AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030464.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030464.01.T01 MTR_6g007180 98.667 300 2 1 1 298 1 300 0.0 614
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030464.01.T01 AT3G55250 54.333 300 106 6 1 296 2 274 6.23e-107 312

Find 73 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 6:+3266721 None:intergenic
CTATTGAAACTTGGGGTTAT+AGG 0.185859 6:-3263125 MsG0680030464.01.T01:three_prime_UTR
TCTCAAAACTGAGGAGATTT+TGG 0.193705 6:-3264617 MsG0680030464.01.T01:CDS
AGCAAGGTGTTTGAGCCTTT+TGG 0.241652 6:-3263214 MsG0680030464.01.T01:three_prime_UTR
ACAACATTTGAAAATGAGTT+TGG 0.277068 6:+3266698 None:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 6:+3263219 None:intergenic
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 6:-3266683 MsG0680030464.01.T01:CDS
GCTATCTACGTTTGTTGCTT+TGG 0.302517 6:-3263526 MsG0680030464.01.T01:CDS
CAAATGTAATTTATTTGTTA+AGG 0.316242 6:-3263065 MsG0680030464.01.T01:three_prime_UTR
CTGATATCCCTATTGAAACT+TGG 0.346656 6:-3263134 MsG0680030464.01.T01:three_prime_UTR
CTATAACCCCAAGTTTCAAT+AGG 0.371902 6:+3263126 None:intergenic
TCTATGTTCTGCTATGTTGT+TGG 0.373569 6:-3264663 MsG0680030464.01.T01:CDS
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 6:-3266665 MsG0680030464.01.T01:CDS
TGAAGATGGTGATGTGAGTT+TGG 0.383881 6:+3266823 None:intergenic
TAGAGAAGGGCGAGACAAAA+AGG 0.400248 6:-3263598 MsG0680030464.01.T01:CDS
TTGACATATAATGCATTGAA+TGG 0.403493 6:-3263252 MsG0680030464.01.T01:three_prime_UTR
TTGTGTGTAGGCAGGGGATC+AGG 0.405750 6:-3264698 MsG0680030464.01.T01:intron
TCAACAGCTTCCTTTGATAG+AGG 0.406723 6:+3263346 None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 6:+3263496 None:intergenic
GATAGAGGCTTAGCAGCATC+TGG 0.416100 6:+3263361 None:intergenic
GAAAGTAGAAGATGGAGGTA+TGG 0.423409 6:-3263392 MsG0680030464.01.T01:CDS
TGATATCCCTATTGAAACTT+GGG 0.423726 6:-3263133 MsG0680030464.01.T01:three_prime_UTR
TTTAATGGTGAAATTTGTAG+TGG 0.432350 6:+3266736 None:intergenic
GTGTAGGCAGGGGATCAGGC+AGG 0.442076 6:-3264694 MsG0680030464.01.T01:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 6:+3264667 None:intergenic
TTCTCAACTCGAACTTCCAT+TGG 0.445634 6:+3263559 None:intergenic
AGGTTGAAGAATTGTGAATA+TGG 0.458125 6:+3266857 None:intergenic
TTTCACCATTAAAGCTTACA+TGG 0.460009 6:-3266726 MsG0680030464.01.T01:CDS
TGTTGTTGGCTGGCAGCGAT+TGG 0.471449 6:-3264649 MsG0680030464.01.T01:CDS
GCTAGGATTATGAGTGATGA+AGG 0.474789 6:-3266635 MsG0680030464.01.T01:CDS
TGGCTGGCAGCGATTGGTGC+AGG 0.478239 6:-3264643 MsG0680030464.01.T01:CDS
TGTTCTGCTATGTTGTTGGC+TGG 0.484254 6:-3264659 MsG0680030464.01.T01:CDS
CTACGTTTGTTGCTTTGGAA+AGG 0.494595 6:-3263521 MsG0680030464.01.T01:CDS
TTTGGATACTCATAGTCATA+GGG 0.499800 6:-3263196 MsG0680030464.01.T01:three_prime_UTR
GATGAACATGGTGGTGGCTG+TGG 0.501553 6:+3266786 None:intergenic
TATAACCCCAAGTTTCAATA+GGG 0.502810 6:+3263127 None:intergenic
TGCACCTCCCGCTGTTCCAA+TGG 0.503183 6:-3263575 MsG0680030464.01.T01:CDS
CTCTCTTGCTTCATCCATCA+TGG 0.504937 6:+3264534 None:intergenic
ATGAGTGATGAAGGTGGTGT+TGG 0.509665 6:-3266626 MsG0680030464.01.T01:CDS
ATGGCAGAGAAAGTAGAAGA+TGG 0.510938 6:-3263400 MsG0680030464.01.T01:CDS
CTAGCTAAAAGACCAACAAC+AGG 0.516749 6:+3266653 None:intergenic
CGAACTTCCATTGGAACAGC+GGG 0.522801 6:+3263568 None:intergenic
TGTAGGCAGGGGATCAGGCA+GGG 0.522813 6:-3264693 MsG0680030464.01.T01:intron
GTTTGAAAGTACCATGTTTG+TGG 0.523489 6:+3266907 None:intergenic
TGGAAGGAGTTGGAAGACTT+CGG 0.523913 6:-3264597 MsG0680030464.01.T01:CDS
GCTGAGTTTAGAAGAAGGGT+TGG 0.525341 6:-3266584 MsG0680030464.01.T01:CDS
TTTGGTGATGAACATGGTGG+TGG 0.527219 6:+3266780 None:intergenic
GTAGGCAGGGGATCAGGCAG+GGG 0.527962 6:-3264692 MsG0680030464.01.T01:intron
TATCAGTTTCAAGCAAGAAG+AGG 0.555632 6:-3266527 MsG0680030464.01.T01:CDS
GCAGAGAAAGTAGAAGATGG+AGG 0.556536 6:-3263397 MsG0680030464.01.T01:CDS
TATGACTATGAGTATCCAAA+AGG 0.559102 6:+3263199 None:intergenic
CCGACGCATGGTTAAAGAGA+TGG 0.562583 6:-3263419 MsG0680030464.01.T01:CDS
AGTTTCAAGCAAGAAGAGGA+AGG 0.571685 6:-3266523 MsG0680030464.01.T01:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 6:-3263356 MsG0680030464.01.T01:CDS
TCGAACTTCCATTGGAACAG+CGG 0.575066 6:+3263567 None:intergenic
AATGGAAGTTCGAGTTGAGA+AGG 0.575263 6:-3263557 MsG0680030464.01.T01:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 6:-3263230 MsG0680030464.01.T01:three_prime_UTR
TTAATGGTGAAATTTGTAGT+GGG 0.585415 6:+3266737 None:intergenic
ACAGACTTTCATAGCCATGA+TGG 0.596549 6:-3264548 MsG0680030464.01.T01:CDS
GTTTCAAGCAAGAAGAGGAA+GGG 0.598303 6:-3266522 MsG0680030464.01.T01:intron
CCATCTCTTTAACCATGCGT+CGG 0.598906 6:+3263419 None:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 6:-3264533 MsG0680030464.01.T01:intron
CTATAGAGACAGAAGATGAG+AGG 0.617615 6:-3263495 MsG0680030464.01.T01:CDS
ACTTCCATTGGAACAGCGGG+AGG 0.620788 6:+3263571 None:intergenic
GATATCCCTATTGAAACTTG+GGG 0.627744 6:-3263132 MsG0680030464.01.T01:three_prime_UTR
TTGGATACTCATAGTCATAG+GGG 0.631006 6:-3263195 MsG0680030464.01.T01:three_prime_UTR
TGAGTTTGGAGAATGATGAG+AGG 0.632202 6:+3266837 None:intergenic
AAGAGAAGTGACGATGAAGA+TGG 0.633106 6:+3266809 None:intergenic
AAAACAAGAGATCCGACGCA+TGG 0.634308 6:-3263431 MsG0680030464.01.T01:CDS
TTGTTTGGTGATGAACATGG+TGG 0.668676 6:+3266777 None:intergenic
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 6:-3264626 MsG0680030464.01.T01:CDS
AAGATGATGATGATGAAGTG+AGG 0.682559 6:+3266885 None:intergenic
AGGATTATGAGTGATGAAGG+TGG 0.737229 6:-3266632 MsG0680030464.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAGATATTTTTATAACAA+AGG + Chr6:3266257-3266276 None:intergenic 10.0%
!!! TTTATTTTAATCTACTTTTA+GGG + Chr6:3265677-3265696 None:intergenic 10.0%
!! AAAATGCAAAATTTAATGAA+CGG + Chr6:3263490-3263509 None:intergenic 15.0%
!! ATTACCTTAATAAAACTATA+AGG + Chr6:3263580-3263599 None:intergenic 15.0%
!! CTAAAAGTAGATTAAAATAA+AGG - Chr6:3265676-3265695 MsG0680030464.01.T01:intron 15.0%
!! GATTTAAATATACTTAAACA+AGG - Chr6:3264948-3264967 MsG0680030464.01.T01:intron 15.0%
!!! CAAATGTAATTTATTTGTTA+AGG - Chr6:3266899-3266918 MsG0680030464.01.T01:CDS 15.0%
!!! CTTTATTTTAATCTACTTTT+AGG + Chr6:3265678-3265697 None:intergenic 15.0%
!!! TCATTAAATTTTGCATTTTT+TGG - Chr6:3263491-3263510 MsG0680030464.01.T01:CDS 15.0%
!! AAATATAAACCATAATCAAC+AGG + Chr6:3264017-3264036 None:intergenic 20.0%
!! AATCAATTAAAAGGTTACAA+AGG + Chr6:3264441-3264460 None:intergenic 20.0%
!! AATCTATTGCAAGAATAAAA+AGG + Chr6:3265165-3265184 None:intergenic 20.0%
!! AATGTAAAGTGAATTATGTT+TGG - Chr6:3263707-3263726 MsG0680030464.01.T01:intron 20.0%
!! CAATTGTAGAAATTGAATAA+GGG + Chr6:3264823-3264842 None:intergenic 20.0%
!! TAACCAAATATAATCGAATT+GGG - Chr6:3264564-3264583 MsG0680030464.01.T01:CDS 20.0%
!! TATAGTTAAACACATAAATG+AGG - Chr6:3264392-3264411 MsG0680030464.01.T01:intron 20.0%
!!! ATTAAGGTAATTTTGCATTT+TGG - Chr6:3263589-3263608 MsG0680030464.01.T01:CDS 20.0%
!!! GTAACCTTATAGTTTTATTA+AGG - Chr6:3263573-3263592 MsG0680030464.01.T01:CDS 20.0%
!!! TACACTTACAAAATCAATTT+TGG - Chr6:3263881-3263900 MsG0680030464.01.T01:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG - Chr6:3265620-3265639 MsG0680030464.01.T01:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG + Chr6:3266659-3266678 None:intergenic 20.0%
!!! TGATTTTGTAAAATTGATTC+AGG - Chr6:3263670-3263689 MsG0680030464.01.T01:intron 20.0%
!!! TGTAACCTTTTAATTGATTA+AGG - Chr6:3264442-3264461 MsG0680030464.01.T01:intron 20.0%
!!! TTAAGGTAATTTTGCATTTT+GGG - Chr6:3263590-3263609 MsG0680030464.01.T01:CDS 20.0%
!!! TTATCTTCTTACTTTAGAAT+CGG - Chr6:3264177-3264196 MsG0680030464.01.T01:intron 20.0%
!!! TTGTGTTTTTAACAAAACTA+AGG + Chr6:3265579-3265598 None:intergenic 20.0%
!!! TTTTTACAGTTCAATTTATG+AGG - Chr6:3264248-3264267 MsG0680030464.01.T01:intron 20.0%
! AAAAAACAAAACCACAAACA+TGG - Chr6:3263046-3263065 MsG0680030464.01.T01:three_prime_UTR 25.0%
! AAATATAATCGAATTGGGTT+GGG - Chr6:3264569-3264588 MsG0680030464.01.T01:CDS 25.0%
! AAATTGAATAAGGGAAGAAA+TGG + Chr6:3264814-3264833 None:intergenic 25.0%
! AAGATGCAAAATTAGATCAT+AGG + Chr6:3264917-3264936 None:intergenic 25.0%
! AAGATTCATATTTGATTGTG+GGG + Chr6:3265039-3265058 None:intergenic 25.0%
! AATATGGTGAAAACAGATTA+CGG + Chr6:3266163-3266182 None:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG - Chr6:3263281-3263300 MsG0680030464.01.T01:exon 25.0%
! ACAACATTTGAAAATGAGTT+TGG + Chr6:3263269-3263288 None:intergenic 25.0%
! ACTTATCATATAAGTGCTTA+TGG + Chr6:3266280-3266299 None:intergenic 25.0%
! AGATGCAAAATTAGATCATA+GGG + Chr6:3264916-3264935 None:intergenic 25.0%
! ATAGTACAGTTCAGAAATAT+AGG - Chr6:3264109-3264128 MsG0680030464.01.T01:intron 25.0%
! ATGTAGATTATTCTAACAAC+TGG - Chr6:3266323-3266342 MsG0680030464.01.T01:intron 25.0%
! ATTAACCTTCATTCATTGTA+AGG + Chr6:3265128-3265147 None:intergenic 25.0%
! CAAGATTCATATTTGATTGT+GGG + Chr6:3265040-3265059 None:intergenic 25.0%
! CCAATTGTAGAAATTGAATA+AGG + Chr6:3264824-3264843 None:intergenic 25.0%
! CCTTATTCAATTTCTACAAT+TGG - Chr6:3264821-3264840 MsG0680030464.01.T01:intron 25.0%
! GAATTATATTTCCTAAAGCA+AGG - Chr6:3266734-3266753 MsG0680030464.01.T01:CDS 25.0%
! GCAAACCTTAATCAATTAAA+AGG + Chr6:3264450-3264469 None:intergenic 25.0%
! GTAACCAAATATAATCGAAT+TGG - Chr6:3264563-3264582 MsG0680030464.01.T01:CDS 25.0%
! GTAACCTTATAATTGGATTA+AGG - Chr6:3264309-3264328 MsG0680030464.01.T01:intron 25.0%
! TAGGAAAATTCATTACGATT+GGG + Chr6:3265928-3265947 None:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG + Chr6:3263230-3263249 None:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG - Chr6:3265206-3265225 MsG0680030464.01.T01:intron 25.0%
! TTGACATATAATGCATTGAA+TGG - Chr6:3266712-3266731 MsG0680030464.01.T01:CDS 25.0%
! TTGATTAAGGTTTGCATATA+TGG - Chr6:3264455-3264474 MsG0680030464.01.T01:intron 25.0%
! TTTAATGGTGAAATTTGTAG+TGG + Chr6:3263231-3263250 None:intergenic 25.0%
!! ATATTTCTGAACTGTACTAT+GGG + Chr6:3264109-3264128 None:intergenic 25.0%
!! CAACTTGATAGATTTAGAAT+CGG - Chr6:3265996-3266015 MsG0680030464.01.T01:intron 25.0%
!! GCAATTTTCATTATACGAAA+TGG + Chr6:3265964-3265983 None:intergenic 25.0%
!! TATATTTCTGAACTGTACTA+TGG + Chr6:3264110-3264129 None:intergenic 25.0%
!! TATTCTTGCAATAGATTTTG+TGG - Chr6:3265168-3265187 MsG0680030464.01.T01:intron 25.0%
!!! AGTATTTTTTTTGACTTGTG+AGG - Chr6:3263522-3263541 MsG0680030464.01.T01:CDS 25.0%
!!! TTGAAGTTTGTTGTTTTGTT+TGG + Chr6:3263205-3263224 None:intergenic 25.0%
!!! TTTACTCAGTTTTAGTATCA+TGG - Chr6:3265475-3265494 MsG0680030464.01.T01:intron 25.0%
!!! TTTCTATAGTTTTGCATGTT+TGG - Chr6:3263614-3263633 MsG0680030464.01.T01:intron 25.0%
!!! TTTTGGAGCTTGAAATTTTA+AGG + Chr6:3265758-3265777 None:intergenic 25.0%
AAAACAGAAAACATGTTGGA+AGG + Chr6:3264522-3264541 None:intergenic 30.0%
AAATGCAAAACTTGATCATG+GGG + Chr6:3264367-3264386 None:intergenic 30.0%
AAATGGATGAAACTGTATCT+AGG + Chr6:3265947-3265966 None:intergenic 30.0%
AATAGGAATGGTCTAAAGAT+TGG - Chr6:3265885-3265904 MsG0680030464.01.T01:intron 30.0%
AATGAACGGTTATGAACAAA+AGG + Chr6:3263476-3263495 None:intergenic 30.0%
AATTAGTGTAAACTTAGTCC+AGG - Chr6:3265711-3265730 MsG0680030464.01.T01:intron 30.0%
ACCTTGATCTGACAAAATTA+AGG + Chr6:3263965-3263984 None:intergenic 30.0%
ACTGTGTGTAACCTTATAAT+TGG - Chr6:3264302-3264321 MsG0680030464.01.T01:intron 30.0%
AGGTTGAAGAATTGTGAATA+TGG + Chr6:3263110-3263129 None:intergenic 30.0%
AGTGACTTGAGTAACAAATT+TGG - Chr6:3263745-3263764 MsG0680030464.01.T01:intron 30.0%
ATAAACCATAATCAACAGGA+TGG + Chr6:3264013-3264032 None:intergenic 30.0%
ATAGGAATGGTCTAAAGATT+GGG - Chr6:3265886-3265905 MsG0680030464.01.T01:intron 30.0%
ATCGTGTCGAATATCAATTA+TGG - Chr6:3265779-3265798 MsG0680030464.01.T01:intron 30.0%
ATGTGCTAAAATAGAAATGG+AGG - Chr6:3265209-3265228 MsG0680030464.01.T01:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG - Chr6:3266353-3266372 MsG0680030464.01.T01:intron 30.0%
ATTACGATTGGGATTAATCA+AGG + Chr6:3265917-3265936 None:intergenic 30.0%
CAAATATAATCGAATTGGGT+TGG - Chr6:3264568-3264587 MsG0680030464.01.T01:CDS 30.0%
CAAATGCAAAACTTGATCAT+GGG + Chr6:3264368-3264387 None:intergenic 30.0%
CAACCCAATTCGATTATATT+TGG + Chr6:3264570-3264589 None:intergenic 30.0%
CACTGCTTTCAAATTCTTAA+CGG - Chr6:3264869-3264888 MsG0680030464.01.T01:intron 30.0%
CCAACCTTAATCCAATTATA+AGG + Chr6:3264316-3264335 None:intergenic 30.0%
CCAAGATTCATATTTGATTG+TGG + Chr6:3265041-3265060 None:intergenic 30.0%
CCACAATCAAATATGAATCT+TGG - Chr6:3265038-3265057 MsG0680030464.01.T01:intron 30.0%
CCTTATAATTGGATTAAGGT+TGG - Chr6:3264313-3264332 MsG0680030464.01.T01:intron 30.0%
CCTTGATCTGACAAAATTAA+GGG + Chr6:3263964-3263983 None:intergenic 30.0%
CTAGGAAAATTCATTACGAT+TGG + Chr6:3265929-3265948 None:intergenic 30.0%
CTTGATCTGACAAAATTAAG+GGG + Chr6:3263963-3263982 None:intergenic 30.0%
GATGTTCATCTGTAACTAAT+AGG - Chr6:3265868-3265887 MsG0680030464.01.T01:intron 30.0%
GTCGAATATCAATTATGGAT+CGG - Chr6:3265784-3265803 MsG0680030464.01.T01:intron 30.0%
GTGACTTGAGTAACAAATTT+GGG - Chr6:3263746-3263765 MsG0680030464.01.T01:intron 30.0%
TATAACCCCAAGTTTCAATA+GGG + Chr6:3266840-3266859 None:intergenic 30.0%
TATCAACTAGCATCAAGTTA+TGG + Chr6:3264607-3264626 None:intergenic 30.0%
TATGACTATGAGTATCCAAA+AGG + Chr6:3266768-3266787 None:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG - Chr6:3266352-3266371 MsG0680030464.01.T01:intron 30.0%
TCAAATAAGTCAATCCTAAC+AGG + Chr6:3266066-3266085 None:intergenic 30.0%
TCATCTGTAACTAATAGGAA+TGG - Chr6:3265873-3265892 MsG0680030464.01.T01:intron 30.0%
TGATATCCCTATTGAAACTT+GGG - Chr6:3266831-3266850 MsG0680030464.01.T01:CDS 30.0%
TGATTATGCCTAAAGATGTA+AGG - Chr6:3264481-3264500 MsG0680030464.01.T01:intron 30.0%
TGTCAAAACAGAAAACATGT+TGG + Chr6:3264526-3264545 None:intergenic 30.0%
TGTTTGTGTACATTCTTACT+TGG - Chr6:3265534-3265553 MsG0680030464.01.T01:intron 30.0%
TTAGTTACAGATGAACATCT+TGG + Chr6:3265867-3265886 None:intergenic 30.0%
TTCAGAAATATAGGCACAAT+CGG - Chr6:3264118-3264137 MsG0680030464.01.T01:intron 30.0%
TTTCACCATTAAAGCTTACA+TGG - Chr6:3263238-3263257 MsG0680030464.01.T01:three_prime_UTR 30.0%
TTTGGATACTCATAGTCATA+GGG - Chr6:3266768-3266787 MsG0680030464.01.T01:CDS 30.0%
! AGAATTGATTCAAGCATGTT+TGG + Chr6:3263862-3263881 None:intergenic 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG + Chr6:3263246-3263265 None:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG - Chr6:3263375-3263394 MsG0680030464.01.T01:CDS 30.0%
! CAAGTAGAATCAATTTTGGA+GGG - Chr6:3263812-3263831 MsG0680030464.01.T01:intron 30.0%
! GCTTCAAGTAGAATCAATTT+TGG - Chr6:3263808-3263827 MsG0680030464.01.T01:intron 30.0%
! TAATTTTGTCAGATCAAGGT+TGG - Chr6:3263965-3263984 MsG0680030464.01.T01:intron 30.0%
! TATTTCTGAACTGTACTATG+GGG + Chr6:3264108-3264127 None:intergenic 30.0%
! TCAAGTAGAATCAATTTTGG+AGG - Chr6:3263811-3263830 MsG0680030464.01.T01:intron 30.0%
! TGATATTCGACACGATATTT+TGG + Chr6:3265775-3265794 None:intergenic 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG - Chr6:3263376-3263395 MsG0680030464.01.T01:CDS 30.0%
! TTTTGGATACTCATAGTCAT+AGG - Chr6:3266767-3266786 MsG0680030464.01.T01:CDS 30.0%
!!! AAAACGAGACTATTTTTTCC+TGG + Chr6:3265732-3265751 None:intergenic 30.0%
!!! ATCTCTTGTTTTTGAACTGA+TGG + Chr6:3266525-3266544 None:intergenic 30.0%
!!! TTTTCTGTTTTGACAGTTAG+CGG - Chr6:3264531-3264550 MsG0680030464.01.T01:intron 30.0%
AACAAAGGAATGGGATACAA+AGG + Chr6:3264049-3264068 None:intergenic 35.0%
ACAAAGGAATGGGATACAAA+GGG + Chr6:3264048-3264067 None:intergenic 35.0%
AGAAATTGAGTGAGCATTAG+AGG - Chr6:3264662-3264681 MsG0680030464.01.T01:CDS 35.0%
ATAAGGGAAGAAATGGAAAG+AGG + Chr6:3264807-3264826 None:intergenic 35.0%
ATTCATATTTGATTGTGGGG+TGG + Chr6:3265036-3265055 None:intergenic 35.0%
ATTGGATTAAGGTTGGCATT+AGG - Chr6:3264320-3264339 MsG0680030464.01.T01:intron 35.0%
CAACATAGCAGAACATAGAT+AGG + Chr6:3265300-3265319 None:intergenic 35.0%
CCAAATGCAAAACTTGATCA+TGG + Chr6:3264369-3264388 None:intergenic 35.0%
CCTAACCTTACAATGAATGA+AGG - Chr6:3265120-3265139 MsG0680030464.01.T01:intron 35.0%
CCTTCATTCATTGTAAGGTT+AGG + Chr6:3265123-3265142 None:intergenic 35.0%
CGGCACATTTACAAAATTCA+AGG - Chr6:3265804-3265823 MsG0680030464.01.T01:intron 35.0%
CTATAACCCCAAGTTTCAAT+AGG + Chr6:3266841-3266860 None:intergenic 35.0%
CTATTGAAACTTGGGGTTAT+AGG - Chr6:3266839-3266858 MsG0680030464.01.T01:CDS 35.0%
CTGATATCCCTATTGAAACT+TGG - Chr6:3266830-3266849 MsG0680030464.01.T01:CDS 35.0%
GAAATTGAGTGAGCATTAGA+GGG - Chr6:3264663-3264682 MsG0680030464.01.T01:CDS 35.0%
GAAGAACGCAAGATTTATCA+AGG + Chr6:3264785-3264804 None:intergenic 35.0%
GATAGAACTTTGAGCATGAA+TGG + Chr6:3263933-3263952 None:intergenic 35.0%
GATATCCCTATTGAAACTTG+GGG - Chr6:3266832-3266851 MsG0680030464.01.T01:CDS 35.0%
GCAAAATTAGATCATAGGGT+GGG + Chr6:3264912-3264931 None:intergenic 35.0%
GTATGAATGTGTGTCTAACT+TGG - Chr6:3265233-3265252 MsG0680030464.01.T01:intron 35.0%
TATCAGTTTCAAGCAAGAAG+AGG - Chr6:3263437-3263456 MsG0680030464.01.T01:CDS 35.0%
TCTATGTTCTGCTATGTTGT+TGG - Chr6:3265301-3265320 MsG0680030464.01.T01:intron 35.0%
TGCAAAATTAGATCATAGGG+TGG + Chr6:3264913-3264932 None:intergenic 35.0%
TTGAAAGCAGTGATGAAAAC+TGG + Chr6:3264861-3264880 None:intergenic 35.0%
TTGGATACTCATAGTCATAG+GGG - Chr6:3266769-3266788 MsG0680030464.01.T01:CDS 35.0%
TTGTATCCCATTCCTTTGTT+GGG - Chr6:3264049-3264068 MsG0680030464.01.T01:intron 35.0%
TTTGTATCCCATTCCTTTGT+TGG - Chr6:3264048-3264067 MsG0680030464.01.T01:intron 35.0%
! AAAACTGAGGAGATTTTGGA+AGG - Chr6:3265351-3265370 MsG0680030464.01.T01:intron 35.0%
! AAGATGATGATGATGAAGTG+AGG + Chr6:3263082-3263101 None:intergenic 35.0%
! CACAATAGCCTTACATCTTT+AGG + Chr6:3264492-3264511 None:intergenic 35.0%
! CCATGATCAAGTTTTGCATT+TGG - Chr6:3264366-3264385 MsG0680030464.01.T01:intron 35.0%
! CCCTTAATTTTGTCAGATCA+AGG - Chr6:3263961-3263980 MsG0680030464.01.T01:intron 35.0%
! TCTCAAAACTGAGGAGATTT+TGG - Chr6:3265347-3265366 MsG0680030464.01.T01:intron 35.0%
!! GGTGTTAATTTGTTGTGTGT+AGG - Chr6:3265254-3265273 MsG0680030464.01.T01:intron 35.0%
!! GTTTGAAAGTACCATGTTTG+TGG + Chr6:3263060-3263079 None:intergenic 35.0%
!! TAATTTGTTGTGTGTAGGCA+GGG - Chr6:3265259-3265278 MsG0680030464.01.T01:intron 35.0%
!! TTAATTTGTTGTGTGTAGGC+AGG - Chr6:3265258-3265277 MsG0680030464.01.T01:intron 35.0%
!!! GTTTTGTTTGGTGATGAACA+TGG + Chr6:3263193-3263212 None:intergenic 35.0%
AAATTAGATCATAGGGTGGG+AGG + Chr6:3264909-3264928 None:intergenic 40.0%
AAGAGAAGTGACGATGAAGA+TGG + Chr6:3263158-3263177 None:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG - Chr6:3265836-3265855 MsG0680030464.01.T01:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG - Chr6:3265416-3265435 MsG0680030464.01.T01:intron 40.0%
AGCTGCAAAATTTGATCACG+GGG + Chr6:3264221-3264240 None:intergenic 40.0%
AGGATTATGAGTGATGAAGG+TGG - Chr6:3263332-3263351 MsG0680030464.01.T01:CDS 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG - Chr6:3263441-3263460 MsG0680030464.01.T01:CDS 40.0%
ATCGTAACCCAACAAAGGAA+TGG + Chr6:3264059-3264078 None:intergenic 40.0%
ATGGCAGAGAAAGTAGAAGA+TGG - Chr6:3266564-3266583 MsG0680030464.01.T01:CDS 40.0%
CGAGCTGCAAAATTTGATCA+CGG + Chr6:3264223-3264242 None:intergenic 40.0%
CTAGCGAGCTTACGAAAATA+TGG + Chr6:3266179-3266198 None:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG + Chr6:3263314-3263333 None:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG - Chr6:3266469-3266488 MsG0680030464.01.T01:intron 40.0%
CTCTCATCTTCTGTCTCTAT+AGG + Chr6:3266471-3266490 None:intergenic 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG + Chr6:3265464-3265483 None:intergenic 40.0%
GAAAGTAGAAGATGGAGGTA+TGG - Chr6:3266572-3266591 MsG0680030464.01.T01:CDS 40.0%
GAGCTGCAAAATTTGATCAC+GGG + Chr6:3264222-3264241 None:intergenic 40.0%
GCTAGGATTATGAGTGATGA+AGG - Chr6:3263329-3263348 MsG0680030464.01.T01:CDS 40.0%
GGGATATCTGTCATACATCT+TGG + Chr6:3266032-3266051 None:intergenic 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG - Chr6:3263442-3263461 MsG0680030464.01.T01:CDS 40.0%
TCAACAGCTTCCTTTGATAG+AGG + Chr6:3266621-3266640 None:intergenic 40.0%
TCCTAATCGTAACCCAACAA+AGG + Chr6:3264064-3264083 None:intergenic 40.0%
TCCTTTGTTGGGTTACGATT+AGG - Chr6:3264060-3264079 MsG0680030464.01.T01:intron 40.0%
TCGTAACCCAACAAAGGAAT+GGG + Chr6:3264058-3264077 None:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG + Chr6:3263130-3263149 None:intergenic 40.0%
TTCTCAACTCGAACTTCCAT+TGG + Chr6:3266408-3266427 None:intergenic 40.0%
TTCTTGCAACACTGCGAAAT+TGG - Chr6:3264705-3264724 MsG0680030464.01.T01:intron 40.0%
TTGTTGGGTTACGATTAGGA+GGG - Chr6:3264064-3264083 MsG0680030464.01.T01:intron 40.0%
TTTGTTGGGTTACGATTAGG+AGG - Chr6:3264063-3264082 MsG0680030464.01.T01:intron 40.0%
! CATATTTTCGTAAGCTCGCT+AGG - Chr6:3266177-3266196 MsG0680030464.01.T01:intron 40.0%
! GCTATCTACGTTTGTTGCTT+TGG - Chr6:3266438-3266457 MsG0680030464.01.T01:intron 40.0%
! TGAAGATGGTGATGTGAGTT+TGG + Chr6:3263144-3263163 None:intergenic 40.0%
!! AATGGAAGTTCGAGTTGAGA+AGG - Chr6:3266407-3266426 MsG0680030464.01.T01:intron 40.0%
!! AATTTGTTGTGTGTAGGCAG+GGG - Chr6:3265260-3265279 MsG0680030464.01.T01:intron 40.0%
!! ATTGGGTTGGGTAGCAATAT+AGG - Chr6:3264581-3264600 MsG0680030464.01.T01:CDS 40.0%
!! CTACGTTTGTTGCTTTGGAA+AGG - Chr6:3266443-3266462 MsG0680030464.01.T01:intron 40.0%
!! GGTTGGTACTTGACTTTTTG+AGG + Chr6:3265832-3265851 None:intergenic 40.0%
!! TTGTTTGGTGATGAACATGG+TGG + Chr6:3263190-3263209 None:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG - Chr6:3263312-3263331 MsG0680030464.01.T01:CDS 40.0%
AAAACAAGAGATCCGACGCA+TGG - Chr6:3266533-3266552 MsG0680030464.01.T01:CDS 45.0%
AAGGAATGGGATACAAAGGG+TGG + Chr6:3264045-3264064 None:intergenic 45.0%
AGGCTCAAACACCTTGCTTT+AGG + Chr6:3266748-3266767 None:intergenic 45.0%
ATGAGTGATGAAGGTGGTGT+TGG - Chr6:3263338-3263357 MsG0680030464.01.T01:CDS 45.0%
ATGGATGAAGCAAGAGAGGT+TGG - Chr6:3265435-3265454 MsG0680030464.01.T01:intron 45.0%
CCATCTCTTTAACCATGCGT+CGG + Chr6:3266548-3266567 None:intergenic 45.0%
CTCTCTTGCTTCATCCATCA+TGG + Chr6:3265433-3265452 None:intergenic 45.0%
GACAGATATCCCTGCTCTTT+CGG - Chr6:3266040-3266059 MsG0680030464.01.T01:intron 45.0%
GCAGAGAAAGTAGAAGATGG+AGG - Chr6:3266567-3266586 MsG0680030464.01.T01:CDS 45.0%
GCTATAGTCAGTAAGACTGC+AGG - Chr6:3264743-3264762 MsG0680030464.01.T01:intron 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG - Chr6:3263380-3263399 MsG0680030464.01.T01:CDS 45.0%
GGTTACGATTAGGAGGGTTA+AGG - Chr6:3264070-3264089 MsG0680030464.01.T01:intron 45.0%
TAGAGAAGGGCGAGACAAAA+AGG - Chr6:3266366-3266385 MsG0680030464.01.T01:intron 45.0%
TCAAGCATGTTTGGTTGCTC+TGG + Chr6:3263853-3263872 None:intergenic 45.0%
TCGAACTTCCATTGGAACAG+CGG + Chr6:3266400-3266419 None:intergenic 45.0%
TGAGCATGAATGGAGTCAAC+CGG + Chr6:3263923-3263942 None:intergenic 45.0%
TGCAGGTCTTCTCAAAACTG+AGG - Chr6:3265338-3265357 MsG0680030464.01.T01:intron 45.0%
TGCTGCTAAGCCTCTATCAA+AGG - Chr6:3266608-3266627 MsG0680030464.01.T01:CDS 45.0%
TGGAAGGAGTTGGAAGACTT+CGG - Chr6:3265367-3265386 MsG0680030464.01.T01:intron 45.0%
TGTTCTGCTATGTTGTTGGC+TGG - Chr6:3265305-3265324 MsG0680030464.01.T01:intron 45.0%
! AGCTGCCATCCTGTTGATTA+TGG - Chr6:3264005-3264024 MsG0680030464.01.T01:intron 45.0%
! ATTGGTGCTCTTCCTGTTGT+TGG - Chr6:3263299-3263318 MsG0680030464.01.T01:CDS 45.0%
!! ACACTGTTCTAGAGAACGCA+TGG - Chr6:3266119-3266138 MsG0680030464.01.T01:intron 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG - Chr6:3266750-3266769 MsG0680030464.01.T01:CDS 45.0%
!! CATGATGGATGAAGCAAGAG+AGG - Chr6:3265431-3265450 MsG0680030464.01.T01:intron 45.0%
!! GAGGAGATTTTGGAAGGAGT+TGG - Chr6:3265357-3265376 MsG0680030464.01.T01:intron 45.0%
!! TAGAGGGATCTCTAGAACTG+AGG - Chr6:3264679-3264698 MsG0680030464.01.T01:CDS 45.0%
!! TCAACCGGCTTGCTTTCATA+GGG + Chr6:3263908-3263927 None:intergenic 45.0%
!! TTTGGTGATGAACATGGTGG+TGG + Chr6:3263187-3263206 None:intergenic 45.0%
ACATCTTGGCTGTGCCAACA+TGG + Chr6:3265853-3265872 None:intergenic 50.0%
ATTAGGAGGGTTAAGGTGCG+GGG - Chr6:3264077-3264096 MsG0680030464.01.T01:intron 50.0%
CCGACGCATGGTTAAAGAGA+TGG - Chr6:3266545-3266564 MsG0680030464.01.T01:CDS 50.0%
CGAACTTCCATTGGAACAGC+GGG + Chr6:3266399-3266418 None:intergenic 50.0%
CGATTAGGAGGGTTAAGGTG+CGG - Chr6:3264075-3264094 MsG0680030464.01.T01:intron 50.0%
GATAGAGGCTTAGCAGCATC+TGG + Chr6:3266606-3266625 None:intergenic 50.0%
GATTAGGAGGGTTAAGGTGC+GGG - Chr6:3264076-3264095 MsG0680030464.01.T01:intron 50.0%
TGGTCCCTATGAAAGCAAGC+CGG - Chr6:3263901-3263920 MsG0680030464.01.T01:intron 50.0%
!! GTCAACCGGCTTGCTTTCAT+AGG + Chr6:3263909-3263928 None:intergenic 50.0%
ACTTCCATTGGAACAGCGGG+AGG + Chr6:3266396-3266415 None:intergenic 55.0%
CCTAACAGGCCGAAAGAGCA+GGG + Chr6:3266052-3266071 None:intergenic 55.0%
CTTGGCTGTGCCAACATGGT+TGG + Chr6:3265849-3265868 None:intergenic 55.0%
TCCTAACAGGCCGAAAGAGC+AGG + Chr6:3266053-3266072 None:intergenic 55.0%
TTGTGTGTAGGCAGGGGATC+AGG - Chr6:3265266-3265285 MsG0680030464.01.T01:intron 55.0%
! TGTTGTTGGCTGGCAGCGAT+TGG - Chr6:3265315-3265334 MsG0680030464.01.T01:intron 55.0%
!! GATGAACATGGTGGTGGCTG+TGG + Chr6:3263181-3263200 None:intergenic 55.0%
CCCTGCTCTTTCGGCCTGTT+AGG - Chr6:3266049-3266068 MsG0680030464.01.T01:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG - Chr6:3266389-3266408 MsG0680030464.01.T01:intron 60.0%
TGTAGGCAGGGGATCAGGCA+GGG - Chr6:3265271-3265290 MsG0680030464.01.T01:intron 60.0%
GTAGGCAGGGGATCAGGCAG+GGG - Chr6:3265272-3265291 MsG0680030464.01.T01:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG - Chr6:3265270-3265289 MsG0680030464.01.T01:intron 65.0%
TGGCTGGCAGCGATTGGTGC+AGG - Chr6:3265321-3265340 MsG0680030464.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 3263040 3266946 3263040 ID=MsG0680030464.01;Name=MsG0680030464.01
Chr6 mRNA 3263040 3266946 3263040 ID=MsG0680030464.01.T01;Parent=MsG0680030464.01;Name=MsG0680030464.01.T01;_AED=0.35;_eAED=0.35;_QI=25|1|1|1|1|1|3|257|298
Chr6 exon 3263040 3263617 3263040 ID=MsG0680030464.01.T01:exon:2702;Parent=MsG0680030464.01.T01
Chr6 exon 3264534 3264710 3264534 ID=MsG0680030464.01.T01:exon:2701;Parent=MsG0680030464.01.T01
Chr6 exon 3266523 3266946 3266523 ID=MsG0680030464.01.T01:exon:2700;Parent=MsG0680030464.01.T01
Chr6 five_prime_UTR 3266922 3266946 3266922 ID=MsG0680030464.01.T01:five_prime_utr;Parent=MsG0680030464.01.T01
Chr6 CDS 3266523 3266921 3266523 ID=MsG0680030464.01.T01:cds;Parent=MsG0680030464.01.T01
Chr6 CDS 3264534 3264710 3264534 ID=MsG0680030464.01.T01:cds;Parent=MsG0680030464.01.T01
Chr6 CDS 3263297 3263617 3263297 ID=MsG0680030464.01.T01:cds;Parent=MsG0680030464.01.T01
Chr6 three_prime_UTR 3263040 3263296 3263040 ID=MsG0680030464.01.T01:three_prime_utr;Parent=MsG0680030464.01.T01
Gene Sequence

>MsG0680030464.01.T01

ATGGTACTTTCAAACCTCACTTCATCATCATCATCTTCATCACCATATTCACAATTCTTCAACCTCTCATCATTCTCCAAACTCACATCACCATCTTCATCGTCACTTCTCTTCCACAGCCACCACCATGTTCATCACCAAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGTGGTGTTGGTAATGATCTTATTGATTTTGCTGAGTTTAGAAGAAGGGTTGGTAAGAATTGTACTGCTACTGATTCTACTGCTTTTTATCAGTTTCAAGCAAGAAGAGGAAGGGCAGGGGATCAGGCAGGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTGGCAGCGATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTTGGAAGACTTCGGATCTCGAACGACATTGAATTTGAAGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCGAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAAGTTCGAGTTGAGAAGGCTCTTGATGCTATCTACGTTTGTTGCTTTGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCAGTTCAAAAACAAGAGATCCGACGCATGGTTAAAGAGATGGCAGAGAAAGTAGAAGATGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAATACTTAG

Protein sequence

>MsG0680030464.01.T01

MVLSNLTSSSSSSSPYSQFFNLSSFSKLTSPSSSSLLFHSHHHVHHQTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGGVGNDLIDFAEFRRRVGKNCTATDSTAFYQFQARRGRAGDQAGDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMAEKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNT*