AlfalfaGEDB | MsG0880044564.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044564.01

KEGG: K10418
GO: GO:0007017 GO:0030286
PFAM: PF01221

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044564.01.T01	XP_013445572.1	99.083	109	1	0	6	114	1	109	2.61E-73	223

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044564.01.T01	O96860	55.556	90	38	1	6	95	1	88	2.28E-29	104

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044564.01.T01	A0A072TRW8	99.083	109	1	0	6	114	1	109	1.25e-73	223

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048016.01	MsG0880044564.01	0.804443	2.154485e-49	1.110987e-46
MsG0080048802.01	MsG0880044564.01	0.818624	1.779086e-52	1.338486e-49
MsG0080049040.01	MsG0880044564.01	0.807030	6.167974e-50	3.399253e-47
MsG0080049068.01	MsG0880044564.01	0.820673	6.057605e-53	4.824060e-50
MsG0080049069.01	MsG0880044564.01	0.826965	2.030890e-54	1.933801e-51
MsG0180000246.01	MsG0880044564.01	0.840336	9.245371e-58	1.312691e-54
MsG0180001270.01	MsG0880044564.01	0.827221	1.763249e-54	1.691522e-51
MsG0180002700.01	MsG0880044564.01	0.816655	4.945295e-52	3.525103e-49
MsG0180004448.01	MsG0880044564.01	0.818979	1.477017e-52	1.122405e-49
MsG0180005184.01	MsG0880044564.01	0.807725	4.393736e-50	2.465579e-47

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PPI

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Gene1	Gene2	Type
MsG0880044564.01	MsG0680035693.01	PPI
MsG0880044564.01	MsG0680035693.01	PPI
MsG0880044564.01	MsG0880047062.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044564.01.T01	MTR_8g464690	99.083	109	1	0	6	114	1	109	3.16e-77	223
MsG0880044564.01.T01	MTR_6g087770	51.087	92	45	0	6	97	1	92	4.60e-30	103
MsG0880044564.01.T01	MTR_2g101850	55.556	90	40	0	6	95	1	90	1.46e-29	102
MsG0880044564.01.T01	MTR_4g120150	48.837	86	42	1	10	95	46	129	4.18e-26	94.7
MsG0880044564.01.T01	MTR_4g114060	49.367	79	40	0	16	94	159	237	6.72e-22	87.0
MsG0880044564.01.T01	MTR_8g104900	45.882	85	44	1	17	99	45	129	2.09e-19	77.8
MsG0880044564.01.T01	MTR_1g031880	39.796	98	56	2	5	99	46	143	3.68e-19	77.4
MsG0880044564.01.T01	MTR_4g107350	45.652	92	48	2	4	94	210	300	2.11e-18	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044564.01.T01	AT4G27360	71.845	103	29	0	6	108	1	103	1.79e-50	155
MsG0880044564.01.T01	AT3G16120	55.435	92	41	0	6	97	1	92	6.02e-33	110
MsG0880044564.01.T01	AT3G16120	55.435	92	41	0	6	97	1	92	6.02e-33	110
MsG0880044564.01.T01	AT1G52245	51.064	94	46	0	6	99	1	94	4.02e-30	103
MsG0880044564.01.T01	AT4G15930	49.412	85	41	1	10	94	39	121	4.34e-24	89.4
MsG0880044564.01.T01	AT5G20110	46.988	83	44	0	17	99	123	205	4.26e-21	84.0
MsG0880044564.01.T01	AT1G23220	39.773	88	52	1	13	99	38	125	4.68e-18	74.3
MsG0880044564.01.T01	AT4G15930	49.180	61	29	1	10	70	39	97	1.54e-13	61.6

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Find 23 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGTTCTCAGCAATAG+AGG	0.512873	8:-44582120	MsG0880044564.01.T01:CDS
AATTATTGCAGGAATTTGAT+AGG	0.302502	8:-44582286	MsG0880044564.01.T01:intron
AGATTTCTATGATGTAACTG+AGG	0.680263	8:-44582419	MsG0880044564.01.T01:CDS
AGTTACATCATAGAAATCTA+GGG	0.585718	8:+44582423	None:intergenic
ATAGGGTTCATGGACCTGGT+TGG	0.594187	8:-44582268	MsG0880044564.01.T01:CDS
ATCATAGAAATCTAGGGCTT+TGG	0.353606	8:+44582429	None:intergenic
ATCTGCTGGTCCACAAGCAG+AGG	0.571115	8:-44582144	MsG0880044564.01.T01:CDS
ATTATTGCAGGAATTTGATA+GGG	0.524356	8:-44582285	MsG0880044564.01.T01:intron
ATTCATCATGCTAGAAGGCA+AGG	0.581622	8:-44582512	MsG0880044564.01.T01:CDS
CAGGAATTTGATAGGGTTCA+TGG	0.298316	8:-44582278	MsG0880044564.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTTCTATGATGTAACTG+AGG	-	Chr8:44582207-44582226	MsG0880044564.01.T01:CDS	30.0%
CAGTTACATCATAGAAATCT+AGG	+	Chr8:44582207-44582226	None:intergenic	30.0%
AAATCAGTTCTCAGCAATAG+AGG	-	Chr8:44582506-44582525	MsG0880044564.01.T01:CDS	35.0%
CTTCAATTCATCATGCTAGA+AGG	-	Chr8:44582109-44582128	MsG0880044564.01.T01:CDS	35.0%
ATTCATCATGCTAGAAGGCA+AGG	-	Chr8:44582114-44582133	MsG0880044564.01.T01:CDS	40.0%
CAGGAATTTGATAGGGTTCA+TGG	-	Chr8:44582348-44582367	MsG0880044564.01.T01:intron	40.0%
TCCTTTGTGACACATTGTAG+TGG	-	Chr8:44582408-44582427	MsG0880044564.01.T01:CDS	40.0%
GCCACTACAATGTGTCACAA+AGG	+	Chr8:44582412-44582431	None:intergenic	45.0%
TTTGATAGGGTTCATGGACC+TGG	-	Chr8:44582354-44582373	MsG0880044564.01.T01:intron	45.0%
ATAGGGTTCATGGACCTGGT+TGG	-	Chr8:44582358-44582377	MsG0880044564.01.T01:intron	50.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	44582106	44582542	44582106	ID=MsG0880044564.01;Name=MsG0880044564.01
Chr8	mRNA	44582106	44582542	44582106	ID=MsG0880044564.01.T01;Parent=MsG0880044564.01;Name=MsG0880044564.01.T01;_AED=0.38;_eAED=0.39;_QI=0\|0\|0\|1\|1\|1\|2\|0\|114
Chr8	exon	44582390	44582542	44582390	ID=MsG0880044564.01.T01:exon:18036;Parent=MsG0880044564.01.T01
Chr8	exon	44582106	44582297	44582106	ID=MsG0880044564.01.T01:exon:18035;Parent=MsG0880044564.01.T01
Chr8	CDS	44582390	44582542	44582390	ID=MsG0880044564.01.T01:cds;Parent=MsG0880044564.01.T01
Chr8	CDS	44582106	44582297	44582106	ID=MsG0880044564.01.T01:cds;Parent=MsG0880044564.01.T01

Gene Sequence	>MsG0880044564.01.T01 TTGCTTCAATTCATCATGCTAGAAGGCAAGGCAGTGATTGGTGAGACCGATATGCTTCAAACTATGCAACAAGATGCTCTTGATTTAGCATCCAAAGCCCTAGATTTCTATGATGTAACTGAGGCCATTGATATAGCTCGATTTATAAAGAAGGAATTTGATAGGGTTCATGGACCTGGTTGGCAATGCATTGTAGGCACTGATTTTGGTTCCTTTGTGACACATTGTAGTGGCTGCTTCATCTATTTTTGTATAGGTAGTATGGCAATTTTGCTCTTTAAGGGATCTGCTGGTCCACAAGCAGAGGAAAATCAGTTCTCAGCAATAGAGGCAACTAAAGCATAA
Protein sequence	>MsG0880044564.01.T01 LLQFIMLEGKAVIGETDMLQTMQQDALDLASKALDFYDVTEAIDIARFIKKEFDRVHGPGWQCIVGTDFGSFVTHCSGCFIYFCIGSMAILLFKGSAGPQAEENQFSAIEATKA*