCTTCATAACATAA+AGG + Chr6:27536706-27536725 None:intergenic 25.0%
!! ATATGATTTTGTGTGTTGAA+TGG - Chr6:27538634-27538653 MsG0680031829.01.T01:intron 25.0%
!! CATGTTTTGTCTTAAAACTT+AGG - Chr6:27540001-27540020 MsG0680031829.01.T01:intron 25.0%
!! GTTTACACTATTTTGCTAAA+TGG - Chr6:27536731-27536750 MsG0680031829.01.T01:three_prime_UTR 25.0%
!! TGAGGAATTTTGTTAGTAAT+AGG - Chr6:27540751-27540770 MsG0680031829.01.T01:intron 25.0%
!! TTTTGTCTTAAAACTTAGGT+TGG - Chr6:27540005-27540024 MsG0680031829.01.T01:intron 25.0%
!!! AAGTCAAAAATGTTAGCTTT+TGG + Chr6:27537869-27537888 None:intergenic 25.0%
!!! ACAATTTTTAGCCATTGTAA+TGG - Chr6:27537639-27537658 MsG0680031829.01.T01:intron 25.0%
!!! AGCTCATGAATTTCTTTTTT+GGG + Chr6:27538223-27538242 None:intergenic 25.0%
!!! AGTCAAAAATGTTAGCTTTT+GGG + Chr6:27537868-27537887 None:intergenic 25.0%
!!! ATAGTAATGGACATTTATGT+TGG + Chr6:27539141-27539160 None:intergenic 25.0%
!!! ATTGGAAGCTTTATTAAATG+CGG - Chr6:27539774-27539793 MsG0680031829.01.T01:intron 25.0%
!!! TAGCTCATGAATTTCTTTTT+TGG + Chr6:27538224-27538243 None:intergenic 25.0%
!!! TATTTTGAAAACTTGGTATC+CGG - Chr6:27540852-27540871 MsG0680031829.01.T01:intron 25.0%
!!! TCTTAATCATGCTACTTTAT+AGG - Chr6:27537926-27537945 MsG0680031829.01.T01:intron 25.0%
AAAAAAATGGATGGCAAGAT+TGG - Chr6:27537787-27537806 MsG0680031829.01.T01:intron 30.0%
AAAACCAACCTATAAGGTAT+AGG - Chr6:27540045-27540064 MsG0680031829.01.T01:intron 30.0%
AACACGGTCATATTATAGAA+AGG + Chr6:27539581-27539600 None:intergenic 30.0%
AACGTGTCATCATATTTCAA+TGG - Chr6:27540323-27540342 MsG0680031829.01.T01:intron 30.0%
ACACGGTCATATTATAGAAA+GGG + Chr6:27539580-27539599 None:intergenic 30.0%
ACACTACACAACTTTATAAG+TGG + Chr6:27540077-27540096 None:intergenic 30.0%
ACTAAAAAATCAACACGCAA+TGG - Chr6:27538425-27538444 MsG0680031829.01.T01:intron 30.0%
ACTTATAAAGTTGTGTAGTG+TGG - Chr6:27540076-27540095 MsG0680031829.01.T01:intron 30.0%
AGATGAGGGATTATATGTAA+TGG + Chr6:27539404-27539423 None:intergenic 30.0%
AGTTGCTTAAAATCCTTATC+AGG + Chr6:27538929-27538948 None:intergenic 30.0%
ATCCATACATTTCTACTAGT+GGG - Chr6:27540178-27540197 MsG0680031829.01.T01:intron 30.0%
ATTATAGGTGATGAAGTTGA+CGG - Chr6:27539676-27539695 MsG0680031829.01.T01:intron 30.0%
CAAATAACTGGTTGTAATTG+AGG - Chr6:27539952-27539971 MsG0680031829.01.T01:intron 30.0%
CTGAACATGACTTTATAAGT+GGG + Chr6:27540410-27540429 None:intergenic 30.0%
CTTCTATAGAAATTACTGCT+CGG - Chr6:27541275-27541294 MsG0680031829.01.T01:CDS 30.0%
GATGAGGGATTATATGTAAT+GGG + Chr6:27539403-27539422 None:intergenic 30.0%
GTAAGTTGTTTATCCAAACA+GGG - Chr6:27537371-27537390 MsG0680031829.01.T01:intron 30.0%
GTCATATTATAGAAAGGGTT+GGG + Chr6:27539575-27539594 None:intergenic 30.0%
GTGAATCCTTTATGTTATGA+AGG - Chr6:27536697-27536716 MsG0680031829.01.T01:three_prime_UTR 30.0%
TAGAAGGCTTAAGTCATTAA+CGG + Chr6:27538038-27538057 None:intergenic 30.0%
TATGTATGCTGTAATTGTGT+AGG - Chr6:27539649-27539668 MsG0680031829.01.T01:intron 30.0%
TCATGATTAGACCATTACAA+TGG + Chr6:27537653-27537672 None:intergenic 30.0%
TCTGAACATGACTTTATAAG+TGG + Chr6:27540411-27540430 None:intergenic 30.0%
TGAACATGACTTTATAAGTG+GGG + Chr6:27540409-27540428 None:intergenic 30.0%
TGTAAAGATGTGAATACATG+AGG + Chr6:27539925-27539944 None:intergenic 30.0%
TGTAAGTTGTTTATCCAAAC+AGG - Chr6:27537370-27537389 MsG0680031829.01.T01:intron 30.0%
! AACAGAAATAAAAGAAGTGC+TGG + Chr6:27538525-27538544 None:intergenic 30.0%
! ATGATGATGATGATGATGAA+GGG + Chr6:27536579-27536598 None:intergenic 30.0%
! CAAACATCAATACCTTTTCA+AGG + Chr6:27539887-27539906 None:intergenic 30.0%
! GATTATATGTAATGGGAAAG+AGG + Chr6:27539396-27539415 None:intergenic 30.0%
! GCATTGAGTATTTTGTATGT+TGG - Chr6:27541151-27541170 MsG0680031829.01.T01:CDS 30.0%
! TACTTGAATTAGCTTATCCA+TGG + Chr6:27538076-27538095 None:intergenic 30.0%
! TGAGTATTTTGTATGTTGGT+TGG - Chr6:27541155-27541174 MsG0680031829.01.T01:CDS 30.0%
! TTAAGGGTAGTTCTATTTCA+TGG - Chr6:27538308-27538327 MsG0680031829.01.T01:intron 30.0%
!! ATTTTGTATGTTGGTTGGTT+TGG - Chr6:27541160-27541179 MsG0680031829.01.T01:CDS 30.0%
!! TTAACTAGTTCTGGAAGAAT+AGG - Chr6:27538718-27538737 MsG0680031829.01.T01:intron 30.0%
!! TTTTGGGTCAGAAATAAAAC+TGG + Chr6:27537852-27537871 None:intergenic 30.0%
!!! AAAGGATGTTTTGATGTTGT+CGG - Chr6:27537683-27537702 MsG0680031829.01.T01:intron 30.0%
!!! CATGAATTTCTTTTTTGGGA+AGG + Chr6:27538219-27538238 None:intergenic 30.0%
!!! GTTTTAGTTTACTAGTCAAG+TGG - Chr6:27539598-27539617 MsG0680031829.01.T01:intron 30.0%
!!! TTTCTTTTTTGGGAAGGATT+AGG + Chr6:27538213-27538232 None:intergenic 30.0%
!!! TTTTGTATGTTGGTTGGTTT+GGG - Chr6:27541161-27541180 MsG0680031829.01.T01:CDS 30.0%
ACAGGGTCTTTGTATTACAA+AGG - Chr6:27537388-27537407 MsG0680031829.01.T01:intron 35.0%
ACCTATAAATGCATACATCG+TGG + Chr6:27537996-27538015 None:intergenic 35.0%
AGACTAAAAAGGAAAAGGGA+GGG - Chr6:27541129-27541148 MsG0680031829.01.T01:CDS 35.0%
AGTAATCAGCGTACTTTGTA+AGG + Chr6:27539840-27539859 None:intergenic 35.0%
ATGAAGTTCTTGCCTTGAAA+AGG - Chr6:27539872-27539891 MsG0680031829.01.T01:intron 35.0%
ATGTTCAATCTTAGGTGTGA+CGG + Chr6:27540118-27540137 None:intergenic 35.0%
ATTACATAACTTTCGAGGGT+CGG + Chr6:27541055-27541074 None:intergenic 35.0%
CACACCTAAGATTGAACATA+TGG - Chr6:27540119-27540138 MsG0680031829.01.T01:intron 35.0%
CACTCCATATGTTCAATCTT+AGG + Chr6:27540126-27540145 None:intergenic 35.0%
CAGGGTCTTTGTATTACAAA+GGG - Chr6:27537389-27537408 MsG0680031829.01.T01:intron 35.0%
CCATCAAAAACAGCTATAAC+AGG + Chr6:27536796-27536815 None:intergenic 35.0%
CGAGAAATAAACCAACTTCT+AGG + Chr6:27541207-27541226 None:intergenic 35.0%
CTACACAACTTTATAAGTGG+AGG + Chr6:27540074-27540093 None:intergenic 35.0%
CTGAACAAGTTCTCAAGAAA+GGG - Chr6:27538882-27538901 MsG0680031829.01.T01:CDS 35.0%
CTGTATGTATTCGAGAGATT+CGG + Chr6:27539454-27539473 None:intergenic 35.0%
CTTAAAATCCTTATCAGGAG+AGG + Chr6:27538924-27538943 None:intergenic 35.0%
CTTCTTTCTAACATAAGCAC+TGG + Chr6:27540787-27540806 None:intergenic 35.0%
CTTTGCTCTGACTTAAATTG+AGG + Chr6:27540929-27540948 None:intergenic 35.0%
GAAGCTTATCTTCATCAAGT+TGG - Chr6:27538332-27538351 MsG0680031829.01.T01:intron 35.0%
GAAGTTGCTTCCTTCTTATA+AGG - Chr6:27536840-27536859 MsG0680031829.01.T01:three_prime_UTR 35.0%
GAGGATGAGAATTGTGAAAT+GGG - Chr6:27537420-27537439 MsG0680031829.01.T01:intron 35.0%
GATCCATACATTTCTACTAG+TGG - Chr6:27540177-27540196 MsG0680031829.01.T01:intron 35.0%
GATTGGAAAAGATACGAGTT+AGG - Chr6:27537804-27537823 MsG0680031829.01.T01:intron 35.0%
GCTATCTAATTCCTAGAAGT+TGG - Chr6:27541193-27541212 MsG0680031829.01.T01:CDS 35.0%
GGTCATATTATAGAAAGGGT+TGG + Chr6:27539576-27539595 None:intergenic 35.0%
GTAAAGAGCCAATAACTATG+AGG - Chr6:27540733-27540752 MsG0680031829.01.T01:intron 35.0%
GTAATCAGCGTACTTTGTAA+GGG + Chr6:27539839-27539858 None:intergenic 35.0%
TAAGCGTTTATGATATGAGG+TGG - Chr6:27537345-27537364 MsG0680031829.01.T01:intron 35.0%
TAAGGCTTAGATCAGATTGA+GGG + Chr6:27539048-27539067 None:intergenic 35.0%
TAGACTAAAAAGGAAAAGGG+AGG - Chr6:27541128-27541147 MsG0680031829.01.T01:CDS 35.0%
TAGTTAGGGTTATGAGATGA+GGG + Chr6:27539418-27539437 None:intergenic 35.0%
TCCACGATGTATGCATTTAT+AGG - Chr6:27537992-27538011 MsG0680031829.01.T01:CDS 35.0%
TCCATACATTTCTACTAGTG+GGG - Chr6:27540179-27540198 MsG0680031829.01.T01:intron 35.0%
TCGTACAAAACCAACCTATA+AGG - Chr6:27540039-27540058 MsG0680031829.01.T01:intron 35.0%
TCTCATAACCCTAACTAACT+TGG - Chr6:27539421-27539440 MsG0680031829.01.T01:intron 35.0%
TCTGAACAAGTTCTCAAGAA+AGG - Chr6:27538881-27538900 MsG0680031829.01.T01:CDS 35.0%
TCTGTTTGTTCATACCCAAT+TGG - Chr6:27537728-27537747 MsG0680031829.01.T01:intron 35.0%
TGTAATACAAAGACCCTGTT+TGG + Chr6:27537387-27537406 None:intergenic 35.0%
TGTAGTAGTCTGATAGAAAC+TGG - Chr6:27539269-27539288 MsG0680031829.01.T01:intron 35.0%
TGTATTACAAAGGGAGTGAA+AGG - Chr6:27537398-27537417 MsG0680031829.01.T01:intron 35.0%
TGTCATGGTTTGATGAATAG+AGG + Chr6:27538103-27538122 None:intergenic 35.0%
TTAGTTAGGGTTATGAGATG+AGG + Chr6:27539419-27539438 None:intergenic 35.0%
TTCCTTCTTATAAGGCCAAT+CGG - Chr6:27536848-27536867 MsG0680031829.01.T01:three_prime_UTR 35.0%
TTGTAGGATATTGTGGGATT+GGG - Chr6:27537543-27537562 MsG0680031829.01.T01:intron 35.0%
! ATCTGAGCTTTGATACCAAT+TGG + Chr6:27537746-27537765 None:intergenic 35.0%
! ATGTAATGGGAAAGAGGAAT+TGG + Chr6:27539390-27539409 None:intergenic 35.0%
! CAAACTTTCCTTTTTCCTCA+TGG - Chr6:27538367-27538386 MsG0680031829.01.T01:intron 35.0%
! GATGATGATGATGATGATGA+AGG + Chr6:27536580-27536599 None:intergenic 35.0%
! GCAATTTTCATAAGCTATCC+TGG + Chr6:27537240-27537259 None:intergenic 35.0%
! TCTGAGCTTTGATACCAATT+GGG + Chr6:27537745-27537764 None:intergenic 35.0%
! TTACACTTGCTGCAAATAAC+TGG - Chr6:27539940-27539959 MsG0680031829.01.T01:intron 35.0%
!! AGCTTATGGAAAAAGTGTCA+TGG + Chr6:27538118-27538137 None:intergenic 35.0%
!! TGTGTCTGAAGTTTTAACCA+TGG - Chr6:27538545-27538564 MsG0680031829.01.T01:intron 35.0%
!! TTCTAGTTCATTATGCAGCA+AGG + Chr6:27539249-27539268 None:intergenic 35.0%
!!! CCTGTTATAGCTGTTTTTGA+TGG - Chr6:27536793-27536812 MsG0680031829.01.T01:three_prime_UTR 35.0%
!!! CTGTTTTTGATGGTGAAAGA+GGG - Chr6:27536803-27536822 MsG0680031829.01.T01:three_prime_UTR 35.0%
!!! TCATGAGTTGTTTTTGCTTG+TGG - Chr6:27537208-27537227 MsG0680031829.01.T01:CDS 35.0%
!!! TGGTTTTGTACGATTGAGTT+AGG + Chr6:27540032-27540051 None:intergenic 35.0%
AAAATTGTGGGAGACAAGTG+TGG + Chr6:27537627-27537646 None:intergenic 40.0%
AAAGAGGGAGTGAGTATAGA+AGG - Chr6:27536818-27536837 MsG0680031829.01.T01:three_prime_UTR 40.0%
AAATTCGAGTGAGATAGCAC+CGG + Chr6:27539342-27539361 None:intergenic 40.0%
ACTTAAGCCTTCTACTAACC+AGG - Chr6:27538044-27538063 MsG0680031829.01.T01:CDS 40.0%
AGGATGGCTGAGTATAAGTT+GGG + Chr6:27540578-27540597 None:intergenic 40.0%
AGGCAAGAACTTCATAGTTC+CGG + Chr6:27539867-27539886 None:intergenic 40.0%
AGTCAGAGCAAAGCTATGTA+TGG - Chr6:27540936-27540955 MsG0680031829.01.T01:CDS 40.0%
AGTTGAATAGACGTTCCATG+AGG + Chr6:27538385-27538404 None:intergenic 40.0%
ATATTGTGGGATTGGGTACT+GGG - Chr6:27537550-27537569 MsG0680031829.01.T01:intron 40.0%
ATGAAGGGTTGAAGTTGCAA+GGG + Chr6:27536564-27536583 None:intergenic 40.0%
ATTACAAAGGGAGTGAAAGG+AGG - Chr6:27537401-27537420 MsG0680031829.01.T01:intron 40.0%
ATTCCAGAACAAAGCAAGCA+CGG + Chr6:27538665-27538684 None:intergenic 40.0%
CAGTCTTCCAACCAAAACTA+GGG + Chr6:27539726-27539745 None:intergenic 40.0%
CCATACATTTCTACTAGTGG+GGG - Chr6:27540180-27540199 MsG0680031829.01.T01:intron 40.0%
CTAAGGCTTAGATCAGATTG+AGG + Chr6:27539049-27539068 None:intergenic 40.0%
CTACAACATCATCAGCTTCA+TGG + Chr6:27538853-27538872 None:intergenic 40.0%
CTTGTAGGATATTGTGGGAT+TGG - Chr6:27537542-27537561 MsG0680031829.01.T01:intron 40.0%
GATGTGAATACATGAGGCAA+AGG + Chr6:27539919-27539938 None:intergenic 40.0%
GGAGGATGAGAATTGTGAAA+TGG - Chr6:27537419-27537438 MsG0680031829.01.T01:intron 40.0%
GGGTATGAACAAACAGAAGT+TGG + Chr6:27537725-27537744 None:intergenic 40.0%
GGTATCAAAGCTCAGATCTT+TGG - Chr6:27537749-27537768 MsG0680031829.01.T01:intron 40.0%
GTAGTAACCTGGTTAGTAGA+AGG + Chr6:27538054-27538073 None:intergenic 40.0%
GTGCTCTACCAAGTTAGTTA+GGG + Chr6:27539432-27539451 None:intergenic 40.0%
TACTAACCAGGTTACTACCA+TGG - Chr6:27538056-27538075 MsG0680031829.01.T01:CDS 40.0%
TAGACGTTCCATGAGGAAAA+AGG + Chr6:27538378-27538397 None:intergenic 40.0%
TAGGATGGCTGAGTATAAGT+TGG + Chr6:27540579-27540598 None:intergenic 40.0%
TATTAAATGCGGCTGCAGTA+AGG - Chr6:27539785-27539804 MsG0680031829.01.T01:intron 40.0%
TGGTGCTTGTAGGATATTGT+GGG - Chr6:27537537-27537556 MsG0680031829.01.T01:intron 40.0%
TTAGAGCTAGTTGCAGCTTA+TGG + Chr6:27538132-27538151 None:intergenic 40.0%
TTGAATGCATGTTTGGGGAT+TGG - Chr6:27537057-27537076 MsG0680031829.01.T01:CDS 40.0%
! ACAAGCTGTCACTACTGATT+TGG + Chr6:27538608-27538627 None:intergenic 40.0%
! AGAGCATCTGCTACTAAGAT+GGG + Chr6:27537584-27537603 None:intergenic 40.0%
! CTCAAAGTATTCGAGAAACC+CGG - Chr6:27539320-27539339 MsG0680031829.01.T01:intron 40.0%
! GAATGAAATTTTGGACGCCA+TGG + Chr6:27538565-27538584 None:intergenic 40.0%
! GGACATGTTGGAAGGTTTTA+TGG - Chr6:27536904-27536923 MsG0680031829.01.T01:three_prime_UTR 40.0%
! TTTTGCTTGTGGAAAACTCC+AGG - Chr6:27537219-27537238 MsG0680031829.01.T01:intron 40.0%
!! AAGAGCATCTGCTACTAAGA+TGG + Chr6:27537585-27537604 None:intergenic 40.0%
!! ACAAAACCGACTTGTATGGT+GGG - Chr6:27540378-27540397 MsG0680031829.01.T01:intron 40.0%
!! ACCATACAAGTCGGTTTTGT+AGG + Chr6:27540378-27540397 None:intergenic 40.0%
!! ACTACTGATTTGGTGACAAC+TGG + Chr6:27538598-27538617 None:intergenic 40.0%
!! TACAAAACCGACTTGTATGG+TGG - Chr6:27540377-27540396 MsG0680031829.01.T01:intron 40.0%
!! TCAAGGATCAACTGATTCGA+GGG - Chr6:27540876-27540895 MsG0680031829.01.T01:intron 40.0%
!! TCCTACAAAACCGACTTGTA+TGG - Chr6:27540374-27540393 MsG0680031829.01.T01:intron 40.0%
!!! GCTGTTTTTGATGGTGAAAG+AGG - Chr6:27536802-27536821 MsG0680031829.01.T01:three_prime_UTR 40.0%
AAAACTTGGTATCCGGCTCA+AGG - Chr6:27540859-27540878 MsG0680031829.01.T01:intron 45.0%
AAGGACCACCTTTGTAACTC+TGG + Chr6:27538986-27539005 None:intergenic 45.0%
AATGCATACATCGTGGACTC+TGG + Chr6:27537989-27538008 None:intergenic 45.0%
AATGCATGTTTGGGGATTGG+AGG - Chr6:27537060-27537079 MsG0680031829.01.T01:CDS 45.0%
AATTCGAGTGAGATAGCACC+GGG + Chr6:27539341-27539360 None:intergenic 45.0%
ACACAGGAATTGTTGGCACA+TGG - Chr6:27540968-27540987 MsG0680031829.01.T01:CDS 45.0%
ACATCGACACATGTTGTGTC+GGG - Chr6:27537493-27537512 MsG0680031829.01.T01:intron 45.0%
ATGGGAAAGAGGAATTGGAG+AGG + Chr6:27539385-27539404 None:intergenic 45.0%
ATGTCCAGCTTCATGAGGAA+TGG - Chr6:27540643-27540662 MsG0680031829.01.T01:intron 45.0%
ATGTTTGGGGATTGGAGGAT+TGG - Chr6:27537065-27537084 MsG0680031829.01.T01:CDS 45.0%
CAAAACTAGGGACGAGATGT+TGG + Chr6:27539714-27539733 None:intergenic 45.0%
CACAGGAATTGTTGGCACAT+GGG - Chr6:27540969-27540988 MsG0680031829.01.T01:CDS 45.0%
CACCTTTGTAACTCTGGCAT+AGG + Chr6:27538980-27538999 None:intergenic 45.0%
CATCAACACGCGAACGATAA+AGG - Chr6:27540238-27540257 MsG0680031829.01.T01:intron 45.0%
CCCCCACTAGTAGAAATGTA+TGG + Chr6:27540183-27540202 None:intergenic 45.0%
CGTAAATGTCCAGCTTCATG+AGG - Chr6:27540638-27540657 MsG0680031829.01.T01:intron 45.0%
CTATGCCAGAGTTACAAAGG+TGG - Chr6:27538978-27538997 MsG0680031829.01.T01:CDS 45.0%
GAATCAGTTGATCCTTGAGC+CGG + Chr6:27540874-27540893 None:intergenic 45.0%
GACATCGACACATGTTGTGT+CGG - Chr6:27537492-27537511 MsG0680031829.01.T01:intron 45.0%
GATATTGTGGGATTGGGTAC+TGG - Chr6:27537549-27537568 MsG0680031829.01.T01:intron 45.0%
GATGAAGGGTTGAAGTTGCA+AGG + Chr6:27536565-27536584 None:intergenic 45.0%
GCAGCCTATACCTTATAGGT+TGG + Chr6:27540052-27540071 None:intergenic 45.0%
GCAGTCTTCCAACCAAAACT+AGG + Chr6:27539727-27539746 None:intergenic 45.0%
GCTTATCCATGGTAGTAACC+TGG + Chr6:27538065-27538084 None:intergenic 45.0%
GGTGCTCTACCAAGTTAGTT+AGG + Chr6:27539433-27539452 None:intergenic 45.0%
GTAATGTCTCGCAGTGTAGA+AGG + Chr6:27539005-27539024 None:intergenic 45.0%
GTGCCAACAATTCCTGTGTA+GGG + Chr6:27540967-27540986 None:intergenic 45.0%
GTGGTGCTTGTAGGATATTG+TGG - Chr6:27537536-27537555 MsG0680031829.01.T01:intron 45.0%
TCTCAAGAAAGGGTTTCGAG+TGG - Chr6:27538892-27538911 MsG0680031829.01.T01:CDS 45.0%
TGCCTATGCCAGAGTTACAA+AGG - Chr6:27538975-27538994 MsG0680031829.01.T01:CDS 45.0%
TGGAGAGGTTATCTTCAACG+AGG + Chr6:27539370-27539389 None:intergenic 45.0%
TGTCCCTACACAGGAATTGT+TGG - Chr6:27540961-27540980 MsG0680031829.01.T01:CDS 45.0%
TGTGCCAACAATTCCTGTGT+AGG + Chr6:27540968-27540987 None:intergenic 45.0%
TGTTTGGGGATTGGAGGATT+GGG - Chr6:27537066-27537085 MsG0680031829.01.T01:CDS 45.0%
TTCAAACCTGAGACCTAGAG+AGG - Chr6:27540995-27541014 MsG0680031829.01.T01:CDS 45.0%
! AGTACGCTGATTACTTACGC+CGG - Chr6:27539845-27539864 MsG0680031829.01.T01:intron 45.0%
! ATGCCCTCTATCAGAAGTGT+CGG + Chr6:27537457-27537476 None:intergenic 45.0%
! CAACATCTCGTCCCTAGTTT+TGG - Chr6:27539712-27539731 MsG0680031829.01.T01:intron 45.0%
! TATTGTGGGATTGGGTACTG+GGG - Chr6:27537551-27537570 MsG0680031829.01.T01:intron 45.0%
!! ACATAAGCACTGGTGTTAGC+AGG + Chr6:27540777-27540796 None:intergenic 45.0%
!! CTCAAGGATCAACTGATTCG+AGG - Chr6:27540875-27540894 MsG0680031829.01.T01:intron 45.0%
!! CTCCGATTGGCCTTATAAGA+AGG + Chr6:27536853-27536872 None:intergenic 45.0%
!!! ATCTCGTCCCTAGTTTTGGT+TGG - Chr6:27539716-27539735 MsG0680031829.01.T01:intron 45.0%
!! TTTATTCTATTATTATTAAA+TGG - Chr6:27541087-27541106 MsG0680031829.01.T01:CDS 5.0%
!!! TTTTATATATTTTTTTTGTT+GGG - Chr6:27537004-27537023 MsG0680031829.01.T01:three_prime_UTR 5.0%
!!! TTTTTATATATTTTTTTTGT+TGG - Chr6:27537003-27537022 MsG0680031829.01.T01:three_prime_UTR 5.0%
AGAAAATTCGCGGCGAATGG+TGG - Chr6:27536871-27536890 MsG0680031829.01.T01:three_prime_UTR 50.0%
ATAACTTTCGAGGGTCGGCT+TGG + Chr6:27541050-27541069 None:intergenic 50.0%
CACCCGACACTTCTGATAGA+GGG - Chr6:27537451-27537470 MsG0680031829.01.T01:intron 50.0%
CCAACCATTCCTCATGAAGC+TGG + Chr6:27540650-27540669 None:intergenic 50.0%
CCAGCTTCATGAGGAATGGT+TGG - Chr6:27540647-27540666 MsG0680031829.01.T01:intron 50.0%
CTGCTACTATGAGACCACTC+GGG + Chr6:27540152-27540171 None:intergenic 50.0%
GATGAAGTTGACGGTGTTCC+TGG - Chr6:27539685-27539704 MsG0680031829.01.T01:intron 50.0%
GCAGTTCCCACCATACAAGT+CGG + Chr6:27540387-27540406 None:intergenic 50.0%
GCTGCTACTATGAGACCACT+CGG + Chr6:27540153-27540172 None:intergenic 50.0%
GGAGGCAGCCTATACCTTAT+AGG + Chr6:27540056-27540075 None:intergenic 50.0%
GGCCAATCGGAGAAAATTCG+CGG - Chr6:27536861-27536880 MsG0680031829.01.T01:three_prime_UTR 50.0%
GGTGATTGCCTCTCCTGATA+AGG - Chr6:27538913-27538932 MsG0680031829.01.T01:CDS 50.0%
GTGGAAGTGGACATGTTGGA+AGG - Chr6:27536896-27536915 MsG0680031829.01.T01:three_prime_UTR 50.0%
GTTTGGGGATTGGAGGATTG+GGG - Chr6:27537067-27537086 MsG0680031829.01.T01:CDS 50.0%
TAAATTGAGGCTCCCGCTAG+TGG + Chr6:27540916-27540935 None:intergenic 50.0%
TCGGGTGTTAGTGTCTGTGA+CGG - Chr6:27537511-27537530 MsG0680031829.01.T01:intron 50.0%
TGGTCTCATAGTAGCAGCGA+CGG - Chr6:27540155-27540174 MsG0680031829.01.T01:intron 50.0%
TGTGGGAAGACCATATGCAC+AGG - Chr6:27539810-27539829 MsG0680031829.01.T01:intron 50.0%
! ATAGAGGGCATGCCTGGTAT+CGG - Chr6:27537466-27537485 MsG0680031829.01.T01:intron 50.0%
! TAGCCGTGCTTGCTTTGTTC+TGG - Chr6:27538659-27538678 MsG0680031829.01.T01:intron 50.0%
! TGGTGGTGAAAGTTTGGGAC+CGG + Chr6:27541030-27541049 None:intergenic 50.0%
! TGTATGGACTGTCCCTACAC+AGG - Chr6:27540952-27540971 MsG0680031829.01.T01:CDS 50.0%
!! AGGTGTGACGGATGTGTGTT+AGG + Chr6:27540106-27540125 None:intergenic 50.0%
!! ATTGTGGGATTGGGTACTGG+GGG - Chr6:27537552-27537571 MsG0680031829.01.T01:intron 50.0%
!! CGGCTTGGTGGTGAAAGTTT+GGG + Chr6:27541035-27541054 None:intergenic 50.0%
!! GTAAGGGCATCCTGTGCATA+TGG + Chr6:27539823-27539842 None:intergenic 50.0%
!! TCGGCTTGGTGGTGAAAGTT+TGG + Chr6:27541036-27541055 None:intergenic 50.0%
!! TGCCCTCTATCAGAAGTGTC+GGG + Chr6:27537456-27537475 None:intergenic 50.0%
AAATTCGCGGCGAATGGTGG+TGG - Chr6:27536874-27536893 MsG0680031829.01.T01:three_prime_UTR 55.0%
CAATCCCTCTGTCCACTAGC+GGG - Chr6:27540901-27540920 MsG0680031829.01.T01:intron 55.0%
CATATGGAGTGAGACCCGAG+TGG - Chr6:27540135-27540154 MsG0680031829.01.T01:intron 55.0%
CCAATCCCTCTGTCCACTAG+CGG - Chr6:27540900-27540919 MsG0680031829.01.T01:intron 55.0%
CGGAGAAAATTCGCGGCGAA+TGG - Chr6:27536868-27536887 MsG0680031829.01.T01:three_prime_UTR 55.0%
GCACCCGACACTTCTGATAG+AGG - Chr6:27537450-27537469 MsG0680031829.01.T01:intron 55.0%
GGGACGAGATGTTGGATACC+AGG + Chr6:27539706-27539725 None:intergenic 55.0%
GTCGATGTCATGCCGATACC+AGG + Chr6:27537481-27537500 None:intergenic 55.0%
GTTAGTGTCTGTGACGGTCG+TGG - Chr6:27537517-27537536 MsG0680031829.01.T01:intron 55.0%
TGTGCTCCTCTCTAGGTCTC+AGG + Chr6:27541004-27541023 None:intergenic 55.0%
! CGCCGCGAATTTTCTCCGAT+TGG + Chr6:27536866-27536885 None:intergenic 55.0%
! CTTCTGATAGAGGGCATGCC+TGG - Chr6:27537460-27537479 MsG0680031829.01.T01:intron 55.0%
! GGTGGTGAAAGTTTGGGACC+GGG + Chr6:27541029-27541048 None:intergenic 55.0%
!! GGTGGTGGAAGTGGACATGT+TGG - Chr6:27536892-27536911 MsG0680031829.01.T01:three_prime_UTR 55.0%
!! TTGTGGGATTGGGTACTGGG+GGG - Chr6:27537553-27537572 MsG0680031829.01.T01:intron 55.0%
GCGGCTGCAGTAAGGACTGT+GGG - Chr6:27539793-27539812 MsG0680031829.01.T01:intron 60.0%
GTGACGGTCGTGGTGCTTGT+AGG - Chr6:27537527-27537546 MsG0680031829.01.T01:intron 60.0%
TGCGGCTGCAGTAAGGACTG+TGG - Chr6:27539792-27539811 MsG0680031829.01.T01:intron 60.0%
! CCGCTAGTGGACAGAGGGAT+TGG + Chr6:27540903-27540922 None:intergenic 60.0%
!! ACTTTCGAGGGTCGGCTTGG+TGG + Chr6:27541047-27541066 None:intergenic 60.0%
!! GCGAATGGTGGTGGTGGAAG+TGG - Chr6:27536883-27536902 MsG0680031829.01.T01:three_prime_UTR 60.0%
! AGGCTCCCGCTAGTGGACAG+AGG + Chr6:27540909-27540928 None:intergenic 65.0%
! CCTAGAGAGGAGCACACGCC+CGG - Chr6:27541008-27541027 MsG0680031829.01.T01:CDS 65.0%
! GGCTCCCGCTAGTGGACAGA+GGG + Chr6:27540908-27540927 None:intergenic 65.0%
!! TTCGCGGCGAATGGTGGTGG+TGG - Chr6:27536877-27536896 MsG0680031829.01.T01:three_prime_UTR 65.0%
CCGGGCGTGTGCTCCTCTCT+AGG + Chr6:27541011-27541030 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 27536517 27541352 27536517 ID=MsG0680031829.01;Name=MsG0680031829.01
Chr6 mRNA 27536517 27541352 27536517 ID=MsG0680031829.01.T01;Parent=MsG0680031829.01;Name=MsG0680031829.01.T01;_AED=0.34;_eAED=0.34;_QI=0|1|0.75|1|1|1|4|507|371
Chr6 exon 27536517 27537234 27536517 ID=MsG0680031829.01.T01:exon:8691;Parent=MsG0680031829.01.T01
Chr6 exon 27537976 27538198 27537976 ID=MsG0680031829.01.T01:exon:8690;Parent=MsG0680031829.01.T01
Chr6 exon 27538802 27539036 27538802 ID=MsG0680031829.01.T01:exon:8689;Parent=MsG0680031829.01.T01
Chr6 exon 27540906 27541352 27540906 ID=MsG0680031829.01.T01:exon:8688;Parent=MsG0680031829.01.T01
Chr6 CDS 27540906 27541352 27540906 ID=MsG0680031829.01.T01:cds;Parent=MsG0680031829.01.T01
Chr6 CDS 27538802 27539036 27538802 ID=MsG0680031829.01.T01:cds;Parent=MsG0680031829.01.T01
Chr6 CDS 27537976 27538198 27537976 ID=MsG0680031829.01.T01:cds;Parent=MsG0680031829.01.T01
Chr6 CDS 27537024 27537234 27537024 ID=MsG0680031829.01.T01:cds;Parent=MsG0680031829.01.T01
Chr6 three_prime_UTR 27536517 27537023 27536517 ID=MsG0680031829.01.T01:three_prime_utr;Parent=MsG0680031829.01.T01
Gene Sequence

>MsG0680031829.01.T01

ATGATGAAAACATTATCATCATCACATGCTTTCAATTTCATTCACCCTTGCAACTTCAACCCTTCATCATCATCATCATCATCTTCTTCAGTATCCTTCAAGAAAATTTCAAAAACAACATCACTACAAAAACTGAACACAGAATCAAAACAACAAAGCAAAAGGGTATTCTTTTTAGACGTGAATCCTTTATGTTATGAAGGAACAAACCCTAGTTTACACTATTTTGCTAAATGGCTGAAACTTTTTCTATCTCATCAAGTTACTCAATCTCATCCTGTTATAGCTGTTTTTGATGGTGAAAGAGGGAGTGAGTATAGAAGGAAGTTGCTTCCTTCTTATAAGGCCAATCGGAGAAAATTCGCGGCGAATGGTGGTGGTGGAAGTGGACATGTTGGAAGGTTTTATGGTGTTATCAGTGATGTTCTTCGACAATGCAATGTTCCTGTTATAAAAGTTGATGGCCATGAAGCTGATGATGTTGTAGCTACACTTTCTGAACAAGTTCTCAAGAAAGGGTTTCGAGTGGTGATTGCCTCTCCTGATAAGGATTTTAAGCAACTTATTTCTGACAATGTGCAAATAGTCATGCCTATGCCAGAGTTACAAAGGTGGTCCTTCTACACTGCGAGACATTACAGAGATCAGTATAATTGCGACCCTCAATCTGATCTAAGCCTTAGATGTATTATAGGTGATGAAGTTGACGGTGTTCCTGGTATCCAACATCTCGTCCCTAGTTTTGGTTGGAAGACTGCTTTAAAACTTATTCAAAAACATGGTTCATTGGAAGCTTTATTAAATGCGGCTGCAGTAAGGACTGTGGGAAGACCATATGCACAGGATGCCCTTACAAAGTACGCTGATTACTTACGCCGGAACTATGAAGTTCTTGCCTTGAAAAGGGACGTAAATGTCCAGCTTCATGAGGAATGGTTGGTTGATAGAGACACTCACAATGATACTATTGCACTATCTACCTTGTTCAAATATTTGGAAGAAAGTAAAGAGCCAATAACTATGAGGAATTTTGTTAGTAATAGGCCTGCTAACACCAGTGCTTATGTTAGAAAGAAGCATAGAAATCAAATTAGTGTTGGGACAGATGTTATGTAA
Protein sequence

>MsG0680031829.01.T01

MMKTLSSSHAFNFIHPCNFNPSSSSSSSSSVSFKKISKTTSLQKLNTESKQQSKRVFFLDVNPLCYEGTNPSLHYFAKWLKLFLSHQVTQSHPVIAVFDGERGSEYRRKLLPSYKANRRKFAANGGGGSGHVGRFYGVISDVLRQCNVPVIKVDGHEADDVVATLSEQVLKKGFRVVIASPDKDFKQLISDNVQIVMPMPELQRWSFYTARHYRDQYNCDPQSDLSLRCIIGDEVDGVPGIQHLVPSFGWKTALKLIQKHGSLEALLNAAAVRTVGRPYAQDALTKYADYLRRNYEVLALKRDVNVQLHEEWLVDRDTHNDTIALSTLFKYLEESKEPITMRNFVSNRPANTSAYVRKKHRNQISVGTDVM*