AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005964.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005964.01.T01 MTR_1g110870 65.672 201 26 4 9 171 226 421 3.30e-79 242
MsG0180005964.01.T01 MTR_8g104190 52.586 116 40 4 64 171 289 397 9.09e-23 93.6
MsG0180005964.01.T01 MTR_7g032240 36.957 138 45 4 67 171 220 348 7.97e-15 71.2
MsG0180005964.01.T01 MTR_5g072780 77.500 40 9 0 132 171 174 213 1.84e-13 65.9
MsG0180005964.01.T01 MTR_4g127420 42.268 97 45 2 72 168 293 378 4.03e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005964.01.T01 AT1G68520 54.386 114 47 4 62 171 284 396 9.52e-26 102
MsG0180005964.01.T01 AT1G25440 53.571 112 47 3 64 171 290 400 1.77e-24 98.6
MsG0180005964.01.T01 AT1G73870 45.736 129 44 4 57 171 268 384 1.65e-20 87.4
MsG0180005964.01.T01 AT5G57180 49.038 104 34 5 69 171 337 422 4.21e-17 78.2
MsG0180005964.01.T01 AT1G49130 32.934 167 102 4 15 171 144 310 1.17e-16 76.3
MsG0180005964.01.T01 AT1G49130 32.934 167 102 4 15 171 151 317 1.44e-16 75.9
MsG0180005964.01.T01 AT4G25990 45.631 103 41 3 69 171 293 380 1.99e-16 75.9
MsG0180005964.01.T01 AT1G07050 38.983 118 54 2 54 171 91 190 1.42e-15 71.2
MsG0180005964.01.T01 AT5G57180 48.000 100 35 4 69 168 337 419 1.68e-15 73.6
MsG0180005964.01.T01 AT4G25990 45.000 100 40 3 69 168 293 377 7.59e-15 71.2
MsG0180005964.01.T01 AT4G25990 45.000 100 40 3 69 168 293 377 1.18e-14 70.9
MsG0180005964.01.T01 AT1G07050 38.261 115 53 2 54 168 91 187 8.84e-14 66.6
MsG0180005964.01.T01 AT5G14370 37.705 122 42 4 67 171 229 333 1.66e-13 67.4

Find 93 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATCTCCCTTTCATTCT+TGG 0.047078 1:+98200100 None:intergenic
TCTTGGTGTTCTTGCCTTCT+TGG 0.140899 1:+98202057 None:intergenic
GAAGAATTCATCACCATTAA+TGG 0.181921 1:+98202104 None:intergenic
TTTATTTATCAGGGAACTTT+TGG 0.200963 1:-98200290 MsG0180005964.01.T01:intron
TGAAAATAATGATTATAATA+AGG 0.203891 1:-98201403 MsG0180005964.01.T01:CDS
TTCTCATCAGCATCCAAATT+TGG 0.222169 1:+98201292 None:intergenic
TTTGCTAAAAGTAAGAATTT+TGG 0.224199 1:-98199982 MsG0180005964.01.T01:three_prime_UTR
TTGGTTTGAGTGAACTTTAT+TGG 0.251329 1:-98199889 MsG0180005964.01.T01:three_prime_UTR
TATGGTGAGTTTGGTGGATA+TGG 0.266281 1:-98200250 MsG0180005964.01.T01:CDS
TAATGGTGACAAGCCAAATT+TGG 0.271510 1:-98201305 MsG0180005964.01.T01:CDS
CTGCCTCCATCTACCGTTAC+TGG 0.277791 1:+98200220 None:intergenic
ATGAGGCGCAACTTCTTTAC+AGG 0.278532 1:-98201910 MsG0180005964.01.T01:five_prime_UTR
GAAAATAATGATTATAATAA+GGG 0.279237 1:-98201402 MsG0180005964.01.T01:CDS
GCGTCGTACAAGTCCATTAA+TGG 0.290118 1:-98202117 MsG0180005964.01.T01:five_prime_UTR
CTCAACATCAGCTGCAAATT+CGG 0.302034 1:+98201676 None:intergenic
TTCTTGGTGAAGCCAGAAAA+AGG 0.344434 1:+98202073 None:intergenic
GGTTGTTCTCAAAGAAAATA+AGG 0.347288 1:-98200156 MsG0180005964.01.T01:CDS
TTTCATCTTGTGCCGGAGTT+AGG 0.348067 1:-98201968 MsG0180005964.01.T01:five_prime_UTR
TCATTAGCTTATGGTGAGTT+TGG 0.348932 1:-98200259 MsG0180005964.01.T01:CDS
AGCAACAGAAGGATCGAAAA+TGG 0.358529 1:+98201884 None:intergenic
GAACGGAGGTCATTAGCTTA+TGG 0.361834 1:-98200268 MsG0180005964.01.T01:CDS
AGCTGATGTTGAGAGCTTAT+TGG 0.374691 1:-98201666 MsG0180005964.01.T01:exon
AGAAAATAAGGTACGAGGTT+AGG 0.382846 1:-98200144 MsG0180005964.01.T01:CDS
GGTTAGAAAATGAGTGTATA+GGG 0.383981 1:-98201639 MsG0180005964.01.T01:CDS
CCAAAGTGTCCCTGGACTAA+TGG 0.384207 1:-98201322 MsG0180005964.01.T01:CDS
GCTGATGTTGAGAGCTTATT+GGG 0.387210 1:-98201665 MsG0180005964.01.T01:exon
AGGTTAGAAAATGAGTGTAT+AGG 0.395364 1:-98201640 MsG0180005964.01.T01:CDS
TGTCATCCAGTAACGGTAGA+TGG 0.408098 1:-98200226 MsG0180005964.01.T01:CDS
GAAGGCAAGAACACCAAGAC+AGG 0.424009 1:-98202053 MsG0180005964.01.T01:five_prime_UTR
GCAGAGAGGCAAGGGTTTCA+AGG 0.431755 1:-98200201 MsG0180005964.01.T01:CDS
TGTATAGGGATGGAAGAGTT+GGG 0.440723 1:-98201625 MsG0180005964.01.T01:CDS
TGAAAGGGAGATTGTGAAGA+GGG 0.444706 1:-98200093 MsG0180005964.01.T01:exon
ATAAATTATACCATGCAATC+AGG 0.445629 1:+98201265 None:intergenic
AACTCCGGCACAAGATGAAA+CGG 0.453947 1:+98201971 None:intergenic
GATTTGTGTTTCCCCTGTCT+TGG 0.455579 1:+98202040 None:intergenic
ATTTGGATGCTGATGAGAAC+TGG 0.465263 1:-98201288 MsG0180005964.01.T01:CDS
GTGTATAGGGATGGAAGAGT+TGG 0.474392 1:-98201626 MsG0180005964.01.T01:CDS
TGGCTTGTCACCATTAGTCC+AGG 0.479305 1:+98201312 None:intergenic
TGTTGAGAGCTTATTGGGTA+AGG 0.482709 1:-98201660 MsG0180005964.01.T01:CDS
GCTGTTGAGGCAAAACTGCT+AGG 0.484602 1:-98202278 None:intergenic
AGTGAGAAGTGGAAGTGTAG+TGG 0.486251 1:-98201577 MsG0180005964.01.T01:CDS
CCTTCAGTTGGTTCAACTGA+AGG 0.490709 1:-98201843 MsG0180005964.01.T01:five_prime_UTR
TGTACTAGTCCTCCTTCAGT+TGG 0.493939 1:-98201855 MsG0180005964.01.T01:five_prime_UTR
AGTGGAAAGGTGAAGGAAGA+AGG 0.494618 1:-98201559 MsG0180005964.01.T01:CDS
TGGGATAGCCAAAGTGTCCC+TGG 0.497715 1:-98201330 MsG0180005964.01.T01:CDS
TTAGCTTATGGTGAGTTTGG+TGG 0.499882 1:-98200256 MsG0180005964.01.T01:CDS
CCATTAGTCCAGGGACACTT+TGG 0.506889 1:+98201322 None:intergenic
AGATGGAGGCAGAGAGGCAA+GGG 0.513332 1:-98200209 MsG0180005964.01.T01:CDS
GAGAAGAGACCAAGAATGAA+AGG 0.514881 1:-98200109 MsG0180005964.01.T01:CDS
ATATTATTATTATTCCTCGC+TGG 0.519712 1:+98201995 None:intergenic
ATGAAAGGGAGATTGTGAAG+AGG 0.520219 1:-98200094 MsG0180005964.01.T01:exon
GGTTCAACTGAAGGAGGACT+AGG 0.524616 1:-98201834 MsG0180005964.01.T01:five_prime_UTR
ACTCCGGCACAAGATGAAAC+GGG 0.530371 1:+98201972 None:intergenic
AACTGTTTATATATACAAAG+TGG 0.532808 1:+98199920 None:intergenic
AAATTCACATGACGAAAATG+AGG 0.559316 1:-98201927 MsG0180005964.01.T01:five_prime_UTR
CTGTTGAGGCAAAACTGCTA+GGG 0.565567 1:-98202277 None:intergenic
ATGATGCAGTAATCATTGCA+TGG 0.567325 1:-98201350 MsG0180005964.01.T01:CDS
TCGGCTAATTCAATATCAGA+TGG 0.569236 1:+98201695 None:intergenic
AGAAGAGACCAAGAATGAAA+GGG 0.570209 1:-98200108 MsG0180005964.01.T01:CDS
GAAGTGTAGTGGAAAGGTGA+AGG 0.573136 1:-98201566 MsG0180005964.01.T01:CDS
TGATGCAGTAATCATTGCAT+GGG 0.576146 1:-98201349 MsG0180005964.01.T01:CDS
AGCATGAGGAGAGTGAGAAG+TGG 0.578354 1:-98201588 MsG0180005964.01.T01:CDS
CCTCGCTGGTTCACTGCTCG+AGG 0.578376 1:+98202009 None:intergenic
TAGATGGAGGCAGAGAGGCA+AGG 0.578587 1:-98200210 MsG0180005964.01.T01:CDS
GGCTTGTCACCATTAGTCCA+GGG 0.579867 1:+98201313 None:intergenic
AAAATAATGATTATAATAAG+GGG 0.580910 1:-98201401 MsG0180005964.01.T01:CDS
TCAGTTGGTTCAACTGAAGG+AGG 0.585447 1:-98201840 MsG0180005964.01.T01:five_prime_UTR
AGAAAATGAGTGTATAGGGA+TGG 0.586862 1:-98201635 MsG0180005964.01.T01:CDS
TATCCCGTTTCATCTTGTGC+CGG 0.588273 1:-98201975 MsG0180005964.01.T01:five_prime_UTR
TAGTGATAATAATTATGAGA+TGG 0.589411 1:-98201738 MsG0180005964.01.T01:five_prime_UTR
ACTGTTTATATATACAAAGT+GGG 0.590451 1:+98199921 None:intergenic
AGGAAATGTTGGAACTGCAA+AGG 0.601959 1:+98200067 None:intergenic
CCTTCAGTTGAACCAACTGA+AGG 0.603328 1:+98201843 None:intergenic
TGAGAACTGGCCTGATTGCA+TGG 0.605682 1:-98201275 MsG0180005964.01.T01:intron
TCAGTTGAACCAACTGAAGG+AGG 0.611596 1:+98201846 None:intergenic
GAAGAGGTGAAGGTGAAGTG+TGG 0.614664 1:-98201435 MsG0180005964.01.T01:intron
ATTGATTGATACAAAGCATG+AGG 0.625826 1:-98201602 MsG0180005964.01.T01:CDS
GTACATAATTCAGCAACAGA+AGG 0.631423 1:+98201873 None:intergenic
CTCAAAGAAAATAAGGTACG+AGG 0.632554 1:-98200149 MsG0180005964.01.T01:CDS
TGGTGATGAATTCTTCATTG+TGG 0.635811 1:-98202097 MsG0180005964.01.T01:five_prime_UTR
AACGGTAGATGGAGGCAGAG+AGG 0.643178 1:-98200215 MsG0180005964.01.T01:CDS
ACAGAGAAAAGCGAAGAACA+AGG 0.643427 1:-98200177 MsG0180005964.01.T01:CDS
AGGCAAGAACACCAAGACAG+GGG 0.648532 1:-98202051 MsG0180005964.01.T01:five_prime_UTR
GAAGTGGAAGTGTAGTGGAA+AGG 0.652932 1:-98201572 MsG0180005964.01.T01:CDS
AAGGCAAGAACACCAAGACA+GGG 0.653824 1:-98202052 MsG0180005964.01.T01:five_prime_UTR
ACTTCATCGAAACCTAACTC+CGG 0.656115 1:+98201956 None:intergenic
AACTGAAGGAGGACTAGGAG+TGG 0.656485 1:-98201829 MsG0180005964.01.T01:five_prime_UTR
ATATGGATGTCATCCAGTAA+CGG 0.662808 1:-98200233 MsG0180005964.01.T01:CDS
TGAGGCGCAACTTCTTTACA+GGG 0.664773 1:-98201909 MsG0180005964.01.T01:five_prime_UTR
AGCGAAAGCAGAGTTCAACT+AGG 0.665722 1:-98201761 MsG0180005964.01.T01:five_prime_UTR
CATCCAGTAACGGTAGATGG+AGG 0.676181 1:-98200223 MsG0180005964.01.T01:CDS
CCTCGAGCAGTGAACCAGCG+AGG 0.723417 1:-98202009 MsG0180005964.01.T01:five_prime_UTR
GCATAACAAAGAGAGCACGT+TGG 0.777160 1:-98202242 MsG0180005964.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGATTATAATAAG+GGG - Chr1:98200725-98200744 MsG0180005964.01.T01:intron 10.0%
!! AAATAAAAATCTAATGTATT+TGG + Chr1:98201009-98201028 None:intergenic 10.0%
!! AGAAAAAATTGTAAAAAATT+GGG - Chr1:98201498-98201517 MsG0180005964.01.T01:intron 10.0%
!! GAAAATAATGATTATAATAA+GGG - Chr1:98200724-98200743 MsG0180005964.01.T01:intron 10.0%
!! TGAAAATAATGATTATAATA+AGG - Chr1:98200723-98200742 MsG0180005964.01.T01:intron 10.0%
!!! ATTTTTTCAGATTTTTTTTA+AGG + Chr1:98201408-98201427 None:intergenic 10.0%
!! AAATACTAACAAAAAAGATT+AGG + Chr1:98202127-98202146 None:intergenic 15.0%
!! AATACTAACAAAAAAGATTA+GGG + Chr1:98202126-98202145 None:intergenic 15.0%
!! GAAAAAATTGTAAAAAATTG+GGG - Chr1:98201499-98201518 MsG0180005964.01.T01:intron 15.0%
!! GAGAAAAAATTGTAAAAAAT+TGG - Chr1:98201497-98201516 MsG0180005964.01.T01:intron 15.0%
!!! CTAAAAAAACTGAAATTTTT+TGG - Chr1:98201475-98201494 MsG0180005964.01.T01:intron 15.0%
!!! CTTTCTATCAAATTTTATAA+AGG - Chr1:98201771-98201790 MsG0180005964.01.T01:five_prime_UTR 15.0%
!!! TATATCTTAATTTTTCTTCA+TGG - Chr1:98200881-98200900 MsG0180005964.01.T01:intron 15.0%
!! AACTGTTTATATATACAAAG+TGG + Chr1:98202209-98202228 None:intergenic 20.0%
!! ACTGTTTATATATACAAAGT+GGG + Chr1:98202208-98202227 None:intergenic 20.0%
!! ATACTAACAAAAAAGATTAG+GGG + Chr1:98202125-98202144 None:intergenic 20.0%
!! ATTTGATAGAAAGAAAAAAG+TGG + Chr1:98201764-98201783 None:intergenic 20.0%
!! TAGTGATAATAATTATGAGA+TGG - Chr1:98200388-98200407 MsG0180005964.01.T01:intron 20.0%
!!! CTTTTTTACTGTTAGATTAA+TGG - Chr1:98201190-98201209 MsG0180005964.01.T01:intron 20.0%
!!! TTTGCTAAAAGTAAGAATTT+TGG - Chr1:98202144-98202163 MsG0180005964.01.T01:five_prime_UTR 20.0%
! AAAAAATTGGGGAAAAATCT+GGG - Chr1:98201510-98201529 MsG0180005964.01.T01:intron 25.0%
! AAGGAAAAAAAATATAAGCC+AGG - Chr1:98201545-98201564 MsG0180005964.01.T01:CDS 25.0%
! AGGAAAAAAAATATAAGCCA+GGG - Chr1:98201546-98201565 MsG0180005964.01.T01:CDS 25.0%
! ATAAATTATACCATGCAATC+AGG + Chr1:98200864-98200883 None:intergenic 25.0%
! ATATTATTATTATTCCTCGC+TGG + Chr1:98200134-98200153 None:intergenic 25.0%
! ATTAAGCCTAGATTAATCAT+TGG - Chr1:98201738-98201757 MsG0180005964.01.T01:five_prime_UTR 25.0%
! TAAAAAATTGGGGAAAAATC+TGG - Chr1:98201509-98201528 MsG0180005964.01.T01:intron 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG + Chr1:98201390-98201409 None:intergenic 25.0%
! TCAATCCTTTAGTTAATGAT+TGG - Chr1:98200923-98200942 MsG0180005964.01.T01:intron 25.0%
! TGATACCAATCATTAACTAA+AGG + Chr1:98200931-98200950 None:intergenic 25.0%
! TTAACTGATTAAACTTTGCA+GGG - Chr1:98201645-98201664 MsG0180005964.01.T01:CDS 25.0%
! TTAACTGATTAAACTTTGCA+GGG + Chr1:98201664-98201645 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG + Chr1:98201391-98201410 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG - Chr1:98201644-98201663 MsG0180005964.01.T01:CDS 25.0%
! TTTAACTGATTAAACTTTGC+AGG + Chr1:98201663-98201644 None:intergenic 25.0%
!! CAAAACTACAAACAATTTTG+AGG - Chr1:98202274-98202293 MsG0180005964.01.T01:five_prime_UTR 25.0%
!! TTTATTTATCAGGGAACTTT+TGG - Chr1:98201836-98201855 MsG0180005964.01.T01:five_prime_UTR 25.0%
!!! AGCTCTTATTATTTTAGCAA+AGG + Chr1:98202082-98202101 None:intergenic 25.0%
!!! ATCTGGGAAAAATTTTTTGA+AGG - Chr1:98201526-98201545 MsG0180005964.01.T01:intron 25.0%
!!! TATAAACAGTTTTGTGCAAT+TGG - Chr1:98202218-98202237 MsG0180005964.01.T01:five_prime_UTR 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG + Chr1:98202073-98202092 None:intergenic 25.0%
!!! TCTCATTGTTTTTAAACATC+AGG + Chr1:98200346-98200365 None:intergenic 25.0%
AAATTCACATGACGAAAATG+AGG - Chr1:98200199-98200218 MsG0180005964.01.T01:CDS 30.0%
AAGAGAACTATGAAATTGTG+AGG - Chr1:98200592-98200611 MsG0180005964.01.T01:intron 30.0%
AAGGAAAAAAAATAAGCCAG+GGG + Chr1:98201389-98201408 None:intergenic 30.0%
ACATCAGCAATTACCAAAAA+TGG + Chr1:98201592-98201611 None:intergenic 30.0%
AGAGAACTATGAAATTGTGA+GGG - Chr1:98200593-98200612 MsG0180005964.01.T01:intron 30.0%
AGGTTAGAAAATGAGTGTAT+AGG - Chr1:98200486-98200505 MsG0180005964.01.T01:intron 30.0%
ATTGATTGATACAAAGCATG+AGG - Chr1:98200524-98200543 MsG0180005964.01.T01:intron 30.0%
GAAGAATTCATCACCATTAA+TGG + Chr1:98200025-98200044 None:intergenic 30.0%
GGAAAAAAAATATAAGCCAG+GGG - Chr1:98201547-98201566 MsG0180005964.01.T01:CDS 30.0%
GGTTAGAAAATGAGTGTATA+GGG - Chr1:98200487-98200506 MsG0180005964.01.T01:intron 30.0%
GGTTGTTCTCAAAGAAAATA+AGG - Chr1:98201970-98201989 MsG0180005964.01.T01:five_prime_UTR 30.0%
TAACTGATTAAACTTTGCAG+GGG + Chr1:98201665-98201646 None:intergenic 30.0%
! TTGGTTTGAGTGAACTTTAT+TGG - Chr1:98202237-98202256 MsG0180005964.01.T01:five_prime_UTR 30.0%
!!! ATTTTTGGTAATTGCTGATG+TGG - Chr1:98201591-98201610 MsG0180005964.01.T01:CDS 30.0%
AAGTGGCCAATGATTAATCT+AGG + Chr1:98201747-98201766 None:intergenic 35.0%
ACAGTAAAAAAGTGAACAGC+AGG + Chr1:98201182-98201201 None:intergenic 35.0%
ACTTTGCAGGGCAAAAAAAA+AGG - Chr1:98201657-98201676 MsG0180005964.01.T01:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG - Chr1:98201982-98202001 MsG0180005964.01.T01:five_prime_UTR 35.0%
AGAAAATGAGTGTATAGGGA+TGG - Chr1:98200491-98200510 MsG0180005964.01.T01:intron 35.0%
AGAAGAGACCAAGAATGAAA+GGG - Chr1:98202018-98202037 MsG0180005964.01.T01:five_prime_UTR 35.0%
AGCAATTACCAAAAATGGCA+TGG + Chr1:98201587-98201606 None:intergenic 35.0%
AGCAATTTACCAAAATGGCA+TGG - Chr1:98201348-98201367 MsG0180005964.01.T01:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG - Chr1:98201893-98201912 MsG0180005964.01.T01:five_prime_UTR 35.0%
ATCTCATGAAACACTTGAAG+AGG - Chr1:98200675-98200694 MsG0180005964.01.T01:intron 35.0%
ATGATGCAGTAATCATTGCA+TGG - Chr1:98200776-98200795 MsG0180005964.01.T01:intron 35.0%
CTCAAAGAAAATAAGGTACG+AGG - Chr1:98201977-98201996 MsG0180005964.01.T01:five_prime_UTR 35.0%
GCAATTACCAAAAATGGCAT+GGG + Chr1:98201586-98201605 None:intergenic 35.0%
GCAATTTACCAAAATGGCAT+GGG - Chr1:98201349-98201368 MsG0180005964.01.T01:CDS 35.0%
GTACATAATTCAGCAACAGA+AGG + Chr1:98200256-98200275 None:intergenic 35.0%
GTTATTTGTCCCTGCAAATA+GGG + Chr1:98201716-98201735 None:intergenic 35.0%
TAATGGTGACAAGCCAAATT+TGG - Chr1:98200821-98200840 MsG0180005964.01.T01:intron 35.0%
TCGGCTAATTCAATATCAGA+TGG + Chr1:98200434-98200453 None:intergenic 35.0%
TGATGCAGTAATCATTGCAT+GGG - Chr1:98200777-98200796 MsG0180005964.01.T01:intron 35.0%
TTATTTGTCCCTGCAAATAG+GGG + Chr1:98201715-98201734 None:intergenic 35.0%
TTCTCATCAGCATCCAAATT+TGG + Chr1:98200837-98200856 None:intergenic 35.0%
TTGTGAGGGAGATAATATGA+TGG - Chr1:98200607-98200626 MsG0180005964.01.T01:intron 35.0%
TTTGCAGGGGCAAAAAAAAA+AGG + Chr1:98201279-98201298 None:intergenic 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - Chr1:98201672-98201691 MsG0180005964.01.T01:exon 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + Chr1:98201691-98201672 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - Chr1:98201673-98201692 MsG0180005964.01.T01:exon 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + Chr1:98201692-98201673 None:intergenic 35.0%
! GGAGATAATATGATGGAGAT+TGG - Chr1:98200614-98200633 MsG0180005964.01.T01:intron 35.0%
! TCATTAGCTTATGGTGAGTT+TGG - Chr1:98201867-98201886 MsG0180005964.01.T01:five_prime_UTR 35.0%
! TGGTGATGAATTCTTCATTG+TGG - Chr1:98200029-98200048 MsG0180005964.01.T01:three_prime_UTR 35.0%
! TGTGATTTTTGACACACTCA+TGG - Chr1:98200978-98200997 MsG0180005964.01.T01:intron 35.0%
! TGTTATTTGTCCCTGCAAAT+AGG + Chr1:98201717-98201736 None:intergenic 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG - Chr1:98201841-98201860 MsG0180005964.01.T01:five_prime_UTR 35.0%
!!! ATGCCATTTTGGTAAATTGC+TGG + Chr1:98201349-98201368 None:intergenic 35.0%
ACAGAGAAAAGCGAAGAACA+AGG - Chr1:98201949-98201968 MsG0180005964.01.T01:five_prime_UTR 40.0%
ACGCCAGCAATTTACCAAAA+TGG - Chr1:98201343-98201362 MsG0180005964.01.T01:CDS 40.0%
ACTTCATCGAAACCTAACTC+CGG + Chr1:98200173-98200192 None:intergenic 40.0%
AGCAACAGAAGGATCGAAAA+TGG + Chr1:98200245-98200264 None:intergenic 40.0%
AGCTGATGTTGAGAGCTTAT+TGG - Chr1:98200460-98200479 MsG0180005964.01.T01:intron 40.0%
AGGAAATGTTGGAACTGCAA+AGG + Chr1:98202062-98202081 None:intergenic 40.0%
ATGAAAGGGAGATTGTGAAG+AGG - Chr1:98202032-98202051 MsG0180005964.01.T01:five_prime_UTR 40.0%
ATTTGGATGCTGATGAGAAC+TGG - Chr1:98200838-98200857 MsG0180005964.01.T01:intron 40.0%
CACAATCTCCCTTTCATTCT+TGG + Chr1:98202029-98202048 None:intergenic 40.0%
CAGTGATTAACTGGGTCAAA+GGG - Chr1:98201614-98201633 MsG0180005964.01.T01:CDS 40.0%
CTCAACATCAGCTGCAAATT+CGG + Chr1:98200453-98200472 None:intergenic 40.0%
GAGAAGAGACCAAGAATGAA+AGG - Chr1:98202017-98202036 MsG0180005964.01.T01:five_prime_UTR 40.0%
GCTGATGTTGAGAGCTTATT+GGG - Chr1:98200461-98200480 MsG0180005964.01.T01:intron 40.0%
GGAATTGACTAAAATACCCC+TGG - Chr1:98201370-98201389 MsG0180005964.01.T01:CDS 40.0%
TGAAACACTTGAAGAGGTGA+AGG - Chr1:98200681-98200700 MsG0180005964.01.T01:intron 40.0%
TGAAAGGGAGATTGTGAAGA+GGG - Chr1:98202033-98202052 MsG0180005964.01.T01:five_prime_UTR 40.0%
TGATGTGGCAGTGATTAACT+GGG - Chr1:98201606-98201625 MsG0180005964.01.T01:CDS 40.0%
TGTATAGGGATGGAAGAGTT+GGG - Chr1:98200501-98200520 MsG0180005964.01.T01:intron 40.0%
TGTTGAGAGCTTATTGGGTA+AGG - Chr1:98200466-98200485 MsG0180005964.01.T01:intron 40.0%
TTAGCTTATGGTGAGTTTGG+TGG - Chr1:98201870-98201889 MsG0180005964.01.T01:five_prime_UTR 40.0%
TTCTTGGTGAAGCCAGAAAA+AGG + Chr1:98200056-98200075 None:intergenic 40.0%
TTTAAGCGACCCTATTTGCA+GGG + Chr1:98201233-98201252 None:intergenic 40.0%
! CTTCATTGTGGTCCTTTTTC+TGG - Chr1:98200041-98200060 MsG0180005964.01.T01:three_prime_UTR 40.0%
! TATGGTGAGTTTGGTGGATA+TGG - Chr1:98201876-98201895 MsG0180005964.01.T01:five_prime_UTR 40.0%
! TTGATTCGTCCCTGCAAATA+GGG - Chr1:98201221-98201240 MsG0180005964.01.T01:intron 40.0%
! TTTTAAGCGACCCTATTTGC+AGG + Chr1:98201234-98201253 None:intergenic 40.0%
!! AGTCAATTCCCATGCCATTT+TGG + Chr1:98201360-98201379 None:intergenic 40.0%
!! ATTGATTCGTCCCTGCAAAT+AGG - Chr1:98201220-98201239 MsG0180005964.01.T01:intron 40.0%
!! ATTTTGGTAAATTGCTGGCG+TGG + Chr1:98201344-98201363 None:intergenic 40.0%
!!! GTCAATTCCCATGCCATTTT+TGG - Chr1:98201576-98201595 MsG0180005964.01.T01:CDS 40.0%
!!! TTTTTCTGGCTTCACCAAGA+AGG - Chr1:98200055-98200074 MsG0180005964.01.T01:three_prime_UTR 40.0%
AACTCCGGCACAAGATGAAA+CGG + Chr1:98200158-98200177 None:intergenic 45.0%
AAGGCAAGAACACCAAGACA+GGG - Chr1:98200074-98200093 MsG0180005964.01.T01:three_prime_UTR 45.0%
AGCGAAAGCAGAGTTCAACT+AGG - Chr1:98200365-98200384 MsG0180005964.01.T01:intron 45.0%
AGTGGAAAGGTGAAGGAAGA+AGG - Chr1:98200567-98200586 MsG0180005964.01.T01:intron 45.0%
ATGAGGCGCAACTTCTTTAC+AGG - Chr1:98200216-98200235 MsG0180005964.01.T01:CDS 45.0%
CCTTCAGTTGAACCAACTGA+AGG + Chr1:98200286-98200305 None:intergenic 45.0%
CTGATGTGGCAGTGATTAAC+TGG - Chr1:98201605-98201624 MsG0180005964.01.T01:CDS 45.0%
GATTTGTGTTTCCCCTGTCT+TGG + Chr1:98200089-98200108 None:intergenic 45.0%
GCAGGTCTAACACAAGTGAA+TGG + Chr1:98201164-98201183 None:intergenic 45.0%
GCAGTGATTAACTGGGTCAA+AGG - Chr1:98201613-98201632 MsG0180005964.01.T01:CDS 45.0%
GCGTCGTACAAGTCCATTAA+TGG - Chr1:98200009-98200028 MsG0180005964.01.T01:three_prime_UTR 45.0%
GTGTATAGGGATGGAAGAGT+TGG - Chr1:98200500-98200519 MsG0180005964.01.T01:intron 45.0%
TATCCCGTTTCATCTTGTGC+CGG - Chr1:98200151-98200170 MsG0180005964.01.T01:CDS 45.0%
TCAGTTGAACCAACTGAAGG+AGG + Chr1:98200283-98200302 None:intergenic 45.0%
TGAGGCGCAACTTCTTTACA+GGG - Chr1:98200217-98200236 MsG0180005964.01.T01:CDS 45.0%
TGTACTAGTCCTCCTTCAGT+TGG - Chr1:98200271-98200290 MsG0180005964.01.T01:CDS 45.0%
TGTCATCCAGTAACGGTAGA+TGG - Chr1:98201900-98201919 MsG0180005964.01.T01:five_prime_UTR 45.0%
TTAAGCGACCCCTATTTGCA+GGG - Chr1:98201704-98201723 MsG0180005964.01.T01:five_prime_UTR 45.0%
TTTAAGCGACCCCTATTTGC+AGG - Chr1:98201703-98201722 MsG0180005964.01.T01:five_prime_UTR 45.0%
TTTCATCTTGTGCCGGAGTT+AGG - Chr1:98200158-98200177 MsG0180005964.01.T01:CDS 45.0%
! AGTGAGAAGTGGAAGTGTAG+TGG - Chr1:98200549-98200568 MsG0180005964.01.T01:intron 45.0%
! CCTTCAGTTGGTTCAACTGA+AGG - Chr1:98200283-98200302 MsG0180005964.01.T01:intron 45.0%
! GAACGGAGGTCATTAGCTTA+TGG - Chr1:98201858-98201877 MsG0180005964.01.T01:five_prime_UTR 45.0%
! GAAGTGGAAGTGTAGTGGAA+AGG - Chr1:98200554-98200573 MsG0180005964.01.T01:intron 45.0%
! GAAGTGTAGTGGAAAGGTGA+AGG - Chr1:98200560-98200579 MsG0180005964.01.T01:intron 45.0%
! GCATAACAAAGAGAGCACGT+TGG - Chr1:98199884-98199903 MsG0180005964.01.T01:three_prime_UTR 45.0%
! TCAGTTGGTTCAACTGAAGG+AGG - Chr1:98200286-98200305 MsG0180005964.01.T01:intron 45.0%
! TGGCAGTGATTAATGGGTCA+AGG + Chr1:98201324-98201343 None:intergenic 45.0%
!! TCTTGGTGTTCTTGCCTTCT+TGG + Chr1:98200072-98200091 None:intergenic 45.0%
!! ATTAAAAATCAAAAAAAATT+CGG - Chr1:98201429-98201448 MsG0180005964.01.T01:intron 5.0%
!!! AATTTAATTTTTATTTATCA+GGG - Chr1:98201827-98201846 MsG0180005964.01.T01:five_prime_UTR 5.0%
!!! TAATTTAATTTTTATTTATC+AGG - Chr1:98201826-98201845 MsG0180005964.01.T01:five_prime_UTR 5.0%
AACTGAAGGAGGACTAGGAG+TGG - Chr1:98200297-98200316 MsG0180005964.01.T01:intron 50.0%
ACTCCGGCACAAGATGAAAC+GGG + Chr1:98200157-98200176 None:intergenic 50.0%
AGCATGAGGAGAGTGAGAAG+TGG - Chr1:98200538-98200557 MsG0180005964.01.T01:intron 50.0%
AGGCAAGAACACCAAGACAG+GGG - Chr1:98200075-98200094 MsG0180005964.01.T01:three_prime_UTR 50.0%
CATCCAGTAACGGTAGATGG+AGG - Chr1:98201903-98201922 MsG0180005964.01.T01:five_prime_UTR 50.0%
CCATTAGTCCAGGGACACTT+TGG + Chr1:98200807-98200826 None:intergenic 50.0%
CTGGCGTGGCAGTGATTAAT+GGG + Chr1:98201330-98201349 None:intergenic 50.0%
GAAGAGGTGAAGGTGAAGTG+TGG - Chr1:98200691-98200710 MsG0180005964.01.T01:intron 50.0%
GAAGGCAAGAACACCAAGAC+AGG - Chr1:98200073-98200092 MsG0180005964.01.T01:three_prime_UTR 50.0%
GGCTTGTCACCATTAGTCCA+GGG + Chr1:98200816-98200835 None:intergenic 50.0%
GGGAATTGACGAAATACCCC+TGG + Chr1:98201566-98201585 None:intergenic 50.0%
GGTTCAACTGAAGGAGGACT+AGG - Chr1:98200292-98200311 MsG0180005964.01.T01:intron 50.0%
! CCAAAGTGTCCCTGGACTAA+TGG - Chr1:98200804-98200823 MsG0180005964.01.T01:intron 50.0%
! TGAGAACTGGCCTGATTGCA+TGG - Chr1:98200851-98200870 MsG0180005964.01.T01:intron 50.0%
! TGGCTTGTCACCATTAGTCC+AGG + Chr1:98200817-98200836 None:intergenic 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG - Chr1:98201844-98201863 MsG0180005964.01.T01:five_prime_UTR 50.0%
AACGGTAGATGGAGGCAGAG+AGG - Chr1:98201911-98201930 MsG0180005964.01.T01:five_prime_UTR 55.0%
AGATGGAGGCAGAGAGGCAA+GGG - Chr1:98201917-98201936 MsG0180005964.01.T01:five_prime_UTR 55.0%
CTGCCTCCATCTACCGTTAC+TGG + Chr1:98201909-98201928 None:intergenic 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG - Chr1:98201925-98201944 MsG0180005964.01.T01:five_prime_UTR 55.0%
GCTGGCGTGGCAGTGATTAA+TGG + Chr1:98201331-98201350 None:intergenic 55.0%
TAGATGGAGGCAGAGAGGCA+AGG - Chr1:98201916-98201935 MsG0180005964.01.T01:five_prime_UTR 55.0%
! TGGGATAGCCAAAGTGTCCC+TGG - Chr1:98200796-98200815 MsG0180005964.01.T01:intron 55.0%
CCTCGAGCAGTGAACCAGCG+AGG - Chr1:98200117-98200136 MsG0180005964.01.T01:CDS 65.0%
!! CCTCGCTGGTTCACTGCTCG+AGG + Chr1:98200120-98200139 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98199855 98202293 98199855 ID=MsG0180005964.01;Name=MsG0180005964.01
Chr1 mRNA 98199855 98202293 98199855 ID=MsG0180005964.01.T01;Parent=MsG0180005964.01;Name=MsG0180005964.01.T01;_AED=0.25;_eAED=0.25;_QI=610|0.5|0.33|1|1|1|3|244|171
Chr1 exon 98199855 98200300 98199855 ID=MsG0180005964.01.T01:exon:19686;Parent=MsG0180005964.01.T01
Chr1 exon 98201276 98201445 98201276 ID=MsG0180005964.01.T01:exon:19685;Parent=MsG0180005964.01.T01
Chr1 exon 98201540 98202293 98201540 ID=MsG0180005964.01.T01:exon:19684;Parent=MsG0180005964.01.T01
Chr1 five_prime_UTR 98201684 98202293 98201684 ID=MsG0180005964.01.T01:five_prime_utr;Parent=MsG0180005964.01.T01
Chr1 CDS 98201540 98201683 98201540 ID=MsG0180005964.01.T01:cds;Parent=MsG0180005964.01.T01
Chr1 CDS 98201276 98201445 98201276 ID=MsG0180005964.01.T01:cds;Parent=MsG0180005964.01.T01
Chr1 CDS 98200099 98200300 98200099 ID=MsG0180005964.01.T01:cds;Parent=MsG0180005964.01.T01
Chr1 three_prime_UTR 98199855 98200098 98199855 ID=MsG0180005964.01.T01:three_prime_utr;Parent=MsG0180005964.01.T01
Gene Sequence

>MsG0180005964.01.T01

ATGTTGAGAGCTTATTGGGTAAGGTTAGAAAATGAGTGTATAGGGATGGAAGAGTTGGGATTGATTGATACAAAGCATGAGGAGAGTGAGAAGTGGAAGTGTAGTGGAAAGGTGAAGGAAGAAGGTGAAGAGAACTATGAAATTGTGAAGTGTGGAGAACAAAATGAAAATAATGATTATAATAAGGGGAAAAGAAAAATATCTTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATAGCCAAAGTGTCCCTGGACTAATGGTGACAAGCCAAATTTGGATGCTGATGAGAACTGGCCTGATTGCATGGGAACTTTTGGAACGGAGGTCATTAGCTTATGGTGAGTTTGGTGGATATGGATGTCATCCAGTAACGGTAGATGGAGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTGTGA

Protein sequence

>MsG0180005964.01.T01

MLRAYWVRLENECIGMEELGLIDTKHEESEKWKCSGKVKEEGEENYEIVKCGEQNENNDYNKGKRKISLQLDYDAVIIAWDSQSVPGLMVTSQIWMLMRTGLIAWELLERRSLAYGEFGGYGCHPVTVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRL*