AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022647.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022647.01.T01 MTR_4g094100 75.000 104 3 2 118 199 294 396 2.70e-38 136
MsG0480022647.01.T01 MTR_4g094100 71.845 103 24 2 26 123 8 110 2.33e-34 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTTGTAATGTTTCTT+AGG 0.101575 4:+75006350 None:intergenic
TTTGGTGCTGCACTGGCTTT+TGG 0.190762 4:-75006864 MsG0480022646.01.T01:exon
TTACAAATTTGAATTGAAAT+TGG 0.205056 4:-75006339 MsG0480022647.01.T01:three_prime_UTR
GAGAATAGCGTTTAGGTAAA+AGG 0.298434 4:-75006797 MsG0480022646.01.T01:exon
AGAGCTATATCTTGGCTCTT+GGG 0.319137 4:-75006714 MsG0480022646.01.T01:exon
TGCTTTGTTTGGTGCTGCAC+TGG 0.320529 4:-75006871 MsG0480022646.01.T01:exon
CTTGTCGCTCTATGCTCTTT+TGG 0.331194 4:-75007249 MsG0480022646.01.T01:CDS
ACCTATTTACTCTGTTGCTT+TGG 0.332770 4:-75009154 MsG0480022646.01.T01:CDS
TGTCCTTCTCCATACCCTTT+GGG 0.340592 4:+75010882 None:intergenic
TTTCAATGGAAACATTGATT+TGG 0.343203 4:-75009191 MsG0480022646.01.T01:CDS
TTGACTTGTATAGTAATAAC+AGG 0.351584 4:+75006201 None:intergenic
CGCTTTCATGGGTCTGGGCA+CGG 0.359634 4:-75011275 MsG0480022647.01.T01:CDS
GTGTCCTTCTCCATACCCTT+TGG 0.364180 4:+75010881 None:intergenic
GGATTTAATACTTTGTTGTA+TGG 0.365893 4:-75006318 MsG0480022647.01.T01:three_prime_UTR
CAAATTTGTAATGTTTCTTA+GGG 0.371643 4:+75006351 None:intergenic
AAACCCCGCTTTCATGGGTC+TGG 0.371862 4:-75011281 MsG0480022647.01.T01:CDS
TGCCTGCATCAACAAGTTTA+CGG 0.377997 4:-75006571 MsG0480022647.01.T01:three_prime_UTR
TTTGAACTTGAAATCTCCTA+TGG 0.381122 4:+75009307 None:intergenic
AAGGTAAAACCCCGCTTTCA+TGG 0.395062 4:-75011287 MsG0480022647.01.T01:CDS
TGGATTGGTATTGGCTAGAA+TGG 0.395431 4:-75006844 MsG0480022646.01.T01:exon
TACCTAAACGCTATTCTCAT+TGG 0.401078 4:+75006802 None:intergenic
ACCAAAGCAACAGAGTAAAT+AGG 0.404150 4:+75009153 None:intergenic
GTGAGGTTGCATGCTTTGTT+TGG 0.412359 4:-75006882 MsG0480022646.01.T01:exon
AGATGGCAACATTTGCTGAT+AGG 0.414357 4:-75006447 MsG0480022647.01.T01:three_prime_UTR
AAGAGCTATATCTTGGCTCT+TGG 0.422433 4:-75006715 MsG0480022646.01.T01:exon
GCTTTCATGGGTCTGGGCAC+GGG 0.431138 4:-75011274 MsG0480022647.01.T01:intron
TTGTGCAGGAGGGGCTGAAT+TGG 0.442191 4:-75009268 MsG0480022646.01.T01:CDS
GAGCTATATCTTGGCTCTTG+GGG 0.443683 4:-75006713 MsG0480022646.01.T01:exon
CTCCAATGAGAATAGCGTTT+AGG 0.444897 4:-75006804 MsG0480022646.01.T01:exon
AATTCAAGAGGATATTTCAA+TGG 0.453590 4:-75009205 MsG0480022646.01.T01:CDS
AGGCATCATGTGCGTTGTGC+AGG 0.456822 4:-75009282 MsG0480022646.01.T01:CDS
AGCTTATACAGCCACATGAC+GGG 0.458469 4:+75006639 None:intergenic
AAAGGAAATTATATGAAGTA+AGG 0.466349 4:-75006779 MsG0480022646.01.T01:exon
TAACGGCATCAGAAGAGGTC+AGG 0.466740 4:-75006540 MsG0480022647.01.T01:three_prime_UTR
CAATGGAAACATTGATTTGG+AGG 0.468559 4:-75009188 MsG0480022646.01.T01:CDS
GGAGATTTCAAGTTCAAAGA+AGG 0.468781 4:-75009302 MsG0480022646.01.T01:CDS
CAACCTCACACAAAAGTACT+TGG 0.469806 4:+75006896 None:intergenic
AGTTCCAGCATTGAAAATGT+TGG 0.476733 4:-75009234 MsG0480022646.01.T01:CDS
GTGCCCAGACCCATGAAAGC+GGG 0.479321 4:+75011277 None:intergenic
AGTTGTTACCCACGAGGGTA+CGG 0.489950 4:-75010855 MsG0480022647.01.T01:CDS
AAATCAAAGCGCCTAGGTAG+TGG 0.493611 4:+75006504 None:intergenic
TTTAAAATGTAGTGGTAGTG+TGG 0.496785 4:-75009340 MsG0480022646.01.T01:CDS
TGCATAGTTGATTAATAAGA+TGG 0.503744 4:-75006464 MsG0480022647.01.T01:three_prime_UTR
CGAGGGTACGGGCACGAGTA+CGG 0.504682 4:-75010843 MsG0480022647.01.T01:CDS
CATCATGTGCGTTGTGCAGG+AGG 0.507154 4:-75009279 MsG0480022646.01.T01:CDS
ATCATGTGCGTTGTGCAGGA+GGG 0.514543 4:-75009278 MsG0480022646.01.T01:CDS
GAGGGTACGGGCACGAGTAC+GGG 0.514736 4:-75010842 MsG0480022647.01.T01:CDS
AGGTAAAACCCCGCTTTCAT+GGG 0.517848 4:-75011286 MsG0480022647.01.T01:CDS
CCGGTGCAAGAGCTATATCT+TGG 0.520752 4:-75006722 MsG0480022646.01.T01:exon
GTTAGACTTGGCACTGAAAG+AGG 0.521855 4:-75007296 MsG0480022646.01.T01:CDS
AATGGAAACATTGATTTGGA+GGG 0.525358 4:-75009187 MsG0480022646.01.T01:CDS
AACCCCGCTTTCATGGGTCT+GGG 0.527762 4:-75011280 MsG0480022647.01.T01:CDS
ACTTAGGTACCCAAAGGGTA+TGG 0.529696 4:-75010891 MsG0480022647.01.T01:intron
ATCAAGGATGCAATCCTCTC+CGG 0.530997 4:-75006741 MsG0480022646.01.T01:exon
GACCGTAAACTTGTTGATGC+AGG 0.533803 4:+75006569 None:intergenic
TCCAAAAGTTTAAAATGTAG+TGG 0.541221 4:-75009348 MsG0480022646.01.T01:CDS
TACAGCACAGATTTAGCAAG+TGG 0.555487 4:+75006385 None:intergenic
TCATGTGCGTTGTGCAGGAG+GGG 0.559520 4:-75009277 MsG0480022646.01.T01:CDS
GTTGTTACCCACGAGGGTAC+GGG 0.560711 4:-75010854 MsG0480022647.01.T01:CDS
AACGGCATCAGAAGAGGTCA+GGG 0.571583 4:-75006539 MsG0480022647.01.T01:three_prime_UTR
CAGCATTGAAAATGTTGGAG+AGG 0.575010 4:-75009229 MsG0480022646.01.T01:CDS
TACTCGTGCCCGTACCCTCG+TGG 0.575666 4:+75010846 None:intergenic
TCGTTCATTTCCCCGTCATG+TGG 0.576675 4:-75006650 MsG0480022646.01.T01:exon
AAAGCGCCTAGGTAGTGGAC+TGG 0.586047 4:+75006509 None:intergenic
CCAAGATATAGCTCTTGCAC+CGG 0.593067 4:+75006722 None:intergenic
AAGCTTATACAGCCACATGA+CGG 0.594048 4:+75006638 None:intergenic
AAATTTAAATCAAAGCGCCT+AGG 0.595234 4:+75006498 None:intergenic
AGATGCTCACTCACAGTGAG+AGG 0.597204 4:+75009129 None:intergenic
ATGGTTCCAGTCCACTACCT+AGG 0.598519 4:-75006515 MsG0480022647.01.T01:three_prime_UTR
AGTTTACGGTCAAGTGCTAA+CGG 0.603042 4:-75006557 MsG0480022647.01.T01:three_prime_UTR
CATCAGAAGAGGTCAGGGGA+TGG 0.606663 4:-75006534 MsG0480022647.01.T01:three_prime_UTR
AGATTGTGACAAATCTAGAG+TGG 0.607452 4:-75006603 MsG0480022647.01.T01:three_prime_UTR
AGTGCTAACGGCATCAGAAG+AGG 0.609124 4:-75006545 MsG0480022647.01.T01:three_prime_UTR
GCTTATACAGCCACATGACG+GGG 0.613132 4:+75006640 None:intergenic
GTACCCAAAGGGTATGGAGA+AGG 0.620148 4:-75010885 MsG0480022647.01.T01:CDS
TGTTGGAGAGGAAATTCAAG+AGG 0.625666 4:-75009217 MsG0480022646.01.T01:CDS
TGGACACTTAGGTACCCAAA+GGG 0.632794 4:-75010896 MsG0480022647.01.T01:intron
CGTGCCCAGACCCATGAAAG+CGG 0.633142 4:+75011276 None:intergenic
TGCCCAGACCCATGAAAGCG+GGG 0.634345 4:+75011278 None:intergenic
TGGCACTGAAAGAGGTGCAG+AGG 0.639466 4:-75007288 MsG0480022646.01.T01:CDS
ACTCGTGCCCGTACCCTCGT+GGG 0.641180 4:+75010847 None:intergenic
GCACTCACAATACAAGTGAG+AGG 0.647555 4:+75007200 None:intergenic
ATATAGCTCTTGCACCGGAG+AGG 0.655073 4:+75006727 None:intergenic
ATGGACACTTAGGTACCCAA+AGG 0.660208 4:-75010897 MsG0480022647.01.T01:intron
AGCTATATCTTGGCTCTTGG+GGG 0.667084 4:-75006712 MsG0480022646.01.T01:exon
GATGCTCACTCACAGTGAGA+GGG 0.667259 4:+75009130 None:intergenic
CACTAAAGTTGTTACCCACG+AGG 0.672454 4:-75010861 MsG0480022647.01.T01:CDS
ACGGCATCAGAAGAGGTCAG+GGG 0.723586 4:-75006538 MsG0480022647.01.T01:three_prime_UTR
ACTAAAGTTGTTACCCACGA+GGG 0.729646 4:-75010860 MsG0480022647.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATATATAATTTAT+AGG + Chr4:75006922-75006941 None:intergenic 0.0%
!! TTATTTATAAAAATATTTAT+AGG - Chr4:75007207-75007226 MsG0480022646.01.T01:intron 0.0%
!! ATTATATAAATATGTATATG+CGG + Chr4:75006327-75006346 None:intergenic 10.0%
!! GTTATAATATTTATTATTCA+TGG - Chr4:75009853-75009872 MsG0480022646.01.T01:intron 10.0%
!!! AAAAATGTAATTTTTAATAC+GGG - Chr4:75007257-75007276 MsG0480022646.01.T01:CDS 10.0%
!!! TGAGTTAATTTTAAAAAATT+TGG - Chr4:75006516-75006535 MsG0480022647.01.T01:three_prime_UTR 10.0%
!! AATTTCTTACTAAAAAAAAC+AGG + Chr4:75011280-75011299 None:intergenic 15.0%
!! ATATAGAAAAAACTATAAGA+AGG + Chr4:75008073-75008092 None:intergenic 15.0%
!! TAAATAAATTAGATACGTTA+TGG + Chr4:75007093-75007112 None:intergenic 15.0%
!! TTACAAATTTGAATTGAAAT+TGG - Chr4:75011169-75011188 MsG0480022647.01.T01:intron 15.0%
!! TTATATAAATATGTATATGC+GGG + Chr4:75006326-75006345 None:intergenic 15.0%
!!! ATTGTATTAAGTAGTTTTTT+TGG + Chr4:75006409-75006428 None:intergenic 15.0%
!!! GTTCTTTTTATATTAAAACT+AGG - Chr4:75010553-75010572 MsG0480022647.01.T01:intron 15.0%
!!! TAAATGCTATTTTGTTTTAT+TGG - Chr4:75009157-75009176 MsG0480022646.01.T01:CDS 15.0%
!!! TACACGTTTTAATTTTAATT+AGG + Chr4:75007656-75007675 None:intergenic 15.0%
!!! TGATTTAAATTTTGAATTGA+TGG - Chr4:75011021-75011040 MsG0480022647.01.T01:intron 15.0%
!!! TTATTTCTTATTTTTCTTTC+AGG - Chr4:75010190-75010209 MsG0480022646.01.T01:intron 15.0%
!! AAAGGAAATTATATGAAGTA+AGG - Chr4:75010729-75010748 MsG0480022647.01.T01:intron 20.0%
!! AACTATAGAAGAAGATTAAA+TGG - Chr4:75007973-75007992 MsG0480022646.01.T01:CDS 20.0%
!! AATACCCACAAAATTTAAAT+GGG - Chr4:75006258-75006277 MsG0480022647.01.T01:three_prime_UTR 20.0%
!! AATATTATAACTCTGTAGTT+AGG + Chr4:75009844-75009863 None:intergenic 20.0%
!! ACACTAATCATAAACTAAAA+CGG + Chr4:75007131-75007150 None:intergenic 20.0%
!! ATACATATAATATGTCATGT+TGG - Chr4:75008113-75008132 MsG0480022646.01.T01:intron 20.0%
!! CAAATTTGTAATGTTTCTTA+GGG + Chr4:75011160-75011179 None:intergenic 20.0%
!! TAAAAAAGCCCATTAAAATT+CGG + Chr4:75006815-75006834 None:intergenic 20.0%
!! TAATACCCACAAAATTTAAA+TGG - Chr4:75006257-75006276 MsG0480022647.01.T01:three_prime_UTR 20.0%
!! TATATAAATATGTATATGCG+GGG + Chr4:75006325-75006344 None:intergenic 20.0%
!! TCAAATTTGTAATGTTTCTT+AGG + Chr4:75011161-75011180 None:intergenic 20.0%
!! TCACAATTGAAATAAAACTA+TGG + Chr4:75006543-75006562 None:intergenic 20.0%
!! TTTAACATTAAGATAGGAAA+AGG + Chr4:75008930-75008949 None:intergenic 20.0%
!!! ACAATTTTTTAGGGATATTT+TGG - Chr4:75006451-75006470 MsG0480022647.01.T01:three_prime_UTR 20.0%
!!! TAATCTTTTGGTTATGAATA+TGG - Chr4:75010404-75010423 MsG0480022646.01.T01:exon 20.0%
!!! TTAAGTAGTTTTTTTGGTTT+AGG + Chr4:75006403-75006422 None:intergenic 20.0%
!!! TTTTTTCATTTTGGAATCAA+TGG - Chr4:75009248-75009267 MsG0480022646.01.T01:CDS 20.0%
! AAAAAAGCCCATTAAAATTC+GGG + Chr4:75006814-75006833 None:intergenic 25.0%
! AACGAGTTTAACATTAAGAT+AGG + Chr4:75008936-75008955 None:intergenic 25.0%
! AAGATTAAATCATAAGTCCA+TGG + Chr4:75010391-75010410 None:intergenic 25.0%
! AATTCAAGAGGATATTTCAA+TGG - Chr4:75008303-75008322 MsG0480022646.01.T01:intron 25.0%
! ATACCCTAATTGAATGAAAT+TGG - Chr4:75008721-75008740 MsG0480022646.01.T01:intron 25.0%
! ATTTAGCCCGATTAATTATA+GGG - Chr4:75006768-75006787 MsG0480022646.01.T01:exon 25.0%
! CACAAAATTTAAATGGGTAT+GGG - Chr4:75006264-75006283 MsG0480022647.01.T01:three_prime_UTR 25.0%
! CCTATCATGCAATAAAAAAT+TGG + Chr4:75008989-75009008 None:intergenic 25.0%
! TAATTGGAGTTCAGAAATAA+CGG + Chr4:75010013-75010032 None:intergenic 25.0%
! TACCCTAATTGAATGAAATT+GGG - Chr4:75008722-75008741 MsG0480022646.01.T01:intron 25.0%
! TACTAAATAAAAAGCAGTAG+TGG + Chr4:75009794-75009813 None:intergenic 25.0%
! TAGACTCTCTCATAAATATA+GGG + Chr4:75009071-75009090 None:intergenic 25.0%
! TATAATTAATCGGGCTAAAT+GGG + Chr4:75006768-75006787 None:intergenic 25.0%
! TGCATAGTTGATTAATAAGA+TGG - Chr4:75011044-75011063 MsG0480022647.01.T01:intron 25.0%
! TTAGACTCTCTCATAAATAT+AGG + Chr4:75009072-75009091 None:intergenic 25.0%
! TTTATTCAAACATGTACAGA+AGG + Chr4:75009425-75009444 None:intergenic 25.0%
! TTTATTGACATGTAGATGTA+GGG - Chr4:75008760-75008779 MsG0480022646.01.T01:intron 25.0%
!! AATGTGTTGGTATAACAAAT+AGG - Chr4:75009091-75009110 MsG0480022646.01.T01:intron 25.0%
!! ACCACTACATTTTAAACTTT+TGG + Chr4:75008164-75008183 None:intergenic 25.0%
!! CATACCCATTTAAATTTTGT+GGG + Chr4:75006265-75006284 None:intergenic 25.0%
!! GGACTTATGATTTAATCTTT+TGG - Chr4:75010392-75010411 MsG0480022646.01.T01:exon 25.0%
!! GGATTTAATACTTTGTTGTA+TGG - Chr4:75011190-75011209 MsG0480022647.01.T01:intron 25.0%
!! TCCAAAAGTTTAAAATGTAG+TGG - Chr4:75008160-75008179 MsG0480022646.01.T01:CDS 25.0%
!! TTTCAATGGAAACATTGATT+TGG - Chr4:75008317-75008336 MsG0480022646.01.T01:CDS 25.0%
!! TTTTATTGACATGTAGATGT+AGG - Chr4:75008759-75008778 MsG0480022646.01.T01:intron 25.0%
!!! ACGGGTATTTTTTACAAATA+CGG - Chr4:75006684-75006703 MsG0480022646.01.T01:exon 25.0%
!!! ACTGCTTTTTATTTAGTACA+AGG - Chr4:75009796-75009815 MsG0480022646.01.T01:intron 25.0%
!!! AGTTTTTTTGGTTTAGGTTT+AGG + Chr4:75006397-75006416 None:intergenic 25.0%
!!! ATACTGATAGTTTTAAACTG+CGG + Chr4:75008646-75008665 None:intergenic 25.0%
!!! ATTTTTTACAAATACGGGTA+TGG - Chr4:75006690-75006709 MsG0480022646.01.T01:exon 25.0%
!!! CCAATTTTTTATTGCATGAT+AGG - Chr4:75008986-75009005 MsG0480022646.01.T01:intron 25.0%
!!! TGCTAGCTATTTTTTCATTT+TGG - Chr4:75009239-75009258 MsG0480022646.01.T01:CDS 25.0%
!!! TTTTTTACAAATACGGGTAT+GGG - Chr4:75006691-75006710 MsG0480022646.01.T01:exon 25.0%
AAAGGAATCAGTTGTAAACT+TGG - Chr4:75009346-75009365 MsG0480022646.01.T01:CDS 30.0%
AAAGGTGGGATAAATAATTG+AGG + Chr4:75008912-75008931 None:intergenic 30.0%
AAATTCGGGCTCAATATTTA+AGG + Chr4:75006800-75006819 None:intergenic 30.0%
AACAAGATTATGATATCAGC+AGG + Chr4:75009642-75009661 None:intergenic 30.0%
AACATTAAGATAGGAAAAGG+TGG + Chr4:75008927-75008946 None:intergenic 30.0%
ACATTAAGATAGGAAAAGGT+GGG + Chr4:75008926-75008945 None:intergenic 30.0%
ACCCTAATTGAATGAAATTG+GGG - Chr4:75008723-75008742 MsG0480022646.01.T01:intron 30.0%
AGAAAAGTTATGTAGAAGGA+AGG - Chr4:75008845-75008864 MsG0480022646.01.T01:intron 30.0%
AGCATGAAACCTTTATATTG+TGG - Chr4:75008593-75008612 MsG0480022646.01.T01:intron 30.0%
ATCCCTAAAAAATTGTACAC+CGG + Chr4:75006447-75006466 None:intergenic 30.0%
ATTGTTACTGTAGTAACCTT+AGG - Chr4:75007721-75007740 MsG0480022646.01.T01:CDS 30.0%
CAAAAACAAAACTGTAAGAC+TGG + Chr4:75009037-75009056 None:intergenic 30.0%
CATACATTTGACAAGATGAA+AGG + Chr4:75007591-75007610 None:intergenic 30.0%
CATTTAGCCCGATTAATTAT+AGG - Chr4:75006767-75006786 MsG0480022646.01.T01:exon 30.0%
CCACAAAATTTAAATGGGTA+TGG - Chr4:75006263-75006282 MsG0480022647.01.T01:three_prime_UTR 30.0%
CTATAATTAATCGGGCTAAA+TGG + Chr4:75006769-75006788 None:intergenic 30.0%
GATGAAAATGACTGCAAAAA+AGG + Chr4:75009985-75010004 None:intergenic 30.0%
GTATGAAATAAGGATCAAGA+TGG - Chr4:75008461-75008480 MsG0480022646.01.T01:intron 30.0%
GTGATTGTTAAATTCAGCAT+AGG - Chr4:75008422-75008441 MsG0480022646.01.T01:intron 30.0%
GTGTCATGGACAAAATAAAA+AGG + Chr4:75010059-75010078 None:intergenic 30.0%
TAATCACTTGTATCTACGAT+TGG - Chr4:75007900-75007919 MsG0480022646.01.T01:intron 30.0%
TATGGTAGAGTTGTCAAAAT+GGG + Chr4:75007399-75007418 None:intergenic 30.0%
TATTTGCGGCTATATATATC+AGG - Chr4:75009608-75009627 MsG0480022646.01.T01:intron 30.0%
TCACATTTCTAAGTTTGAGT+TGG + Chr4:75008684-75008703 None:intergenic 30.0%
TCATCTTGTCAAATGTATGT+TGG - Chr4:75007592-75007611 MsG0480022646.01.T01:CDS 30.0%
TGTTGGTATAACAAATAGGT+AGG - Chr4:75009095-75009114 MsG0480022646.01.T01:intron 30.0%
TTATTGACATGTAGATGTAG+GGG - Chr4:75008761-75008780 MsG0480022646.01.T01:intron 30.0%
TTTGAACTTGAAATCTCCTA+TGG + Chr4:75008204-75008223 None:intergenic 30.0%
! AAATTTAAATCAAAGCGCCT+AGG + Chr4:75011013-75011032 None:intergenic 30.0%
! AAGGAAGGAACTGTATTTTA+AGG - Chr4:75008860-75008879 MsG0480022646.01.T01:intron 30.0%
! AAGTAAGGATTTTGTTCAAG+AGG - Chr4:75010744-75010763 MsG0480022647.01.T01:intron 30.0%
! ATATTGAGCCCGAATTTTAA+TGG - Chr4:75006803-75006822 MsG0480022646.01.T01:exon 30.0%
! ATGTAATTTTTAATACGGGC+CGG - Chr4:75007261-75007280 MsG0480022646.01.T01:CDS 30.0%
! CCATACCCATTTAAATTTTG+TGG + Chr4:75006266-75006285 None:intergenic 30.0%
! GGACAAAGATAAGATTTTCA+TGG - Chr4:75010589-75010608 MsG0480022647.01.T01:intron 30.0%
! GTCTTTTCATAGTTAAAGTG+CGG - Chr4:75006573-75006592 MsG0480022647.01.T01:three_prime_UTR 30.0%
! TCCTTCTACATAACTTTTCT+TGG + Chr4:75008845-75008864 None:intergenic 30.0%
! TCTTTTCATAGTTAAAGTGC+GGG - Chr4:75006574-75006593 MsG0480022647.01.T01:three_prime_UTR 30.0%
! TGGTGTTTTGCATGAAAATA+GGG + Chr4:75007438-75007457 None:intergenic 30.0%
! TTTAAAATGTAGTGGTAGTG+TGG - Chr4:75008168-75008187 MsG0480022646.01.T01:CDS 30.0%
! TTTTCATTACCTTCGGATTA+AGG - Chr4:75008819-75008838 MsG0480022646.01.T01:intron 30.0%
! TTTTTACAAATACGGGTATG+GGG - Chr4:75006692-75006711 MsG0480022646.01.T01:exon 30.0%
!! AATGGAAACATTGATTTGGA+GGG - Chr4:75008321-75008340 MsG0480022646.01.T01:CDS 30.0%
!! TATTGAGCCCGAATTTTAAT+GGG - Chr4:75006804-75006823 MsG0480022646.01.T01:exon 30.0%
!! TGTCATGTTGGTTAATTTTC+AGG - Chr4:75008125-75008144 MsG0480022646.01.T01:intron 30.0%
!! TTGGTGTTTTGCATGAAAAT+AGG + Chr4:75007439-75007458 None:intergenic 30.0%
!! TTTTTGCAGTCATTTTCATC+AGG - Chr4:75009985-75010004 MsG0480022646.01.T01:intron 30.0%
!!! CGGGTATTTTTTACAAATAC+GGG - Chr4:75006685-75006704 MsG0480022646.01.T01:exon 30.0%
!!! GTTTTTTGAAGTTGAGAAAC+TGG + Chr4:75007805-75007824 None:intergenic 30.0%
!!! TTTTATTTTGTCCATGACAC+AGG - Chr4:75010059-75010078 MsG0480022646.01.T01:intron 30.0%
!!! TTTTTTGTTATGTGCGCTAA+CGG + Chr4:75006896-75006915 None:intergenic 30.0%
AATGTTAAACTCGTTGCCAT+AGG - Chr4:75008941-75008960 MsG0480022646.01.T01:intron 35.0%
AATTTAAATGGGTATGGGCA+CGG - Chr4:75006269-75006288 MsG0480022647.01.T01:three_prime_UTR 35.0%
ACAACTATTGTGACTTTGTG+AGG - Chr4:75007689-75007708 MsG0480022646.01.T01:intron 35.0%
ACCAAAGCAACAGAGTAAAT+AGG + Chr4:75008358-75008377 None:intergenic 35.0%
ACCCCCAATTTCATTCAATT+AGG + Chr4:75008728-75008747 None:intergenic 35.0%
ACTCAGTTTATCTACTTCAC+TGG - Chr4:75007859-75007878 MsG0480022646.01.T01:intron 35.0%
AGATTGTGACAAATCTAGAG+TGG - Chr4:75010905-75010924 MsG0480022647.01.T01:intron 35.0%
AGTTGGAAAATTATCGCCTT+TGG - Chr4:75010098-75010117 MsG0480022646.01.T01:intron 35.0%
ATGAGAGAGTCTAAATGTGT+TGG - Chr4:75009078-75009097 MsG0480022646.01.T01:intron 35.0%
ATTAGGCCATCAACTAATTG+TGG + Chr4:75007639-75007658 None:intergenic 35.0%
ATTTGTCCAAGACAATCACA+AGG - Chr4:75010480-75010499 MsG0480022647.01.T01:intron 35.0%
CAACAACAAAGATTCCTGTA+CGG + Chr4:75009494-75009513 None:intergenic 35.0%
CAACTATTGTGACTTTGTGA+GGG - Chr4:75007690-75007709 MsG0480022646.01.T01:intron 35.0%
CCCAAACCCTATAATTAATC+GGG + Chr4:75006777-75006796 None:intergenic 35.0%
CCCCCAATTTCATTCAATTA+GGG + Chr4:75008727-75008746 None:intergenic 35.0%
CCCGATTAATTATAGGGTTT+GGG - Chr4:75006774-75006793 MsG0480022646.01.T01:exon 35.0%
CCCTAATTGAATGAAATTGG+GGG - Chr4:75008724-75008743 MsG0480022646.01.T01:intron 35.0%
CTAGTTCATGTACATACCTA+TGG + Chr4:75008960-75008979 None:intergenic 35.0%
CTATGGTAGAGTTGTCAAAA+TGG + Chr4:75007400-75007419 None:intergenic 35.0%
CTCACTTGTGCAATTATTTG+CGG - Chr4:75009594-75009613 MsG0480022646.01.T01:intron 35.0%
CTTGGACAAATTTAACTACC+AGG + Chr4:75010471-75010490 None:intergenic 35.0%
GAATCAGTTGTAAACTTGGT+TGG - Chr4:75009350-75009369 MsG0480022646.01.T01:CDS 35.0%
GAGAATAGCGTTTAGGTAAA+AGG - Chr4:75010711-75010730 MsG0480022647.01.T01:intron 35.0%
GCCAAGAAAAGTTATGTAGA+AGG - Chr4:75008841-75008860 MsG0480022646.01.T01:intron 35.0%
GCCCAAACCCTATAATTAAT+CGG + Chr4:75006778-75006797 None:intergenic 35.0%
TAAAAAGCAGTAGTGGCAAA+AGG + Chr4:75009787-75009806 None:intergenic 35.0%
TAAAAAGGTCACCTACTTGA+AGG + Chr4:75010044-75010063 None:intergenic 35.0%
TACCTAAACGCTATTCTCAT+TGG + Chr4:75010709-75010728 None:intergenic 35.0%
TAGCAAAGTGTATCTACCAA+AGG + Chr4:75010117-75010136 None:intergenic 35.0%
TATAAGAAGGAACTTGCCTT+TGG + Chr4:75008060-75008079 None:intergenic 35.0%
TCTGCAGTTTCATATGGTTA+TGG - Chr4:75009278-75009297 MsG0480022646.01.T01:CDS 35.0%
TGGAGTTGACAAGAACAAAA+AGG - Chr4:75009328-75009347 MsG0480022646.01.T01:CDS 35.0%
TTAGGCCATCAACTAATTGT+GGG + Chr4:75007638-75007657 None:intergenic 35.0%
TTTCTTCCTCGTGTTGAATT+TGG - Chr4:75009464-75009483 MsG0480022646.01.T01:CDS 35.0%
! ACCTATTTACTCTGTTGCTT+TGG - Chr4:75008354-75008373 MsG0480022646.01.T01:CDS 35.0%
! AGTTCCAGCATTGAAAATGT+TGG - Chr4:75008274-75008293 MsG0480022646.01.T01:intron 35.0%
! CCTGAACTTTTCATTACCTT+CGG - Chr4:75008812-75008831 MsG0480022646.01.T01:intron 35.0%
! GATTTTGTTCAAGAGGATCA+AGG - Chr4:75010751-75010770 MsG0480022647.01.T01:intron 35.0%
! GTTTTGCATGAAAATAGGGA+TGG + Chr4:75007434-75007453 None:intergenic 35.0%
!! CAATGGAAACATTGATTTGG+AGG - Chr4:75008320-75008339 MsG0480022646.01.T01:CDS 35.0%
!! CTTCAGTTCTTGTTATTACC+TGG - Chr4:75009183-75009202 MsG0480022646.01.T01:CDS 35.0%
!! CTTGAAGGTACTCTTGTAAT+TGG + Chr4:75010029-75010048 None:intergenic 35.0%
!! GACGTTTATGATTTTGACAC+TGG - Chr4:75009308-75009327 MsG0480022646.01.T01:CDS 35.0%
!! GGAGATTTCAAGTTCAAAGA+AGG - Chr4:75008206-75008225 MsG0480022646.01.T01:CDS 35.0%
!! GTGTGGAAAAAGTATTCCAT+AGG - Chr4:75008185-75008204 MsG0480022646.01.T01:CDS 35.0%
!! TATAGTTGCTATTTGGACCA+TGG - Chr4:75010371-75010390 MsG0480022646.01.T01:intron 35.0%
!! TATGCTCTTTTGGTTGCTTT+TGG - Chr4:75010269-75010288 MsG0480022646.01.T01:intron 35.0%
!! TTACAAGAGTACCTTCAAGT+AGG - Chr4:75010030-75010049 MsG0480022646.01.T01:intron 35.0%
!! TTTTTGTTATGTGCGCTAAC+GGG + Chr4:75006895-75006914 None:intergenic 35.0%
!!! TGCCGGTGTACAATTTTTTA+GGG - Chr4:75006442-75006461 MsG0480022647.01.T01:three_prime_UTR 35.0%
!!! TTTAATGGGCTTTTTTAGCC+CGG - Chr4:75006818-75006837 MsG0480022646.01.T01:exon 35.0%
AAAGAACTGTTCCACTCAAG+GGG + Chr4:75009925-75009944 None:intergenic 40.0%
AAGAGGTGGTGATTAAGGAA+GGG + Chr4:75008031-75008050 None:intergenic 40.0%
AAGCTTATACAGCCACATGA+CGG + Chr4:75010873-75010892 None:intergenic 40.0%
AATATGTATATGCGGGGTTG+TGG + Chr4:75006319-75006338 None:intergenic 40.0%
ACATGTAGATGTAGGGGATA+AGG - Chr4:75008767-75008786 MsG0480022646.01.T01:intron 40.0%
ACTAAAGTTGTTACCCACGA+GGG - Chr4:75006648-75006667 MsG0480022646.01.T01:exon 40.0%
AGATAAACTGAGTGAAGTCC+CGG + Chr4:75007852-75007871 None:intergenic 40.0%
AGCAACTCTGCAGTTTCATA+TGG - Chr4:75009272-75009291 MsG0480022646.01.T01:CDS 40.0%
AGGATTGTAGCAAGAGGATA+TGG - Chr4:75007769-75007788 MsG0480022646.01.T01:CDS 40.0%
AGTAGAAGAGGTGGTGATTA+AGG + Chr4:75008036-75008055 None:intergenic 40.0%
AGTTTACGGTCAAGTGCTAA+CGG - Chr4:75010951-75010970 MsG0480022647.01.T01:intron 40.0%
ATAGAGTAGAGCTGTCAAAC+CGG - Chr4:75006738-75006757 MsG0480022646.01.T01:exon 40.0%
ATATGTATATGCGGGGTTGT+GGG + Chr4:75006318-75006337 None:intergenic 40.0%
ATGACAAACATCAAGGTGCA+AGG + Chr4:75007559-75007578 None:intergenic 40.0%
ATTTAAATGGGTATGGGCAC+GGG - Chr4:75006270-75006289 MsG0480022647.01.T01:three_prime_UTR 40.0%
ATTTAGTACAAGGCAGTGCA+AGG - Chr4:75009806-75009825 MsG0480022646.01.T01:intron 40.0%
CAGTTGTAAACTTGGTTGGA+AGG - Chr4:75009354-75009373 MsG0480022646.01.T01:CDS 40.0%
CATAGGTTTATGTGATGCTC+GGG - Chr4:75008439-75008458 MsG0480022646.01.T01:intron 40.0%
CATAGTTAAAGTGCGGGTAA+TGG - Chr4:75006580-75006599 MsG0480022647.01.T01:three_prime_UTR 40.0%
CATGCTTTGTAAAGGACACT+TGG + Chr4:75007458-75007477 None:intergenic 40.0%
CCGAAGGTAATGAAAAGTTC+AGG + Chr4:75008815-75008834 None:intergenic 40.0%
CTAAAAAATTGTACACCGGC+AGG + Chr4:75006443-75006462 None:intergenic 40.0%
CTCCAATGAGAATAGCGTTT+AGG - Chr4:75010704-75010723 MsG0480022647.01.T01:intron 40.0%
GAAAGAACTGTTCCACTCAA+GGG + Chr4:75009926-75009945 None:intergenic 40.0%
GCATAGGTTTATGTGATGCT+CGG - Chr4:75008438-75008457 MsG0480022646.01.T01:intron 40.0%
GCATGTGATGACAAACATCA+AGG + Chr4:75007566-75007585 None:intergenic 40.0%
GCCCGATTAATTATAGGGTT+TGG - Chr4:75006773-75006792 MsG0480022646.01.T01:exon 40.0%
GTTACTGTAGTAACCTTAGG+TGG - Chr4:75007724-75007743 MsG0480022646.01.T01:CDS 40.0%
GTTTGACAGCTCTACTCTAT+GGG + Chr4:75006738-75006757 None:intergenic 40.0%
TACAGCACAGATTTAGCAAG+TGG + Chr4:75011126-75011145 None:intergenic 40.0%
TACTTTGTATGTGCTTCCAC+CGG - Chr4:75007830-75007849 MsG0480022646.01.T01:intron 40.0%
TAGGCCATCAACTAATTGTG+GGG + Chr4:75007637-75007656 None:intergenic 40.0%
TCAAATGTATGTTGGCCATG+TGG - Chr4:75007600-75007619 MsG0480022646.01.T01:CDS 40.0%
TCGGTAATGTCAATGCACAA+AGG + Chr4:75010441-75010460 None:intergenic 40.0%
TGAAAGAACTGTTCCACTCA+AGG + Chr4:75009927-75009946 None:intergenic 40.0%
TGAGAAACAATACTGAACGC+AGG + Chr4:75009578-75009597 None:intergenic 40.0%
TGATGCTCGGGTATGAAATA+AGG - Chr4:75008451-75008470 MsG0480022646.01.T01:intron 40.0%
TGCAGCTGTAATTACAGTTC+TGG - Chr4:75008567-75008586 MsG0480022646.01.T01:intron 40.0%
TGCCTGCATCAACAAGTTTA+CGG - Chr4:75010937-75010956 MsG0480022647.01.T01:intron 40.0%
TGTTGGAGAGGAAATTCAAG+AGG - Chr4:75008291-75008310 MsG0480022646.01.T01:intron 40.0%
TTAACTACCAGGTTTCCGAT+CGG + Chr4:75010460-75010479 None:intergenic 40.0%
TTATTACCTGGCTCAACTTG+AGG - Chr4:75009195-75009214 MsG0480022646.01.T01:CDS 40.0%
TTGAATTTGGAAAGCCGTAC+AGG - Chr4:75009477-75009496 MsG0480022646.01.T01:CDS 40.0%
! AAACTAGGTTGTGTTGTTGC+AGG - Chr4:75010568-75010587 MsG0480022647.01.T01:intron 40.0%
! AAGAGCTATATCTTGGCTCT+TGG - Chr4:75010793-75010812 MsG0480022647.01.T01:intron 40.0%
! AGAGCTATATCTTGGCTCTT+GGG - Chr4:75010794-75010813 MsG0480022647.01.T01:intron 40.0%
! AGATGGCAACATTTGCTGAT+AGG - Chr4:75011061-75011080 MsG0480022647.01.T01:intron 40.0%
! CAGCATTGAAAATGTTGGAG+AGG - Chr4:75008279-75008298 MsG0480022646.01.T01:intron 40.0%
! CTCTCCAACATTTTCAATGC+TGG + Chr4:75008281-75008300 None:intergenic 40.0%
! TATTTTGTCCATGACACAGG+TGG - Chr4:75010062-75010081 MsG0480022646.01.T01:intron 40.0%
! TCGCGAGTATAGTTGCTATT+TGG - Chr4:75010364-75010383 MsG0480022646.01.T01:intron 40.0%
! TGTGCATTGACATTACCGAT+CGG - Chr4:75010442-75010461 MsG0480022647.01.T01:intron 40.0%
!! AATTTACCTCAAGTTGAGCC+AGG + Chr4:75009204-75009223 None:intergenic 40.0%
!! CAACCTCACACAAAAGTACT+TGG + Chr4:75010615-75010634 None:intergenic 40.0%
!! TGGATTGGTATTGGCTAGAA+TGG - Chr4:75010664-75010683 MsG0480022647.01.T01:intron 40.0%
!!! ACTGGCTTTTGGATTGGTAT+TGG - Chr4:75010655-75010674 MsG0480022647.01.T01:intron 40.0%
!!! CTGCCGGTGTACAATTTTTT+AGG - Chr4:75006441-75006460 MsG0480022647.01.T01:three_prime_UTR 40.0%
!!! TTTTCTTGGCCTTAATCCGA+AGG + Chr4:75008831-75008850 None:intergenic 40.0%
AAAAAGCCCGGTTGGAAAAC+GGG + Chr4:75007338-75007357 None:intergenic 45.0%
AAAATTGTACACCGGCAGGA+TGG + Chr4:75006439-75006458 None:intergenic 45.0%
AAGGTAAAACCCCGCTTTCA+TGG - Chr4:75006221-75006240 MsG0480022647.01.T01:three_prime_UTR 45.0%
ACAGCTCTACTCTATGGGTA+GGG + Chr4:75006733-75006752 None:intergenic 45.0%
ACCACCTCTTCTACTTCCAA+AGG - Chr4:75008041-75008060 MsG0480022646.01.T01:intron 45.0%
ACCATTTCGGTTGAGCTATC+AGG - Chr4:75009726-75009745 MsG0480022646.01.T01:intron 45.0%
ACTTAGGTACCCAAAGGGTA+TGG - Chr4:75006617-75006636 MsG0480022646.01.T01:exon 45.0%
ACTTTGTATGTGCTTCCACC+GGG - Chr4:75007831-75007850 MsG0480022646.01.T01:intron 45.0%
AGCTTATACAGCCACATGAC+GGG + Chr4:75010872-75010891 None:intergenic 45.0%
AGGTAAAACCCCGCTTTCAT+GGG - Chr4:75006222-75006241 MsG0480022647.01.T01:three_prime_UTR 45.0%
ATCAAGGATGCAATCCTCTC+CGG - Chr4:75010767-75010786 MsG0480022647.01.T01:intron 45.0%
ATGAAATTGGGGGTCAGAGT+AGG - Chr4:75008734-75008753 MsG0480022646.01.T01:intron 45.0%
ATGGACACTTAGGTACCCAA+AGG - Chr4:75006611-75006630 MsG0480022647.01.T01:three_prime_UTR 45.0%
ATTGCAAGAGACACATGGTG+CGG + Chr4:75007483-75007502 None:intergenic 45.0%
CAAAAAGCCCGGTTGGAAAA+CGG + Chr4:75007339-75007358 None:intergenic 45.0%
CAATAAGAACTCCATCCTGC+CGG - Chr4:75006425-75006444 MsG0480022647.01.T01:three_prime_UTR 45.0%
CACTAAAGTTGTTACCCACG+AGG - Chr4:75006647-75006666 MsG0480022646.01.T01:exon 45.0%
CACTAGGATAATGCCACCTA+AGG + Chr4:75007740-75007759 None:intergenic 45.0%
CACTTGCCTTGTGATTGTCT+TGG + Chr4:75010489-75010508 None:intergenic 45.0%
CATGCATTGCAAGAGACACA+TGG + Chr4:75007488-75007507 None:intergenic 45.0%
CATGGAAGGATTGTAGCAAG+AGG - Chr4:75007763-75007782 MsG0480022646.01.T01:CDS 45.0%
CCAAATGCTGCAAAACACAG+AGG + Chr4:75009763-75009782 None:intergenic 45.0%
CCAAGATATAGCTCTTGCAC+CGG + Chr4:75010789-75010808 None:intergenic 45.0%
CCATTTCGGTTGAGCTATCA+GGG - Chr4:75009727-75009746 MsG0480022646.01.T01:intron 45.0%
CTCTTGCTACAATCCTTCCA+TGG + Chr4:75007765-75007784 None:intergenic 45.0%
CTTAGGTGGCATTATCCTAG+TGG - Chr4:75007738-75007757 MsG0480022646.01.T01:CDS 45.0%
CTTTCAGCATCAATCCTCGT+TGG - Chr4:75009941-75009960 MsG0480022646.01.T01:intron 45.0%
GAAGAGGTGGTGATTAAGGA+AGG + Chr4:75008032-75008051 None:intergenic 45.0%
GCAACTATACTCGCGAAGAA+AGG + Chr4:75010360-75010379 None:intergenic 45.0%
GCACTCACAATACAAGTGAG+AGG + Chr4:75010311-75010330 None:intergenic 45.0%
GCTTACTTATGCCTTGCTCT+CGG - Chr4:75009513-75009532 MsG0480022646.01.T01:CDS 45.0%
GGCTTGGAGCCACAATATAA+AGG + Chr4:75008605-75008624 None:intergenic 45.0%
GGCTTTCCAAATTCAACACG+AGG + Chr4:75009473-75009492 None:intergenic 45.0%
GGTTTGACAGCTCTACTCTA+TGG + Chr4:75006739-75006758 None:intergenic 45.0%
GTAGAGTTGTCAAAATGGGC+CGG + Chr4:75007395-75007414 None:intergenic 45.0%
GTGGATGGAGACAAAGAAGT+TGG - Chr4:75010081-75010100 MsG0480022646.01.T01:intron 45.0%
TATGTATATGCGGGGTTGTG+GGG + Chr4:75006317-75006336 None:intergenic 45.0%
TGAAATATACTACCCGAGCC+AGG + Chr4:75007313-75007332 None:intergenic 45.0%
TGATAGCTCAACCGAAATGG+TGG + Chr4:75009727-75009746 None:intergenic 45.0%
TGCTGTAGTGTCCACCATTT+CGG - Chr4:75009713-75009732 MsG0480022646.01.T01:intron 45.0%
TGGACACTTAGGTACCCAAA+GGG - Chr4:75006612-75006631 MsG0480022647.01.T01:three_prime_UTR 45.0%
TGGACCCCACAATTAGTTGA+TGG - Chr4:75007630-75007649 MsG0480022646.01.T01:intron 45.0%
TGTCCTTCTCCATACCCTTT+GGG + Chr4:75006629-75006648 None:intergenic 45.0%
TTAAACCGCACTTGAAGGCT+TGG + Chr4:75008621-75008640 None:intergenic 45.0%
TTATCCTAGTGGTCCATGGA+AGG - Chr4:75007749-75007768 MsG0480022646.01.T01:CDS 45.0%
! AAATCAAAGCGCCTAGGTAG+TGG + Chr4:75011007-75011026 None:intergenic 45.0%
! AGCTATATCTTGGCTCTTGG+GGG - Chr4:75010796-75010815 MsG0480022647.01.T01:intron 45.0%
! CCTCTGTGTTTTGCAGCATT+TGG - Chr4:75009760-75009779 MsG0480022646.01.T01:exon 45.0%
! CTTGCCTTTGGAAGTAGAAG+AGG + Chr4:75008048-75008067 None:intergenic 45.0%
! CTTGTCGCTCTATGCTCTTT+TGG - Chr4:75010259-75010278 MsG0480022646.01.T01:intron 45.0%
! GAGCTATATCTTGGCTCTTG+GGG - Chr4:75010795-75010814 MsG0480022647.01.T01:intron 45.0%
! GTGAGGTTGCATGCTTTGTT+TGG - Chr4:75010626-75010645 MsG0480022647.01.T01:intron 45.0%
! TGGCCAAGTACTTTTGTGTG+AGG - Chr4:75010609-75010628 MsG0480022647.01.T01:intron 45.0%
! TTTCAAGCCCGTTTTCCAAC+CGG - Chr4:75007328-75007347 MsG0480022646.01.T01:intron 45.0%
!! GACCGTAAACTTGTTGATGC+AGG + Chr4:75010942-75010961 None:intergenic 45.0%
!! TAAAGTGCGGGTAATGGATG+CGG - Chr4:75006586-75006605 MsG0480022647.01.T01:three_prime_UTR 45.0%
!! TAACGGGCTTCGAGCTTTAT+CGG + Chr4:75007369-75007388 None:intergenic 45.0%
!!! GGTTGCTTTTGGTCTAAGCA+AGG - Chr4:75010280-75010299 MsG0480022646.01.T01:intron 45.0%
!!! AAAAAATGTAATTTTTAATA+CGG - Chr4:75007256-75007275 MsG0480022646.01.T01:CDS 5.0%
AACGGCATCAGAAGAGGTCA+GGG - Chr4:75010969-75010988 MsG0480022647.01.T01:intron 50.0%
ACGAACCATTTCCCCTTGAG+TGG - Chr4:75009911-75009930 MsG0480022646.01.T01:intron 50.0%
AGATGCTCACTCACAGTGAG+AGG + Chr4:75008382-75008401 None:intergenic 50.0%
AGTGCTAACGGCATCAGAAG+AGG - Chr4:75010963-75010982 MsG0480022647.01.T01:intron 50.0%
AGTTGTTACCCACGAGGGTA+CGG - Chr4:75006653-75006672 MsG0480022646.01.T01:exon 50.0%
ATATAGCTCTTGCACCGGAG+AGG + Chr4:75010784-75010803 None:intergenic 50.0%
ATCATGTGCGTTGTGCAGGA+GGG - Chr4:75008230-75008249 MsG0480022646.01.T01:intron 50.0%
ATGGTTCCAGTCCACTACCT+AGG - Chr4:75010993-75011012 MsG0480022647.01.T01:intron 50.0%
CAATCCTTCCATGGACCACT+AGG + Chr4:75007756-75007775 None:intergenic 50.0%
CAGGTTTCCTGCCTCAATAG+CGG + Chr4:75009559-75009578 None:intergenic 50.0%
CCCTGATAGCTCAACCGAAA+TGG + Chr4:75009730-75009749 None:intergenic 50.0%
CCGGTGCAAGAGCTATATCT+TGG - Chr4:75010786-75010805 MsG0480022647.01.T01:intron 50.0%
CGGTCTTAAACCGCACTTGA+AGG + Chr4:75008626-75008645 None:intergenic 50.0%
CTGTTCCACTCAAGGGGAAA+TGG + Chr4:75009919-75009938 None:intergenic 50.0%
GACAGCTCTACTCTATGGGT+AGG + Chr4:75006734-75006753 None:intergenic 50.0%
GACATTACCGATCGGAAACC+TGG - Chr4:75010450-75010469 MsG0480022647.01.T01:intron 50.0%
GAGATGTTGTGAAGCCAACG+AGG + Chr4:75009958-75009977 None:intergenic 50.0%
GATGCTCACTCACAGTGAGA+GGG + Chr4:75008381-75008400 None:intergenic 50.0%
GCAGCAGCGTATTTACAGAC+AGG - Chr4:75009122-75009141 MsG0480022646.01.T01:intron 50.0%
GCTTATACAGCCACATGACG+GGG + Chr4:75010871-75010890 None:intergenic 50.0%
GGATGGCAATGCGTACTCTA+TGG + Chr4:75007417-75007436 None:intergenic 50.0%
GGCATTATCCTAGTGGTCCA+TGG - Chr4:75007745-75007764 MsG0480022646.01.T01:CDS 50.0%
GTGCGGTGCATGCTTTGTAA+AGG + Chr4:75007466-75007485 None:intergenic 50.0%
GTGTCCTTCTCCATACCCTT+TGG + Chr4:75006630-75006649 None:intergenic 50.0%
TAAACTGAGTGAAGTCCCGG+TGG + Chr4:75007849-75007868 None:intergenic 50.0%
TAACGGCATCAGAAGAGGTC+AGG - Chr4:75010968-75010987 MsG0480022647.01.T01:intron 50.0%
TCGTTCATTTCCCCGTCATG+TGG - Chr4:75010858-75010877 MsG0480022647.01.T01:CDS 50.0%
TTGTCCATGACACAGGTGGA+TGG - Chr4:75010066-75010085 MsG0480022646.01.T01:intron 50.0%
! AACGGGCTTCGAGCTTTATC+GGG + Chr4:75007368-75007387 None:intergenic 50.0%
! CGTTTTCCAACCGGGCTTTT+TGG - Chr4:75007337-75007356 MsG0480022646.01.T01:intron 50.0%
! GCCTTTGGAAGTAGAAGAGG+TGG + Chr4:75008045-75008064 None:intergenic 50.0%
! GCTTCGAGCTTTATCGGGAT+GGG + Chr4:75007363-75007382 None:intergenic 50.0%
! GGAAGGGAGAAGCATATGTG+AGG + Chr4:75008015-75008034 None:intergenic 50.0%
! GTACCCAAAGGGTATGGAGA+AGG - Chr4:75006623-75006642 MsG0480022646.01.T01:exon 50.0%
! TCAAAATGGGCCGGCTCTAA+CGG + Chr4:75007386-75007405 None:intergenic 50.0%
! TTCAAGCCCGTTTTCCAACC+GGG - Chr4:75007329-75007348 MsG0480022646.01.T01:intron 50.0%
!! AAAGTGCGGGTAATGGATGC+GGG - Chr4:75006587-75006606 MsG0480022647.01.T01:three_prime_UTR 50.0%
!! TGCTTTGTTTGGTGCTGCAC+TGG - Chr4:75010637-75010656 MsG0480022647.01.T01:intron 50.0%
!!! TGCTGCACTGGCTTTTGGAT+TGG - Chr4:75010649-75010668 MsG0480022647.01.T01:intron 50.0%
!!! TTTGGTGCTGCACTGGCTTT+TGG - Chr4:75010644-75010663 MsG0480022647.01.T01:intron 50.0%
AAAAAGCCCGGTCCCCGTTA+GGG - Chr4:75006845-75006864 MsG0480022646.01.T01:exon 55.0%
AAACCCCGCTTTCATGGGTC+TGG - Chr4:75006227-75006246 MsG0480022647.01.T01:three_prime_UTR 55.0%
AACCCCGCTTTCATGGGTCT+GGG - Chr4:75006228-75006247 MsG0480022647.01.T01:three_prime_UTR 55.0%
AATGGGTATGGGCACGGGTA+AGG - Chr4:75006275-75006294 MsG0480022647.01.T01:three_prime_UTR 55.0%
ACGGCATCAGAAGAGGTCAG+GGG - Chr4:75010970-75010989 MsG0480022647.01.T01:intron 55.0%
AGGCATCATGTGCGTTGTGC+AGG - Chr4:75008226-75008245 MsG0480022646.01.T01:intron 55.0%
ATCGGGCTAAATGGGTCAGC+CGG + Chr4:75006760-75006779 None:intergenic 55.0%
CATCAGAAGAGGTCAGGGGA+TGG - Chr4:75010974-75010993 MsG0480022647.01.T01:intron 55.0%
CATCATGTGCGTTGTGCAGG+AGG - Chr4:75008229-75008248 MsG0480022646.01.T01:intron 55.0%
CGGTTGAGCTATCAGGGACT+GGG - Chr4:75009733-75009752 MsG0480022646.01.T01:intron 55.0%
GCCTTGCTCTCGGCTTCATT+GGG - Chr4:75009523-75009542 MsG0480022646.01.T01:CDS 55.0%
GGATGCGGGTATGGACACTT+AGG - Chr4:75006601-75006620 MsG0480022647.01.T01:three_prime_UTR 55.0%
GTCTCCATCCACCTGTGTCA+TGG + Chr4:75010073-75010092 None:intergenic 55.0%
GTTGGCCATGTGGCAATGAC+TGG - Chr4:75007610-75007629 MsG0480022646.01.T01:intron 55.0%
TAAAAAGCCCGGTCCCCGTT+AGG - Chr4:75006844-75006863 MsG0480022646.01.T01:exon 55.0%
TCATGTGCGTTGTGCAGGAG+GGG - Chr4:75008231-75008250 MsG0480022646.01.T01:intron 55.0%
TCGGCTTCATTGGGCTGACT+TGG - Chr4:75009532-75009551 MsG0480022646.01.T01:intron 55.0%
TCGGTTGAGCTATCAGGGAC+TGG - Chr4:75009732-75009751 MsG0480022646.01.T01:intron 55.0%
TGCCTTGCTCTCGGCTTCAT+TGG - Chr4:75009522-75009541 MsG0480022646.01.T01:CDS 55.0%
TGGCTCCAAGCCTTCAAGTG+CGG - Chr4:75008613-75008632 MsG0480022646.01.T01:intron 55.0%
TTGTGCAGGAGGGGCTGAAT+TGG - Chr4:75008240-75008259 MsG0480022646.01.T01:intron 55.0%
! AACGGGGACCGGGCTTTTTA+GGG + Chr4:75006844-75006863 None:intergenic 55.0%
! CAAAATGGGCCGGCTCTAAC+GGG + Chr4:75007385-75007404 None:intergenic 55.0%
! CGGCTTCATTGGGCTGACTT+GGG - Chr4:75009533-75009552 MsG0480022646.01.T01:intron 55.0%
! GGCTTCGAGCTTTATCGGGA+TGG + Chr4:75007364-75007383 None:intergenic 55.0%
! GTTGTTACCCACGAGGGTAC+GGG - Chr4:75006654-75006673 MsG0480022646.01.T01:exon 55.0%
! TAACGGGGACCGGGCTTTTT+AGG + Chr4:75006845-75006864 None:intergenic 55.0%
! TGGCACTGAAAGAGGTGCAG+AGG - Chr4:75010220-75010239 MsG0480022646.01.T01:intron 55.0%
!! AAAGCGCCTAGGTAGTGGAC+TGG + Chr4:75011002-75011021 None:intergenic 55.0%
ACTTGGGCCGCTATTGAGGC+AGG - Chr4:75009549-75009568 MsG0480022646.01.T01:intron 60.0%
AGCTCGAAGCCCGTTAGAGC+CGG - Chr4:75007373-75007392 MsG0480022646.01.T01:intron 60.0%
ATATGCGGGGTTGTGGGGCT+GGG + Chr4:75006312-75006331 None:intergenic 60.0%
CGCTTTCATGGGTCTGGGCA+CGG - Chr4:75006233-75006252 MsG0480022647.01.T01:three_prime_UTR 60.0%
CGTGCCCAGACCCATGAAAG+CGG + Chr4:75006235-75006254 None:intergenic 60.0%
GATGGGCCAAAAAGCCCGGT+TGG + Chr4:75007346-75007365 None:intergenic 60.0%
GCCCAATGAAGCCGAGAGCA+AGG + Chr4:75009527-75009546 None:intergenic 60.0%
GCTTTCATGGGTCTGGGCAC+GGG - Chr4:75006234-75006253 MsG0480022647.01.T01:three_prime_UTR 60.0%
GGGGTCCAGTCATTGCCACA+TGG + Chr4:75007618-75007637 None:intergenic 60.0%
GTGCCCAGACCCATGAAAGC+GGG + Chr4:75006234-75006253 None:intergenic 60.0%
TAGCCCGGCCCTAAAAAGCC+CGG - Chr4:75006833-75006852 MsG0480022646.01.T01:exon 60.0%
TATATGCGGGGTTGTGGGGC+TGG + Chr4:75006313-75006332 None:intergenic 60.0%
TCGGGATGGGCCAAAAAGCC+CGG + Chr4:75007350-75007369 None:intergenic 60.0%
TGCCCAGACCCATGAAAGCG+GGG + Chr4:75006233-75006252 None:intergenic 60.0%
!! GCGGGTAATGGATGCGGGTA+TGG - Chr4:75006592-75006611 MsG0480022647.01.T01:three_prime_UTR 60.0%
!! GCTGACTTGGGCCGCTATTG+AGG - Chr4:75009545-75009564 MsG0480022646.01.T01:intron 60.0%
ACTCGTGCCCGTACCCTCGT+GGG + Chr4:75006664-75006683 None:intergenic 65.0%
ATTAGCCCGCGGCCCGTGTA+GGG - Chr4:75007287-75007306 MsG0480022646.01.T01:CDS 65.0%
TACCCGAGCCAGGCCCTACA+CGG + Chr4:75007303-75007322 None:intergenic 65.0%
TACTCGTGCCCGTACCCTCG+TGG + Chr4:75006665-75006684 None:intergenic 65.0%
! CGAGGGTACGGGCACGAGTA+CGG - Chr4:75006665-75006684 MsG0480022646.01.T01:exon 65.0%
! GAGGGTACGGGCACGAGTAC+GGG - Chr4:75006666-75006685 MsG0480022646.01.T01:exon 65.0%
! TACACGGGCCGCGGGCTAAT+GGG + Chr4:75007287-75007306 None:intergenic 65.0%
!! CCCGTTAGGGCTAGCCCGAA+CGG - Chr4:75006858-75006877 MsG0480022646.01.T01:exon 65.0%
!! CCCGTTCGGGCTAGCCCTAA+CGG + Chr4:75006862-75006881 None:intergenic 65.0%
!! CCGTTAGGGCTAGCCCGAAC+GGG - Chr4:75006859-75006878 MsG0480022646.01.T01:exon 65.0%
!! CCGTTCGGGCTAGCCCTAAC+GGG + Chr4:75006861-75006880 None:intergenic 65.0%
!! CGTTCGGGCTAGCCCTAACG+GGG + Chr4:75006860-75006879 None:intergenic 65.0%
!!! GGACCGGGCTTTTTAGGGCC+GGG + Chr4:75006839-75006858 None:intergenic 65.0%
!!! GGGACCGGGCTTTTTAGGGC+CGG + Chr4:75006840-75006859 None:intergenic 65.0%
ACCCGAGCCAGGCCCTACAC+GGG + Chr4:75007302-75007321 None:intergenic 70.0%
CATTAGCCCGCGGCCCGTGT+AGG - Chr4:75007286-75007305 MsG0480022646.01.T01:CDS 70.0%
! CTACACGGGCCGCGGGCTAA+TGG + Chr4:75007288-75007307 None:intergenic 70.0%
! GGCTAGCCCTAACGGGGACC+GGG + Chr4:75006854-75006873 None:intergenic 70.0%
!! GGGCTAGCCCTAACGGGGAC+CGG + Chr4:75006855-75006874 None:intergenic 70.0%
!! GTGCGCTAACGGGCTACCCG+CGG + Chr4:75006885-75006904 None:intergenic 70.0%
GCCCGTGTAGGGCCTGGCTC+GGG - Chr4:75007298-75007317 MsG0480022646.01.T01:CDS 75.0%
GGCCCGTGTAGGGCCTGGCT+CGG - Chr4:75007297-75007316 MsG0480022646.01.T01:CDS 75.0%
! CCAGGCCCTACACGGGCCGC+GGG + Chr4:75007295-75007314 None:intergenic 80.0%
! CGGGCCGGCCCATTAGCCCG+CGG - Chr4:75007276-75007295 MsG0480022646.01.T01:CDS 80.0%
! CGGGCTACCCGCGGCCCGTT+CGG + Chr4:75006876-75006895 None:intergenic 80.0%
! GCCAGGCCCTACACGGGCCG+CGG + Chr4:75007296-75007315 None:intergenic 80.0%
! GGGCTACCCGCGGCCCGTTC+GGG + Chr4:75006875-75006894 None:intergenic 80.0%
!! CGGGCCGCGGGCTAATGGGC+CGG + Chr4:75007283-75007302 None:intergenic 80.0%
!! GGCTAGCCCGAACGGGCCGC+GGG - Chr4:75006866-75006885 MsG0480022646.01.T01:exon 80.0%
!!! GGGCTAGCCCGAACGGGCCG+CGG - Chr4:75006865-75006884 MsG0480022646.01.T01:exon 80.0%
! CCCGCGGCCCGTGTAGGGCC+TGG - Chr4:75007292-75007311 MsG0480022646.01.T01:CDS 85.0%
Chromosome Type Strat End Strand Name
Chr4 gene 75006215 75011315 75006215 ID=MsG0480022647.01;Name=MsG0480022647.01
Chr4 mRNA 75006215 75011315 75006215 ID=MsG0480022647.01.T01;Parent=MsG0480022647.01;Name=MsG0480022647.01.T01;_AED=0.54;_eAED=0.54;_QI=0|0|0.6|0.6|0.75|0.8|5|603|199
Chr4 exon 75006215 75006940 75006215 ID=MsG0480022647.01.T01:exon:31618;Parent=MsG0480022647.01.T01
Chr4 exon 75007208 75007318 75007208 ID=MsG0480022647.01.T01:exon:31617;Parent=MsG0480022647.01.T01
Chr4 exon 75009143 75009383 75009143 ID=MsG0480022647.01.T01:exon:31616;Parent=MsG0480022647.01.T01
Chr4 exon 75010824 75010907 75010824 ID=MsG0480022647.01.T01:exon:31615;Parent=MsG0480022647.01.T01
Chr4 exon 75011275 75011315 75011275 ID=MsG0480022647.01.T01:exon:31614;Parent=MsG0480022647.01.T01
Chr4 CDS 75011275 75011315 75011275 ID=MsG0480022647.01.T01:cds;Parent=MsG0480022647.01.T01
Chr4 CDS 75010824 75010907 75010824 ID=MsG0480022647.01.T01:cds;Parent=MsG0480022647.01.T01
Chr4 CDS 75009143 75009383 75009143 ID=MsG0480022647.01.T01:cds;Parent=MsG0480022647.01.T01
Chr4 CDS 75007208 75007318 75007208 ID=MsG0480022647.01.T01:cds;Parent=MsG0480022647.01.T01
Chr4 CDS 75006818 75006940 75006818 ID=MsG0480022647.01.T01:cds;Parent=MsG0480022647.01.T01
Chr4 three_prime_UTR 75006215 75006817 75006215 ID=MsG0480022647.01.T01:three_prime_utr;Parent=MsG0480022647.01.T01
Gene Sequence

>MsG0480022647.01.T01

ATGGGTAAGGTAAAACCCCGCTTTCATGGGTCTGGGCACGGGTACCCAAAGGGTATGGAGAAGGACACTAAAGTTGTTACCCACGAGGGTACGGGCACGAGTACGGGTATTTTTTACAAATACGGGTGTCATGTAGTTTCCAAAAGTTTAAAATGTAGTGGTAGTGTGGAAAAAGTATTCCATAGGAGATTTCAAGTTCAAAGAAGGCATCATGTGCGTTGTGCAGGAGGGGCTGAATTGGCTTCTTCTTCTAGTTCCAGCATTGAAAATGTTGGAGAGGAAATTCAAGAGGATATTTCAATGGAAACATTGATTTGGAGGGCTATCAAGTTACCTATTTACTCTGTTGCTTTGGTCCCTCTCACTGTTAGACTTGGCACTGAAAGAGGTGCAGAGGTAGTGAAAGTAGCAGTCTTGTCGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAAGCAAGGCACTTCCTCTCACTTGTATTGACAAAGATAAGATTTTCATGGCCAAGTACTTTTGTGTGAGGTTGCATGCTTTGTTTGGTGCTGCACTGGCTTTTGGATTGGTATTGGCTAGAATGGTTAACAGAAAGCTACTACTCCAATGA

Protein sequence

>MsG0480022647.01.T01

MGKVKPRFHGSGHGYPKGMEKDTKVVTHEGTGTSTGIFYKYGCHVVSKSLKCSGSVEKVFHRRFQVQRRHHVRCAGGAELASSSSSSIENVGEEIQEDISMETLIWRAIKLPIYSVALVPLTVRLGTERGAEVVKVAVLSLYALLVAFGLSKALPLTCIDKDKIFMAKYFCVRLHALFGAALAFGLVLARMVNRKLLLQ*