Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013213.01.T01 | XP_013459315.1 | 82.927 | 82 | 14 | 0 | 1 | 82 | 73 | 154 | 4.43E-43 | 147 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013213.01.T01 | P62929 | 62.745 | 51 | 19 | 0 | 1 | 51 | 66 | 116 | 1.58E-18 | 76.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013213.01.T01 | I3T793 | 82.927 | 82 | 14 | 0 | 1 | 82 | 73 | 154 | 2.12e-43 | 147 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080049129.01 | MsG0380013213.01 | -0.802652 | 5.068848e-49 | 2.496452e-46 |
MsG0180000412.01 | MsG0380013213.01 | -0.802004 | 6.890809e-49 | 3.338297e-46 |
MsG0180001079.01 | MsG0380013213.01 | 0.801615 | 8.283405e-49 | 3.973409e-46 |
MsG0180002255.01 | MsG0380013213.01 | 0.820022 | 8.542737e-53 | 6.682554e-50 |
MsG0180003237.01 | MsG0380013213.01 | 0.803763 | 2.985265e-49 | 1.512742e-46 |
MsG0180003320.01 | MsG0380013213.01 | 0.802648 | 5.076581e-49 | 2.500077e-46 |
MsG0180003375.01 | MsG0380013213.01 | 0.812955 | 3.267376e-51 | 2.105817e-48 |
MsG0180004059.01 | MsG0380013213.01 | 0.818825 | 1.600996e-52 | 1.211288e-49 |
MsG0180004232.01 | MsG0380013213.01 | 0.812673 | 3.766213e-51 | 2.409497e-48 |
MsG0180004359.01 | MsG0380013213.01 | 0.819020 | 1.445735e-52 | 1.099839e-49 |
MsG0180004424.01 | MsG0380013213.01 | 0.869750 | 2.449537e-66 | 9.293279e-63 |
MsG0180004662.01 | MsG0380013213.01 | -0.816534 | 5.263033e-52 | 3.739005e-49 |
MsG0180005059.01 | MsG0380013213.01 | 0.860129 | 2.562157e-63 | 6.930540e-60 |
MsG0180005060.01 | MsG0380013213.01 | 0.847400 | 1.184313e-59 | 2.102454e-56 |
MsG0180005080.01 | MsG0380013213.01 | 0.827782 | 1.293755e-54 | 1.261448e-51 |
MsG0180005082.01 | MsG0380013213.01 | 0.859264 | 4.664806e-63 | 1.224554e-59 |
MsG0180005130.01 | MsG0380013213.01 | 0.867558 | 1.252732e-65 | 4.392691e-62 |
MsG0180005143.01 | MsG0380013213.01 | 0.864501 | 1.161910e-64 | 3.655921e-61 |
MsG0180005898.01 | MsG0380013213.01 | -0.810007 | 1.427923e-50 | 8.510931e-48 |
MsG0180006253.01 | MsG0380013213.01 | 0.834959 | 2.215954e-56 | 2.671305e-53 |
MsG0280010569.01 | MsG0380013213.01 | -0.803466 | 3.439395e-49 | 1.729617e-46 |
MsG0280010623.01 | MsG0380013213.01 | 0.838162 | 3.387524e-57 | 4.498766e-54 |
MsG0280010926.01 | MsG0380013213.01 | -0.836951 | 6.925441e-57 | 8.863567e-54 |
MsG0380013212.01 | MsG0380013213.01 | 0.945509 | 2.670541e-104 | 4.110273e-99 |
MsG0380013213.01 | MsG0380013214.01 | 0.899710 | 1.513276e-77 | 1.893257e-73 |
MsG0380013213.01 | MsG0380013219.01 | 0.888830 | 4.168849e-73 | 3.280586e-69 |
MsG0380013213.01 | MsG0380013226.01 | 0.888803 | 4.268933e-73 | 3.355771e-69 |
MsG0380013213.01 | MsG0380013239.01 | 0.924071 | 1.149138e-89 | 4.759449e-85 |
MsG0380013213.01 | MsG0380013530.01 | -0.806032 | 1.001454e-49 | 5.379705e-47 |
MsG0380013213.01 | MsG0380015496.01 | -0.815205 | 1.041623e-51 | 7.135205e-49 |
MsG0380013213.01 | MsG0380015659.01 | 0.829011 | 6.534056e-55 | 6.603523e-52 |
MsG0380013213.01 | MsG0380016458.01 | 0.818814 | 1.610731e-52 | 1.218230e-49 |
MsG0380013213.01 | MsG0380016751.01 | -0.801557 | 8.511900e-49 | 4.077160e-46 |
MsG0380013213.01 | MsG0380016836.01 | -0.802668 | 5.029266e-49 | 2.478004e-46 |
MsG0380013213.01 | MsG0380017033.01 | -0.802301 | 5.986813e-49 | 2.922574e-46 |
MsG0380013213.01 | MsG0380017200.01 | 0.842194 | 3.001201e-58 | 4.515034e-55 |
MsG0380013213.01 | MsG0380017918.01 | -0.812189 | 4.805384e-51 | 3.034936e-48 |
MsG0380013213.01 | MsG0480018439.01 | 0.829800 | 4.203582e-55 | 4.348649e-52 |
MsG0380013213.01 | MsG0480018559.01 | 0.818377 | 2.023031e-52 | 1.511908e-49 |
MsG0380013213.01 | MsG0480018617.01 | 0.839428 | 1.593892e-57 | 2.200587e-54 |
MsG0380013213.01 | MsG0480018621.01 | 0.813377 | 2.639855e-51 | 1.721150e-48 |
MsG0380013213.01 | MsG0480018692.01 | 0.867169 | 1.668277e-65 | 5.768067e-62 |
MsG0380013213.01 | MsG0480018693.01 | 0.855152 | 7.644038e-62 | 1.747894e-58 |
MsG0380013213.01 | MsG0480018697.01 | 0.873074 | 1.948834e-67 | 8.346643e-64 |
MsG0380013213.01 | MsG0480019322.01 | 0.826346 | 2.852975e-54 | 2.668674e-51 |
MsG0380013213.01 | MsG0480019325.01 | 0.801547 | 8.551259e-49 | 4.094945e-46 |
MsG0380013213.01 | MsG0480019346.01 | 0.841015 | 6.138014e-58 | 8.900415e-55 |
MsG0380013213.01 | MsG0480019348.01 | 0.805307 | 1.422120e-49 | 7.498284e-47 |
MsG0380013213.01 | MsG0480020285.01 | 0.839796 | 1.278526e-57 | 1.785172e-54 |
MsG0380013213.01 | MsG0480020350.01 | -0.802246 | 6.143734e-49 | 2.994928e-46 |
MsG0380013213.01 | MsG0480020704.01 | -0.800231 | 1.588118e-48 | 7.355850e-46 |
MsG0380013213.01 | MsG0480021091.01 | 0.811290 | 7.539726e-51 | 4.648709e-48 |
MsG0380013213.01 | MsG0480021133.01 | 0.827496 | 1.515038e-54 | 1.465116e-51 |
MsG0380013213.01 | MsG0480021640.01 | 0.800957 | 1.129294e-48 | 5.328290e-46 |
MsG0380013213.01 | MsG0480022646.01 | -0.800188 | 1.620087e-48 | 7.495810e-46 |
MsG0380013213.01 | MsG0480023429.01 | 0.814398 | 1.572474e-51 | 1.054024e-48 |
MsG0380013213.01 | MsG0480023431.01 | 0.801923 | 7.161140e-49 | 3.462118e-46 |
MsG0380013213.01 | MsG0480023432.01 | 0.815136 | 1.078937e-51 | 7.376938e-49 |
MsG0380013213.01 | MsG0580024567.01 | -0.813498 | 2.482457e-51 | 1.623887e-48 |
MsG0380013213.01 | MsG0580024649.01 | 0.810424 | 1.160530e-50 | 6.992727e-48 |
MsG0380013213.01 | MsG0580024782.01 | 0.824493 | 7.833840e-54 | 6.949755e-51 |
MsG0380013213.01 | MsG0580024994.01 | 0.811249 | 7.692908e-51 | 4.738321e-48 |
MsG0380013213.01 | MsG0580025007.01 | 0.846048 | 2.773120e-59 | 4.713508e-56 |
MsG0380013213.01 | MsG0580025024.01 | 0.877465 | 6.151765e-69 | 3.096161e-65 |
MsG0380013213.01 | MsG0580025097.01 | -0.812335 | 4.465457e-51 | 2.831533e-48 |
MsG0380013213.01 | MsG0580025193.01 | 0.835160 | 1.972730e-56 | 2.392249e-53 |
MsG0380013213.01 | MsG0580025252.01 | -0.808705 | 2.715582e-50 | 1.563518e-47 |
MsG0380013213.01 | MsG0580025413.01 | -0.826252 | 3.003307e-54 | 2.801708e-51 |
MsG0380013213.01 | MsG0580026148.01 | 0.832978 | 6.943018e-56 | 7.886751e-53 |
MsG0380013213.01 | MsG0580026521.01 | 0.804919 | 1.714679e-49 | 8.952018e-47 |
MsG0380013213.01 | MsG0580027254.01 | -0.809763 | 1.611213e-50 | 9.542506e-48 |
MsG0380013213.01 | MsG0580027458.01 | -0.802598 | 5.199189e-49 | 2.557261e-46 |
MsG0380013213.01 | MsG0580027751.01 | 0.817735 | 2.825921e-52 | 2.074917e-49 |
MsG0380013213.01 | MsG0580027752.01 | 0.825691 | 4.082151e-54 | 3.747854e-51 |
MsG0380013213.01 | MsG0580027753.01 | 0.837754 | 4.311862e-57 | 5.656620e-54 |
MsG0380013213.01 | MsG0580027776.01 | 0.810889 | 9.209115e-51 | 5.618681e-48 |
MsG0380013213.01 | MsG0580027777.01 | 0.818099 | 2.339083e-52 | 1.734493e-49 |
MsG0380013213.01 | MsG0580028495.01 | -0.814663 | 1.373662e-51 | 9.273054e-49 |
MsG0380013213.01 | MsG0580029291.01 | 0.811427 | 7.038170e-51 | 4.355594e-48 |
MsG0380013213.01 | MsG0580029518.01 | 0.800689 | 1.281270e-48 | 6.003909e-46 |
MsG0380013213.01 | MsG0580029682.01 | -0.803972 | 2.700508e-49 | 1.375869e-46 |
MsG0380013213.01 | MsG0580029937.01 | 0.820411 | 6.957124e-53 | 5.500968e-50 |
MsG0380013213.01 | MsG0580029938.01 | 0.818425 | 1.973984e-52 | 1.477157e-49 |
MsG0380013213.01 | MsG0680030379.01 | 0.832246 | 1.054792e-55 | 1.172147e-52 |
MsG0380013213.01 | MsG0680030382.01 | 0.818022 | 2.434220e-52 | 1.801308e-49 |
MsG0380013213.01 | MsG0680031200.01 | 0.815513 | 8.896142e-52 | 6.146325e-49 |
MsG0380013213.01 | MsG0680032026.01 | 0.820647 | 6.141217e-53 | 4.887107e-50 |
MsG0380013213.01 | MsG0680032245.01 | -0.804265 | 2.347234e-49 | 1.204837e-46 |
MsG0380013213.01 | MsG0680032461.01 | 0.835633 | 1.498230e-56 | 1.842717e-53 |
MsG0380013213.01 | MsG0680032515.01 | -0.805492 | 1.300548e-49 | 6.890075e-47 |
MsG0380013213.01 | MsG0680034391.01 | 0.815351 | 9.665942e-52 | 6.648354e-49 |
MsG0380013213.01 | MsG0680034974.01 | 0.872438 | 3.180607e-67 | 1.331067e-63 |
MsG0380013213.01 | MsG0680034978.01 | 0.818380 | 2.019994e-52 | 1.509777e-49 |
MsG0380013213.01 | MsG0680034981.01 | 0.807208 | 5.655243e-50 | 3.131133e-47 |
MsG0380013213.01 | MsG0680035664.01 | -0.801791 | 7.621321e-49 | 3.672275e-46 |
MsG0380013213.01 | MsG0780035932.01 | 0.811771 | 5.925513e-51 | 3.700326e-48 |
MsG0380013213.01 | MsG0780036208.01 | 0.805838 | 1.100024e-49 | 5.880079e-47 |
MsG0380013213.01 | MsG0780036258.01 | 0.802499 | 5.450416e-49 | 2.673971e-46 |
MsG0380013213.01 | MsG0780036259.01 | 0.827857 | 1.241229e-54 | 1.213027e-51 |
MsG0380013213.01 | MsG0780036260.01 | 0.855449 | 6.262661e-62 | 1.446447e-58 |
MsG0380013213.01 | MsG0780036376.01 | 0.845216 | 4.662996e-59 | 7.715697e-56 |
MsG0380013213.01 | MsG0780036649.01 | 0.822691 | 2.068308e-53 | 1.743727e-50 |
MsG0380013213.01 | MsG0780036839.01 | 0.807187 | 5.713936e-50 | 3.161853e-47 |
MsG0380013213.01 | MsG0780038307.01 | 0.829068 | 6.330350e-55 | 6.408397e-52 |
MsG0380013213.01 | MsG0780038519.01 | 0.812551 | 4.004466e-51 | 2.553810e-48 |
MsG0380013213.01 | MsG0780039686.01 | 0.847857 | 8.867479e-60 | 1.597309e-56 |
MsG0380013213.01 | MsG0780039923.01 | 0.820989 | 5.125423e-53 | 4.118505e-50 |
MsG0380013213.01 | MsG0780040498.01 | 0.802519 | 5.399294e-49 | 2.650185e-46 |
MsG0380013213.01 | MsG0780040615.01 | 0.800030 | 1.745092e-48 | 8.041710e-46 |
MsG0380013213.01 | MsG0780040670.01 | 0.822809 | 1.942306e-53 | 1.642969e-50 |
MsG0380013213.01 | MsG0780041004.01 | -0.813219 | 2.859234e-51 | 1.855992e-48 |
MsG0380013213.01 | MsG0780041447.01 | 0.822561 | 2.217754e-53 | 1.862919e-50 |
MsG0380013213.01 | MsG0880042256.01 | -0.804371 | 2.230528e-49 | 1.148107e-46 |
MsG0380013213.01 | MsG0880042633.01 | 0.822726 | 2.030141e-53 | 1.713285e-50 |
MsG0380013213.01 | MsG0880042642.01 | 0.855206 | 7.370244e-62 | 1.688257e-58 |
MsG0380013213.01 | MsG0880042728.01 | 0.834271 | 3.300451e-56 | 3.897319e-53 |
MsG0380013213.01 | MsG0880042876.01 | -0.800037 | 1.739297e-48 | 8.016520e-46 |
MsG0380013213.01 | MsG0880043459.01 | 0.837849 | 4.076663e-57 | 5.363323e-54 |
MsG0380013213.01 | MsG0880043530.01 | 0.819393 | 1.189276e-52 | 9.139899e-50 |
MsG0380013213.01 | MsG0880043621.01 | -0.800965 | 1.125408e-48 | 5.310980e-46 |
MsG0380013213.01 | MsG0880043997.01 | 0.820826 | 5.587218e-53 | 4.468814e-50 |
MsG0380013213.01 | MsG0880044026.01 | 0.829517 | 4.925319e-55 | 5.052446e-52 |
MsG0380013213.01 | MsG0880044558.01 | -0.803146 | 4.005898e-49 | 1.997990e-46 |
MsG0380013213.01 | MsG0880045801.01 | 0.801227 | 9.945820e-49 | 4.724548e-46 |
MsG0380013213.01 | MsG0880045854.01 | 0.829359 | 5.381324e-55 | 5.495444e-52 |
MsG0380013213.01 | MsG0880046038.01 | 0.803787 | 2.951396e-49 | 1.496515e-46 |
MsG0380013213.01 | MsG0880046166.01 | 0.853170 | 2.851378e-61 | 6.105242e-58 |
MsG0380013213.01 | MsG0880046324.01 | -0.803832 | 2.888062e-49 | 1.466112e-46 |
MsG0380013213.01 | MsG0880046403.01 | 0.831423 | 1.683472e-55 | 1.825973e-52 |
MsG0380013213.01 | MsG0880046923.01 | 0.814475 | 1.511873e-51 | 1.015520e-48 |
MsG0380013213.01 | MsG0880046946.01 | 0.810708 | 1.007659e-50 | 6.118258e-48 |
MsG0380013213.01 | MsG0880047259.01 | 0.822373 | 2.452263e-53 | 2.048920e-50 |
MsG0380013213.01 | MsG0880047312.01 | 0.830540 | 2.773331e-55 | 2.930440e-52 |
MsG0380013213.01 | MsG0880047383.01 | 0.812014 | 5.247221e-51 | 3.298142e-48 |
MsG0380013213.01 | MsG0880047460.01 | 0.830401 | 2.998088e-55 | 3.155336e-52 |
MsG0380013213.01 | MsG0880047697.01 | 0.810560 | 1.084874e-50 | 6.560668e-48 |
MsG0280007513.01 | MsG0380013213.01 | 0.827948 | 1.180082e-54 | 1.156320e-51 |
MsG0280007670.01 | MsG0380013213.01 | 0.814596 | 1.421112e-51 | 9.576386e-49 |
MsG0280007677.01 | MsG0380013213.01 | 0.859714 | 3.415642e-63 | 9.106782e-60 |
MsG0280007678.01 | MsG0380013213.01 | 0.811580 | 6.521482e-51 | 4.051921e-48 |
MsG0280007689.01 | MsG0380013213.01 | 0.830100 | 3.552398e-55 | 3.706181e-52 |
MsG0280008178.01 | MsG0380013213.01 | 0.845020 | 5.269702e-59 | 8.665242e-56 |
MsG0280008180.01 | MsG0380013213.01 | 0.843023 | 1.808191e-58 | 2.791902e-55 |
MsG0280008309.01 | MsG0380013213.01 | -0.804613 | 1.985638e-49 | 1.028433e-46 |
MsG0280009253.01 | MsG0380013213.01 | 0.834926 | 2.258972e-56 | 2.720380e-53 |
MsG0280010425.01 | MsG0380013213.01 | 0.844456 | 7.474081e-59 | 1.207273e-55 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380013213.01.T01 | MTR_3g436100 | 82.927 | 82 | 14 | 0 | 1 | 82 | 73 | 154 | 5.37e-47 | 147 |
MsG0380013213.01.T01 | MTR_7g044920 | 62.651 | 83 | 30 | 1 | 1 | 82 | 70 | 152 | 1.96e-34 | 115 |
MsG0380013213.01.T01 | MTR_7g044980 | 62.195 | 82 | 30 | 1 | 2 | 82 | 64 | 145 | 6.46e-33 | 111 |
MsG0380013213.01.T01 | MTR_8g056800 | 53.086 | 81 | 38 | 0 | 2 | 82 | 21 | 101 | 1.87e-27 | 95.9 |
MsG0380013213.01.T01 | MTR_6g017170 | 69.643 | 56 | 16 | 1 | 1 | 55 | 68 | 123 | 5.29e-24 | 87.8 |
MsG0380013213.01.T01 | MTR_3g067437 | 64.407 | 59 | 21 | 0 | 2 | 60 | 69 | 127 | 6.09e-24 | 87.8 |
MsG0380013213.01.T01 | MTR_8g022400 | 66.071 | 56 | 18 | 1 | 2 | 56 | 69 | 124 | 4.66e-23 | 86.3 |
MsG0380013213.01.T01 | MTR_8g022420 | 60.938 | 64 | 24 | 1 | 2 | 64 | 68 | 131 | 1.33e-22 | 84.7 |
MsG0380013213.01.T01 | MTR_8g022430 | 57.576 | 66 | 26 | 2 | 1 | 64 | 68 | 133 | 4.59e-22 | 83.6 |
MsG0380013213.01.T01 | MTR_3g067500 | 54.839 | 62 | 28 | 0 | 1 | 62 | 46 | 107 | 9.05e-22 | 82.0 |
MsG0380013213.01.T01 | MTR_6g017150 | 54.545 | 77 | 23 | 2 | 1 | 76 | 68 | 133 | 2.93e-21 | 81.3 |
MsG0380013213.01.T01 | MTR_3g067580 | 52.308 | 65 | 30 | 1 | 2 | 65 | 77 | 141 | 3.14e-20 | 79.0 |
MsG0380013213.01.T01 | MTR_3g067540 | 48.052 | 77 | 29 | 1 | 2 | 78 | 73 | 138 | 4.34e-20 | 78.2 |
MsG0380013213.01.T01 | MTR_3g067555 | 48.052 | 77 | 29 | 1 | 2 | 78 | 73 | 138 | 4.34e-20 | 78.2 |
MsG0380013213.01.T01 | MTR_3g467760 | 50.000 | 68 | 33 | 1 | 2 | 68 | 43 | 110 | 5.24e-20 | 77.4 |
MsG0380013213.01.T01 | MTR_3g067555 | 48.052 | 77 | 29 | 1 | 2 | 78 | 60 | 125 | 5.60e-20 | 77.8 |
MsG0380013213.01.T01 | MTR_3g067550 | 48.052 | 77 | 29 | 1 | 2 | 78 | 52 | 117 | 6.01e-20 | 77.4 |
MsG0380013213.01.T01 | MTR_3g067555 | 48.052 | 77 | 29 | 1 | 2 | 78 | 52 | 117 | 6.01e-20 | 77.4 |
MsG0380013213.01.T01 | MTR_3g067430 | 46.753 | 77 | 30 | 1 | 2 | 78 | 73 | 138 | 7.08e-20 | 77.8 |
MsG0380013213.01.T01 | MTR_7g056803 | 55.738 | 61 | 26 | 1 | 5 | 64 | 74 | 134 | 7.12e-20 | 77.8 |
MsG0380013213.01.T01 | MTR_7g056817 | 52.308 | 65 | 30 | 1 | 1 | 64 | 71 | 135 | 8.13e-20 | 77.8 |
MsG0380013213.01.T01 | MTR_3g067270 | 50.000 | 68 | 33 | 1 | 2 | 68 | 67 | 134 | 1.33e-19 | 77.0 |
MsG0380013213.01.T01 | MTR_3g467750 | 50.000 | 68 | 33 | 1 | 2 | 68 | 67 | 134 | 1.33e-19 | 77.0 |
MsG0380013213.01.T01 | MTR_3g067280 | 50.000 | 68 | 33 | 1 | 2 | 68 | 67 | 134 | 1.51e-19 | 77.0 |
MsG0380013213.01.T01 | MTR_3g067570 | 67.391 | 46 | 15 | 0 | 2 | 47 | 45 | 90 | 1.71e-19 | 75.5 |
MsG0380013213.01.T01 | MTR_3g463570 | 46.250 | 80 | 31 | 2 | 2 | 80 | 68 | 136 | 1.76e-19 | 76.6 |
MsG0380013213.01.T01 | MTR_3g067535 | 51.948 | 77 | 24 | 2 | 2 | 78 | 71 | 134 | 5.69e-19 | 75.5 |
MsG0380013213.01.T01 | MTR_3g463570 | 46.250 | 80 | 31 | 2 | 2 | 80 | 88 | 156 | 6.56e-19 | 75.9 |
MsG0380013213.01.T01 | MTR_4g026590 | 46.341 | 82 | 33 | 1 | 1 | 82 | 75 | 145 | 7.44e-19 | 75.5 |
MsG0380013213.01.T01 | MTR_6g036620 | 48.718 | 78 | 29 | 2 | 1 | 78 | 66 | 132 | 1.93e-18 | 73.9 |
MsG0380013213.01.T01 | MTR_3g067510 | 65.217 | 46 | 16 | 0 | 2 | 47 | 75 | 120 | 3.71e-18 | 73.2 |
MsG0380013213.01.T01 | MTR_3g067510 | 65.217 | 46 | 16 | 0 | 2 | 47 | 70 | 115 | 4.09e-18 | 73.2 |
MsG0380013213.01.T01 | MTR_6g047900 | 45.122 | 82 | 32 | 3 | 1 | 81 | 65 | 134 | 4.12e-18 | 73.2 |
MsG0380013213.01.T01 | MTR_8g461020 | 46.575 | 73 | 28 | 2 | 1 | 72 | 67 | 129 | 2.64e-17 | 71.2 |
MsG0380013213.01.T01 | MTR_6g047880 | 44.444 | 81 | 33 | 2 | 1 | 81 | 69 | 137 | 4.30e-17 | 70.5 |
MsG0380013213.01.T01 | MTR_1g019650 | 49.020 | 51 | 26 | 0 | 5 | 55 | 60 | 110 | 9.72e-15 | 63.9 |
MsG0380013213.01.T01 | MTR_3g067445 | 54.545 | 44 | 20 | 0 | 2 | 45 | 73 | 116 | 9.82e-15 | 63.9 |
MsG0380013213.01.T01 | MTR_3g436120 | 77.500 | 40 | 9 | 0 | 43 | 82 | 62 | 101 | 2.15e-14 | 62.8 |
MsG0380013213.01.T01 | MTR_7g029540 | 40.385 | 52 | 31 | 0 | 1 | 52 | 69 | 120 | 1.82e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 14 sgRNAs with CRISPR-Local
Find 18 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAATGCTGATATTGAATA+TGG | 0.285356 | 3:+33014191 | MsG0380013213.01.T01:CDS |
AGACTACTTGAAGATGGATT+TGG | 0.327144 | 3:+33014316 | MsG0380013213.01.T01:CDS |
GTAGAACGTTACTTCAAGAT+TGG | 0.390047 | 3:+33014239 | MsG0380013213.01.T01:CDS |
CCATATTCAATATCAGCATT+AGG | 0.437256 | 3:-33014191 | None:intergenic |
TGAGAAATATCATTCTTAAG+TGG | 0.452118 | 3:-33014345 | None:intergenic |
GAGTGCATCAAGAAGGGAAG+TGG | 0.522512 | 3:+33014149 | MsG0380013213.01.T01:CDS |
TCATGCCGAGTGCATCAAGA+AGG | 0.559241 | 3:+33014142 | MsG0380013213.01.T01:CDS |
CGTTCTACTTCATTTACAGA+GGG | 0.574809 | 3:-33014224 | None:intergenic |
ACTTCCCTTCTTGATGCACT+CGG | 0.605609 | 3:-33014147 | None:intergenic |
CATGCCGAGTGCATCAAGAA+GGG | 0.625240 | 3:+33014143 | MsG0380013213.01.T01:CDS |
ACGTTCTACTTCATTTACAG+AGG | 0.638520 | 3:-33014225 | None:intergenic |
ATGCTGATATTGAATATGGA+TGG | 0.639133 | 3:+33014195 | MsG0380013213.01.T01:CDS |
AGTGCATCAAGAAGGGAAGT+GGG | 0.648471 | 3:+33014150 | MsG0380013213.01.T01:CDS |
ACATAATATGAAGATGATCG+AGG | 0.692790 | 3:+33014097 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAAGAAATTTTTTACTACA+GGG | - | Chr3:33014271-33014290 | None:intergenic | 20.0% |
!!! | TTGAAGAAATTTTTTACTAC+AGG | - | Chr3:33014272-33014291 | None:intergenic | 20.0% |
ATGCTGATATTGAATATGGA+TGG | + | Chr3:33014195-33014214 | MsG0380013213.01.T01:CDS | 30.0% | |
CCATATTCAATATCAGCATT+AGG | - | Chr3:33014194-33014213 | None:intergenic | 30.0% | |
CCTAATGCTGATATTGAATA+TGG | + | Chr3:33014191-33014210 | MsG0380013213.01.T01:CDS | 30.0% | |
TGAAAAAGACTACTTGAAGA+TGG | + | Chr3:33014310-33014329 | MsG0380013213.01.T01:CDS | 30.0% | |
!! | GTCTTTTTCATTAGAGTTTG+AGG | - | Chr3:33014300-33014319 | None:intergenic | 30.0% |
!!! | GAAATTTTTTACTACAGGGT+TGG | - | Chr3:33014267-33014286 | None:intergenic | 30.0% |
ACGTTCTACTTCATTTACAG+AGG | - | Chr3:33014228-33014247 | None:intergenic | 35.0% | |
CGTTCTACTTCATTTACAGA+GGG | - | Chr3:33014227-33014246 | None:intergenic | 35.0% | |
GTAGAACGTTACTTCAAGAT+TGG | + | Chr3:33014239-33014258 | MsG0380013213.01.T01:CDS | 35.0% | |
! | AGACTACTTGAAGATGGATT+TGG | + | Chr3:33014316-33014335 | MsG0380013213.01.T01:CDS | 35.0% |
! | GCATGAGTTTTGCATAAGTT+AGG | - | Chr3:33014128-33014147 | None:intergenic | 35.0% |
ACTTCCCTTCTTGATGCACT+CGG | - | Chr3:33014150-33014169 | None:intergenic | 45.0% | |
AGTGCATCAAGAAGGGAAGT+GGG | + | Chr3:33014150-33014169 | MsG0380013213.01.T01:CDS | 45.0% | |
CATGCCGAGTGCATCAAGAA+GGG | + | Chr3:33014143-33014162 | MsG0380013213.01.T01:CDS | 50.0% | |
GAGTGCATCAAGAAGGGAAG+TGG | + | Chr3:33014149-33014168 | MsG0380013213.01.T01:CDS | 50.0% | |
TCATGCCGAGTGCATCAAGA+AGG | + | Chr3:33014142-33014161 | MsG0380013213.01.T01:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 33014104 | 33014352 | 33014104 | ID=MsG0380013213.01;Name=MsG0380013213.01 |
Chr3 | mRNA | 33014104 | 33014352 | 33014104 | ID=MsG0380013213.01.T01;Parent=MsG0380013213.01;Name=MsG0380013213.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|82 |
Chr3 | exon | 33014104 | 33014352 | 33014104 | ID=MsG0380013213.01.T01:exon:41791;Parent=MsG0380013213.01.T01 |
Chr3 | CDS | 33014104 | 33014352 | 33014104 | ID=MsG0380013213.01.T01:cds;Parent=MsG0380013213.01.T01 |
Gene Sequence |
Protein sequence |