AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039686.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039686.01.T02 MTR_7g077340 75.214 117 28 1 1 116 4 120 3.04e-60 181
MsG0780039686.01.T02 MTR_7g077215 67.677 99 30 1 11 109 14 110 5.50e-42 134
MsG0780039686.01.T02 MTR_7g077210 56.034 116 41 5 1 109 4 116 3.86e-34 114
MsG0780039686.01.T02 MTR_7g077180 55.963 109 25 1 1 109 1 86 8.70e-34 112
MsG0780039686.01.T02 MTR_7g077310 54.808 104 43 2 9 109 1 103 4.58e-31 106
MsG0780039686.01.T02 MTR_7g077350 61.017 118 36 5 1 111 20 134 1.53e-29 103
MsG0780039686.01.T02 MTR_7g077300 52.137 117 47 4 1 116 1 109 3.01e-29 102
MsG0780039686.01.T02 MTR_7g077260 46.429 112 56 3 1 109 3 113 2.01e-27 97.8
MsG0780039686.01.T02 MTR_7g077220 51.579 95 34 1 9 103 2 84 7.35e-26 94.4
MsG0780039686.01.T02 MTR_7g077160 49.462 93 42 1 24 116 20 107 1.64e-24 90.1
MsG0780039686.01.T02 MTR_7g077190 54.098 61 28 0 51 111 21 81 2.70e-16 68.6
MsG0780039686.01.T02 MTR_7g077313 42.857 105 51 4 4 106 5 102 6.00e-16 68.2
MsG0780039686.01.T01 MTR_7g077340 71.667 120 30 2 1 119 4 120 1.06e-56 172
MsG0780039686.01.T01 MTR_7g077215 62.745 102 33 1 11 112 14 110 3.61e-39 127
MsG0780039686.01.T01 MTR_7g077350 63.559 118 36 4 1 114 20 134 1.78e-33 114
MsG0780039686.01.T01 MTR_7g077210 52.586 116 48 4 1 112 4 116 9.65e-32 108
MsG0780039686.01.T01 MTR_7g077180 51.786 112 28 1 1 112 1 86 2.76e-31 106
MsG0780039686.01.T01 MTR_7g077310 52.885 104 48 1 9 112 1 103 5.00e-31 106
MsG0780039686.01.T01 MTR_7g077300 49.167 120 49 4 1 119 1 109 6.11e-27 96.7
MsG0780039686.01.T01 MTR_7g077260 45.614 114 57 3 1 112 3 113 1.43e-26 95.5
MsG0780039686.01.T01 MTR_7g077160 48.958 96 41 1 24 119 20 107 3.47e-25 92.0
MsG0780039686.01.T01 MTR_7g077220 48.980 98 35 2 9 106 2 84 6.08e-23 87.0
MsG0780039686.01.T01 MTR_7g077190 56.140 57 25 0 58 114 25 81 2.93e-15 65.9
MsG0780039686.01.T01 MTR_7g077313 39.815 108 53 4 4 109 5 102 1.02e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 17 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTGTCACTGTGCTGATAT+TGG 0.334596 7:-67547421 MsG0780039686.01.T02:CDS
TGTCTCTTATCACATGCATA+TGG 0.447909 7:+67547248 None:intergenic
AACTTAGTGAGATCCACCTT+TGG 0.468934 7:+67547291 None:intergenic
CCACCTTTGGAGTAGCTACA+TGG 0.481606 7:+67547304 None:intergenic
ATCACTCGAGTGCTCTTCAA+TGG 0.489424 7:-67552174 MsG0780039686.01.T02:CDS
CCATGTAGCTACTCCAAAGG+TGG 0.604280 7:-67547304 MsG0780039686.01.T02:CDS
TCTTATCACATGCATATGGT+AGG 0.607791 7:+67547252 None:intergenic
CAGCACAGTGACACTGAGGA+GGG 0.627236 7:+67547428 None:intergenic
GAGGAAAAGATCTTGTGCAA+AGG 0.628614 7:+67547368 None:intergenic
TCAGCACAGTGACACTGAGG+AGG 0.630876 7:+67547427 None:intergenic
AATCACAGCATGCTGTTGTG+TGG 0.631133 7:+67547473 None:intergenic
GAACCATGTAGCTACTCCAA+AGG 0.655168 7:-67547307 MsG0780039686.01.T02:CDS
ACGAACATCAACAATAGTTG+CGG 0.656768 7:+67552215 None:intergenic
TCAGTGCAACGACACTGTGG+AGG 0.684993 7:+67547349 None:intergenic
TGGTTCATAGCAGAAGTCAG+TGG 0.693755 7:+67547324 None:intergenic
ATATCAGCACAGTGACACTG+AGG 0.763170 7:+67547424 None:intergenic
GTATCAGTGCAACGACACTG+TGG 0.776006 7:+67547346 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATAAAA+GGG + Chr7:67548048-67548067 None:intergenic 0.0%
!! TATATATATATATATATAAA+AGG + Chr7:67548049-67548068 None:intergenic 0.0%
!! AAAATTACAAATAAATTTGT+TGG - Chr7:67550580-67550599 MsG0780039686.01.T02:intron 10.0%
!! ATATATATATATCAATGTTA+TGG + Chr7:67550877-67550896 None:intergenic 10.0%
!! CTAAAAAGAAAATTAAATAA+GGG - Chr7:67550115-67550134 MsG0780039686.01.T02:intron 10.0%
!! TCTAAAAAGAAAATTAAATA+AGG - Chr7:67550114-67550133 MsG0780039686.01.T02:intron 10.0%
!! TTAAAGAAAAAATAATACTT+TGG + Chr7:67548924-67548943 None:intergenic 10.0%
!!! AAATTTTATAATATAGAACA+TGG - Chr7:67550408-67550427 MsG0780039686.01.T02:intron 10.0%
!!! TTCAACAAATTTTATTATAT+AGG - Chr7:67549152-67549171 MsG0780039686.01.T02:intron 10.0%
!!! TTTAATAAAAGTACTTATTA+AGG + Chr7:67551657-67551676 None:intergenic 10.0%
!! AATGATAACTCATAAATTTA+TGG - Chr7:67550296-67550315 MsG0780039686.01.T02:intron 15.0%
!! CATTAAATAACTAATGTATA+TGG + Chr7:67549372-67549391 None:intergenic 15.0%
!! TATTATTAGTATTAGAAACT+TGG + Chr7:67547897-67547916 None:intergenic 15.0%
!! TGTACATAGTATTAATTAAA+GGG + Chr7:67548895-67548914 None:intergenic 15.0%
!! TTATCAAATATCAATAATCA+AGG - Chr7:67550476-67550495 MsG0780039686.01.T02:intron 15.0%
!! TTGTTTAATATGTAAAGATA+GGG - Chr7:67551570-67551589 MsG0780039686.01.T02:intron 15.0%
!! TTTGTTTAATATGTAAAGAT+AGG - Chr7:67551569-67551588 MsG0780039686.01.T02:intron 15.0%
!!! AAAGTAAATTTAAAACATAG+TGG - Chr7:67548005-67548024 MsG0780039686.01.T02:intron 15.0%
!!! AAGTAAATTTAAAACATAGT+GGG - Chr7:67548006-67548025 MsG0780039686.01.T02:intron 15.0%
!!! ATTTTATTACTTTTTAAACG+TGG + Chr7:67551422-67551441 None:intergenic 15.0%
!!! CAAAAGAATGAATTTAAAAT+AGG + Chr7:67549746-67549765 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + Chr7:67548821-67548840 None:intergenic 15.0%
!!! TAAATGACATTCATTTTAAA+CGG - Chr7:67549038-67549057 MsG0780039686.01.T02:intron 15.0%
!!! TATATTTAAGTACTTTTCAT+TGG - Chr7:67551594-67551613 MsG0780039686.01.T02:intron 15.0%
!!! TTGAAATTTAGTTGTATTTT+AGG + Chr7:67549137-67549156 None:intergenic 15.0%
!!! TTTTATTACTTTTTAAACGT+GGG + Chr7:67551421-67551440 None:intergenic 15.0%
!!! TTTTTTTTTTTTGTTGTTGA+AGG - Chr7:67550185-67550204 MsG0780039686.01.T02:intron 15.0%
!! AAACGATTCTTCAAATTAAT+TGG - Chr7:67547856-67547875 MsG0780039686.01.T02:intron 20.0%
!! AATCTTATCATCTTAAGATT+TGG - Chr7:67551212-67551231 MsG0780039686.01.T02:intron 20.0%
!! AGTAATAAATATGTAGTACT+TGG - Chr7:67551472-67551491 MsG0780039686.01.T02:intron 20.0%
!! ATCTTATCATCTTAAGATTT+GGG - Chr7:67551213-67551232 MsG0780039686.01.T02:intron 20.0%
!! ATGATGTGAGATATATTAAA+TGG - Chr7:67549796-67549815 MsG0780039686.01.T02:intron 20.0%
!! CTAAAAGATACATTCATAAA+AGG - Chr7:67551042-67551061 MsG0780039686.01.T02:intron 20.0%
!! CTCATATTTACAATATCTTA+AGG - Chr7:67548181-67548200 MsG0780039686.01.T02:intron 20.0%
!! GTGTACATAGTATTAATTAA+AGG + Chr7:67548896-67548915 None:intergenic 20.0%
!! TAATATGTTTATTAAGCTTC+CGG + Chr7:67549470-67549489 None:intergenic 20.0%
!! TAATTAGATTCGAATTCTTT+CGG - Chr7:67547770-67547789 MsG0780039686.01.T02:intron 20.0%
!! TTATGAGTTATCATTTCAAA+TGG + Chr7:67550291-67550310 None:intergenic 20.0%
!!! AAAGTTTTTTTTTTTTTCCG+AGG - Chr7:67550822-67550841 MsG0780039686.01.T02:intron 20.0%
!!! AAGAATGAATTTAAAATAGG+TGG + Chr7:67549743-67549762 None:intergenic 20.0%
!!! AAGTTTTTTTTTTTTTCCGA+GGG - Chr7:67550823-67550842 MsG0780039686.01.T02:intron 20.0%
!!! ACTAATTTCTTATAACCTTT+TGG - Chr7:67548318-67548337 MsG0780039686.01.T02:intron 20.0%
!!! AGTAAATTTAAAACATAGTG+GGG - Chr7:67548007-67548026 MsG0780039686.01.T02:intron 20.0%
!!! AGTTTTTTACTGACATTTTA+AGG + Chr7:67550388-67550407 None:intergenic 20.0%
!!! ATATATATAAAAGGGTGTAT+GGG + Chr7:67548040-67548059 None:intergenic 20.0%
!!! ATTACAAATAAATTTGTTGG+TGG - Chr7:67550583-67550602 MsG0780039686.01.T02:intron 20.0%
!!! GTGAATAAATTAAAAGTATG+AGG - Chr7:67550073-67550092 MsG0780039686.01.T02:intron 20.0%
!!! TACCTTCTATATTTTTTGAA+AGG + Chr7:67550363-67550382 None:intergenic 20.0%
!!! TATATATATAAAAGGGTGTA+TGG + Chr7:67548041-67548060 None:intergenic 20.0%
!!! TTACAAATAAATTTGTTGGT+GGG - Chr7:67550584-67550603 MsG0780039686.01.T02:intron 20.0%
! AAAAAAAACAATTCATGTCG+AGG - Chr7:67547601-67547620 MsG0780039686.01.T02:intron 25.0%
! AAATTGGGAGATATTAACAT+AGG - Chr7:67550039-67550058 MsG0780039686.01.T02:intron 25.0%
! ACAATAATCATGCTTTAATC+CGG - Chr7:67549448-67549467 MsG0780039686.01.T02:intron 25.0%
! ACACCTTCATAAAAATTAGT+TGG - Chr7:67550987-67551006 MsG0780039686.01.T02:intron 25.0%
! AGAAAATGATAGAAGAAAGA+AGG - Chr7:67551765-67551784 MsG0780039686.01.T02:intron 25.0%
! ATGTTAATATCTCCCAATTT+CGG + Chr7:67550039-67550058 None:intergenic 25.0%
! GAAACTTGGTATTCAATTTA+AGG + Chr7:67547883-67547902 None:intergenic 25.0%
! GACCTTTCAAAAAATATAGA+AGG - Chr7:67550358-67550377 MsG0780039686.01.T02:intron 25.0%
! GCAAAGTTATAACTAAAAAG+TGG + Chr7:67550962-67550981 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - Chr7:67551432-67551451 MsG0780039686.01.T02:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG + Chr7:67551459-67551478 None:intergenic 25.0%
! TGATAATAACAAGAAGAAGA+AGG + Chr7:67547662-67547681 None:intergenic 25.0%
! TTATTACTTCTTATGCAAGT+GGG + Chr7:67551499-67551518 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + Chr7:67551460-67551479 None:intergenic 25.0%
! TTCACACAAAAAAAAATACG+AGG - Chr7:67550540-67550559 MsG0780039686.01.T02:intron 25.0%
! TTTATTACTTCTTATGCAAG+TGG + Chr7:67551500-67551519 None:intergenic 25.0%
!! ACACCAACTAATTTTTATGA+AGG + Chr7:67550993-67551012 None:intergenic 25.0%
!! CTATTACTCATTTTACAAGT+GGG + Chr7:67551539-67551558 None:intergenic 25.0%
!! CTTTCTTTGTGTTTAATTTC+AGG + Chr7:67549563-67549582 None:intergenic 25.0%
!! GTAAATTTAAAACATAGTGG+GGG - Chr7:67548008-67548027 MsG0780039686.01.T02:intron 25.0%
!! GTGCTAAACATTTTTATGTT+GGG - Chr7:67547792-67547811 MsG0780039686.01.T02:intron 25.0%
!! TCTATTACTCATTTTACAAG+TGG + Chr7:67551540-67551559 None:intergenic 25.0%
!! TTTGAGTTATATTTGTTTGG+AGG - Chr7:67549296-67549315 MsG0780039686.01.T02:intron 25.0%
!!! AGGATTTTCTTTTTTCGAAT+TGG - Chr7:67549172-67549191 MsG0780039686.01.T02:intron 25.0%
!!! AGTTTTGTATATATCAGTGT+GGG + Chr7:67550672-67550691 None:intergenic 25.0%
!!! GCTTTAGTAGCTTTATATTT+GGG - Chr7:67550618-67550637 MsG0780039686.01.T02:intron 25.0%
!!! GGATTTTCTTTTTTCGAATT+GGG - Chr7:67549173-67549192 MsG0780039686.01.T02:intron 25.0%
!!! GGTTTTGAGTTATATTTGTT+TGG - Chr7:67549293-67549312 MsG0780039686.01.T02:intron 25.0%
!!! TAGTTTTGTATATATCAGTG+TGG + Chr7:67550673-67550692 None:intergenic 25.0%
AAGGAACATGCAACTATATA+AGG - Chr7:67551369-67551388 MsG0780039686.01.T02:intron 30.0%
ATTTAAAGAGTCTACCATTG+TGG - Chr7:67551709-67551728 MsG0780039686.01.T02:intron 30.0%
CCAATGACAATACACTAATA+AGG + Chr7:67551623-67551642 None:intergenic 30.0%
CCTTATTAGTGTATTGTCAT+TGG - Chr7:67551620-67551639 MsG0780039686.01.T02:intron 30.0%
CTTACACTCCTCTAAATTAA+AGG + Chr7:67549264-67549283 None:intergenic 30.0%
GAAGGAAAAAAAAAACCTTG+AGG + Chr7:67547644-67547663 None:intergenic 30.0%
GCCTAAAACACTAGAATTAT+TGG + Chr7:67548256-67548275 None:intergenic 30.0%
TAAAACACTAATACCACTGT+TGG + Chr7:67548289-67548308 None:intergenic 30.0%
TATAGTTGCATGTTCCTTAA+CGG + Chr7:67551367-67551386 None:intergenic 30.0%
TATTGTAGATTGTTAGCTGT+TGG - Chr7:67551137-67551156 MsG0780039686.01.T02:intron 30.0%
TCGATACATAGGTCAAATTT+GGG - Chr7:67548391-67548410 MsG0780039686.01.T02:intron 30.0%
TGTATCTTTCTTTGTGATGT+AGG + Chr7:67551863-67551882 None:intergenic 30.0%
! ACAGTGGTATTAGTGTTTTA+CGG - Chr7:67548289-67548308 MsG0780039686.01.T02:intron 30.0%
! ATGACATTCATTTTAAACGG+AGG - Chr7:67549041-67549060 MsG0780039686.01.T02:intron 30.0%
! GCCAATAATTCTAGTGTTTT+AGG - Chr7:67548252-67548271 MsG0780039686.01.T02:intron 30.0%
! GGTGCTAAACATTTTTATGT+TGG - Chr7:67547791-67547810 MsG0780039686.01.T02:intron 30.0%
! TAAATTTTCGATATCCCACT+TGG + Chr7:67548606-67548625 None:intergenic 30.0%
! TAAGGTTTGAGATGAAGATT+TGG - Chr7:67548199-67548218 MsG0780039686.01.T02:intron 30.0%
!! AAACGACACTCATTTTGAAA+TGG + Chr7:67548795-67548814 None:intergenic 30.0%
!! AATGATGAAGTTAGCTTTGT+TGG - Chr7:67551934-67551953 MsG0780039686.01.T02:intron 30.0%
!! CGCTTTAGTAGCTTTATATT+TGG - Chr7:67550617-67550636 MsG0780039686.01.T02:intron 30.0%
!! TTATTTTTCACATGACCTCA+AGG - Chr7:67547626-67547645 MsG0780039686.01.T02:intron 30.0%
!!! TGTTTGGAGGCTTTTTTTTT+TGG - Chr7:67549309-67549328 MsG0780039686.01.T02:intron 30.0%
AAAATTAAATAAGGGCCACG+AGG - Chr7:67550123-67550142 MsG0780039686.01.T02:intron 35.0%
AAATAAGTGATGTGTCACGT+GGG - Chr7:67551683-67551702 MsG0780039686.01.T02:intron 35.0%
AACAAACTTTAGACTTCCCT+CGG + Chr7:67550842-67550861 None:intergenic 35.0%
AATTTATAGAGTGCAACCAG+GGG + Chr7:67551818-67551837 None:intergenic 35.0%
ACAGAAAGAGAGAGTAAGAA+TGG - Chr7:67551889-67551908 MsG0780039686.01.T02:intron 35.0%
ACATCTGCACAATAACAAGA+AGG + Chr7:67547543-67547562 None:intergenic 35.0%
ACGAACATCAACAATAGTTG+CGG + Chr7:67547321-67547340 None:intergenic 35.0%
AGAAAAATTACATGTACCCC+TGG - Chr7:67551799-67551818 MsG0780039686.01.T02:intron 35.0%
AGAAACAACATAAGTAGTGC+TGG + Chr7:67548228-67548247 None:intergenic 35.0%
ATACATTCATCACATGCCTA+CGG + Chr7:67551738-67551757 None:intergenic 35.0%
ATAGTTGCATGTTCCTTAAC+GGG + Chr7:67551366-67551385 None:intergenic 35.0%
ATGGAGGATCCAATTAAGTA+TGG + Chr7:67547823-67547842 None:intergenic 35.0%
ATGTGTTTGTTTGATCACGT+TGG - Chr7:67548467-67548486 MsG0780039686.01.T02:intron 35.0%
CAAATTTGACCTATGTATCG+AGG + Chr7:67548392-67548411 None:intergenic 35.0%
CAATGTATTTGTAGAGATGC+TGG - Chr7:67547464-67547483 MsG0780039686.01.T02:CDS 35.0%
CAATTTATAGAGTGCAACCA+GGG + Chr7:67551819-67551838 None:intergenic 35.0%
CATATCAAAACTCACACCAA+TGG + Chr7:67548527-67548546 None:intergenic 35.0%
CTCGATACATAGGTCAAATT+TGG - Chr7:67548390-67548409 MsG0780039686.01.T02:intron 35.0%
CTTTGCAAAGAGAAACCAAA+AGG + Chr7:67548336-67548355 None:intergenic 35.0%
GCATCTCTACAAATACATTG+AGG + Chr7:67547464-67547483 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG - Chr7:67551682-67551701 MsG0780039686.01.T02:intron 35.0%
TAGGAAACATGCAACTACAA+TGG + Chr7:67551844-67551863 None:intergenic 35.0%
TCAATTTATAGAGTGCAACC+AGG + Chr7:67551820-67551839 None:intergenic 35.0%
TGTGAGTGCTATGTAAAAGA+AGG - Chr7:67547428-67547447 MsG0780039686.01.T02:CDS 35.0%
TGTTTCATCCACAAATCTGT+TGG - Chr7:67550008-67550027 MsG0780039686.01.T02:intron 35.0%
TTAGTGCATATAGTGTGTGT+GGG - Chr7:67549084-67549103 MsG0780039686.01.T02:intron 35.0%
TTGGGAGATATTAACATAGG+AGG - Chr7:67550042-67550061 MsG0780039686.01.T02:intron 35.0%
TTTAGTGCATATAGTGTGTG+TGG - Chr7:67549083-67549102 MsG0780039686.01.T02:intron 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + Chr7:67551338-67551357 None:intergenic 35.0%
! ATTCTCTTGCTCTAGTTTGT+TGG + Chr7:67547718-67547737 None:intergenic 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + Chr7:67551337-67551356 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + Chr7:67551341-67551360 None:intergenic 35.0%
! TTCAGAGGCCTTTAATTTAG+AGG - Chr7:67549253-67549272 MsG0780039686.01.T02:intron 35.0%
!! AATTGTAAGAGCATCTCCAA+TGG - Chr7:67551274-67551293 MsG0780039686.01.T02:intron 35.0%
!! AGCTACTAAAGCGTTCTTTT+AGG + Chr7:67550610-67550629 None:intergenic 35.0%
!! AGTTTTGTCTGCTTGTGATA+TGG + Chr7:67548719-67548738 None:intergenic 35.0%
!! TTTGATCACGTTGGTTTACT+TGG - Chr7:67548476-67548495 MsG0780039686.01.T02:intron 35.0%
!!! GACACTCATTTTGAAATGGA+AGG + Chr7:67548791-67548810 None:intergenic 35.0%
AAAGTGGAAATCACACCTTG+AGG + Chr7:67550946-67550965 None:intergenic 40.0%
AAAGTGTGTAAATGCGCTGA+AGG - Chr7:67548672-67548691 MsG0780039686.01.T02:intron 40.0%
AACTTAGTGAGATCCACCTT+TGG + Chr7:67552245-67552264 None:intergenic 40.0%
AAGTGTGTAAATGCGCTGAA+GGG - Chr7:67548673-67548692 MsG0780039686.01.T02:intron 40.0%
AATCTACGCAATGTGTTCAG+AGG - Chr7:67549238-67549257 MsG0780039686.01.T02:intron 40.0%
ACAAGCAGACAAAACTGAGA+TGG - Chr7:67548723-67548742 MsG0780039686.01.T02:intron 40.0%
ATATAGTGTGTGTGGGTAAG+TGG - Chr7:67549091-67549110 MsG0780039686.01.T02:intron 40.0%
ATGGAGGTCCTTACTTAACA+AGG - Chr7:67551293-67551312 MsG0780039686.01.T02:intron 40.0%
CACGATGATATTTGTTCACC+CGG + Chr7:67548422-67548441 None:intergenic 40.0%
CTGAACACATTGCGTAGATT+GGG + Chr7:67549238-67549257 None:intergenic 40.0%
GAAAAATTGAGTCCCCGTTA+AGG - Chr7:67551350-67551369 MsG0780039686.01.T02:intron 40.0%
GAACACCATGAATACCAAGT+GGG - Chr7:67548589-67548608 MsG0780039686.01.T02:intron 40.0%
GAAGAAAGAAGGAAGAGAGA+AGG - Chr7:67551776-67551795 MsG0780039686.01.T02:intron 40.0%
GAAGTGGTCCTTGTTAAGTA+AGG + Chr7:67551304-67551323 None:intergenic 40.0%
GAGGAAAAGATCTTGTGCAA+AGG + Chr7:67552168-67552187 None:intergenic 40.0%
GATATCCCACTTGGTATTCA+TGG + Chr7:67548597-67548616 None:intergenic 40.0%
GATCTATCTCCTCGATACAT+AGG - Chr7:67548380-67548399 MsG0780039686.01.T02:intron 40.0%
GCAGACAACTTGACAATCAA+TGG - Chr7:67549204-67549223 MsG0780039686.01.T02:intron 40.0%
TAGTTGCATGTTCCTTAACG+GGG + Chr7:67551365-67551384 None:intergenic 40.0%
TATAGTGTGTGTGGGTAAGT+GGG - Chr7:67549092-67549111 MsG0780039686.01.T02:intron 40.0%
TCATCCACAAATCTGTTGGA+GGG - Chr7:67550012-67550031 MsG0780039686.01.T02:intron 40.0%
TCTGAACACATTGCGTAGAT+TGG + Chr7:67549239-67549258 None:intergenic 40.0%
TGAACACCATGAATACCAAG+TGG - Chr7:67548588-67548607 MsG0780039686.01.T02:intron 40.0%
TGATATTTGTTCACCCGGTT+CGG + Chr7:67548417-67548436 None:intergenic 40.0%
TGGGTCAGTCCATACTTAAT+TGG - Chr7:67547811-67547830 MsG0780039686.01.T02:intron 40.0%
TGTTAAGTAAGGACCTCCAT+TGG + Chr7:67551293-67551312 None:intergenic 40.0%
TTCATCCACAAATCTGTTGG+AGG - Chr7:67550011-67550030 MsG0780039686.01.T02:intron 40.0%
TTGGATCCTCCATTAGTAGA+CGG - Chr7:67547830-67547849 MsG0780039686.01.T02:intron 40.0%
! TCGTTTTCACCGTCTACTAA+TGG + Chr7:67547842-67547861 None:intergenic 40.0%
! TTTTAGCAATCCACACCTCA+AGG - Chr7:67550928-67550947 MsG0780039686.01.T02:intron 40.0%
! TTTTCACCGTCTACTAATGG+AGG + Chr7:67547839-67547858 None:intergenic 40.0%
!! ACTAATACCACTGTTGGCTT+GGG + Chr7:67548283-67548302 None:intergenic 40.0%
!! GCTGTTGGTCTTCAATTTGT+TGG - Chr7:67551152-67551171 MsG0780039686.01.T02:intron 40.0%
!! TTGTATTTTAGGCTGCAAGC+CGG + Chr7:67549126-67549145 None:intergenic 40.0%
!!! TGCAATCACTTTTTGCAAGC+TGG + Chr7:67547497-67547516 None:intergenic 40.0%
AATCACAGCATGCTGTTGTG+TGG + Chr7:67552063-67552082 None:intergenic 45.0%
ACAAGGACCACTTCCCATTA+AGG - Chr7:67551310-67551329 MsG0780039686.01.T02:intron 45.0%
AGCAGACAAAACTGAGATGG+TGG - Chr7:67548726-67548745 MsG0780039686.01.T02:intron 45.0%
ATAGTGTGTGTGGGTAAGTG+GGG - Chr7:67549093-67549112 MsG0780039686.01.T02:intron 45.0%
ATATAAGGACCCTCTCTCCT+GGG - Chr7:67551384-67551403 MsG0780039686.01.T02:intron 45.0%
ATATCAGCACAGTGACACTG+AGG + Chr7:67552112-67552131 None:intergenic 45.0%
ATCACTCGAGTGCTCTTCAA+TGG - Chr7:67547359-67547378 MsG0780039686.01.T02:CDS 45.0%
CACACCAATGGTTTGATGTG+TGG + Chr7:67548515-67548534 None:intergenic 45.0%
GAACCATGTAGCTACTCCAA+AGG - Chr7:67552226-67552245 MsG0780039686.01.T02:CDS 45.0%
GAAGGGTGAAACTGCATTGT+CGG - Chr7:67548690-67548709 MsG0780039686.01.T02:intron 45.0%
GATCGAAACGAGCATCAACA+TGG + Chr7:67551984-67552003 None:intergenic 45.0%
GTATGTGAGCGAGTGACAAT+AGG + Chr7:67549717-67549736 None:intergenic 45.0%
TATATAAGGACCCTCTCTCC+TGG - Chr7:67551383-67551402 MsG0780039686.01.T02:intron 45.0%
TCCAATGGAGGGTCCTTAAT+GGG + Chr7:67551326-67551345 None:intergenic 45.0%
TGCTCCACACATCAAACCAT+TGG - Chr7:67548508-67548527 MsG0780039686.01.T02:intron 45.0%
TGGTTCATAGCAGAAGTCAG+TGG + Chr7:67552212-67552231 None:intergenic 45.0%
TGGTTGCAGTGAAGCTCAAA+AGG + Chr7:67551964-67551983 None:intergenic 45.0%
! CACTAATACCACTGTTGGCT+TGG + Chr7:67548284-67548303 None:intergenic 45.0%
! CAGTGTCACTGTGCTGATAT+TGG - Chr7:67552112-67552131 MsG0780039686.01.T02:intron 45.0%
! CATCGTAACTAGCTTCACCA+TGG + Chr7:67552034-67552053 None:intergenic 45.0%
! GAGGAGTGTAAGAACATCGA+AGG - Chr7:67549272-67549291 MsG0780039686.01.T02:intron 45.0%
! TAACTAGCTTCACCATGGAG+AGG + Chr7:67552029-67552048 None:intergenic 45.0%
!! GAGGGATTGATTTTGTGCAG+AGG + Chr7:67552090-67552109 None:intergenic 45.0%
!! TGTAAGAGCATCTCCAATGG+AGG - Chr7:67551277-67551296 MsG0780039686.01.T02:intron 45.0%
AGGTCAAATTTGGGCCGAAC+CGG - Chr7:67548400-67548419 MsG0780039686.01.T02:intron 50.0%
CATCACTCAACTCCTCTCCA+TGG - Chr7:67552014-67552033 MsG0780039686.01.T02:intron 50.0%
CATTAAGGACCCTCCATTGG+AGG - Chr7:67551325-67551344 MsG0780039686.01.T02:intron 50.0%
CCATGTAGCTACTCCAAAGG+TGG - Chr7:67552229-67552248 MsG0780039686.01.T02:CDS 50.0%
CCTCTCTCCTGGGTAACTAA+CGG - Chr7:67551394-67551413 MsG0780039686.01.T02:intron 50.0%
CGTTAGTTACCCAGGAGAGA+GGG + Chr7:67551396-67551415 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+TGG + Chr7:67551327-67551346 None:intergenic 50.0%
CTGTTGGAGGGACCGAAATT+GGG - Chr7:67550024-67550043 MsG0780039686.01.T02:intron 50.0%
GGAAATCACACCTTGAGGTG+TGG + Chr7:67550941-67550960 None:intergenic 50.0%
GGAGAGGAGTTGAGTGATGA+AGG + Chr7:67552013-67552032 None:intergenic 50.0%
GTATCAGTGCAACGACACTG+TGG + Chr7:67552190-67552209 None:intergenic 50.0%
TAGTGTGTGTGGGTAAGTGG+GGG - Chr7:67549094-67549113 MsG0780039686.01.T02:intron 50.0%
TCCCATTAAGGACCCTCCAT+TGG - Chr7:67551322-67551341 MsG0780039686.01.T02:intron 50.0%
TCTACCATTGTGGATGCCGT+AGG - Chr7:67551719-67551738 MsG0780039686.01.T02:intron 50.0%
TCTGTTGGAGGGACCGAAAT+TGG - Chr7:67550023-67550042 MsG0780039686.01.T02:intron 50.0%
!! CCACCTTTGGAGTAGCTACA+TGG + Chr7:67552232-67552251 None:intergenic 50.0%
!! CTGAGATGGTGGACAAGTTC+AGG - Chr7:67548737-67548756 MsG0780039686.01.T02:intron 50.0%
AGTGTGTGTGGGTAAGTGGG+GGG - Chr7:67549095-67549114 MsG0780039686.01.T02:intron 55.0%
CAGCACAGTGACACTGAGGA+GGG + Chr7:67552108-67552127 None:intergenic 55.0%
CATGCCTACGGCATCCACAA+TGG + Chr7:67551726-67551745 None:intergenic 55.0%
CCGTTAGTTACCCAGGAGAG+AGG + Chr7:67551397-67551416 None:intergenic 55.0%
CGGTCCCTCCAACAGATTTG+TGG + Chr7:67550019-67550038 None:intergenic 55.0%
GCCACGAGGATCATGCATGT+AGG - Chr7:67550137-67550156 MsG0780039686.01.T02:intron 55.0%
GCCTACATGCATGATCCTCG+TGG + Chr7:67550141-67550160 None:intergenic 55.0%
GGAGGGTCCTTAATGGGAAG+TGG + Chr7:67551320-67551339 None:intergenic 55.0%
GGTCAAATTTGGGCCGAACC+GGG - Chr7:67548401-67548420 MsG0780039686.01.T02:intron 55.0%
TCAGCACAGTGACACTGAGG+AGG + Chr7:67552109-67552128 None:intergenic 55.0%
TCAGTGCAACGACACTGTGG+AGG + Chr7:67552187-67552206 None:intergenic 55.0%
CGTGGGACCGTTAGTTACCC+AGG + Chr7:67551404-67551423 None:intergenic 60.0%
GGCTTCTCCCAAGCCAACAG+TGG - Chr7:67548273-67548292 MsG0780039686.01.T02:intron 60.0%
GGGTAAGTGGGGGGTTACAC+CGG - Chr7:67549104-67549123 MsG0780039686.01.T02:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 67547257 67552298 67547257 ID=MsG0780039686.01;Name=MsG0780039686.01
Chr7 mRNA 67547294 67552298 67547294 ID=MsG0780039686.01.T01;Parent=MsG0780039686.01;Name=MsG0780039686.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|119
Chr7 exon 67547294 67547481 67547294 ID=MsG0780039686.01.T01:exon:11473;Parent=MsG0780039686.01.T01
Chr7 exon 67552127 67552298 67552127 ID=MsG0780039686.01.T01:exon:11472;Parent=MsG0780039686.01.T01
Chr7 CDS 67552127 67552298 67552127 ID=MsG0780039686.01.T01:cds;Parent=MsG0780039686.01.T01
Chr7 CDS 67547294 67547481 67547294 ID=MsG0780039686.01.T01:cds;Parent=MsG0780039686.01.T01
Chr7 mRNA 67547294 67552298 67547294 ID=MsG0780039686.01.T02;Parent=MsG0780039686.01;Name=MsG0780039686.01.T02;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|116
Chr7 exon 67547294 67547503 67547294 ID=MsG0780039686.01.T02:exon:11475;Parent=MsG0780039686.01.T02
Chr7 exon 67552158 67552298 67552158 ID=MsG0780039686.01.T02:exon:11474;Parent=MsG0780039686.01.T02
Chr7 CDS 67552158 67552298 67552158 ID=MsG0780039686.01.T02:cds;Parent=MsG0780039686.01.T02
Chr7 CDS 67547294 67547503 67547294 ID=MsG0780039686.01.T02:cds;Parent=MsG0780039686.01.T02
Chr7 mRNA 67547257 67552222 67547257 ID=MsG0780039686.01.T03;Parent=MsG0780039686.01;Name=MsG0780039686.01.T03;_AED=0.50;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|97
Chr7 exon 67547257 67547484 67547257 ID=MsG0780039686.01.T03:exon:11477;Parent=MsG0780039686.01.T03
Chr7 exon 67552157 67552222 67552157 ID=MsG0780039686.01.T03:exon:11476;Parent=MsG0780039686.01.T03
Chr7 CDS 67552157 67552222 67552157 ID=MsG0780039686.01.T03:cds;Parent=MsG0780039686.01.T03
Chr7 CDS 67547257 67547484 67547257 ID=MsG0780039686.01.T03:cds;Parent=MsG0780039686.01.T03
Chr7 mRNA 67547349 67547414 67547349 ID=MsG0780039686.01.T04;Parent=MsG0780039686.01;Name=MsG0780039686.01.T04;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|21
Chr7 exon 67547349 67547414 67547349 ID=MsG0780039686.01.T04:exon:11478;Parent=MsG0780039686.01.T04
Chr7 CDS 67547349 67547414 67547349 ID=MsG0780039686.01.T04:cds;Parent=MsG0780039686.01.T04
Gene Sequence

>MsG0780039686.01.T04

ATGTCACTCAGCTTGCAAAAGATGCCTTTGCACAAGATCTTTTCCTCCACAGTGTCGTTGCACTGA

>MsG0780039686.01.T03

ATGTTCGTTTTGATTCAACATCATTCATCACTCGAGTGCTCTTCAATGGTGAAGCTACTTATGATGCATGCTGTGATTTATGCCTCTGCACAAAATCAATCCCTCCTCAGTGTCACTGTGCTGATATTGGAGAAAAATGTCACTCAGCTTGCAAAAGATGCCTTTGCACAAGATCTTTTCCTCCACAGTGTCGTTGCACTGATACCACTGACTTCTGCTATGAACCATGTAGCTACTCCAAAGGTGGATCTCACTAAGTTTGAGTATAACTATGTACCTACCATATGCATGTGA

>MsG0780039686.01.T02

ATGGAGTCGAACAAGAATACATTTGTGAAGTTATCTCTGTTGCTTTTGCTCTTATGCTTCACCGCAACTATTGTTGATGTTCGTTTTGATTCAACATCATTCATCACTCGAGTGCTCTTCAATGGTGAAGCTACTTATGATTGTCAAATCCACACAACAGCATGCTGTGATTTATGCCTCTGCACAAAATCAATCCCTCCTCAGTGTCACTGTGCTGATATTGGAGAAAAATGTCACTCAGCTTGCAAAAGATGCCTTTGCACAAGATCTTTTCCTCCACAGTGTCGTTGCACTGATACCACTGACTTCTGCTATGAACCATGTAGCTACTCCAAAGGTGGATCTCACTAA

>MsG0780039686.01.T01

ATGGAGTCGAACAAGAATACATTTGTGAAGTTATCTCTGTTGCTTTTGCTCTTATGCTTCACCGCAACTATTGTTGATGTTCGTTTTGATTCAACATCATTCATCACTCGAGTGCTCTTCAATGGTGAAGCTACTTATGATGTTATTTATCATTCAGCATGCTGTGATGAATGCTGTGATTTATGCCTCTGCACAAAATCAATCCCTCCTCAGTGTCACTGTGCTGATATTGGAGAAAAATGTCACTCAGCTTGCAAAAGATGCCTTTGCACAAGATCTTTTCCTCCACAGTGTCGTTGCACTGATACCACTGACTTCTGCTATGAACCATGTAGCTACTCCAAAGGTGGATCTCACTAA

Protein sequence

>MsG0780039686.01.T04

MSLSLQKMPLHKIFSSTVSLH*

>MsG0780039686.01.T03

MFVLIQHHSSLECSSMVKLLMMHAVIYASAQNQSLLSVTVLILEKNVTQLAKDAFAQDLFLHSVVALIPLTSAMNHVATPKVDLTKFEYNYVPTICM*

>MsG0780039686.01.T02

MESNKNTFVKLSLLLLLLCFTATIVDVRFDSTSFITRVLFNGEATYDCQIHTTACCDLCLCTKSIPPQCHCADIGEKCHSACKRCLCTRSFPPQCRCTDTTDFCYEPCSYSKGGSH*

>MsG0780039686.01.T01

MESNKNTFVKLSLLLLLLCFTATIVDVRFDSTSFITRVLFNGEATYDVIYHSACCDECCDLCLCTKSIPPQCHCADIGEKCHSACKRCLCTRSFPPQCRCTDTTDFCYEPCSYSKGGSH*