AlfalfaGEDB | MsG0580029734.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029734.01

KEGG: -
GO: GO:0005515
PFAM: PF01535 PF12854 PF13041

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029734.01.T01	XP_003617444.1	94.834	542	25	1	1	539	1	542	0	1059

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029734.01.T01	Q9SJG6	56.226	530	223	4	4	531	6	528	0	603

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029734.01.T01	G7K3C5	94.834	542	25	1	1	539	1	542	0.0	1059

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048065.01	MsG0580029734.01	0.810344	1.207739e-50	7.261894e-48
MsG0080048727.01	MsG0580029734.01	0.880683	4.486837e-70	2.553408e-66
MsG0080048748.01	MsG0580029734.01	0.882352	1.119599e-70	6.797661e-67
MsG0080048773.01	MsG0580029734.01	0.882044	1.448663e-70	8.690338e-67
MsG0080048780.01	MsG0580029734.01	0.848141	7.402386e-60	1.345281e-56
MsG0080048801.01	MsG0580029734.01	0.832749	7.915115e-56	8.929212e-53
MsG0080048802.01	MsG0580029734.01	0.874419	6.855131e-68	3.083702e-64
MsG0080048820.01	MsG0580029734.01	0.852007	6.122365e-61	1.261683e-57
MsG0080048845.01	MsG0580029734.01	0.853598	2.149935e-61	4.670586e-58
MsG0080048849.01	MsG0580029734.01	0.892424	1.607739e-74	1.468968e-70

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PPI

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Gene1	Gene2	Type
MsG0180004449.01	MsG0580029734.01	PPI
MsG0580029734.01	MsG0880046460.01	PPI
MsG0580029734.01	MsG0480019850.01	PPI
MsG0580029734.01	MsG0480018198.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029734.01.T01	MTR_5g091640	94.834	542	25	1	1	539	1	542	0.0	1059
MsG0580029734.01.T01	MTR_3g052720	40.881	477	276	3	56	532	241	711	1.12e-125	395
MsG0580029734.01.T01	MTR_3g052720	26.609	575	310	15	35	510	54	615	9.10e-49	182
MsG0580029734.01.T01	MTR_5g020650	36.454	502	313	3	31	531	17	513	2.65e-119	362
MsG0580029734.01.T01	MTR_3g109380	37.549	506	306	5	28	530	14	512	7.22e-119	361
MsG0580029734.01.T01	MTR_1g114220	35.878	524	316	7	16	531	6	517	1.81e-115	353
MsG0580029734.01.T01	MTR_7g032360	36.863	510	291	9	28	516	22	521	7.85e-114	348
MsG0580029734.01.T01	MTR_4g095065	36.739	509	308	6	28	532	27	525	2.16e-113	350
MsG0580029734.01.T01	MTR_5g043780	37.331	517	309	7	23	530	4	514	5.45e-113	345
MsG0580029734.01.T01	MTR_4g108890	35.755	523	323	7	15	530	7	523	6.80e-112	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029734.01.T01	AT2G42920	56.226	530	223	4	4	531	6	528	0.0	603
MsG0580029734.01.T01	AT2G42920	56.226	530	223	4	4	531	6	528	0.0	603
MsG0580029734.01.T01	AT5G48910	38.911	514	297	5	33	530	31	543	3.24e-131	397
MsG0580029734.01.T01	AT5G66520	38.057	494	299	3	35	526	24	512	5.54e-124	377
MsG0580029734.01.T01	AT5G06540	36.346	509	311	5	25	526	13	515	3.07e-122	373
MsG0580029734.01.T01	AT5G08305	38.142	506	303	6	29	530	12	511	6.27e-120	364
MsG0580029734.01.T01	AT3G62890	39.446	469	270	6	74	532	8	472	2.25e-117	358
MsG0580029734.01.T01	AT3G62890	25.352	284	162	7	69	340	139	384	4.43e-16	81.6
MsG0580029734.01.T01	AT5G59200	35.577	520	325	4	13	532	17	526	4.61e-116	354
MsG0580029734.01.T01	AT4G18840	36.290	496	284	5	26	491	41	534	1.12e-115	353

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Find 121 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATATAGCAAATTG+TGG	0.593604	5:+101351265	None:intergenic
AAACTTGACAGAGAAAGAAC+CGG	0.477193	5:-101350102	MsG0580029734.01.T01:CDS
AAATCCAGATGCCATTATAT+GGG	0.444774	5:-101350300	MsG0580029734.01.T01:CDS
AACATGACAATCCTCTTCTA+GGG	0.561142	5:+101350615	None:intergenic
AACTGGAGTCGTTCAATAAA+TGG	0.301888	5:+101349997	None:intergenic
AACTTGACAGAGAAAGAACC+GGG	0.593681	5:-101350101	MsG0580029734.01.T01:CDS
AAGCAAAGATCCCCATATAA+TGG	0.425193	5:+101350289	None:intergenic
AAGCAATTGGGTTGAGGGTA+AGG	0.450991	5:+101351422	None:intergenic
AATCCAGATGCCATTATATG+GGG	0.626504	5:-101350299	MsG0580029734.01.T01:CDS
AATTCAATTGAACTACAACC+CGG	0.632591	5:+101350083	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAGATGCCATTATAT+GGG	-	Chr5:101351257-101351276	MsG0580029734.01.T01:CDS	30.0%
AATTCAATTGAACTACAACC+CGG	+	Chr5:101351477-101351496	None:intergenic	30.0%
AGTTGGAATTCTATGATTAG+TGG	-	Chr5:101350658-101350677	MsG0580029734.01.T01:CDS	30.0%
ATTGACATGTATTGTAAGTG+TGG	-	Chr5:101350883-101350902	MsG0580029734.01.T01:CDS	30.0%
CAAACCCAAATCTTTATTCT+TGG	-	Chr5:101350233-101350252	MsG0580029734.01.T01:CDS	30.0%
CCAATAAAACTTACAGAATC+TGG	+	Chr5:101351060-101351079	None:intergenic	30.0%
CTATAAGAACTTCAGTTAGT+TGG	-	Chr5:101350641-101350660	MsG0580029734.01.T01:CDS	30.0%
TAAATCCAGATGCCATTATA+TGG	-	Chr5:101351256-101351275	MsG0580029734.01.T01:CDS	30.0%
TATTGCCTCTTCAAATTTGT+TGG	+	Chr5:101351412-101351431	None:intergenic	30.0%
TCAATCTTGAAATGGAAAAC+TGG	+	Chr5:101351580-101351599	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	101349980	101351599	101349980	ID=MsG0580029734.01;Name=MsG0580029734.01
Chr5	mRNA	101349980	101351599	101349980	ID=MsG0580029734.01.T01;Parent=MsG0580029734.01;Name=MsG0580029734.01.T01;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|539
Chr5	exon	101349980	101351599	101349980	ID=MsG0580029734.01.T01:exon:36822;Parent=MsG0580029734.01.T01
Chr5	CDS	101349980	101351599	101349980	ID=MsG0580029734.01.T01:cds;Parent=MsG0580029734.01.T01

Gene Sequence

>MsG0580029734.01.T01

ATGTTAACTCTTTCTTGTTCTGCACTTTCTCAACCACAACCACCACCTTCCATATCCAAATTCATCTCCAACCATCCATGTCTCACCATGCTCCAAAACCACTGCACCACCATCAACCACTTCCACCAAATCTACCCTCACATCATCAAAACCGGCCTTACCCTCAACCCAATTGCTTCCACACGTGCACTCACCTTCTGTGCCTCACCATCTGGCAACATTAACTATGCCTACAAACTGTTTGTCAGAATGCCAAACCCAAATCTTTATTCTTGGAACATAATTATCAGAGCTTTTTCTAGATCCTCAACACCACAATTTGCTATATCACTTTTTGTTGATATGTTGTATTCTCAAATTCAACCTCAGTATTTGACTTACCCTTCTGTTTTCAAAGCTTATGCTCAATTGGGTCATGCCCATTATGGAGCTCAGCTTCATGGTAGGGTTGTGAAATTAGGTCTTCAAAAGGATCAATTTATTTGTAATACTATTATTTATATGTATGCTAATAGTGGATTAATGAGTGAAGCTAGAAGAGTTTTTGATGGAAAAAAATTGGAACTTTATGATCATGATGTTGTAGCTATTAATTCAATGATTATGGGTTTTGCCAAGTGTGGTGAGATTGATCAATCTAGGAAGTTGTTTGATGATATGGCTATAAGAACTTCAGTTAGTTGGAATTCTATGATTAGTGGATATGTTAGGAATGGGAAATTAATGGAGGCATTGGAACTTTTTCACAAGATGCAAGATGAAGGGGTTGAAGTAAGTGAGTTTACAATGGTGAGTTTGTTAAATGCTTGTGCTCACTTAGGAGCACTTCAACATGGGAAATGGGTTCATGATTATATAAAAAGGAATCATTTTGAGTTGAATGTTATTGTTGTTACAGCAATAATTGACATGTATTGTAAGTGTGGGTCTGTTGAAAATGCCGTTGAAGTTTTTGAGACATGCCCTAGAAGAGGATTGTCATGTTGGAACTCTATTATAATTGGGCTAGCCATGAATGGTCTTGAAAGAGAAGCTTTTGAGTTCTTCTCTAAGCTTGAATCTTCGAAATTGTTAAAGCCAGATTCTGTAAGTTTTATTGGTGTATTAACTGCTTGTAAACATTTGGGAGCAGTTGATATAGCAAGGGACTATTTTGAATTGATGATGAATAAGTATGAGATTGAACCATCAATAAAACACTATACTTGTATTGTTGATGTGCTGGGTCAAGCTGGACTCCTAGAGGAAGCAGAGGAACTCATAAAGGGCATGTCTATAAATCCAGATGCCATTATATGGGGATCTTTGCTTTCATCTTGTAGGAAGCATGGGAATGTACAGATTGCGAGACGAGCTGCGCAAAGGGTTTATGAGTTAAATCCAAGTGATGCTAGTGGTTATGTACTTATGTCTAATGTACATGCTGCGTCCAACAAATTTGAAGAGGCAATAGAGCAAAGGCTTTTAATGAAGGAAAACTTGACAGAGAAAGAACCGGGTTGTAGTTCAATTGAATTATATGGAGAGGTTCATGAGTTTCTAGCTGGGGGAAGGCTGCATCCTAAAACTCAAGAGATCTACCATTTATTGAACGACTCCAGTTTTCCATTTCAAGATTGA

Protein sequence

>MsG0580029734.01.T01

MLTLSCSALSQPQPPPSISKFISNHPCLTMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSGNINYAYKLFVRMPNPNLYSWNIIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQKDQFICNTIIYMYANSGLMSEARRVFDGKKLELYDHDVVAINSMIMGFAKCGEIDQSRKLFDDMAIRTSVSWNSMISGYVRNGKLMEALELFHKMQDEGVEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGLEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAVDIARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMSINPDAIIWGSLLSSCRKHGNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEVHEFLAGGRLHPKTQEIYHLLNDSSFPFQD*