AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014588.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014588.01.T01 MTR_3g060750 80.180 222 22 3 24 231 1 214 2.82e-119 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014588.01.T01 AT4G26555 48.113 212 80 5 30 222 7 207 1.34e-55 177
MsG0380014588.01.T01 AT4G26555 54.070 172 50 4 69 222 1 161 4.15e-52 166
MsG0380014588.01.T01 AT4G26555 38.854 157 74 4 30 167 7 160 5.32e-25 97.4

Find 57 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCCTTCTATTTCTTTA+TGG 0.076028 3:-56833443 None:intergenic
CAGCATACATCCTCAGATTT+TGG 0.203686 3:+56833538 MsG0380014588.01.T01:three_prime_UTR
AAAATCATTGTTTCCTTCTA+TGG 0.208942 3:-56833413 None:intergenic
TAATACTCCCATTCTCAATT+TGG 0.235456 3:-56831217 None:intergenic
CAGACAAACCTTATGACTTC+TGG 0.332375 3:-56831570 None:intergenic
ATGTTATTCTTCTCCTGCTT+TGG 0.339105 3:+56831521 MsG0380014588.01.T01:CDS
TTCTCATGCTCAAGAACCTT+TGG 0.349070 3:+56833253 MsG0380014588.01.T01:CDS
AGGTTGATTGTTCAGTTTAT+CGG 0.354737 3:+56831483 MsG0380014588.01.T01:CDS
GATTACTTTCTCCATTGAAT+TGG 0.366396 3:-56832477 None:intergenic
AAAATAACGTGGTGCACATT+TGG 0.367542 3:+56833572 MsG0380014588.01.T01:three_prime_UTR
AGTGCTAGACTAACCTCTTC+AGG 0.368074 3:-56832996 None:intergenic
GTGTTAGATAGAATGGAAAT+TGG 0.386944 3:+56833478 MsG0380014588.01.T01:three_prime_UTR
TCATCCAGAGGAAGTATAAC+AGG 0.388887 3:-56832499 None:intergenic
TGCTTTGGCTGCACCAATCA+TGG 0.393966 3:+56831536 MsG0380014588.01.T01:CDS
GGTTCATTCATGTCCATGAT+TGG 0.398655 3:-56831549 None:intergenic
CAGAGCTGTGTTAGATAGAA+TGG 0.412111 3:+56833471 MsG0380014588.01.T01:three_prime_UTR
TAATCCTGTTATACTTCCTC+TGG 0.433615 3:+56832495 MsG0380014588.01.T01:CDS
GTATGAAACCAAGCAACATT+AGG 0.437834 3:-56832430 None:intergenic
GCTAGTGGAGTGAGAATTCA+AGG 0.450122 3:+56831695 MsG0380014588.01.T01:CDS
TGATCTTCTAAGACCATAGA+AGG 0.453324 3:+56833400 MsG0380014588.01.T01:three_prime_UTR
ACTTCCTTCCAAATTGAGAA+TGG 0.457588 3:+56831209 MsG0380014588.01.T01:CDS
AAGGGCATTGATTCCACCTT+CGG 0.461387 3:+56832941 MsG0380014588.01.T01:CDS
GATAGAGATAATGTTCTACT+TGG 0.462812 3:+56831168 MsG0380014588.01.T01:CDS
CTTCCTTCCAAATTGAGAAT+GGG 0.464378 3:+56831210 MsG0380014588.01.T01:CDS
AAAGAAATAGAAGGGTGATC+AGG 0.466408 3:+56833447 MsG0380014588.01.T01:three_prime_UTR
ATGATTGGTGCAGCCAAAGC+AGG 0.489354 3:-56831534 None:intergenic
ACTACTGTCCTAATGTTGCT+TGG 0.490484 3:+56832422 MsG0380014588.01.T01:CDS
TGAATGAACCAGAAGTCATA+AGG 0.510966 3:+56831562 MsG0380014588.01.T01:CDS
ACTTCCTCTGGATGAGGACC+AGG 0.515288 3:+56832507 MsG0380014588.01.T01:CDS
GCAGAGACGGAAGCAGCATA+TGG 0.516780 3:-56831258 None:intergenic
TAATTAAATTCAGATTGTTG+TGG 0.522164 3:-56833311 None:intergenic
GAGAAAGAAGGCTGCGTCGA+GGG 0.529313 3:-56833235 None:intergenic
AGTACAGTAGACCAATTCAA+TGG 0.540259 3:+56832466 MsG0380014588.01.T01:CDS
CTAATTGCAGCCAAAATCTG+AGG 0.543159 3:-56833548 None:intergenic
AGACTAACCTCTTCAGGTAT+CGG 0.554174 3:-56832990 None:intergenic
GTTCTTGAGCATGAGAAAGA+AGG 0.555035 3:-56833247 None:intergenic
CTTCCGTCTCTGCTTCTCCA+AGG 0.555396 3:+56831268 MsG0380014588.01.T01:CDS
TTGACTGGCATGAGAGTTGG+TGG 0.558293 3:+56832703 MsG0380014588.01.T01:CDS
TGTTATACTTCCTCTGGATG+AGG 0.558694 3:+56832501 MsG0380014588.01.T01:CDS
ACTCCCATTCTCAATTTGGA+AGG 0.560845 3:-56831213 None:intergenic
GTGGTGCACATTTGGTATCA+TGG 0.562972 3:+56833580 MsG0380014588.01.T01:three_prime_UTR
CTTCACTTGTAGGAAAGAGA+AGG 0.564330 3:+56832922 MsG0380014588.01.T01:intron
TGGAAGGAAGTTCACAACTC+AGG 0.571522 3:-56831197 None:intergenic
GAGAAGAATAACATAATATG+TGG 0.575707 3:-56831512 None:intergenic
GAGACGGAAGCAGCATATGG+TGG 0.576235 3:-56831255 None:intergenic
TCTACATATCCTACCGAAGG+TGG 0.578764 3:-56832954 None:intergenic
TAGTCTAGCACTTGATACAA+AGG 0.593136 3:+56833007 MsG0380014588.01.T01:CDS
TTCACTTGTAGGAAAGAGAA+GGG 0.601750 3:+56832923 MsG0380014588.01.T01:intron
GCATTGATTCCACCTTCGGT+AGG 0.611946 3:+56832945 MsG0380014588.01.T01:CDS
AGGACTTTGAAGCTAGCTAG+TGG 0.614785 3:+56831680 MsG0380014588.01.T01:intron
CTTGAAGCCGATACCTGAAG+AGG 0.622095 3:+56832983 MsG0380014588.01.T01:CDS
AGTTGAACTTCAAATACCAA+AGG 0.622539 3:-56833269 None:intergenic
ATACCTTGGAGAAGCAGAGA+CGG 0.631916 3:-56831271 None:intergenic
TGAGAAAGAAGGCTGCGTCG+AGG 0.648007 3:-56833236 None:intergenic
TCGTCTACATATCCTACCGA+AGG 0.651549 3:-56832957 None:intergenic
CTAACCTGGTCCTCATCCAG+AGG 0.693869 3:-56832511 None:intergenic
TCATGAATCCAGGTGCACTG+AGG 0.729193 3:+56831401 MsG0380014588.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAATAGATAATATAAA+GGG - Chr3:56832645-56832664 None:intergenic 10.0%
!! TCATAATATGAATTAATAAT+GGG + Chr3:56832330-56832349 MsG0380014588.01.T01:intron 10.0%
!! TTCATAATATGAATTAATAA+TGG + Chr3:56832329-56832348 MsG0380014588.01.T01:intron 10.0%
!!! TTAATTTCTTTTAATCAAAA+GGG - Chr3:56832150-56832169 None:intergenic 10.0%
!! AACAAATAGATAATATAAAG+GGG - Chr3:56832644-56832663 None:intergenic 15.0%
!! CAAACAAATAGATAATATAA+AGG - Chr3:56832646-56832665 None:intergenic 15.0%
!!! AAAAACATGATATTGTTTTT+AGG - Chr3:56831345-56831364 None:intergenic 15.0%
!!! CTTAATTTCTTTTAATCAAA+AGG - Chr3:56832151-56832170 None:intergenic 15.0%
!!! TTTTTAAATCAGATGATATT+GGG + Chr3:56832667-56832686 MsG0380014588.01.T01:intron 15.0%
!!! TTTTTTAAATCAGATGATAT+TGG + Chr3:56832666-56832685 MsG0380014588.01.T01:intron 15.0%
!! ACAAATAGATAATATAAAGG+GGG - Chr3:56832643-56832662 None:intergenic 20.0%
!! ATATATATGAAAATCATGAG+AGG - Chr3:56832774-56832793 None:intergenic 20.0%
!! TAAAATGTTATGTTAGTAGT+TGG + Chr3:56833068-56833087 MsG0380014588.01.T01:intron 20.0%
!! TAATTAAATTCAGATTGTTG+TGG - Chr3:56833314-56833333 None:intergenic 20.0%
!! TGAAAAAATATTGTTCAAGA+AGG + Chr3:56831463-56831482 MsG0380014588.01.T01:CDS 20.0%
!!! TAAAATGATTCATGTCATTT+TGG + Chr3:56832807-56832826 MsG0380014588.01.T01:intron 20.0%
!!! TTTTAAATCAGATGATATTG+GGG + Chr3:56832668-56832687 MsG0380014588.01.T01:intron 20.0%
!!! TTTTATTTTCTTCTGTCAAT+TGG + Chr3:56833341-56833360 MsG0380014588.01.T01:three_prime_UTR 20.0%
!!! TTTTCCATAAAGAAATAGAA+GGG + Chr3:56833439-56833458 MsG0380014588.01.T01:three_prime_UTR 20.0%
!!! TTTTTCCATAAAGAAATAGA+AGG + Chr3:56833438-56833457 MsG0380014588.01.T01:three_prime_UTR 20.0%
! AAAATCATTGTTTCCTTCTA+TGG - Chr3:56833416-56833435 None:intergenic 25.0%
! AAATTATACATGTATGCCAA+AGG - Chr3:56832839-56832858 None:intergenic 25.0%
! ATACTGTCATACAATATGAT+CGG - Chr3:56832005-56832024 None:intergenic 25.0%
! ATTTCGACACACAAAAAAAA+AGG - Chr3:56832869-56832888 None:intergenic 25.0%
! CACAATTTAAACACACAATA+AGG - Chr3:56831871-56831890 None:intergenic 25.0%
! CTTATTGTGTGTTTAAATTG+TGG + Chr3:56831869-56831888 MsG0380014588.01.T01:intron 25.0%
! GAGAAGAATAACATAATATG+TGG - Chr3:56831515-56831534 None:intergenic 25.0%
! TAGAATGAAATGAATTAGAG+AGG - Chr3:56831306-56831325 None:intergenic 25.0%
! TCAAATTAGTTGTTACTGAA+GGG + Chr3:56832221-56832240 MsG0380014588.01.T01:intron 25.0%
! TTCAAATTAGTTGTTACTGA+AGG + Chr3:56832220-56832239 MsG0380014588.01.T01:intron 25.0%
! TTGAAAGAAATAAACTAACC+TGG - Chr3:56832528-56832547 None:intergenic 25.0%
!! AGTTTATTTCTTTCAACTTG+TGG + Chr3:56832532-56832551 MsG0380014588.01.T01:intron 25.0%
!! GTTTATTTCTTTCAACTTGT+GGG + Chr3:56832533-56832552 MsG0380014588.01.T01:intron 25.0%
!! TTTTTGTGTTTATTGCAGTT+TGG + Chr3:56833212-56833231 MsG0380014588.01.T01:intron 25.0%
!!! TATTTTTATGTGAAGCATCT+AGG + Chr3:56831660-56831679 MsG0380014588.01.T01:intron 25.0%
AAGGGTAAGTAAAATGCATA+AGG - Chr3:56832132-56832151 None:intergenic 30.0%
AATAAGAAACCTCATCAGAA+AGG - Chr3:56832590-56832609 None:intergenic 30.0%
AATTGGAAAATGTTTGAGGA+AGG + Chr3:56833495-56833514 MsG0380014588.01.T01:intron 30.0%
AGAGGAAACAATATATACCT+TGG - Chr3:56831288-56831307 None:intergenic 30.0%
AGTTGAACTTCAAATACCAA+AGG - Chr3:56833272-56833291 None:intergenic 30.0%
CAAATTAGTTGTTACTGAAG+GGG + Chr3:56832222-56832241 MsG0380014588.01.T01:intron 30.0%
CTGCAATTAGAAAAATAACG+TGG + Chr3:56833561-56833580 MsG0380014588.01.T01:three_prime_UTR 30.0%
GATAGAGATAATGTTCTACT+TGG + Chr3:56831168-56831187 MsG0380014588.01.T01:CDS 30.0%
GATTACTTTCTCCATTGAAT+TGG - Chr3:56832480-56832499 None:intergenic 30.0%
GTGTGTTTAAATTGTGGTTA+CGG + Chr3:56831875-56831894 MsG0380014588.01.T01:intron 30.0%
GTGTTAGATAGAATGGAAAT+TGG + Chr3:56833478-56833497 MsG0380014588.01.T01:three_prime_UTR 30.0%
TAATACTCCCATTCTCAATT+TGG - Chr3:56831220-56831239 None:intergenic 30.0%
TGGAAATTGGAAAATGTTTG+AGG + Chr3:56833491-56833510 MsG0380014588.01.T01:intron 30.0%
TTGAATTCAATTGTGTATGC+AGG + Chr3:56832275-56832294 MsG0380014588.01.T01:intron 30.0%
TTGACTTAAGCACAATACAA+GGG - Chr3:56832400-56832419 None:intergenic 30.0%
TTTACTATTCCTTTCTGATG+AGG + Chr3:56832578-56832597 MsG0380014588.01.T01:intron 30.0%
TTTGCACTTCTATTTGAAAG+AGG - Chr3:56832072-56832091 None:intergenic 30.0%
! AGGTTGATTGTTCAGTTTAT+CGG + Chr3:56831483-56831502 MsG0380014588.01.T01:CDS 30.0%
! ATCACCCTTCTATTTCTTTA+TGG - Chr3:56833446-56833465 None:intergenic 30.0%
! ATTGACTTAAGCACAATACA+AGG - Chr3:56832401-56832420 None:intergenic 30.0%
! CAAATAGAAGTGCAAATTCT+TGG + Chr3:56832076-56832095 MsG0380014588.01.T01:intron 30.0%
! TGTATCTTTTGATGTCATTG+TGG + Chr3:56832889-56832908 MsG0380014588.01.T01:intron 30.0%
!!! CAAATGGATACTTTGTTTTC+AGG + Chr3:56832302-56832321 MsG0380014588.01.T01:intron 30.0%
AAAATAACGTGGTGCACATT+TGG + Chr3:56833572-56833591 MsG0380014588.01.T01:three_prime_UTR 35.0%
AAAATCATGAGAGGAAAGAC+TGG - Chr3:56832765-56832784 None:intergenic 35.0%
AAACACATTTCAGAGTTCTC+TGG - Chr3:56832561-56832580 None:intergenic 35.0%
AAAGAAATAGAAGGGTGATC+AGG + Chr3:56833447-56833466 MsG0380014588.01.T01:three_prime_UTR 35.0%
AACCTTGAGATCGGATTTAT+TGG + Chr3:56831800-56831819 MsG0380014588.01.T01:intron 35.0%
ACTTCCTTCCAAATTGAGAA+TGG + Chr3:56831209-56831228 MsG0380014588.01.T01:CDS 35.0%
AGTACAGTAGACCAATTCAA+TGG + Chr3:56832466-56832485 MsG0380014588.01.T01:CDS 35.0%
ATACATGTATGCCAAAGGTT+TGG - Chr3:56832834-56832853 None:intergenic 35.0%
ATCCAATAAATCCGATCTCA+AGG - Chr3:56831805-56831824 None:intergenic 35.0%
ATGTTATTCTTCTCCTGCTT+TGG + Chr3:56831521-56831540 MsG0380014588.01.T01:CDS 35.0%
CTAGCAAAATGCAGTATATG+CGG + Chr3:56831927-56831946 MsG0380014588.01.T01:intron 35.0%
CTTAAAACTCTCATGAATCC+AGG + Chr3:56831391-56831410 MsG0380014588.01.T01:intron 35.0%
CTTCCTTCCAAATTGAGAAT+GGG + Chr3:56831210-56831229 MsG0380014588.01.T01:CDS 35.0%
GTATGAAACCAAGCAACATT+AGG - Chr3:56832433-56832452 None:intergenic 35.0%
TAATCCTGTTATACTTCCTC+TGG + Chr3:56832495-56832514 MsG0380014588.01.T01:CDS 35.0%
TAGTCTAGCACTTGATACAA+AGG + Chr3:56833007-56833026 MsG0380014588.01.T01:CDS 35.0%
TATTAGCATGCCGTAATCTT+CGG + Chr3:56832616-56832635 MsG0380014588.01.T01:intron 35.0%
TGAATGAACCAGAAGTCATA+AGG + Chr3:56831562-56831581 MsG0380014588.01.T01:CDS 35.0%
TTCACTTGTAGGAAAGAGAA+GGG + Chr3:56832923-56832942 MsG0380014588.01.T01:intron 35.0%
! GCATATACTGCATTTTGCTA+GGG - Chr3:56831928-56831947 None:intergenic 35.0%
!! TGATCTTCTAAGACCATAGA+AGG + Chr3:56833400-56833419 MsG0380014588.01.T01:three_prime_UTR 35.0%
!!! GTCAGTCATTTTTGATGCAA+AGG + Chr3:56831829-56831848 MsG0380014588.01.T01:intron 35.0%
ACCACTTCAGCTATGTAACA+AGG + Chr3:56833140-56833159 MsG0380014588.01.T01:intron 40.0%
ACTACTGTCCTAATGTTGCT+TGG + Chr3:56832422-56832441 MsG0380014588.01.T01:CDS 40.0%
ACTCCCATTCTCAATTTGGA+AGG - Chr3:56831216-56831235 None:intergenic 40.0%
AGACTAACCTCTTCAGGTAT+CGG - Chr3:56832993-56833012 None:intergenic 40.0%
CAGACAAACCTTATGACTTC+TGG - Chr3:56831573-56831592 None:intergenic 40.0%
CAGAGCTGTGTTAGATAGAA+TGG + Chr3:56833471-56833490 MsG0380014588.01.T01:three_prime_UTR 40.0%
CTAATTGCAGCCAAAATCTG+AGG - Chr3:56833551-56833570 None:intergenic 40.0%
CTTCACTTGTAGGAAAGAGA+AGG + Chr3:56832922-56832941 MsG0380014588.01.T01:intron 40.0%
GGTCAATTTGGTTGCAATTG+TGG + Chr3:56831948-56831967 MsG0380014588.01.T01:intron 40.0%
GGTTCATTCATGTCCATGAT+TGG - Chr3:56831552-56831571 None:intergenic 40.0%
GTTCTTGAGCATGAGAAAGA+AGG - Chr3:56833250-56833269 None:intergenic 40.0%
TCCTTGTTACATAGCTGAAG+TGG - Chr3:56833144-56833163 None:intergenic 40.0%
TGATGCAAGAACCTTGAGAT+CGG + Chr3:56831791-56831810 MsG0380014588.01.T01:intron 40.0%
TGCAGTATATGCGGTCAATT+TGG + Chr3:56831936-56831955 MsG0380014588.01.T01:intron 40.0%
TGGAAAATGTTTGAGGAAGG+TGG + Chr3:56833498-56833517 MsG0380014588.01.T01:intron 40.0%
TGTTATACTTCCTCTGGATG+AGG + Chr3:56832501-56832520 MsG0380014588.01.T01:CDS 40.0%
TTAGTTGTTACTGAAGGGGA+AGG + Chr3:56832226-56832245 MsG0380014588.01.T01:intron 40.0%
TTCTCATGCTCAAGAACCTT+TGG + Chr3:56833253-56833272 MsG0380014588.01.T01:CDS 40.0%
! CAGCATACATCCTCAGATTT+TGG + Chr3:56833538-56833557 MsG0380014588.01.T01:three_prime_UTR 40.0%
! CGCATATACTGCATTTTGCT+AGG - Chr3:56831929-56831948 None:intergenic 40.0%
! TCATCCAGAGGAAGTATAAC+AGG - Chr3:56832502-56832521 None:intergenic 40.0%
! TGCTAGGGTATCACATATCA+AGG - Chr3:56831913-56831932 None:intergenic 40.0%
!! GGGTTAAAGCAAGTTTTGAC+TGG + Chr3:56832688-56832707 MsG0380014588.01.T01:CDS 40.0%
!! GTCATTTTGGTCCAAACCTT+TGG + Chr3:56832820-56832839 MsG0380014588.01.T01:intron 40.0%
AGAGGAAAGACTGGTATGTG+AGG - Chr3:56832756-56832775 None:intergenic 45.0%
AGTGCTAGACTAACCTCTTC+AGG - Chr3:56832999-56833018 None:intergenic 45.0%
ATACCTTGGAGAAGCAGAGA+CGG - Chr3:56831274-56831293 None:intergenic 45.0%
GATGTCATTGTGGTCACTCT+TGG + Chr3:56832899-56832918 MsG0380014588.01.T01:intron 45.0%
GCTAGTGGAGTGAGAATTCA+AGG + Chr3:56831695-56831714 MsG0380014588.01.T01:CDS 45.0%
GTGGTGCACATTTGGTATCA+TGG + Chr3:56833580-56833599 MsG0380014588.01.T01:three_prime_UTR 45.0%
TAAAGGGGGACCGAAGATTA+CGG - Chr3:56832629-56832648 None:intergenic 45.0%
TCACTCTTGGCTTCACTTGT+AGG + Chr3:56832912-56832931 MsG0380014588.01.T01:intron 45.0%
TCGTCTACATATCCTACCGA+AGG - Chr3:56832960-56832979 None:intergenic 45.0%
TCTACATATCCTACCGAAGG+TGG - Chr3:56832957-56832976 None:intergenic 45.0%
TGGAAGGAAGTTCACAACTC+AGG - Chr3:56831200-56831219 None:intergenic 45.0%
!! AAGGGCATTGATTCCACCTT+CGG + Chr3:56832941-56832960 MsG0380014588.01.T01:CDS 45.0%
!! AGGACTTTGAAGCTAGCTAG+TGG + Chr3:56831680-56831699 MsG0380014588.01.T01:intron 45.0%
!!! GTTTTGACTGGCATGAGAGT+TGG + Chr3:56832700-56832719 MsG0380014588.01.T01:CDS 45.0%
AAATCTCCACCGTGTGCTTC+TGG - Chr3:56832253-56832272 None:intergenic 50.0%
ATGATTGGTGCAGCCAAAGC+AGG - Chr3:56831537-56831556 None:intergenic 50.0%
CTTGAAGCCGATACCTGAAG+AGG + Chr3:56832983-56833002 MsG0380014588.01.T01:CDS 50.0%
TCATGAATCCAGGTGCACTG+AGG + Chr3:56831401-56831420 MsG0380014588.01.T01:intron 50.0%
TGCTTTGGCTGCACCAATCA+TGG + Chr3:56831536-56831555 MsG0380014588.01.T01:CDS 50.0%
TGTGTATGCAGGCGTGCAAA+TGG + Chr3:56832286-56832305 MsG0380014588.01.T01:intron 50.0%
TTGACTGGCATGAGAGTTGG+TGG + Chr3:56832703-56832722 MsG0380014588.01.T01:CDS 50.0%
! AGAAGCACACGGTGGAGATT+TGG + Chr3:56832252-56832271 MsG0380014588.01.T01:intron 50.0%
!! GCATTGATTCCACCTTCGGT+AGG + Chr3:56832945-56832964 MsG0380014588.01.T01:CDS 50.0%
ACTTCCTCTGGATGAGGACC+AGG + Chr3:56832507-56832526 MsG0380014588.01.T01:CDS 55.0%
CTAACCTGGTCCTCATCCAG+AGG - Chr3:56832514-56832533 None:intergenic 55.0%
CTTCCGTCTCTGCTTCTCCA+AGG + Chr3:56831268-56831287 MsG0380014588.01.T01:CDS 55.0%
CTTTGCATCCTCAGTGCACC+TGG - Chr3:56831412-56831431 None:intergenic 55.0%
GAGAAAGAAGGCTGCGTCGA+GGG - Chr3:56833238-56833257 None:intergenic 55.0%
GAGACGGAAGCAGCATATGG+TGG - Chr3:56831258-56831277 None:intergenic 55.0%
GCAGAGACGGAAGCAGCATA+TGG - Chr3:56831261-56831280 None:intergenic 55.0%
TGAGAAAGAAGGCTGCGTCG+AGG - Chr3:56833239-56833258 None:intergenic 55.0%
! GAAGGACCAGAAGCACACGG+TGG + Chr3:56832244-56832263 MsG0380014588.01.T01:intron 60.0%
! GGGGAAGGACCAGAAGCACA+CGG + Chr3:56832241-56832260 MsG0380014588.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 56831159 56833617 56831159 ID=MsG0380014588.01;Name=MsG0380014588.01
Chr3 mRNA 56831159 56833617 56831159 ID=MsG0380014588.01.T01;Parent=MsG0380014588.01;Name=MsG0380014588.01.T01;_AED=0.35;_eAED=0.40;_QI=0|0.75|0.66|1|0.75|0.66|9|229|231
Chr3 exon 56831159 56831289 56831159 ID=MsG0380014588.01.T01:exon:23727;Parent=MsG0380014588.01.T01
Chr3 exon 56831413 56831583 56831413 ID=MsG0380014588.01.T01:exon:23728;Parent=MsG0380014588.01.T01
Chr3 exon 56831682 56831716 56831682 ID=MsG0380014588.01.T01:exon:23729;Parent=MsG0380014588.01.T01
Chr3 exon 56832416 56832528 56832416 ID=MsG0380014588.01.T01:exon:23730;Parent=MsG0380014588.01.T01
Chr3 exon 56832679 56832724 56832679 ID=MsG0380014588.01.T01:exon:23731;Parent=MsG0380014588.01.T01
Chr3 exon 56832934 56833028 56832934 ID=MsG0380014588.01.T01:exon:23732;Parent=MsG0380014588.01.T01
Chr3 exon 56833230 56833361 56833230 ID=MsG0380014588.01.T01:exon:23733;Parent=MsG0380014588.01.T01
Chr3 exon 56833384 56833498 56833384 ID=MsG0380014588.01.T01:exon:23734;Parent=MsG0380014588.01.T01
Chr3 exon 56833531 56833617 56833531 ID=MsG0380014588.01.T01:exon:23735;Parent=MsG0380014588.01.T01
Chr3 CDS 56831159 56831289 56831159 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 CDS 56831413 56831583 56831413 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 CDS 56831682 56831716 56831682 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 CDS 56832416 56832528 56832416 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 CDS 56832679 56832724 56832679 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 CDS 56832934 56833028 56832934 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 CDS 56833230 56833334 56833230 ID=MsG0380014588.01.T01:cds;Parent=MsG0380014588.01.T01
Chr3 three_prime_UTR 56833335 56833361 56833335 ID=MsG0380014588.01.T01:three_prime_utr;Parent=MsG0380014588.01.T01
Chr3 three_prime_UTR 56833384 56833498 56833384 ID=MsG0380014588.01.T01:three_prime_utr;Parent=MsG0380014588.01.T01
Chr3 three_prime_UTR 56833531 56833617 56833531 ID=MsG0380014588.01.T01:three_prime_utr;Parent=MsG0380014588.01.T01
Gene Sequence

>MsG0380014588.01.T01

ATGAATATAGATAGAGATAATGTTCTACTTGGTTTGAGCCTGAGTTGTGAACTTCCTTCCAAATTGAGAATGGGAGTATTATCATTTCTCTCACTTCCACCATATGCTGCTTCCGTCTCTGCTTCTCCAAGGTGCACTGAGGATGCAAAGAGCTCGAACAACAAAATTTCTACATTAACAGTGAAAAAATATTGTTCAAGAAGGTTGATTGTTCAGTTTATCGGTATTAACCACATATTATGTTATTCTTCTCCTGCTTTGGCTGCACCAATCATGGACATGAATGAACCAGAAGTCATAAGGACTTTGAAGCTAGCTAGTGGAGTGAGAATTCAAGTCAATAACTACTGTCCTAATGTTGCTTGGTTTCATACTCTAATTCATCACAGTACAGTAGACCAATTCAATGGAGAAAGTAATCCTGTTATACTTCCTCTGGATGAGGACCAGATGATATTGGGGTTAAAGCAAGTTTTGACTGGCATGAGAGTTGGTGGAAAGAGAAGGGCATTGATTCCACCTTCGGTAGGATATGTAGACGAGAACTTGAAGCCGATACCTGAAGAGGTTAGTCTAGCACTTGATACAAAGTTTGGCCCTCGACGCAGCCTTCTTTCTCATGCTCAAGAACCTTTGGTATTTGAAGTTCAACTCTTGAAAATTCTGAGTGTTCCACAACAATCTGAATTTAATTAA

Protein sequence

>MsG0380014588.01.T01

MNIDRDNVLLGLSLSCELPSKLRMGVLSFLSLPPYAASVSASPRCTEDAKSSNNKISTLTVKKYCSRRLIVQFIGINHILCYSSPALAAPIMDMNEPEVIRTLKLASGVRIQVNNYCPNVAWFHTLIHHSTVDQFNGESNPVILPLDEDQMILGLKQVLTGMRVGGKRRALIPPSVGYVDENLKPIPEEVSLALDTKFGPRRSLLSHAQEPLVFEVQLLKILSVPQQSEFN*