AlfalfaGEDB | MsG0580024717.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024717.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024717.01.T01	XP_003611545.1	92.771	415	27	2	1	414	1	413	0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024717.01.T01	Q9SY57	46.135	414	194	6	3	405	4	399	1.10E-120	359

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024717.01.T01	G7K2F2	92.771	415	27	2	1	414	1	413	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0580024717.01	0.816819	4.543958e-52	3.253470e-49
MsG0080047884.01	MsG0580024717.01	0.832403	9.643931e-56	1.076834e-52
MsG0080048016.01	MsG0580024717.01	0.814655	1.379198e-51	9.308651e-49
MsG0080048505.01	MsG0580024717.01	0.832705	8.116102e-56	9.144235e-53
MsG0080048660.01	MsG0580024717.01	0.806589	7.643418e-50	4.164601e-47
MsG0080048727.01	MsG0580024717.01	0.844384	7.817221e-59	1.259775e-55
MsG0080048748.01	MsG0580024717.01	0.827644	1.396467e-54	1.356110e-51
MsG0080048773.01	MsG0580024717.01	0.826301	2.925177e-54	2.732519e-51
MsG0080048780.01	MsG0580024717.01	0.830978	2.165984e-55	2.318623e-52
MsG0080048801.01	MsG0580024717.01	0.827268	1.718476e-54	1.650900e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024717.01.T01	MTR_5g015150	92.771	415	27	2	1	414	1	413	0.0	754
MsG0580024717.01.T01	MTR_3g103320	44.262	427	195	8	1	414	1	397	3.83e-118	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024717.01.T01	AT1G10150	46.135	414	194	6	3	405	4	399	1.12e-121	359
MsG0580024717.01.T01	AT1G59510	42.714	398	178	9	14	406	15	367	8.33e-107	320
MsG0580024717.01.T01	AT3G49790	41.584	404	185	5	10	413	12	364	3.81e-98	298

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Find 73 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGATGTTTGTGATAAAG+AGG	0.428216	5:-8749088	MsG0580024717.01.T01:CDS
AATGGATTGCAATTGGGCTT+TGG	0.425168	5:-8748812	MsG0580024717.01.T01:CDS
AATTGCAATCCATTATGTGC+AGG	0.556385	5:+8748821	None:intergenic
AATTGCGAAATTATCGCGCT+CGG	0.597238	5:-8749742	MsG0580024717.01.T01:CDS
ACCTTAATCTTAGTTTCAAT+CGG	0.367438	5:-8749966	MsG0580024717.01.T01:CDS
AGAACAAGTCTCCTATTACT+AGG	0.493344	5:+8749021	None:intergenic
AGAATCGGGTTGTTCTGATT+TGG	0.353612	5:-8749463	MsG0580024717.01.T01:CDS
AGACTTGTTCTTGATGTGAC+TGG	0.473332	5:-8749009	MsG0580024717.01.T01:CDS
ATAAAGAGGATAAAGGTGGT+TGG	0.557867	5:-8749074	MsG0580024717.01.T01:CDS
ATAAGTGTGGTGAGCTGATT+GGG	0.457299	5:-8749401	MsG0580024717.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATGTTTGTGATAAAG+AGG	-	Chr5:8749736-8749755	MsG0580024717.01.T01:CDS	30.0%
ATGTCCGTAAAAGAAAGAAA+TGG	-	Chr5:8748835-8748854	MsG0580024717.01.T01:CDS	30.0%
CCTTAATCTTAGTTTCAATC+GGG	-	Chr5:8748859-8748878	MsG0580024717.01.T01:CDS	30.0%
GTTTGTGATAAAGAGGATAA+AGG	-	Chr5:8749743-8749762	MsG0580024717.01.T01:CDS	30.0%
TTGCTAGGAATATTGTTCTT+GGG	-	Chr5:8749285-8749304	MsG0580024717.01.T01:CDS	30.0%
TTTGCTAGGAATATTGTTCT+TGG	-	Chr5:8749284-8749303	MsG0580024717.01.T01:CDS	30.0%
AATTGCAATCCATTATGTGC+AGG	+	Chr5:8750006-8750025	None:intergenic	35.0%
AGAACAAGTCTCCTATTACT+AGG	+	Chr5:8749806-8749825	None:intergenic	35.0%
ATAAAGAGGATAAAGGTGGT+TGG	-	Chr5:8749750-8749769	MsG0580024717.01.T01:CDS	35.0%
ATTACTAGGAATAGCCAATG+TGG	+	Chr5:8749792-8749811	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	8748801	8750045	8748801	ID=MsG0580024717.01;Name=MsG0580024717.01
Chr5	mRNA	8748801	8750045	8748801	ID=MsG0580024717.01.T01;Parent=MsG0580024717.01;Name=MsG0580024717.01.T01;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|414
Chr5	exon	8748801	8750045	8748801	ID=MsG0580024717.01.T01:exon:26392;Parent=MsG0580024717.01.T01
Chr5	CDS	8748801	8750045	8748801	ID=MsG0580024717.01.T01:cds;Parent=MsG0580024717.01.T01

Gene Sequence

>MsG0580024717.01.T01

ATGGAACTGCAATTAGTTGAAAACGCTTTCGATTATGTCCGTAAAAGAAAGAAATGGACCTTAATCTTAGTTTCAATCGGGTTTAGCAGTTACGTTAGTTACCGTGCTTATCACGCACCATTCATAGCTCGAAAGAGAGAGAAAATTTCAAAGCTTCTGTGTTCTTTAGTTTCTGTAGCAGAAGCTGTTTCAGAATCTGCAGACACCATCGGTATTGTCACAAAAGATGTCAAGAATTTTTTGCAATCTGATTCTGATCAAGTTCCTAATAGTTTGAATCAAATTGCGAAATTATCGCGCTCGGAACAGTTTTCGGATTCTTTGGTTAGTGTGACACGTGCTGTGACTGTTGGAATTGTGAATGGTTATCAATCCATGAGCCAGGCTGATGAAAATCAATCCGATTCAAATGTTGCTGACAAGGTGTTTGATAAATTGTTTACACCGGCTGGTTCGGGATTTGCTTCTGTTGTTGTTGGAAGTTTTGCTAGGAATATTGTTCTTGGGTTTTATTCAGATGCTGGTGGTAAATGCAGTGGAGGGTTGGATTCGAGAAGTGGAGAATCGGGTTGTTCTGATTTGGATTCTGGTGTGCCGAAATGGGTTGATGTTGTTTGTAGTGATAAGTGTGGTGAGCTGATTGGGAATTTTGTTCAATTGTTTGTTAGTACATTGGTTGCAGTTTATCTTGATAAGACAATGCATATCAATACTTATGATGAATTCTTTTCTGGATTAACTAACCCGAAACATGAGACTAGGGTTAGAGAAATGTTGGTTGATGTTTGTAATGGCGCTATAGAGAGTCTTGTTAAAACGTCTCATGAGGTGTTTAATAGCTCTAACCCGAATGATAGTTCAGGTTCAGGTTCAGGTTCTTATTTTGATGCTGGAGAAACTCTAAGTTCTGTAGAGACATCGTGTATTGAATCAGAAAGAGATGTTTGTGATAAAGAGGATAAAGGTGGTTGGGTCAGCAAGGTTTCATCCACATTGGCTATTCCTAGTAATAGGAGACTTGTTCTTGATGTGACTGGGAGGGTCACATTTGAGACAGTTAGATCTTTCATGGAGTTTATTTTGCAAACGTTGTGTGGTTCTGTGAGAAGATGTGCTCACAATGTTCACGAGGAAGTGGTTGAGATTATGAGATATGCTGCAGCTAAATTCTCTGTTATTGTTGCAATATGTCTCGCGTTGTGCCTGCACATAATGGATTGCAATTGGGCTTTGGTGCCTGCTTAA

Protein sequence

>MsG0580024717.01.T01

MELQLVENAFDYVRKRKKWTLILVSIGFSSYVSYRAYHAPFIARKREKISKLLCSLVSVAEAVSESADTIGIVTKDVKNFLQSDSDQVPNSLNQIAKLSRSEQFSDSLVSVTRAVTVGIVNGYQSMSQADENQSDSNVADKVFDKLFTPAGSGFASVVVGSFARNIVLGFYSDAGGKCSGGLDSRSGESGCSDLDSGVPKWVDVVCSDKCGELIGNFVQLFVSTLVAVYLDKTMHINTYDEFFSGLTNPKHETRVREMLVDVCNGAIESLVKTSHEVFNSSNPNDSSGSGSGSYFDAGETLSSVETSCIESERDVCDKEDKGGWVSKVSSTLAIPSNRRLVLDVTGRVTFETVRSFMEFILQTLCGSVRRCAHNVHEEVVEIMRYAAAKFSVIVAICLALCLHIMDCNWALVPA*