AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043459.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043459.01.T01 MTR_8g036060 99.026 308 2 1 1 307 1 308 0.0 610
MsG0880043459.01.T01 MTR_5g091630 54.104 268 98 4 35 300 2 246 8.17e-78 238
MsG0880043459.01.T01 MTR_5g011520 88.462 156 18 0 84 239 98 253 2.09e-77 239
MsG0880043459.01.T01 MTR_7g080980 59.615 208 74 3 95 302 66 263 2.71e-68 214
MsG0880043459.01.T01 MTR_3g068035 55.455 220 78 4 96 300 89 303 1.45e-67 213
MsG0880043459.01.T01 MTR_4g098450 52.518 278 114 3 34 307 33 296 1.63e-67 213
MsG0880043459.01.T01 MTR_1g079810 56.485 239 80 4 86 307 74 305 1.93e-67 213
MsG0880043459.01.T01 MTR_1g044155 76.623 154 35 1 83 235 122 275 4.85e-67 214
MsG0880043459.01.T01 MTR_1g073860 76.667 150 35 0 86 235 94 243 3.37e-66 210
MsG0880043459.01.T01 MTR_3g100470 40.523 306 144 9 6 306 15 287 6.51e-60 193
MsG0880043459.01.T01 MTR_5g080580 65.000 140 49 0 96 235 99 238 1.00e-52 176
MsG0880043459.01.T01 MTR_5g066020 40.000 275 132 5 38 307 6 252 3.95e-47 159
MsG0880043459.01.T01 MTR_5g089600 38.255 149 81 2 86 223 77 225 2.75e-30 114
MsG0880043459.01.T01 MTR_4g057487 32.547 212 121 5 86 275 17 228 3.13e-24 99.0
MsG0880043459.01.T01 MTR_5g010330 38.854 157 89 3 75 225 93 248 3.34e-24 100
MsG0880043459.01.T01 MTR_5g089700 33.548 155 94 1 85 230 74 228 1.33e-23 97.1
MsG0880043459.01.T01 MTR_4g057525 31.731 208 114 5 86 275 36 233 6.61e-23 95.5
MsG0880043459.01.T01 MTR_1g079780 39.496 119 71 1 108 225 104 222 4.26e-22 94.7
MsG0880043459.01.T01 MTR_1g032910 36.420 162 87 5 86 233 101 260 8.99e-22 93.6
MsG0880043459.01.T01 MTR_1g053685 32.704 159 98 2 86 235 85 243 2.14e-21 92.0
MsG0880043459.01.T01 MTR_1g061530 41.600 125 69 2 116 236 144 268 9.10e-21 91.7
MsG0880043459.01.T01 MTR_6g061670 40.517 116 66 2 113 225 130 245 4.11e-19 86.3
MsG0880043459.01.T01 MTR_6g061670 40.517 116 66 2 113 225 125 240 5.41e-19 85.9
MsG0880043459.01.T01 MTR_5g089090 35.811 148 89 1 86 227 28 175 8.48e-19 83.2
MsG0880043459.01.T01 MTR_8g098390 40.323 124 70 3 105 225 158 280 2.32e-18 84.7
MsG0880043459.01.T01 MTR_1g076710 43.966 116 61 2 113 225 134 248 4.30e-18 83.6
MsG0880043459.01.T01 MTR_4g098460 37.838 148 75 4 86 225 57 195 9.38e-18 82.0
MsG0880043459.01.T01 MTR_1g073870 42.857 154 40 5 83 235 48 154 1.49e-17 80.1
MsG0880043459.01.T01 MTR_7g116320 38.938 113 69 0 113 225 143 255 2.92e-17 81.6
MsG0880043459.01.T01 MTR_7g077120 36.301 146 87 2 86 225 127 272 4.21e-17 80.9
MsG0880043459.01.T01 MTR_8g036160 44.737 114 59 1 116 225 145 258 4.26e-17 81.3
MsG0880043459.01.T01 MTR_7g074935 46.903 113 57 1 116 225 130 242 5.58e-17 80.5
MsG0880043459.01.T01 MTR_7g116320 38.400 125 73 1 113 233 143 267 2.51e-16 77.8
MsG0880043459.01.T01 MTR_4g069110 41.053 95 56 0 86 180 34 128 2.59e-16 75.9
MsG0880043459.01.T01 MTR_4g098460 36.842 152 76 4 86 225 57 200 5.80e-16 77.0
MsG0880043459.01.T01 MTR_8g031100 32.512 203 126 3 83 274 122 324 7.56e-16 77.4
MsG0880043459.01.T01 MTR_8g078930 36.508 126 70 3 117 233 5 129 5.99e-15 71.6
MsG0880043459.01.T01 MTR_4g055813 34.091 132 85 2 112 241 18 149 1.06e-14 73.2
MsG0880043459.01.T01 MTR_5g011680 33.871 124 75 2 116 232 145 268 1.27e-14 73.2
MsG0880043459.01.T01 MTR_4g101990 50.746 67 33 0 116 182 147 213 4.03e-14 72.0
MsG0880043459.01.T01 MTR_5g011610 34.307 137 84 4 110 243 53 186 9.11e-14 71.2
MsG0880043459.01.T01 MTR_5g011620 35.780 109 68 1 117 225 119 225 1.34e-13 71.6
MsG0880043459.01.T01 MTR_4g055803 38.983 118 62 3 116 225 128 243 2.64e-13 70.5
MsG0880043459.01.T01 MTR_1g071850 34.965 143 65 3 93 235 37 151 3.01e-13 67.8
MsG0880043459.01.T01 MTR_4g055833 32.857 140 88 2 112 245 121 260 9.44e-13 68.2
MsG0880043459.01.T01 MTR_6g060670 35.455 110 69 2 116 225 180 287 7.45e-12 65.5
MsG0880043459.01.T01 MTR_3g116100 26.180 233 125 8 85 278 92 316 2.19e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043459.01.T01 AT2G45430 64.815 324 90 10 1 307 1 317 2.82e-91 274
MsG0880043459.01.T01 AT3G60870 54.870 308 95 10 1 307 1 265 7.93e-87 261
MsG0880043459.01.T01 AT4G22810 58.025 324 98 10 10 307 13 324 4.45e-80 246
MsG0880043459.01.T01 AT2G42940 58.036 224 73 3 82 304 49 252 6.74e-75 230
MsG0880043459.01.T01 AT4G12050 58.419 291 96 7 34 307 57 339 3.86e-74 231
MsG0880043459.01.T01 AT2G35270 72.078 154 43 0 86 239 78 231 2.75e-71 222
MsG0880043459.01.T01 AT1G76500 68.485 165 43 1 82 237 68 232 6.13e-67 211
MsG0880043459.01.T01 AT4G14465 68.590 156 49 0 84 239 65 220 4.16e-64 204
MsG0880043459.01.T01 AT4G17800 57.009 214 79 2 95 307 91 292 5.17e-64 204
MsG0880043459.01.T01 AT3G04570 71.519 158 37 1 86 235 80 237 2.25e-62 200
MsG0880043459.01.T01 AT5G49700 51.829 164 72 2 83 239 53 216 9.16e-56 182
MsG0880043459.01.T01 AT4G35390 73.333 150 38 1 86 233 63 212 4.18e-55 181
MsG0880043459.01.T01 AT1G20900 69.375 160 40 1 85 235 85 244 3.84e-52 174
MsG0880043459.01.T01 AT3G55560 54.425 226 78 6 12 235 36 238 4.62e-51 171
MsG0880043459.01.T01 AT1G14490 43.216 199 104 3 87 278 6 202 4.88e-42 144
MsG0880043459.01.T01 AT1G14490 43.216 199 104 3 87 278 25 221 8.25e-42 144
MsG0880043459.01.T01 AT2G33620 40.113 177 94 4 80 253 131 298 6.95e-24 100
MsG0880043459.01.T01 AT2G33620 40.113 177 94 4 80 253 131 298 6.95e-24 100
MsG0880043459.01.T01 AT2G33620 40.113 177 94 4 80 253 131 298 6.95e-24 100
MsG0880043459.01.T01 AT2G33620 40.113 177 94 4 80 253 131 298 6.95e-24 100
MsG0880043459.01.T01 AT1G63470 41.096 146 79 3 86 225 147 291 2.65e-23 99.0
MsG0880043459.01.T01 AT4G17950 37.696 191 104 4 86 263 196 384 2.21e-22 97.1
MsG0880043459.01.T01 AT5G51590 42.478 113 62 1 116 225 181 293 5.02e-22 95.9
MsG0880043459.01.T01 AT5G62260 39.516 124 72 1 113 233 160 283 7.98e-22 93.6
MsG0880043459.01.T01 AT4G12080 42.478 113 62 1 116 225 173 285 1.13e-21 94.0
MsG0880043459.01.T01 AT4G25320 42.478 113 62 1 116 225 169 281 1.26e-21 94.7
MsG0880043459.01.T01 AT5G62260 42.241 116 64 1 113 225 160 275 1.38e-21 94.4
MsG0880043459.01.T01 AT5G62260 42.241 116 64 1 113 225 160 275 1.38e-21 94.4
MsG0880043459.01.T01 AT3G04590 37.273 110 69 0 116 225 174 283 7.55e-21 92.4
MsG0880043459.01.T01 AT3G04590 37.273 110 69 0 116 225 174 283 1.45e-20 90.5
MsG0880043459.01.T01 AT2G45850 37.427 171 89 5 86 244 132 296 1.72e-20 90.5
MsG0880043459.01.T01 AT2G45850 37.427 171 89 5 86 244 132 296 1.72e-20 90.5
MsG0880043459.01.T01 AT2G45850 38.158 152 76 5 86 225 132 277 6.34e-19 85.1
MsG0880043459.01.T01 AT4G00200 45.133 113 59 1 116 225 126 238 2.44e-16 78.6
MsG0880043459.01.T01 AT4G00200 45.133 113 59 1 116 225 126 238 2.44e-16 78.6
MsG0880043459.01.T01 AT3G61310 31.111 225 129 5 86 304 134 338 1.28e-15 76.6
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 130 274 1.62e-15 76.6
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 130 274 1.62e-15 76.6
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 124 268 1.83e-15 76.3
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 124 268 1.83e-15 76.3
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 124 268 1.83e-15 76.3
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 124 268 1.83e-15 76.3
MsG0880043459.01.T01 AT1G63480 34.247 146 89 3 86 225 124 268 1.83e-15 76.3
MsG0880043459.01.T01 AT5G46640 44.792 96 51 1 86 181 155 248 9.65e-15 74.3
MsG0880043459.01.T01 AT4G22770 39.823 113 65 1 116 225 153 265 3.58e-14 72.4
MsG0880043459.01.T01 AT4G22770 39.823 113 65 1 116 225 153 265 3.58e-14 72.4

Find 115 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTACCAGCTGAGGGTTAT+TGG 0.236815 8:-25108982 MsG0880043459.01.T01:CDS
CTACAAGTTGTTGCTGTTGC+TGG 0.255008 8:+25109065 None:intergenic
ATTACCAGCTGAGGGTTATT+GGG 0.283232 8:-25108981 MsG0880043459.01.T01:CDS
AATAACCCTCAGCTGGTAAT+TGG 0.299906 8:+25108984 None:intergenic
GTGCCAGGAAATGGAGGGTT+AGG 0.321400 8:-25109127 MsG0880043459.01.T01:CDS
GACCCTAACCCTCCATTTCC+TGG 0.349826 8:+25109124 None:intergenic
CCATTTCCTGGCACATTCAC+TGG 0.353925 8:+25109136 None:intergenic
GTGGGACCGTTGTTGGCTTC+CGG 0.360811 8:-25109232 MsG0880043459.01.T01:CDS
GAGCGTGGTGGGACCGTTGT+TGG 0.376140 8:-25109239 MsG0880043459.01.T01:CDS
TGTTGACTTCCCATGGTTCC+CGG 0.379448 8:+25109100 None:intergenic
CCAGTGAATGTGCCAGGAAA+TGG 0.383912 8:-25109136 MsG0880043459.01.T01:CDS
TTCGAGATACTATCCTTATC+TGG 0.384098 8:-25109346 MsG0880043459.01.T01:CDS
GTTGTTCCTCTTCGTTGGTT+TGG 0.386217 8:+25109764 None:intergenic
AAATGGAGGGTTAGGGTCAC+CGG 0.387872 8:-25109119 MsG0880043459.01.T01:CDS
TTCCGGACCGGTTGTTATCA+TGG 0.389245 8:-25109215 MsG0880043459.01.T01:CDS
CTGGTGGAGCAGGCGGCGGC+AGG 0.390554 8:+25109317 None:intergenic
GTTATCATGGCAGCTTCCTT+TGG 0.391274 8:-25109202 MsG0880043459.01.T01:CDS
GAACCTGCTGGTCTTCCTCT+TGG 0.392781 8:+25109595 None:intergenic
GTCTGCATCCTTAGCGGAAG+TGG 0.397268 8:-25109436 MsG0880043459.01.T01:CDS
CTGCTGTTGTTGACTTCCCA+TGG 0.408503 8:+25109093 None:intergenic
GGTGGTTGGTGTGAAATTGA+TGG 0.411727 8:+25109785 None:intergenic
CCTGCTCCACCAGCGGCGTC+AGG 0.417474 8:-25109307 MsG0880043459.01.T01:CDS
CTCTTCGTTGGTTTGGTGGT+TGG 0.418891 8:+25109771 None:intergenic
TGGAAAAGTGATGTAGCATT+AGG 0.427339 8:+25109037 None:intergenic
CCTGACGCCGCTGGTGGAGC+AGG 0.427453 8:+25109307 None:intergenic
TTGTCCACCAGCTAGATATA+TGG 0.434432 8:+25109279 None:intergenic
GGAGGAAGTGGTGGTGAGAT+GGG 0.435031 8:-25109625 MsG0880043459.01.T01:CDS
GGTGTTTCTTCATCTTCTAA+AGG 0.435106 8:+25109157 None:intergenic
ACCGTTGTTGGCTTCCGGAC+CGG 0.435941 8:-25109227 MsG0880043459.01.T01:CDS
GCCGCTGGTGGAGCAGGCGG+CGG 0.437684 8:+25109313 None:intergenic
CTGTCCCTCGTGATGATGAT+AGG 0.450585 8:+25109553 None:intergenic
CTCCGTCAACCAGCATCGCC+TGG 0.453764 8:-25109394 MsG0880043459.01.T01:CDS
TGGAGGAAGTGGTGGTGAGA+TGG 0.454468 8:-25109626 MsG0880043459.01.T01:CDS
ACTTTGTTGTTCCTCTTCGT+TGG 0.455028 8:+25109759 None:intergenic
TGAAGGTCTCTAGTGAGAAA+TGG 0.456542 8:+25109820 None:intergenic
GTGAGAAATGGAGGCGGAAG+AGG 0.460334 8:+25109832 None:intergenic
GGAAAAGATGACGGCGGTAG+CGG 0.464100 8:-25109658 MsG0880043459.01.T01:CDS
GACGGCGGTAGCGGAAGTGC+TGG 0.483545 8:-25109649 MsG0880043459.01.T01:CDS
GTGATGATGATAGGTGGCTT+TGG 0.489167 8:+25109562 None:intergenic
GTCGTCGGTGGGAGCGTGGT+GGG 0.489586 8:-25109250 MsG0880043459.01.T01:CDS
AACACTCCCACCGGAGGAGA+AGG 0.494922 8:-25109679 MsG0880043459.01.T01:CDS
GGAAGTGCTGGTGGAGGAAG+TGG 0.507816 8:-25109637 MsG0880043459.01.T01:CDS
GTTCCTCTTCGTTGGTTTGG+TGG 0.510018 8:+25109767 None:intergenic
TGCCATGATAACAACCGGTC+CGG 0.511741 8:+25109213 None:intergenic
GAAGCTGCCATGATAACAAC+CGG 0.512466 8:+25109208 None:intergenic
GTTAGGGTCACCGGGAACCA+TGG 0.515128 8:-25109110 MsG0880043459.01.T01:CDS
CAACTTCCATCACGTGGGAT+CGG 0.516425 8:+25109518 None:intergenic
CGTGGTGTCTGCATCCTTAG+CGG 0.517651 8:-25109442 MsG0880043459.01.T01:CDS
CACCAGGCGATGCTGGTTGA+CGG 0.520951 8:+25109392 None:intergenic
ACTACCGCACCAGGCGATGC+TGG 0.521135 8:+25109385 None:intergenic
AGACCAAGAGGAAGACCAGC+AGG 0.525862 8:-25109598 MsG0880043459.01.T01:CDS
ACAGGTCGTCGGTGGGAGCG+TGG 0.529478 8:-25109254 MsG0880043459.01.T01:CDS
TTGGAAATGCTGCTTATGAA+AGG 0.529919 8:-25109183 MsG0880043459.01.T01:CDS
GACGGCAACAACACTCCCAC+CGG 0.530783 8:-25109688 MsG0880043459.01.T01:CDS
TTAGGGTCACCGGGAACCAT+GGG 0.531803 8:-25109109 MsG0880043459.01.T01:CDS
GAAACACCAGTGAATGTGCC+AGG 0.532629 8:-25109142 MsG0880043459.01.T01:CDS
CACGTGATGGAAGTTGCAAA+TGG 0.532739 8:-25109511 MsG0880043459.01.T01:CDS
TTCATGCCAATTACCAGCTG+AGG 0.532750 8:-25108990 MsG0880043459.01.T01:CDS
TCTAGCTGGTGGACAAGGAC+AGG 0.533824 8:-25109272 MsG0880043459.01.T01:CDS
TGACGGTCCCACTTCCGCTA+AGG 0.536192 8:+25109428 None:intergenic
GCTAATCCTGACGCCGCTGG+TGG 0.537711 8:+25109301 None:intergenic
GGTGCGGTAGTCACACTTCA+CGG 0.538196 8:-25109373 MsG0880043459.01.T01:CDS
GGACAAGGACAGGTCGTCGG+TGG 0.538200 8:-25109262 MsG0880043459.01.T01:CDS
GGCGGTAGCGGAAGTGCTGG+TGG 0.543536 8:-25109646 MsG0880043459.01.T01:CDS
CCACCCCAATAACCCTCAGC+TGG 0.544497 8:+25108977 None:intergenic
TGCCAGGAAATGGAGGGTTA+GGG 0.548211 8:-25109126 MsG0880043459.01.T01:CDS
CGGCAGGAAAGAGCCAGATA+AGG 0.551698 8:+25109333 None:intergenic
ATATATCTAGCTGGTGGACA+AGG 0.552899 8:-25109277 MsG0880043459.01.T01:CDS
TGAAGTGTGACTACCGCACC+AGG 0.554425 8:+25109376 None:intergenic
TGCAAATGGATGTGACATCA+TGG 0.561346 8:-25109497 MsG0880043459.01.T01:CDS
GGATTAGCCATATATCTAGC+TGG 0.562049 8:-25109286 MsG0880043459.01.T01:CDS
GGTCGTCGGTGGGAGCGTGG+TGG 0.562103 8:-25109251 MsG0880043459.01.T01:CDS
GTGAATGTGCCAGGAAATGG+AGG 0.571584 8:-25109133 MsG0880043459.01.T01:CDS
CCAGCTGAGGGTTATTGGGG+TGG 0.572923 8:-25108977 MsG0880043459.01.T01:CDS
CGAGAACGAAACAACGAAGA+CGG 0.574284 8:-25109706 MsG0880043459.01.T01:CDS
TTACCAGCTGAGGGTTATTG+GGG 0.574478 8:-25108980 MsG0880043459.01.T01:CDS
CATTTGCAACTTCCATCACG+TGG 0.576032 8:+25109512 None:intergenic
CAACCACCAAACCAACGAAG+AGG 0.578019 8:-25109770 MsG0880043459.01.T01:CDS
GACGCCGCTGGTGGAGCAGG+CGG 0.578168 8:+25109310 None:intergenic
ATGGCTAATCCTGACGCCGC+TGG 0.580569 8:+25109298 None:intergenic
CGCACTCCGATCCCACGTGA+TGG 0.581464 8:-25109524 MsG0880043459.01.T01:CDS
TGACGGTCTTTGCGCGAAGG+AGG 0.585381 8:-25109468 MsG0880043459.01.T01:CDS
TCAACCAGCATCGCCTGGTG+CGG 0.586124 8:-25109389 MsG0880043459.01.T01:CDS
AATGGAGGGTTAGGGTCACC+GGG 0.588273 8:-25109118 MsG0880043459.01.T01:CDS
GACAAGGACAGGTCGTCGGT+GGG 0.588517 8:-25109261 MsG0880043459.01.T01:CDS
GTGTGACGGTCTTTGCGCGA+AGG 0.589217 8:-25109471 MsG0880043459.01.T01:CDS
GAGGAACAACAAAGTGGCAA+TGG 0.592421 8:-25109751 MsG0880043459.01.T01:CDS
GCCGCCGCCTGCTCCACCAG+CGG 0.593837 8:-25109314 MsG0880043459.01.T01:CDS
GGTAGCGGAAGTGCTGGTGG+AGG 0.596453 8:-25109643 MsG0880043459.01.T01:CDS
TTCATAAGCAGCATTTCCAA+AGG 0.598798 8:+25109186 None:intergenic
TCATGCCAATTACCAGCTGA+GGG 0.610376 8:-25108989 MsG0880043459.01.T01:CDS
GGCAACAACACTCCCACCGG+AGG 0.610978 8:-25109685 MsG0880043459.01.T01:CDS
TCTGCATCCTTAGCGGAAGT+GGG 0.612016 8:-25109435 MsG0880043459.01.T01:CDS
ACGGAGAGTCACGTTTGTGA+CGG 0.630141 8:+25109411 None:intergenic
GGTGGACAAGGACAGGTCGT+CGG 0.631663 8:-25109265 MsG0880043459.01.T01:CDS
GGCAATGGTAACTTAAGCCG+AGG 0.631690 8:-25109736 MsG0880043459.01.T01:CDS
GAGATGGGAAGAAGACCAAG+AGG 0.634395 8:-25109610 MsG0880043459.01.T01:CDS
TTAGCCATATATCTAGCTGG+TGG 0.635384 8:-25109283 MsG0880043459.01.T01:CDS
GATGGTGAGGATGAAGATGA+AGG 0.638930 8:+25109803 None:intergenic
AGTGCTGGTGGAGGAAGTGG+TGG 0.643608 8:-25109634 MsG0880043459.01.T01:CDS
GGAGGAGAAGGAAAAGATGA+CGG 0.644182 8:-25109667 MsG0880043459.01.T01:CDS
TTGGTGTGAAATTGATGGTG+AGG 0.647165 8:+25109790 None:intergenic
AACGAAGAGGAACAACAAAG+TGG 0.649911 8:-25109757 MsG0880043459.01.T01:CDS
ACCGGTCCGGAAGCCAACAA+CGG 0.661651 8:+25109226 None:intergenic
ATCATGGATCAAGTAGCTCA+AGG 0.665760 8:-25109859 MsG0880043459.01.T01:CDS
TCCCTCGTGATGATGATAGG+TGG 0.666765 8:+25109556 None:intergenic
AGGTCTCTAGTGAGAAATGG+AGG 0.671238 8:+25109823 None:intergenic
TCTCTAGTGAGAAATGGAGG+CGG 0.676073 8:+25109826 None:intergenic
ATTTGCAACTTCCATCACGT+GGG 0.680861 8:+25109513 None:intergenic
AGCCACCTATCATCATCACG+AGG 0.696192 8:-25109558 MsG0880043459.01.T01:CDS
TTTGCGCGAAGGAGGCAGCG+TGG 0.709250 8:-25109460 MsG0880043459.01.T01:CDS
GCCACCTATCATCATCACGA+GGG 0.714818 8:-25109557 MsG0880043459.01.T01:CDS
TGAATGTGCCAGGAAATGGA+GGG 0.719115 8:-25109132 MsG0880043459.01.T01:CDS
TGACATCATGGAAAGTGTGA+CGG 0.725106 8:-25109485 MsG0880043459.01.T01:CDS
GGAGAAGGAAAAGATGACGG+CGG 0.751070 8:-25109664 MsG0880043459.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CATGAATTGAGAAGATTTTG+AGG + Chr8:25109807-25109826 None:intergenic 30.0%
GGTGTTTCTTCATCTTCTAA+AGG + Chr8:25109657-25109676 None:intergenic 35.0%
TGGAAAAGTGATGTAGCATT+AGG + Chr8:25109777-25109796 None:intergenic 35.0%
TTCATAAGCAGCATTTCCAA+AGG + Chr8:25109628-25109647 None:intergenic 35.0%
TTCGAGATACTATCCTTATC+TGG - Chr8:25109465-25109484 MsG0880043459.01.T01:CDS 35.0%
! TTGGAAATGCTGCTTATGAA+AGG - Chr8:25109628-25109647 MsG0880043459.01.T01:CDS 35.0%
!! AATGCTACATCACTTTTCCA+TGG - Chr8:25109777-25109796 MsG0880043459.01.T01:CDS 35.0%
AACGAAGAGGAACAACAAAG+TGG - Chr8:25109054-25109073 MsG0880043459.01.T01:CDS 40.0%
AATAACCCTCAGCTGGTAAT+TGG + Chr8:25109830-25109849 None:intergenic 40.0%
AATTACCAGCTGAGGGTTAT+TGG - Chr8:25109829-25109848 MsG0880043459.01.T01:CDS 40.0%
ATTACCAGCTGAGGGTTATT+GGG - Chr8:25109830-25109849 MsG0880043459.01.T01:CDS 40.0%
ATTTGCAACTTCCATCACGT+GGG + Chr8:25109301-25109320 None:intergenic 40.0%
TGAAGGTCTCTAGTGAGAAA+TGG + Chr8:25108994-25109013 None:intergenic 40.0%
TGCAAATGGATGTGACATCA+TGG - Chr8:25109314-25109333 MsG0880043459.01.T01:CDS 40.0%
TTAGCCATATATCTAGCTGG+TGG - Chr8:25109528-25109547 MsG0880043459.01.T01:CDS 40.0%
TTGTCCACCAGCTAGATATA+TGG + Chr8:25109535-25109554 None:intergenic 40.0%
! ATATATCTAGCTGGTGGACA+AGG - Chr8:25109534-25109553 MsG0880043459.01.T01:CDS 40.0%
! TGACATCATGGAAAGTGTGA+CGG - Chr8:25109326-25109345 MsG0880043459.01.T01:CDS 40.0%
!! ACTTTGTTGTTCCTCTTCGT+TGG + Chr8:25109055-25109074 None:intergenic 40.0%
!! CGTTGTTTCGTTCTCGTTTT+TGG + Chr8:25109101-25109120 None:intergenic 40.0%
!! GAAGATTTTGAGGAACTCCA+TGG + Chr8:25109797-25109816 None:intergenic 40.0%
!! GGATTAGCCATATATCTAGC+TGG - Chr8:25109525-25109544 MsG0880043459.01.T01:CDS 40.0%
!! TTGGTGTGAAATTGATGGTG+AGG + Chr8:25109024-25109043 None:intergenic 40.0%
AGGTCTCTAGTGAGAAATGG+AGG + Chr8:25108991-25109010 None:intergenic 45.0%
CATTTGCAACTTCCATCACG+TGG + Chr8:25109302-25109321 None:intergenic 45.0%
CGAGAACGAAACAACGAAGA+CGG - Chr8:25109105-25109124 MsG0880043459.01.T01:CDS 45.0%
GAAGCTGCCATGATAACAAC+CGG + Chr8:25109606-25109625 None:intergenic 45.0%
GAGGAACAACAAAGTGGCAA+TGG - Chr8:25109060-25109079 MsG0880043459.01.T01:CDS 45.0%
GATGGTGAGGATGAAGATGA+AGG + Chr8:25109011-25109030 None:intergenic 45.0%
GGAGGAGAAGGAAAAGATGA+CGG - Chr8:25109144-25109163 MsG0880043459.01.T01:CDS 45.0%
GTTATCATGGCAGCTTCCTT+TGG - Chr8:25109609-25109628 MsG0880043459.01.T01:CDS 45.0%
TCATGCCAATTACCAGCTGA+GGG - Chr8:25109822-25109841 MsG0880043459.01.T01:CDS 45.0%
TCTCTAGTGAGAAATGGAGG+CGG + Chr8:25108988-25109007 None:intergenic 45.0%
TGAATGTGCCAGGAAATGGA+GGG - Chr8:25109679-25109698 MsG0880043459.01.T01:CDS 45.0%
TTACCAGCTGAGGGTTATTG+GGG - Chr8:25109831-25109850 MsG0880043459.01.T01:CDS 45.0%
TTCATGCCAATTACCAGCTG+AGG - Chr8:25109821-25109840 MsG0880043459.01.T01:CDS 45.0%
! CACGTGATGGAAGTTGCAAA+TGG - Chr8:25109300-25109319 MsG0880043459.01.T01:CDS 45.0%
! CTACAAGTTGTTGCTGTTGC+TGG + Chr8:25109749-25109768 None:intergenic 45.0%
! GGTGGTTGGTGTGAAATTGA+TGG + Chr8:25109029-25109048 None:intergenic 45.0%
! GTCATCTTTTCCTTCTCCTC+CGG + Chr8:25109145-25109164 None:intergenic 45.0%
! GTGATGATGATAGGTGGCTT+TGG + Chr8:25109252-25109271 None:intergenic 45.0%
! GTTGTTCCTCTTCGTTGGTT+TGG + Chr8:25109050-25109069 None:intergenic 45.0%
!! GGTTTGTTTTTCGAACCTGC+TGG + Chr8:25109231-25109250 None:intergenic 45.0%
!!! TTCGTTCTCGTTTTTGGCCT+CGG + Chr8:25109095-25109114 None:intergenic 45.0%
AAATGGAGGGTTAGGGTCAC+CGG - Chr8:25109692-25109711 MsG0880043459.01.T01:CDS 50.0%
ACGGAGAGTCACGTTTGTGA+CGG + Chr8:25109403-25109422 None:intergenic 50.0%
AGCCACCTATCATCATCACG+AGG - Chr8:25109253-25109272 MsG0880043459.01.T01:CDS 50.0%
CAACCACCAAACCAACGAAG+AGG - Chr8:25109041-25109060 MsG0880043459.01.T01:CDS 50.0%
CAACTTCCATCACGTGGGAT+CGG + Chr8:25109296-25109315 None:intergenic 50.0%
CCAGTGAATGTGCCAGGAAA+TGG - Chr8:25109675-25109694 MsG0880043459.01.T01:CDS 50.0%
CCATTTCCTGGCACATTCAC+TGG + Chr8:25109678-25109697 None:intergenic 50.0%
GAAACACCAGTGAATGTGCC+AGG - Chr8:25109669-25109688 MsG0880043459.01.T01:CDS 50.0%
GAGATGGGAAGAAGACCAAG+AGG - Chr8:25109201-25109220 MsG0880043459.01.T01:CDS 50.0%
GCCACCTATCATCATCACGA+GGG - Chr8:25109254-25109273 MsG0880043459.01.T01:CDS 50.0%
GGCAATGGTAACTTAAGCCG+AGG - Chr8:25109075-25109094 MsG0880043459.01.T01:CDS 50.0%
GTGAATGTGCCAGGAAATGG+AGG - Chr8:25109678-25109697 MsG0880043459.01.T01:CDS 50.0%
TCTGCATCCTTAGCGGAAGT+GGG - Chr8:25109376-25109395 MsG0880043459.01.T01:CDS 50.0%
TGCCAGGAAATGGAGGGTTA+GGG - Chr8:25109685-25109704 MsG0880043459.01.T01:CDS 50.0%
TGCCATGATAACAACCGGTC+CGG + Chr8:25109601-25109620 None:intergenic 50.0%
TTCCGGACCGGTTGTTATCA+TGG - Chr8:25109596-25109615 MsG0880043459.01.T01:CDS 50.0%
! ATCTTTTCCTTCTCCTCCGG+TGG + Chr8:25109142-25109161 None:intergenic 50.0%
! CTGTCCCTCGTGATGATGAT+AGG + Chr8:25109261-25109280 None:intergenic 50.0%
! GGAGAAGGAAAAGATGACGG+CGG - Chr8:25109147-25109166 MsG0880043459.01.T01:CDS 50.0%
! TCCCTCGTGATGATGATAGG+TGG + Chr8:25109258-25109277 None:intergenic 50.0%
! TCTTTTCCTTCTCCTCCGGT+GGG + Chr8:25109141-25109160 None:intergenic 50.0%
!! CTCTTCGTTGGTTTGGTGGT+TGG + Chr8:25109043-25109062 None:intergenic 50.0%
!! CTGCTGTTGTTGACTTCCCA+TGG + Chr8:25109721-25109740 None:intergenic 50.0%
!! GTTCCTCTTCGTTGGTTTGG+TGG + Chr8:25109047-25109066 None:intergenic 50.0%
!! TGTTGACTTCCCATGGTTCC+CGG + Chr8:25109714-25109733 None:intergenic 50.0%
AATGGAGGGTTAGGGTCACC+GGG - Chr8:25109693-25109712 MsG0880043459.01.T01:CDS 55.0%
AGACCAAGAGGAAGACCAGC+AGG - Chr8:25109213-25109232 MsG0880043459.01.T01:CDS 55.0%
CGGCAGGAAAGAGCCAGATA+AGG + Chr8:25109481-25109500 None:intergenic 55.0%
CGTGGTGTCTGCATCCTTAG+CGG - Chr8:25109369-25109388 MsG0880043459.01.T01:CDS 55.0%
GACCCTAACCCTCCATTTCC+TGG + Chr8:25109690-25109709 None:intergenic 55.0%
GGTGCGGTAGTCACACTTCA+CGG - Chr8:25109438-25109457 MsG0880043459.01.T01:CDS 55.0%
GTCTGCATCCTTAGCGGAAG+TGG - Chr8:25109375-25109394 MsG0880043459.01.T01:CDS 55.0%
GTGAGAAATGGAGGCGGAAG+AGG + Chr8:25108982-25109001 None:intergenic 55.0%
GTGCCAGGAAATGGAGGGTT+AGG - Chr8:25109684-25109703 MsG0880043459.01.T01:CDS 55.0%
TGAAGTGTGACTACCGCACC+AGG + Chr8:25109438-25109457 None:intergenic 55.0%
TTAGGGTCACCGGGAACCAT+GGG - Chr8:25109702-25109721 MsG0880043459.01.T01:CDS 55.0%
! GGAAAAGATGACGGCGGTAG+CGG - Chr8:25109153-25109172 MsG0880043459.01.T01:CDS 55.0%
! GGAGGAAGTGGTGGTGAGAT+GGG - Chr8:25109186-25109205 MsG0880043459.01.T01:CDS 55.0%
! TCTAGCTGGTGGACAAGGAC+AGG - Chr8:25109539-25109558 MsG0880043459.01.T01:CDS 55.0%
! TGGAGGAAGTGGTGGTGAGA+TGG - Chr8:25109185-25109204 MsG0880043459.01.T01:CDS 55.0%
!! GAACCTGCTGGTCTTCCTCT+TGG + Chr8:25109219-25109238 None:intergenic 55.0%
AACACTCCCACCGGAGGAGA+AGG - Chr8:25109132-25109151 MsG0880043459.01.T01:CDS 60.0%
ACCGGTCCGGAAGCCAACAA+CGG + Chr8:25109588-25109607 None:intergenic 60.0%
ATGGCTAATCCTGACGCCGC+TGG + Chr8:25109516-25109535 None:intergenic 60.0%
CCACCCCAATAACCCTCAGC+TGG + Chr8:25109837-25109856 None:intergenic 60.0%
CCAGCTGAGGGTTATTGGGG+TGG - Chr8:25109834-25109853 MsG0880043459.01.T01:CDS 60.0%
GACAAGGACAGGTCGTCGGT+GGG - Chr8:25109550-25109569 MsG0880043459.01.T01:CDS 60.0%
GACGGCAACAACACTCCCAC+CGG - Chr8:25109123-25109142 MsG0880043459.01.T01:CDS 60.0%
GGTGGACAAGGACAGGTCGT+CGG - Chr8:25109546-25109565 MsG0880043459.01.T01:CDS 60.0%
GTGTGACGGTCTTTGCGCGA+AGG - Chr8:25109340-25109359 MsG0880043459.01.T01:CDS 60.0%
GTTAGGGTCACCGGGAACCA+TGG - Chr8:25109701-25109720 MsG0880043459.01.T01:CDS 60.0%
TCAACCAGCATCGCCTGGTG+CGG - Chr8:25109422-25109441 MsG0880043459.01.T01:CDS 60.0%
TGACGGTCCCACTTCCGCTA+AGG + Chr8:25109386-25109405 None:intergenic 60.0%
TGACGGTCTTTGCGCGAAGG+AGG - Chr8:25109343-25109362 MsG0880043459.01.T01:CDS 60.0%
! CACCAGGCGATGCTGGTTGA+CGG + Chr8:25109422-25109441 None:intergenic 60.0%
!! ACCGTTGTTGGCTTCCGGAC+CGG - Chr8:25109584-25109603 MsG0880043459.01.T01:CDS 60.0%
!! AGTGCTGGTGGAGGAAGTGG+TGG - Chr8:25109177-25109196 MsG0880043459.01.T01:CDS 60.0%
!! GGAAGTGCTGGTGGAGGAAG+TGG - Chr8:25109174-25109193 MsG0880043459.01.T01:CDS 60.0%
!! GTGGGACCGTTGTTGGCTTC+CGG - Chr8:25109579-25109598 MsG0880043459.01.T01:CDS 60.0%
ACTACCGCACCAGGCGATGC+TGG + Chr8:25109429-25109448 None:intergenic 65.0%
CGCACTCCGATCCCACGTGA+TGG - Chr8:25109287-25109306 MsG0880043459.01.T01:CDS 65.0%
CTCCGTCAACCAGCATCGCC+TGG - Chr8:25109417-25109436 MsG0880043459.01.T01:CDS 65.0%
GCTAATCCTGACGCCGCTGG+TGG + Chr8:25109513-25109532 None:intergenic 65.0%
GGACAAGGACAGGTCGTCGG+TGG - Chr8:25109549-25109568 MsG0880043459.01.T01:CDS 65.0%
GGCAACAACACTCCCACCGG+AGG - Chr8:25109126-25109145 MsG0880043459.01.T01:CDS 65.0%
TTTGCGCGAAGGAGGCAGCG+TGG - Chr8:25109351-25109370 MsG0880043459.01.T01:CDS 65.0%
! GAGCGTGGTGGGACCGTTGT+TGG - Chr8:25109572-25109591 MsG0880043459.01.T01:CDS 65.0%
!! GGTAGCGGAAGTGCTGGTGG+AGG - Chr8:25109168-25109187 MsG0880043459.01.T01:CDS 65.0%
ACAGGTCGTCGGTGGGAGCG+TGG - Chr8:25109557-25109576 MsG0880043459.01.T01:CDS 70.0%
! GTCGTCGGTGGGAGCGTGGT+GGG - Chr8:25109561-25109580 MsG0880043459.01.T01:CDS 70.0%
!! GACGGCGGTAGCGGAAGTGC+TGG - Chr8:25109162-25109181 MsG0880043459.01.T01:CDS 70.0%
!! GGCGGTAGCGGAAGTGCTGG+TGG - Chr8:25109165-25109184 MsG0880043459.01.T01:CDS 70.0%
CCTGACGCCGCTGGTGGAGC+AGG + Chr8:25109507-25109526 None:intergenic 75.0%
CCTGCTCCACCAGCGGCGTC+AGG - Chr8:25109504-25109523 MsG0880043459.01.T01:CDS 75.0%
GACGCCGCTGGTGGAGCAGG+CGG + Chr8:25109504-25109523 None:intergenic 75.0%
! GGTCGTCGGTGGGAGCGTGG+TGG - Chr8:25109560-25109579 MsG0880043459.01.T01:CDS 75.0%
! CTGGTGGAGCAGGCGGCGGC+AGG + Chr8:25109497-25109516 None:intergenic 80.0%
! GCCGCCGCCTGCTCCACCAG+CGG - Chr8:25109497-25109516 MsG0880043459.01.T01:CDS 80.0%
! GCCGCTGGTGGAGCAGGCGG+CGG + Chr8:25109501-25109520 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr8 gene 25108955 25109878 25108955 ID=MsG0880043459.01;Name=MsG0880043459.01
Chr8 mRNA 25108955 25109878 25108955 ID=MsG0880043459.01.T01;Parent=MsG0880043459.01;Name=MsG0880043459.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|307
Chr8 exon 25108955 25109878 25108955 ID=MsG0880043459.01.T01:exon:1116;Parent=MsG0880043459.01.T01
Chr8 CDS 25108955 25109878 25108955 ID=MsG0880043459.01.T01:cds;Parent=MsG0880043459.01.T01
Gene Sequence

>MsG0880043459.01.T01

ATGGATCAAGTAGCTCAAGGTCGTCCTCTTCCGCCTCCATTTCTCACTAGAGACCTTCATCTTCATCCTCACCATCAATTTCACACCAACCACCAAACCAACGAAGAGGAACAACAAAGTGGCAATGGTAACTTAAGCCGAGGCCAAAAACGAGAACGAAACAACGAAGACGGCAACAACACTCCCACCGGAGGAGAAGGAAAAGATGACGGCGGTAGCGGAAGTGCTGGTGGAGGAAGTGGTGGTGAGATGGGAAGAAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAACCAAAGCCACCTATCATCATCACGAGGGACAGCGCGAACGCACTCCGATCCCACGTGATGGAAGTTGCAAATGGATGTGACATCATGGAAAGTGTGACGGTCTTTGCGCGAAGGAGGCAGCGTGGTGTCTGCATCCTTAGCGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCGCCTGGTGCGGTAGTCACACTTCACGGAAGATTCGAGATACTATCCTTATCTGGCTCTTTCCTGCCGCCGCCTGCTCCACCAGCGGCGTCAGGATTAGCCATATATCTAGCTGGTGGACAAGGACAGGTCGTCGGTGGGAGCGTGGTGGGACCGTTGTTGGCTTCCGGACCGGTTGTTATCATGGCAGCTTCCTTTGGAAATGCTGCTTATGAAAGGTTACCTTTAGAAGATGAAGAAACACCAGTGAATGTGCCAGGAAATGGAGGGTTAGGGTCACCGGGAACCATGGGAAGTCAACAACAGCAGCAGAACCAGCAACAGCAACAACTTGTAGCAGATCCTAATGCTACATCACTTTTCCATGGAGTTCCTCAAAATCTTCTCAATTCATGCCAATTACCAGCTGAGGGTTATTGGGGTGGAAGTGCTCGTCCTCCTTTTTAA

Protein sequence

>MsG0880043459.01.T01

MDQVAQGRPLPPPFLTRDLHLHPHHQFHTNHQTNEEEQQSGNGNLSRGQKRERNNEDGNNTPTGGEGKDDGGSGSAGGGSGGEMGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPVNVPGNGGLGSPGTMGSQQQQQNQQQQQLVADPNATSLFHGVPQNLLNSCQLPAEGYWGGSARPPF*