Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044524.01.T01 | XP_013445572.1 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 1.22E-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044524.01.T01 | O96860 | 55.556 | 90 | 38 | 1 | 1 | 90 | 1 | 88 | 5.91E-29 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044524.01.T01 | A0A072TRW8 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 5.80e-73 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048016.01 | MsG0880044524.01 | 0.822958 | 1.793190e-53 | 1.523231e-50 |
| MsG0080048802.01 | MsG0880044524.01 | 0.841222 | 5.417783e-58 | 7.906419e-55 |
| MsG0080048849.01 | MsG0880044524.01 | 0.814433 | 1.544172e-51 | 1.036042e-48 |
| MsG0080048938.01 | MsG0880044524.01 | 0.808138 | 3.587755e-50 | 2.035313e-47 |
| MsG0080049029.01 | MsG0880044524.01 | 0.810769 | 9.777117e-51 | 5.945903e-48 |
| MsG0080049040.01 | MsG0880044524.01 | 0.836064 | 1.164759e-56 | 1.451425e-53 |
| MsG0080049068.01 | MsG0880044524.01 | 0.844714 | 6.372597e-59 | 1.037773e-55 |
| MsG0080049069.01 | MsG0880044524.01 | 0.851711 | 7.428948e-61 | 1.516843e-57 |
| MsG0180000113.01 | MsG0880044524.01 | 0.834549 | 2.810171e-56 | 3.346233e-53 |
| MsG0180000246.01 | MsG0880044524.01 | 0.845422 | 4.102753e-59 | 6.833524e-56 |
| MsG0180000509.01 | MsG0880044524.01 | 0.817161 | 3.807115e-52 | 2.751608e-49 |
| MsG0180000599.01 | MsG0880044524.01 | 0.811793 | 5.860357e-51 | 3.661774e-48 |
| MsG0180000670.01 | MsG0880044524.01 | 0.804802 | 1.813753e-49 | 9.440403e-47 |
| MsG0180001100.01 | MsG0880044524.01 | 0.812379 | 4.367533e-51 | 2.772580e-48 |
| MsG0180001270.01 | MsG0880044524.01 | 0.833524 | 5.076951e-56 | 5.861889e-53 |
| MsG0180002700.01 | MsG0880044524.01 | 0.839333 | 1.686765e-57 | 2.321983e-54 |
| MsG0880044523.01 | MsG0880044524.01 | 0.934396 | 4.311139e-96 | 3.250699e-91 |
| MsG0880044524.01 | MsG0880044564.01 | 0.934937 | 1.857878e-96 | 1.451933e-91 |
| MsG0880044524.01 | MsG0880045044.01 | 0.809865 | 1.531612e-50 | 9.094945e-48 |
| MsG0880044524.01 | MsG0880045285.01 | 0.801781 | 7.657211e-49 | 3.688586e-46 |
| MsG0880044524.01 | MsG0880045558.01 | 0.802425 | 5.645949e-49 | 2.764849e-46 |
| MsG0880044524.01 | MsG0880046334.01 | -0.806650 | 7.422120e-50 | 4.050065e-47 |
| MsG0880044524.01 | MsG0880046765.01 | 0.819489 | 1.130950e-52 | 8.715482e-50 |
| MsG0880044524.01 | MsG0880046867.01 | 0.824116 | 9.609519e-54 | 8.433694e-51 |
| MsG0880044524.01 | MsG0880047152.01 | 0.841981 | 3.415732e-58 | 5.105118e-55 |
| MsG0880044524.01 | MsG0880047451.01 | 0.835079 | 2.067955e-56 | 2.501419e-53 |
| MsG0880044524.01 | MsG0880047614.01 | 0.805265 | 1.451305e-49 | 7.643735e-47 |
| MsG0880044524.01 | MsG0880047656.01 | 0.814229 | 1.713897e-51 | 1.143480e-48 |
| MsG0880044524.01 | MsG0880047703.01 | 0.807150 | 5.818188e-50 | 3.216389e-47 |
| MsG0180003821.01 | MsG0880044524.01 | 0.824847 | 6.464446e-54 | 5.794130e-51 |
| MsG0180003942.01 | MsG0880044524.01 | -0.820397 | 7.010543e-53 | 5.541066e-50 |
| MsG0180004276.01 | MsG0880044524.01 | 0.802738 | 4.864240e-49 | 2.401120e-46 |
| MsG0180004448.01 | MsG0880044524.01 | 0.848137 | 7.421430e-60 | 1.348583e-56 |
| MsG0180004545.01 | MsG0880044524.01 | 0.804381 | 2.220360e-49 | 1.143151e-46 |
| MsG0180004735.01 | MsG0880044524.01 | 0.819758 | 9.815925e-53 | 7.621755e-50 |
| MsG0180005184.01 | MsG0880044524.01 | 0.822318 | 2.525604e-53 | 2.106749e-50 |
| MsG0180005339.01 | MsG0880044524.01 | 0.834735 | 2.523529e-56 | 3.021063e-53 |
| MsG0180005391.01 | MsG0880044524.01 | 0.844184 | 8.848715e-59 | 1.417297e-55 |
| MsG0180005418.01 | MsG0880044524.01 | 0.856908 | 2.339751e-62 | 5.672282e-59 |
| MsG0180005964.01 | MsG0880044524.01 | 0.824702 | 6.995880e-54 | 6.244614e-51 |
| MsG0780040284.01 | MsG0880044524.01 | 0.802709 | 4.931626e-49 | 2.432566e-46 |
| MsG0780041159.01 | MsG0880044524.01 | 0.824887 | 6.327667e-54 | 5.678249e-51 |
| MsG0780041729.01 | MsG0880044524.01 | -0.819052 | 1.422172e-52 | 1.082773e-49 |
| MsG0780041747.01 | MsG0880044524.01 | 0.812265 | 4.624073e-51 | 2.926518e-48 |
| MsG0880042987.01 | MsG0880044524.01 | -0.813501 | 2.478957e-51 | 1.621708e-48 |
| MsG0880043024.01 | MsG0880044524.01 | 0.800124 | 1.669871e-48 | 7.713592e-46 |
| MsG0880043029.01 | MsG0880044524.01 | 0.800236 | 1.584411e-48 | 7.339645e-46 |
| MsG0880043107.01 | MsG0880044524.01 | 0.800790 | 1.221607e-48 | 5.738909e-46 |
| MsG0880043829.01 | MsG0880044524.01 | 0.830731 | 2.489941e-55 | 2.646098e-52 |
| MsG0280010564.01 | MsG0880044524.01 | 0.852944 | 3.309654e-61 | 7.032439e-58 |
| MsG0280010728.01 | MsG0880044524.01 | 0.804236 | 2.379967e-49 | 1.220701e-46 |
| MsG0280010985.01 | MsG0880044524.01 | 0.814048 | 1.878265e-51 | 1.247029e-48 |
| MsG0280011073.01 | MsG0880044524.01 | 0.867315 | 1.498098e-65 | 5.208175e-62 |
| MsG0280011180.01 | MsG0880044524.01 | 0.821149 | 4.708564e-53 | 3.800024e-50 |
| MsG0380011656.01 | MsG0880044524.01 | 0.805010 | 1.640570e-49 | 8.584565e-47 |
| MsG0380012868.01 | MsG0880044524.01 | 0.858442 | 8.215757e-63 | 2.097040e-59 |
| MsG0380014584.01 | MsG0880044524.01 | 0.804079 | 2.565707e-49 | 1.310787e-46 |
| MsG0380014588.01 | MsG0880044524.01 | 0.807473 | 4.969274e-50 | 2.770396e-47 |
| MsG0680030764.01 | MsG0880044524.01 | 0.802062 | 6.705003e-49 | 3.253108e-46 |
| MsG0680030858.01 | MsG0880044524.01 | 0.810244 | 1.269180e-50 | 7.611551e-48 |
| MsG0680031469.01 | MsG0880044524.01 | 0.827234 | 1.750640e-54 | 1.680098e-51 |
| MsG0680032006.01 | MsG0880044524.01 | 0.811864 | 5.657307e-51 | 3.541469e-48 |
| MsG0680032413.01 | MsG0880044524.01 | 0.823533 | 1.316237e-53 | 1.136340e-50 |
| MsG0680032516.01 | MsG0880044524.01 | 0.802861 | 4.588555e-49 | 2.272083e-46 |
| MsG0680032830.01 | MsG0880044524.01 | 0.821025 | 5.028661e-53 | 4.044773e-50 |
| MsG0680032850.01 | MsG0880044524.01 | 0.854262 | 1.384125e-61 | 3.073727e-58 |
| MsG0680033377.01 | MsG0880044524.01 | 0.831173 | 1.940000e-55 | 2.088676e-52 |
| MsG0680034064.01 | MsG0880044524.01 | 0.826960 | 2.036600e-54 | 1.938937e-51 |
| MsG0480018644.01 | MsG0880044524.01 | 0.830459 | 2.902425e-55 | 3.059453e-52 |
| MsG0480018847.01 | MsG0880044524.01 | 0.804223 | 2.394558e-49 | 1.227786e-46 |
| MsG0480018848.01 | MsG0880044524.01 | 0.817151 | 3.826228e-52 | 2.764672e-49 |
| MsG0480018911.01 | MsG0880044524.01 | 0.833439 | 5.329111e-56 | 6.137576e-53 |
| MsG0480019007.01 | MsG0880044524.01 | 0.819115 | 1.376099e-52 | 1.049510e-49 |
| MsG0480019971.01 | MsG0880044524.01 | 0.817874 | 2.629568e-52 | 1.938037e-49 |
| MsG0480020690.01 | MsG0880044524.01 | 0.822830 | 1.920388e-53 | 1.625491e-50 |
| MsG0480021168.01 | MsG0880044524.01 | 0.802647 | 5.079610e-49 | 2.501488e-46 |
| MsG0480021377.01 | MsG0880044524.01 | 0.812472 | 4.167914e-51 | 2.652573e-48 |
| MsG0480021776.01 | MsG0880044524.01 | -0.823925 | 1.065076e-53 | 9.298004e-51 |
| MsG0480021783.01 | MsG0880044524.01 | 0.812049 | 5.153557e-51 | 3.242328e-48 |
| MsG0480021817.01 | MsG0880044524.01 | 0.808703 | 2.718369e-50 | 1.565049e-47 |
| MsG0480022155.01 | MsG0880044524.01 | 0.830792 | 2.405547e-55 | 2.560980e-52 |
| MsG0480022162.01 | MsG0880044524.01 | 0.803965 | 2.710042e-49 | 1.380459e-46 |
| MsG0480022239.01 | MsG0880044524.01 | 0.894079 | 3.453357e-75 | 3.382445e-71 |
| MsG0480022240.01 | MsG0880044524.01 | 0.821440 | 4.032726e-53 | 3.280992e-50 |
| MsG0480022243.01 | MsG0880044524.01 | 0.836497 | 9.038883e-57 | 1.141066e-53 |
| MsG0480022245.01 | MsG0880044524.01 | 0.851723 | 7.372453e-61 | 1.505900e-57 |
| MsG0480022246.01 | MsG0880044524.01 | 0.811294 | 7.522232e-51 | 4.638449e-48 |
| MsG0480022248.01 | MsG0880044524.01 | 0.851417 | 8.994465e-61 | 1.819484e-57 |
| MsG0480022401.01 | MsG0880044524.01 | 0.834223 | 3.393563e-56 | 4.001141e-53 |
| MsG0480022647.01 | MsG0880044524.01 | 0.821320 | 4.299425e-53 | 3.486286e-50 |
| MsG0480023384.01 | MsG0880044524.01 | 0.822674 | 2.087970e-53 | 1.759474e-50 |
| MsG0480023406.01 | MsG0880044524.01 | 0.814236 | 1.707185e-51 | 1.139270e-48 |
| MsG0480023652.01 | MsG0880044524.01 | 0.810092 | 1.368782e-50 | 8.176078e-48 |
| MsG0480023974.01 | MsG0880044524.01 | -0.807563 | 4.754273e-50 | 2.656600e-47 |
| MsG0580024285.01 | MsG0880044524.01 | 0.815169 | 1.061079e-51 | 7.261303e-49 |
| MsG0580024598.01 | MsG0880044524.01 | 0.805690 | 1.181997e-49 | 6.294334e-47 |
| MsG0580024601.01 | MsG0880044524.01 | 0.804621 | 1.978843e-49 | 1.025090e-46 |
| MsG0580024873.01 | MsG0880044524.01 | 0.825842 | 3.760218e-54 | 3.467312e-51 |
| MsG0580024930.01 | MsG0880044524.01 | -0.819748 | 9.866431e-53 | 7.658705e-50 |
| MsG0580025366.01 | MsG0880044524.01 | 0.806979 | 6.322908e-50 | 3.479970e-47 |
| MsG0580025502.01 | MsG0880044524.01 | 0.813056 | 3.105434e-51 | 2.006935e-48 |
| MsG0580025627.01 | MsG0880044524.01 | 0.805129 | 1.549659e-49 | 8.133810e-47 |
| MsG0580025906.01 | MsG0880044524.01 | 0.808289 | 3.331894e-50 | 1.897714e-47 |
| MsG0580025971.01 | MsG0880044524.01 | 0.809357 | 1.969633e-50 | 1.153996e-47 |
| MsG0380015024.01 | MsG0880044524.01 | 0.812556 | 3.995781e-51 | 2.548513e-48 |
| MsG0380015438.01 | MsG0880044524.01 | 0.840334 | 9.258569e-58 | 1.314469e-54 |
| MsG0380015547.01 | MsG0880044524.01 | 0.810409 | 1.169511e-50 | 7.043893e-48 |
| MsG0380015847.01 | MsG0880044524.01 | -0.814932 | 1.197234e-51 | 8.140867e-49 |
| MsG0380016057.01 | MsG0880044524.01 | 0.830801 | 2.392817e-55 | 2.548169e-52 |
| MsG0380016194.01 | MsG0880044524.01 | 0.852215 | 5.344218e-61 | 1.108840e-57 |
| MsG0380016284.01 | MsG0880044524.01 | 0.817304 | 3.534404e-52 | 2.564450e-49 |
| MsG0380017338.01 | MsG0880044524.01 | 0.827624 | 1.411796e-54 | 1.370152e-51 |
| MsG0380017728.01 | MsG0880044524.01 | 0.803511 | 3.365866e-49 | 1.694694e-46 |
| MsG0480018402.01 | MsG0880044524.01 | 0.810935 | 9.001846e-51 | 5.499091e-48 |
| MsG0580026206.01 | MsG0880044524.01 | 0.813783 | 2.148642e-51 | 1.416329e-48 |
| MsG0580027103.01 | MsG0880044524.01 | 0.811964 | 5.378144e-51 | 3.375915e-48 |
| MsG0580027394.01 | MsG0880044524.01 | 0.803635 | 3.173180e-49 | 1.602669e-46 |
| MsG0580028024.01 | MsG0880044524.01 | 0.846394 | 2.232259e-59 | 3.836947e-56 |
| MsG0580028033.01 | MsG0880044524.01 | 0.815250 | 1.017864e-51 | 6.981152e-49 |
| MsG0580029312.01 | MsG0880044524.01 | 0.843267 | 1.556018e-58 | 2.421575e-55 |
| MsG0580029325.01 | MsG0880044524.01 | 0.844220 | 8.652679e-59 | 1.387424e-55 |
| MsG0580029734.01 | MsG0880044524.01 | 0.837843 | 4.091124e-57 | 5.381391e-54 |
| MsG0580029912.01 | MsG0880044524.01 | 0.861896 | 7.432568e-64 | 2.135570e-60 |
| MsG0580029914.01 | MsG0880044524.01 | 0.822045 | 2.921540e-53 | 2.417968e-50 |
| MsG0680030464.01 | MsG0880044524.01 | 0.827601 | 1.429478e-54 | 1.386441e-51 |
| MsG0680030555.01 | MsG0880044524.01 | 0.813561 | 2.404833e-51 | 1.575680e-48 |
| MsG0280007062.01 | MsG0880044524.01 | 0.816763 | 4.677306e-52 | 3.343837e-49 |
| MsG0280008098.01 | MsG0880044524.01 | 0.821383 | 4.157965e-53 | 3.377490e-50 |
| MsG0280008223.01 | MsG0880044524.01 | 0.828561 | 8.396841e-55 | 8.376099e-52 |
| MsG0280008419.01 | MsG0880044524.01 | 0.833150 | 6.292414e-56 | 7.184565e-53 |
| MsG0280008928.01 | MsG0880044524.01 | 0.852029 | 6.034840e-61 | 1.244668e-57 |
| MsG0280008929.01 | MsG0880044524.01 | 0.870771 | 1.134422e-66 | 4.465950e-63 |
| MsG0280009685.01 | MsG0880044524.01 | 0.847976 | 8.221827e-60 | 1.486553e-56 |
| MsG0280009708.01 | MsG0880044524.01 | 0.818622 | 1.780281e-52 | 1.339324e-49 |
| MsG0280009756.01 | MsG0880044524.01 | 0.821899 | 3.158339e-53 | 2.603264e-50 |
| MsG0280010271.01 | MsG0880044524.01 | 0.816804 | 4.578616e-52 | 3.276908e-49 |
| MsG0280010353.01 | MsG0880044524.01 | 0.813018 | 3.165235e-51 | 2.043549e-48 |
| MsG0680035731.01 | MsG0880044524.01 | 0.802368 | 5.799946e-49 | 2.836166e-46 |
| MsG0780035960.01 | MsG0880044524.01 | 0.811040 | 8.538601e-51 | 5.230531e-48 |
| MsG0780036071.01 | MsG0880044524.01 | 0.803656 | 3.142047e-49 | 1.587752e-46 |
| MsG0780036263.01 | MsG0880044524.01 | 0.811425 | 7.045085e-51 | 4.359658e-48 |
| MsG0780036362.01 | MsG0880044524.01 | 0.839078 | 1.964423e-57 | 2.682963e-54 |
| MsG0780036792.01 | MsG0880044524.01 | 0.804458 | 2.139741e-49 | 1.103808e-46 |
| MsG0780037330.01 | MsG0880044524.01 | 0.845264 | 4.526097e-59 | 7.501024e-56 |
| MsG0780037363.01 | MsG0880044524.01 | 0.815969 | 7.038893e-52 | 4.924128e-49 |
| MsG0780037399.01 | MsG0880044524.01 | 0.815375 | 9.549351e-52 | 6.572297e-49 |
| MsG0780037662.01 | MsG0880044524.01 | 0.862137 | 6.267936e-64 | 1.816340e-60 |
| MsG0780037701.01 | MsG0880044524.01 | 0.854122 | 1.518868e-61 | 3.357672e-58 |
| MsG0780039964.01 | MsG0880044524.01 | 0.843208 | 1.614161e-58 | 2.507032e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880044524.01 | MsG0680035693.01 | PPI |
| MsG0880044524.01 | MsG0680035693.01 | PPI |
| MsG0880047062.01 | MsG0880044524.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044524.01.T01 | MTR_8g464690 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 1.47e-76 | 221 |
| MsG0880044524.01.T01 | MTR_6g087770 | 51.087 | 92 | 45 | 0 | 1 | 92 | 1 | 92 | 4.21e-30 | 103 |
| MsG0880044524.01.T01 | MTR_2g101850 | 55.556 | 90 | 40 | 0 | 1 | 90 | 1 | 90 | 2.05e-29 | 101 |
| MsG0880044524.01.T01 | MTR_4g120150 | 48.837 | 86 | 42 | 1 | 5 | 90 | 46 | 129 | 8.21e-26 | 94.0 |
| MsG0880044524.01.T01 | MTR_4g114060 | 49.367 | 79 | 40 | 0 | 11 | 89 | 159 | 237 | 1.20e-21 | 85.9 |
| MsG0880044524.01.T01 | MTR_8g104900 | 45.882 | 85 | 44 | 1 | 12 | 94 | 45 | 129 | 4.23e-19 | 76.6 |
| MsG0880044524.01.T01 | MTR_1g031880 | 43.529 | 85 | 46 | 1 | 12 | 94 | 59 | 143 | 7.50e-19 | 76.6 |
| MsG0880044524.01.T01 | MTR_4g107350 | 50.633 | 79 | 38 | 1 | 12 | 89 | 222 | 300 | 3.48e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044524.01.T01 | AT4G27360 | 70.874 | 103 | 30 | 0 | 1 | 103 | 1 | 103 | 1.33e-49 | 153 |
| MsG0880044524.01.T01 | AT3G16120 | 55.435 | 92 | 41 | 0 | 1 | 92 | 1 | 92 | 8.80e-33 | 110 |
| MsG0880044524.01.T01 | AT3G16120 | 55.435 | 92 | 41 | 0 | 1 | 92 | 1 | 92 | 8.80e-33 | 110 |
| MsG0880044524.01.T01 | AT1G52245 | 51.064 | 94 | 46 | 0 | 1 | 94 | 1 | 94 | 4.11e-30 | 103 |
| MsG0880044524.01.T01 | AT4G15930 | 49.412 | 85 | 41 | 1 | 5 | 89 | 39 | 121 | 7.44e-24 | 88.6 |
| MsG0880044524.01.T01 | AT5G20110 | 46.988 | 83 | 44 | 0 | 12 | 94 | 123 | 205 | 5.24e-21 | 83.6 |
| MsG0880044524.01.T01 | AT1G23220 | 39.773 | 88 | 52 | 1 | 8 | 94 | 38 | 125 | 5.70e-18 | 73.9 |
| MsG0880044524.01.T01 | AT4G15930 | 49.180 | 61 | 29 | 1 | 5 | 65 | 39 | 97 | 1.87e-13 | 61.2 |
Find 22 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTGTAGGCACTGATTT+TGG | 0.221609 | 8:+43819940 | MsG0880044524.01.T01:CDS |
| CAGGAATTTGATAGGGTTCA+TGG | 0.298316 | 8:+43819904 | MsG0880044524.01.T01:intron |
| CAGTTACATCATAGAAATCT+AGG | 0.300776 | 8:-43819759 | None:intergenic |
| AATTATTGCAGGAATTTGAT+AGG | 0.304941 | 8:+43819896 | MsG0880044524.01.T01:intron |
| ATCATAGAAATCTAGGGCTT+TGG | 0.353606 | 8:-43819752 | None:intergenic |
| CTTCAATTCATCATGCTAGA+AGG | 0.354098 | 8:+43819664 | None:intergenic |
| TTGCTCTTTAAGGGATCTGC+TGG | 0.420352 | 8:+43820024 | MsG0880044524.01.T01:CDS |
| CCTGGTTGGCAATGCATTGT+AGG | 0.440795 | 8:+43819928 | MsG0880044524.01.T01:CDS |
| CTAGAAGGCAAGGCAGTGAT+TGG | 0.481296 | 8:+43819679 | MsG0880044524.01.T01:CDS |
| CCTACAATGCATTGCCAACC+AGG | 0.504627 | 8:-43819928 | None:intergenic |
| AAATCAGTTCTCAGCAATAG+AGG | 0.512873 | 8:+43820062 | MsG0880044524.01.T01:CDS |
| TATAGCTCGATTTATAAAGA+AGG | 0.514762 | 8:+43819792 | MsG0880044524.01.T01:CDS |
| TTTGATAGGGTTCATGGACC+TGG | 0.522418 | 8:+43819910 | MsG0880044524.01.T01:CDS |
| ATTATTGCAGGAATTTGATA+GGG | 0.524356 | 8:+43819897 | MsG0880044524.01.T01:intron |
| TATAAATCGAGCTATATCAA+TGG | 0.561045 | 8:-43819785 | None:intergenic |
| ATCTGCTGGTCCACAAGCAG+AGG | 0.571115 | 8:+43820038 | MsG0880044524.01.T01:CDS |
| ATTCATCATGCTAGAAGGCA+AGG | 0.581622 | 8:+43819669 | None:intergenic |
| TCCTTTGTGACACATTGTAG+TGG | 0.583602 | 8:+43819964 | MsG0880044524.01.T01:CDS |
| AGTTACATCATAGAAATCTA+GGG | 0.585718 | 8:-43819758 | None:intergenic |
| ATAGGGTTCATGGACCTGGT+TGG | 0.594187 | 8:+43819914 | MsG0880044524.01.T01:CDS |
| GCCACTACAATGTGTCACAA+AGG | 0.659746 | 8:-43819965 | None:intergenic |
| AGATTTCTATGATGTAACTG+AGG | 0.680263 | 8:+43819762 | MsG0880044524.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTAATAAAATAAAACTAAG+AGG | + | Chr8:43819813-43819832 | MsG0880044524.01.T01:intron | 20.0% |
| ! | AAACTAAGAGGATTGTTTAT+TGG | + | Chr8:43819825-43819844 | MsG0880044524.01.T01:intron | 25.0% |
| ! | AATTATTGCAGGAATTTGAT+AGG | + | Chr8:43819896-43819915 | MsG0880044524.01.T01:intron | 25.0% |
| ! | AGTTACATCATAGAAATCTA+GGG | - | Chr8:43819761-43819780 | None:intergenic | 25.0% |
| ! | ATGTGTTAGTTAATTATTGC+AGG | + | Chr8:43819885-43819904 | MsG0880044524.01.T01:intron | 25.0% |
| ! | ATTATTGCAGGAATTTGATA+GGG | + | Chr8:43819897-43819916 | MsG0880044524.01.T01:intron | 25.0% |
| ! | TATAAATCGAGCTATATCAA+TGG | - | Chr8:43819788-43819807 | None:intergenic | 25.0% |
| ! | TATAGCTCGATTTATAAAGA+AGG | + | Chr8:43819792-43819811 | MsG0880044524.01.T01:CDS | 25.0% |
| !!! | CTATTTTTGTATAGGTAGTA+TGG | + | Chr8:43819996-43820015 | MsG0880044524.01.T01:CDS | 25.0% |
| !!! | TGCTTCATCTATTTTTGTAT+AGG | + | Chr8:43819988-43820007 | MsG0880044524.01.T01:CDS | 25.0% |
| AGATTTCTATGATGTAACTG+AGG | + | Chr8:43819762-43819781 | MsG0880044524.01.T01:CDS | 30.0% | |
| CAGTTACATCATAGAAATCT+AGG | - | Chr8:43819762-43819781 | None:intergenic | 30.0% | |
| ! | ATGGCAATTTTGCTCTTTAA+GGG | + | Chr8:43820015-43820034 | MsG0880044524.01.T01:CDS | 30.0% |
| ! | TATGGCAATTTTGCTCTTTA+AGG | + | Chr8:43820014-43820033 | MsG0880044524.01.T01:CDS | 30.0% |
| AAATCAGTTCTCAGCAATAG+AGG | + | Chr8:43820062-43820081 | MsG0880044524.01.T01:CDS | 35.0% | |
| ! | ATCATAGAAATCTAGGGCTT+TGG | - | Chr8:43819755-43819774 | None:intergenic | 35.0% |
| CAGGAATTTGATAGGGTTCA+TGG | + | Chr8:43819904-43819923 | MsG0880044524.01.T01:intron | 40.0% | |
| TCCTTTGTGACACATTGTAG+TGG | + | Chr8:43819964-43819983 | MsG0880044524.01.T01:CDS | 40.0% | |
| !! | AACTGATTTTCCTCTGCTTG+TGG | - | Chr8:43820051-43820070 | None:intergenic | 40.0% |
| !!! | TGCATTGTAGGCACTGATTT+TGG | + | Chr8:43819940-43819959 | MsG0880044524.01.T01:CDS | 40.0% |
| GCCACTACAATGTGTCACAA+AGG | - | Chr8:43819968-43819987 | None:intergenic | 45.0% | |
| TTTGATAGGGTTCATGGACC+TGG | + | Chr8:43819910-43819929 | MsG0880044524.01.T01:CDS | 45.0% | |
| ! | TTGCTCTTTAAGGGATCTGC+TGG | + | Chr8:43820024-43820043 | MsG0880044524.01.T01:CDS | 45.0% |
| ATAGGGTTCATGGACCTGGT+TGG | + | Chr8:43819914-43819933 | MsG0880044524.01.T01:CDS | 50.0% | |
| CCTACAATGCATTGCCAACC+AGG | - | Chr8:43819931-43819950 | None:intergenic | 50.0% | |
| CCTGGTTGGCAATGCATTGT+AGG | + | Chr8:43819928-43819947 | MsG0880044524.01.T01:CDS | 50.0% | |
| CTAGAAGGCAAGGCAGTGAT+TGG | + | Chr8:43819679-43819698 | MsG0880044524.01.T01:CDS | 50.0% | |
| ATCTGCTGGTCCACAAGCAG+AGG | + | Chr8:43820038-43820057 | MsG0880044524.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 43819676 | 43820098 | 43819676 | ID=MsG0880044524.01;Name=MsG0880044524.01 |
| Chr8 | mRNA | 43819676 | 43820098 | 43819676 | ID=MsG0880044524.01.T01;Parent=MsG0880044524.01;Name=MsG0880044524.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|109 |
| Chr8 | exon | 43819676 | 43819813 | 43819676 | ID=MsG0880044524.01.T01:exon:16317;Parent=MsG0880044524.01.T01 |
| Chr8 | exon | 43819907 | 43820098 | 43819907 | ID=MsG0880044524.01.T01:exon:16316;Parent=MsG0880044524.01.T01 |
| Chr8 | CDS | 43819676 | 43819813 | 43819676 | ID=MsG0880044524.01.T01:cds;Parent=MsG0880044524.01.T01 |
| Chr8 | CDS | 43819907 | 43820098 | 43819907 | ID=MsG0880044524.01.T01:cds;Parent=MsG0880044524.01.T01 |
| Gene Sequence |
| Protein sequence |
