Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044957.01.T01 | XP_003628559.1 | 56.584 | 486 | 69 | 7 | 7 | 350 | 116 | 601 | 3.34E-150 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044957.01.T01 | G7LDS7 | 56.584 | 486 | 69 | 7 | 7 | 350 | 116 | 601 | 1.60e-150 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000835.01 | MsG0880044957.01 | 0.803827 | 2.894784e-49 | 1.469341e-46 |
| MsG0880044902.01 | MsG0880044957.01 | 0.805489 | 1.302502e-49 | 6.899955e-47 |
| MsG0880044957.01 | MsG0880045294.01 | 0.805830 | 1.104714e-49 | 5.903730e-47 |
| MsG0880044957.01 | MsG0880047696.01 | 0.800820 | 1.204739e-48 | 5.664085e-46 |
| MsG0180003885.01 | MsG0880044957.01 | 0.823278 | 1.509467e-53 | 1.293837e-50 |
| MsG0180004493.01 | MsG0880044957.01 | 0.812507 | 4.094340e-51 | 2.608107e-48 |
| MsG0180004500.01 | MsG0880044957.01 | 0.820121 | 8.107788e-53 | 6.360003e-50 |
| MsG0180005205.01 | MsG0880044957.01 | 0.824065 | 9.874725e-54 | 8.654238e-51 |
| MsG0780041016.01 | MsG0880044957.01 | 0.810976 | 8.815632e-51 | 5.391489e-48 |
| MsG0780041440.01 | MsG0880044957.01 | 0.819323 | 1.233463e-52 | 9.460798e-50 |
| MsG0780041634.01 | MsG0880044957.01 | 0.829802 | 4.197715e-55 | 4.342898e-52 |
| MsG0880042520.01 | MsG0880044957.01 | 0.817716 | 2.853940e-52 | 2.094311e-49 |
| MsG0880043521.01 | MsG0880044957.01 | 0.808932 | 2.429282e-50 | 1.407060e-47 |
| MsG0280010916.01 | MsG0880044957.01 | 0.805285 | 1.436832e-49 | 7.571771e-47 |
| MsG0380012067.01 | MsG0880044957.01 | 0.803841 | 2.875176e-49 | 1.459950e-46 |
| MsG0680032771.01 | MsG0880044957.01 | 0.805918 | 1.058638e-49 | 5.670240e-47 |
| MsG0680034985.01 | MsG0880044957.01 | 0.813211 | 2.871107e-51 | 1.863293e-48 |
| MsG0480018584.01 | MsG0880044957.01 | 0.804773 | 1.839158e-49 | 9.565337e-47 |
| MsG0480018653.01 | MsG0880044957.01 | 0.809268 | 2.057534e-50 | 1.202602e-47 |
| MsG0480019206.01 | MsG0880044957.01 | 0.805811 | 1.114968e-49 | 5.955622e-47 |
| MsG0480020024.01 | MsG0880044957.01 | 0.813966 | 1.958710e-51 | 1.297565e-48 |
| MsG0480021037.01 | MsG0880044957.01 | 0.804036 | 2.619177e-49 | 1.336622e-46 |
| MsG0480021056.01 | MsG0880044957.01 | 0.802908 | 4.487091e-49 | 2.224516e-46 |
| MsG0480021195.01 | MsG0880044957.01 | 0.807090 | 5.990196e-50 | 3.306289e-47 |
| MsG0480021796.01 | MsG0880044957.01 | 0.814783 | 1.292086e-51 | 8.750731e-49 |
| MsG0480021918.01 | MsG0880044957.01 | 0.812923 | 3.320647e-51 | 2.138381e-48 |
| MsG0480022068.01 | MsG0880044957.01 | 0.801225 | 9.956472e-49 | 4.729358e-46 |
| MsG0480023172.01 | MsG0880044957.01 | 0.835833 | 1.333312e-56 | 1.649813e-53 |
| MsG0480023488.01 | MsG0880044957.01 | 0.839506 | 1.521021e-57 | 2.104904e-54 |
| MsG0480023489.01 | MsG0880044957.01 | 0.816497 | 5.364729e-52 | 3.807269e-49 |
| MsG0480023601.01 | MsG0880044957.01 | 0.803259 | 3.796798e-49 | 1.899197e-46 |
| MsG0580024790.01 | MsG0880044957.01 | -0.815197 | 1.045594e-51 | 7.161089e-49 |
| MsG0580025332.01 | MsG0880044957.01 | 0.854397 | 1.265169e-61 | 2.821556e-58 |
| MsG0580025661.01 | MsG0880044957.01 | 0.805351 | 1.392147e-49 | 7.348668e-47 |
| MsG0580025816.01 | MsG0880044957.01 | 0.831440 | 1.667288e-55 | 1.809394e-52 |
| MsG0380014948.01 | MsG0880044957.01 | 0.801911 | 7.199805e-49 | 3.479878e-46 |
| MsG0380015332.01 | MsG0880044957.01 | 0.829754 | 4.311875e-55 | 4.454579e-52 |
| MsG0380016126.01 | MsG0880044957.01 | 0.814049 | 1.877577e-51 | 1.246601e-48 |
| MsG0380016247.01 | MsG0880044957.01 | 0.810228 | 1.279655e-50 | 7.670699e-48 |
| MsG0380016387.01 | MsG0880044957.01 | 0.824883 | 6.338868e-54 | 5.687752e-51 |
| MsG0380016505.01 | MsG0880044957.01 | 0.856356 | 3.401574e-62 | 8.097064e-59 |
| MsG0380017244.01 | MsG0880044957.01 | 0.854076 | 1.566001e-61 | 3.456662e-58 |
| MsG0380017258.01 | MsG0880044957.01 | 0.803417 | 3.520908e-49 | 1.768399e-46 |
| MsG0380017461.01 | MsG0880044957.01 | 0.810702 | 1.010857e-50 | 6.136499e-48 |
| MsG0380017498.01 | MsG0880044957.01 | 0.854379 | 1.279988e-61 | 2.852907e-58 |
| MsG0380017589.01 | MsG0880044957.01 | 0.801433 | 9.026165e-49 | 4.310013e-46 |
| MsG0380018075.01 | MsG0880044957.01 | 0.833984 | 3.896104e-56 | 4.561348e-53 |
| MsG0480018183.01 | MsG0880044957.01 | 0.811750 | 5.989239e-51 | 3.738010e-48 |
| MsG0480018278.01 | MsG0880044957.01 | 0.804665 | 1.936683e-49 | 1.004430e-46 |
| MsG0580029919.01 | MsG0880044957.01 | 0.818575 | 1.824528e-52 | 1.370897e-49 |
| MsG0580029925.01 | MsG0880044957.01 | 0.802445 | 5.592798e-49 | 2.740116e-46 |
| MsG0580030142.01 | MsG0880044957.01 | 0.806507 | 7.954164e-50 | 4.324957e-47 |
| MsG0680030616.01 | MsG0880044957.01 | 0.818494 | 1.903639e-52 | 1.427171e-49 |
| MsG0280006601.01 | MsG0880044957.01 | 0.825639 | 4.201398e-54 | 3.851458e-51 |
| MsG0280007307.01 | MsG0880044957.01 | 0.806255 | 8.988660e-50 | 4.856267e-47 |
| MsG0280007501.01 | MsG0880044957.01 | 0.819170 | 1.336724e-52 | 1.020999e-49 |
| MsG0280007903.01 | MsG0880044957.01 | 0.830103 | 3.545172e-55 | 3.699045e-52 |
| MsG0280008257.01 | MsG0880044957.01 | 0.800015 | 1.757406e-48 | 8.095310e-46 |
| MsG0280010082.01 | MsG0880044957.01 | 0.820088 | 8.250579e-53 | 6.465977e-50 |
| MsG0280010148.01 | MsG0880044957.01 | 0.815187 | 1.050997e-51 | 7.196077e-49 |
| MsG0280010350.01 | MsG0880044957.01 | 0.816644 | 4.972584e-52 | 3.543344e-49 |
| MsG0280010366.01 | MsG0880044957.01 | 0.814241 | 1.703064e-51 | 1.136668e-48 |
| MsG0280010517.01 | MsG0880044957.01 | 0.804519 | 2.077297e-49 | 1.073261e-46 |
| MsG0780036659.01 | MsG0880044957.01 | 0.820979 | 5.150948e-53 | 4.137876e-50 |
| MsG0780038603.01 | MsG0880044957.01 | 0.815617 | 8.434718e-52 | 5.844533e-49 |
| MsG0780039155.01 | MsG0880044957.01 | 0.820990 | 5.122244e-53 | 4.116063e-50 |
| MsG0780039369.01 | MsG0880044957.01 | 0.823727 | 1.185628e-53 | 1.029394e-50 |
| MsG0780039443.01 | MsG0880044957.01 | 0.800213 | 1.601223e-48 | 7.413340e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044957.01.T01 | MTR_8g061890 | 56.584 | 486 | 69 | 7 | 7 | 350 | 116 | 601 | 4.05e-154 | 452 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTCCTTTACTAGAAATT+TGG | 0.186280 | 8:+52005239 | MsG0880044957.01.T01:intron |
| TTTATATGAACTACTGGATT+TGG | 0.236639 | 8:+52004655 | MsG0880044957.01.T01:CDS |
| TTGGATACGGTATCTGGATA+TGG | 0.270412 | 8:+52005045 | MsG0880044957.01.T01:CDS |
| ATTAGCACCCTCTGCTGTTT+TGG | 0.271434 | 8:-52005904 | None:intergenic |
| TTTCTAACAGGGACTTTAAC+TGG | 0.305511 | 8:+52005483 | MsG0880044957.01.T01:intron |
| GTTCTTATTCATTTGATTCA+TGG | 0.313951 | 8:+52005553 | MsG0880044957.01.T01:CDS |
| CAGTCATTCTAAAGTTGAAT+TGG | 0.323618 | 8:+52005026 | MsG0880044957.01.T01:CDS |
| CTAGAAATTTGGACTGGATA+AGG | 0.331691 | 8:+52005250 | MsG0880044957.01.T01:intron |
| TTCTGCAATCTTTGTATCGT+TGG | 0.338067 | 8:-52005652 | None:intergenic |
| AGTACCAACATTATTTATCT+TGG | 0.343195 | 8:-52005523 | None:intergenic |
| CAGTGTGTCTGAGCAGAATT+CGG | 0.361532 | 8:+52004808 | MsG0880044957.01.T01:intron |
| GTTGAATTGGATACGGTATC+TGG | 0.364677 | 8:+52005039 | MsG0880044957.01.T01:CDS |
| TCATCAGTAGCCTCAATATC+AGG | 0.379414 | 8:-52005305 | None:intergenic |
| AACTAAGATTCTCATTTGCT+TGG | 0.379629 | 8:-52004871 | None:intergenic |
| CACTTGATGCTTCTGAAGCT+TGG | 0.380655 | 8:-52004907 | None:intergenic |
| AGCCTCAATATCAGGTATCT+TGG | 0.385141 | 8:-52005297 | None:intergenic |
| TCACATCCGGTGAAGATGAT+TGG | 0.385305 | 8:+52005111 | MsG0880044957.01.T01:CDS |
| GTCATTTCAAATTTCCAGTC+TGG | 0.397226 | 8:-52005621 | None:intergenic |
| TCTGCAATCTTTGTATCGTT+GGG | 0.399287 | 8:-52005651 | None:intergenic |
| AAGCCACTCCATACATCAAA+TGG | 0.400489 | 8:-52006025 | None:intergenic |
| AAATCCAGTAGTTCATATAA+AGG | 0.403369 | 8:-52004653 | None:intergenic |
| GCCGGCACACAAAACCCTTC+TGG | 0.405945 | 8:+52005371 | MsG0880044957.01.T01:CDS |
| GATTCCTTTATATGAACTAC+TGG | 0.421016 | 8:+52004649 | MsG0880044957.01.T01:CDS |
| TAACAAGGAAACTGATATTA+CGG | 0.422579 | 8:+52005736 | MsG0880044957.01.T01:CDS |
| CTACACAATTCAGAGATAAC+TGG | 0.436502 | 8:+52005598 | MsG0880044957.01.T01:CDS |
| TGGTTTCACTCTCTTGCCAT+TGG | 0.445742 | 8:-52005277 | None:intergenic |
| TCAGAGATAACTGGCCAGAC+TGG | 0.445946 | 8:+52005607 | MsG0880044957.01.T01:CDS |
| CACAGAGTGTGAAACACTAC+TGG | 0.464925 | 8:-52005832 | None:intergenic |
| GATTCATGGAATGATTTCAC+TGG | 0.466290 | 8:+52005567 | MsG0880044957.01.T01:CDS |
| GTTCGCCTCCCAACCGGAAA+AGG | 0.467790 | 8:-52004957 | None:intergenic |
| TGTTATTGCTAACTTGCCAT+TGG | 0.467956 | 8:-52005965 | None:intergenic |
| AATAACAAAACAACCGATAG+TGG | 0.471418 | 8:+52005981 | MsG0880044957.01.T01:CDS |
| ATGCCGACCCATTTGATGTA+TGG | 0.474672 | 8:+52006017 | MsG0880044957.01.T01:CDS |
| AATAATGTTGGTACTGATGA+AGG | 0.476591 | 8:+52005531 | MsG0880044957.01.T01:CDS |
| GGATGCAAAATGATCATGGC+AGG | 0.498004 | 8:+52005706 | MsG0880044957.01.T01:CDS |
| GTTCATATAGTAACTTTGAC+TGG | 0.500150 | 8:+52005685 | MsG0880044957.01.T01:CDS |
| TTCTAAAGTTGAATTGGATA+CGG | 0.500970 | 8:+52005032 | MsG0880044957.01.T01:CDS |
| TGGATACGGTATCTGGATAT+GGG | 0.503330 | 8:+52005046 | MsG0880044957.01.T01:CDS |
| AGTGCTCTCTCCGCCTCAGA+AGG | 0.506630 | 8:-52004689 | None:intergenic |
| GAAAGTTTCTGTCGCTGTAA+AGG | 0.508372 | 8:+52005068 | MsG0880044957.01.T01:CDS |
| TGATTTCAATCCTTCACATC+CGG | 0.510109 | 8:+52005098 | MsG0880044957.01.T01:CDS |
| TAACAGGGACTTTAACTGGA+TGG | 0.514750 | 8:+52005487 | MsG0880044957.01.T01:intron |
| TAATTTCAGATATGCCAGTC+TGG | 0.516074 | 8:-52005863 | None:intergenic |
| CCTTTACTAGAAATTTGGAC+TGG | 0.521706 | 8:+52005244 | MsG0880044957.01.T01:intron |
| AGCATCAAGTGGGTCTATAG+AGG | 0.525641 | 8:+52004919 | MsG0880044957.01.T01:CDS |
| CTGAAACCAATCATCTTCAC+CGG | 0.533611 | 8:-52005117 | None:intergenic |
| AAGATGATTCATATGATGCA+TGG | 0.555727 | 8:+52005330 | MsG0880044957.01.T01:CDS |
| TATCATTAGTAGTCCACTAT+CGG | 0.556477 | 8:-52005994 | None:intergenic |
| TACTGGATTTGGAAATTCGA+TGG | 0.557879 | 8:+52004666 | MsG0880044957.01.T01:CDS |
| AACCAAGATACCTGATATTG+AGG | 0.558764 | 8:+52005295 | MsG0880044957.01.T01:CDS |
| AGCCACTCCATACATCAAAT+GGG | 0.560158 | 8:-52006024 | None:intergenic |
| ATCATCTTCACCGGATGTGA+AGG | 0.564246 | 8:-52005108 | None:intergenic |
| GTTATCTCTGAATTGTGTAG+TGG | 0.576231 | 8:-52005595 | None:intergenic |
| GACTGGATGCAAAATGATCA+TGG | 0.582263 | 8:+52005702 | MsG0880044957.01.T01:CDS |
| AACGCCAAGATAAATAATGT+TGG | 0.583393 | 8:+52005519 | MsG0880044957.01.T01:CDS |
| GGAAATTCGATGGCCTTCTG+AGG | 0.584338 | 8:+52004676 | MsG0880044957.01.T01:CDS |
| ATGGTGGCACCGACGTTGTG+TGG | 0.586100 | 8:+52004583 | MsG0880044957.01.T01:CDS |
| GGCTGGAAATAATACCAGAA+GGG | 0.586509 | 8:-52005385 | None:intergenic |
| AAGATTGCAGAAAGTGCTGA+TGG | 0.588969 | 8:+52005663 | MsG0880044957.01.T01:CDS |
| CACTGATTATCATTGATGCA+TGG | 0.605765 | 8:+52005772 | MsG0880044957.01.T01:CDS |
| ATGCAAAATGATCATGGCAG+GGG | 0.608924 | 8:+52005708 | MsG0880044957.01.T01:CDS |
| CAAGCTTCAGAAGCATCAAG+TGG | 0.610106 | 8:+52004908 | MsG0880044957.01.T01:CDS |
| AACATGCATCAAGCAGAACA+AGG | 0.615366 | 8:+52004609 | MsG0880044957.01.T01:CDS |
| AATTCGATGGCCTTCTGAGG+CGG | 0.617548 | 8:+52004679 | MsG0880044957.01.T01:CDS |
| CATGATACCAAAACAGCAGA+GGG | 0.621958 | 8:+52005897 | MsG0880044957.01.T01:CDS |
| AATTGCTTTGCAGGAGATGG+TGG | 0.622208 | 8:+52004567 | None:intergenic |
| GATGCAAAATGATCATGGCA+GGG | 0.622365 | 8:+52005707 | MsG0880044957.01.T01:CDS |
| ATGGCAGGGGAGCAATAACA+AGG | 0.628682 | 8:+52005721 | MsG0880044957.01.T01:CDS |
| ACTCCATACATCAAATGGGT+CGG | 0.643017 | 8:-52006020 | None:intergenic |
| GACTGGATAAGGATGACCAA+TGG | 0.649980 | 8:+52005261 | MsG0880044957.01.T01:CDS |
| ACTGGATGCAAGGTGACCAA+TGG | 0.651198 | 8:+52005949 | MsG0880044957.01.T01:CDS |
| GAGTGTGAAACACTACTGGA+AGG | 0.651264 | 8:-52005828 | None:intergenic |
| GACCCATTTGATGTATGGAG+TGG | 0.661432 | 8:+52006022 | MsG0880044957.01.T01:CDS |
| TCATGATACCAAAACAGCAG+AGG | 0.665643 | 8:+52005896 | MsG0880044957.01.T01:CDS |
| AAGCTTCAGAAGCATCAAGT+GGG | 0.679756 | 8:+52004909 | MsG0880044957.01.T01:CDS |
| TCTGTGATAGAAGACCAGAC+TGG | 0.703497 | 8:+52005849 | MsG0880044957.01.T01:CDS |
| CATGTTCTTCCACACAACGT+CGG | 0.729645 | 8:-52004592 | None:intergenic |
| GGGTCTATAGAGGATCAGAG+TGG | 0.780702 | 8:+52004929 | MsG0880044957.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATCCAGTAGTTCATATAA+AGG | - | Chr8:52004656-52004675 | None:intergenic | 25.0% |
| ! | AGTACCAACATTATTTATCT+TGG | - | Chr8:52005526-52005545 | None:intergenic | 25.0% |
| ! | GTTCTTATTCATTTGATTCA+TGG | + | Chr8:52005553-52005572 | MsG0880044957.01.T01:CDS | 25.0% |
| ! | TAACAAGGAAACTGATATTA+CGG | + | Chr8:52005736-52005755 | MsG0880044957.01.T01:CDS | 25.0% |
| ! | TGCAGAAAATTCAAAATTTC+CGG | - | Chr8:52005423-52005442 | None:intergenic | 25.0% |
| ! | TTTATATGAACTACTGGATT+TGG | + | Chr8:52004655-52004674 | MsG0880044957.01.T01:CDS | 25.0% |
| !! | ATGCTAATAGTTTTTCTAAC+AGG | + | Chr8:52005471-52005490 | MsG0880044957.01.T01:intron | 25.0% |
| !! | TGCTAATAGTTTTTCTAACA+GGG | + | Chr8:52005472-52005491 | MsG0880044957.01.T01:intron | 25.0% |
| !!! | TTCTAAAGTTGAATTGGATA+CGG | + | Chr8:52005032-52005051 | MsG0880044957.01.T01:CDS | 25.0% |
| AACGCCAAGATAAATAATGT+TGG | + | Chr8:52005519-52005538 | MsG0880044957.01.T01:CDS | 30.0% | |
| AACTAAGATTCTCATTTGCT+TGG | - | Chr8:52004874-52004893 | None:intergenic | 30.0% | |
| AAGATGATTCATATGATGCA+TGG | + | Chr8:52005330-52005349 | MsG0880044957.01.T01:CDS | 30.0% | |
| AATAACAAAACAACCGATAG+TGG | + | Chr8:52005981-52006000 | MsG0880044957.01.T01:CDS | 30.0% | |
| ACTGTCAAGTAATTCAGATT+CGG | + | Chr8:52004709-52004728 | MsG0880044957.01.T01:intron | 30.0% | |
| ACTTTGAACTCAAAGATAGA+TGG | + | Chr8:52005155-52005174 | MsG0880044957.01.T01:intron | 30.0% | |
| GATTCCTTTATATGAACTAC+TGG | + | Chr8:52004649-52004668 | MsG0880044957.01.T01:CDS | 30.0% | |
| GTTCATATAGTAACTTTGAC+TGG | + | Chr8:52005685-52005704 | MsG0880044957.01.T01:CDS | 30.0% | |
| TATCATTAGTAGTCCACTAT+CGG | - | Chr8:52005997-52006016 | None:intergenic | 30.0% | |
| TGGTTCCTTTACTAGAAATT+TGG | + | Chr8:52005239-52005258 | MsG0880044957.01.T01:intron | 30.0% | |
| ! | CTATCTTTGAGTTCAAAGTT+TGG | - | Chr8:52005154-52005173 | None:intergenic | 30.0% |
| ! | TTTAGAATGACTGACTGAAT+TGG | - | Chr8:52005019-52005038 | None:intergenic | 30.0% |
| !! | AATAATGTTGGTACTGATGA+AGG | + | Chr8:52005531-52005550 | MsG0880044957.01.T01:CDS | 30.0% |
| !! | ATTTCTAGTAAAGGAACCAT+TGG | - | Chr8:52005238-52005257 | None:intergenic | 30.0% |
| !! | CAGTCATTCTAAAGTTGAAT+TGG | + | Chr8:52005026-52005045 | MsG0880044957.01.T01:CDS | 30.0% |
| !! | CTTCAGTTAAAAGTTTTGAC+TGG | + | Chr8:52005931-52005950 | MsG0880044957.01.T01:CDS | 30.0% |
| !!! | GATCTGGTTAGTTTTTTGAT+CGG | + | Chr8:52004772-52004791 | MsG0880044957.01.T01:intron | 30.0% |
| AACCAAGATACCTGATATTG+AGG | + | Chr8:52005295-52005314 | MsG0880044957.01.T01:CDS | 35.0% | |
| CCTTTACTAGAAATTTGGAC+TGG | + | Chr8:52005244-52005263 | MsG0880044957.01.T01:intron | 35.0% | |
| CTACACAATTCAGAGATAAC+TGG | + | Chr8:52005598-52005617 | MsG0880044957.01.T01:CDS | 35.0% | |
| GATTCATGGAATGATTTCAC+TGG | + | Chr8:52005567-52005586 | MsG0880044957.01.T01:CDS | 35.0% | |
| GTCATTTCAAATTTCCAGTC+TGG | - | Chr8:52005624-52005643 | None:intergenic | 35.0% | |
| GTTATCTCTGAATTGTGTAG+TGG | - | Chr8:52005598-52005617 | None:intergenic | 35.0% | |
| TAATTTCAGATATGCCAGTC+TGG | - | Chr8:52005866-52005885 | None:intergenic | 35.0% | |
| TACTGGATTTGGAAATTCGA+TGG | + | Chr8:52004666-52004685 | MsG0880044957.01.T01:CDS | 35.0% | |
| TCTGCAATCTTTGTATCGTT+GGG | - | Chr8:52005654-52005673 | None:intergenic | 35.0% | |
| TGATTTCAATCCTTCACATC+CGG | + | Chr8:52005098-52005117 | MsG0880044957.01.T01:CDS | 35.0% | |
| TTCTGCAATCTTTGTATCGT+TGG | - | Chr8:52005655-52005674 | None:intergenic | 35.0% | |
| TTTCTAACAGGGACTTTAAC+TGG | + | Chr8:52005483-52005502 | MsG0880044957.01.T01:intron | 35.0% | |
| ! | ACTTCTTCTTTTCCGTATGA+TGG | - | Chr8:52005213-52005232 | None:intergenic | 35.0% |
| ! | CACTGATTATCATTGATGCA+TGG | + | Chr8:52005772-52005791 | MsG0880044957.01.T01:CDS | 35.0% |
| ! | CTAGAAATTTGGACTGGATA+AGG | + | Chr8:52005250-52005269 | MsG0880044957.01.T01:intron | 35.0% |
| ! | GATGCATGGAATGATTTTAC+TGG | + | Chr8:52005344-52005363 | MsG0880044957.01.T01:CDS | 35.0% |
| ! | TGTTATTGCTAACTTGCCAT+TGG | - | Chr8:52005968-52005987 | None:intergenic | 35.0% |
| !! | CCAGTCCAAATTTCTAGTAA+AGG | - | Chr8:52005247-52005266 | None:intergenic | 35.0% |
| !! | TCGGCTTTTGAAAGAAATGT+AGG | + | Chr8:52004827-52004846 | MsG0880044957.01.T01:CDS | 35.0% |
| !!! | AAAAGTTTTGACTGGATGCA+AGG | + | Chr8:52005939-52005958 | MsG0880044957.01.T01:CDS | 35.0% |
| AAATTTCCGGCAGTCATGTT+TGG | - | Chr8:52005410-52005429 | None:intergenic | 40.0% | |
| AACATGCATCAAGCAGAACA+AGG | + | Chr8:52004609-52004628 | MsG0880044957.01.T01:CDS | 40.0% | |
| AACTTCAAGTCTGCTAGTTG+TGG | + | Chr8:52004977-52004996 | MsG0880044957.01.T01:intron | 40.0% | |
| AAGCCACTCCATACATCAAA+TGG | - | Chr8:52006028-52006047 | None:intergenic | 40.0% | |
| AATTTCCGGCAGTCATGTTT+GGG | - | Chr8:52005409-52005428 | None:intergenic | 40.0% | |
| ACTCCATACATCAAATGGGT+CGG | - | Chr8:52006023-52006042 | None:intergenic | 40.0% | |
| AGCCACTCCATACATCAAAT+GGG | - | Chr8:52006027-52006046 | None:intergenic | 40.0% | |
| AGCCTCAATATCAGGTATCT+TGG | - | Chr8:52005300-52005319 | None:intergenic | 40.0% | |
| ATGCAAAATGATCATGGCAG+GGG | + | Chr8:52005708-52005727 | MsG0880044957.01.T01:CDS | 40.0% | |
| CAAACTCAACGAACTTTCAC+CGG | - | Chr8:52004743-52004762 | None:intergenic | 40.0% | |
| CATGATACCAAAACAGCAGA+GGG | + | Chr8:52005897-52005916 | MsG0880044957.01.T01:CDS | 40.0% | |
| CTGAAACCAATCATCTTCAC+CGG | - | Chr8:52005120-52005139 | None:intergenic | 40.0% | |
| GAAAGTTCGTTGAGTTTGTC+TGG | + | Chr8:52004745-52004764 | MsG0880044957.01.T01:intron | 40.0% | |
| GAAAGTTTCTGTCGCTGTAA+AGG | + | Chr8:52005068-52005087 | MsG0880044957.01.T01:CDS | 40.0% | |
| GACTGGATGCAAAATGATCA+TGG | + | Chr8:52005702-52005721 | MsG0880044957.01.T01:CDS | 40.0% | |
| GAGTGATACAAAAACAGCAG+AGG | + | Chr8:52005448-52005467 | MsG0880044957.01.T01:intron | 40.0% | |
| GATGCAAAATGATCATGGCA+GGG | + | Chr8:52005707-52005726 | MsG0880044957.01.T01:CDS | 40.0% | |
| GGAAAAGAAGAAGTTGCCAA+TGG | + | Chr8:52005219-52005238 | MsG0880044957.01.T01:intron | 40.0% | |
| GGCTGGAAATAATACCAGAA+GGG | - | Chr8:52005388-52005407 | None:intergenic | 40.0% | |
| GTTGAATTGGATACGGTATC+TGG | + | Chr8:52005039-52005058 | MsG0880044957.01.T01:CDS | 40.0% | |
| TAACAGGGACTTTAACTGGA+TGG | + | Chr8:52005487-52005506 | MsG0880044957.01.T01:intron | 40.0% | |
| TCATCAGTAGCCTCAATATC+AGG | - | Chr8:52005308-52005327 | None:intergenic | 40.0% | |
| TCATGATACCAAAACAGCAG+AGG | + | Chr8:52005896-52005915 | MsG0880044957.01.T01:CDS | 40.0% | |
| TGGATACGGTATCTGGATAT+GGG | + | Chr8:52005046-52005065 | MsG0880044957.01.T01:CDS | 40.0% | |
| TTGGATACGGTATCTGGATA+TGG | + | Chr8:52005045-52005064 | MsG0880044957.01.T01:CDS | 40.0% | |
| ! | GATGCATGGAGTGATTTTAC+TGG | + | Chr8:52005786-52005805 | MsG0880044957.01.T01:CDS | 40.0% |
| !! | AAGATTGCAGAAAGTGCTGA+TGG | + | Chr8:52005663-52005682 | MsG0880044957.01.T01:CDS | 40.0% |
| !! | AAGCTTCAGAAGCATCAAGT+GGG | + | Chr8:52004909-52004928 | MsG0880044957.01.T01:CDS | 40.0% |
| !! | CTTTTCCGTATGATGGAGAT+CGG | - | Chr8:52005206-52005225 | None:intergenic | 40.0% |
| !! | TTCAGATTCGGAAGCATTTC+CGG | + | Chr8:52004721-52004740 | MsG0880044957.01.T01:intron | 40.0% |
| !!! | AATGATTTTACTGGCTCAGC+CGG | + | Chr8:52005353-52005372 | MsG0880044957.01.T01:CDS | 40.0% |
| !!! | TGGAGTGATTTTACTGGTTC+AGG | + | Chr8:52005792-52005811 | MsG0880044957.01.T01:CDS | 40.0% |
| AGCATCAAGTGGGTCTATAG+AGG | + | Chr8:52004919-52004938 | MsG0880044957.01.T01:CDS | 45.0% | |
| ATCATCTTCACCGGATGTGA+AGG | - | Chr8:52005111-52005130 | None:intergenic | 45.0% | |
| ATGCCGACCCATTTGATGTA+TGG | + | Chr8:52006017-52006036 | MsG0880044957.01.T01:CDS | 45.0% | |
| CACAGAGTGTGAAACACTAC+TGG | - | Chr8:52005835-52005854 | None:intergenic | 45.0% | |
| CAGTGTGTCTGAGCAGAATT+CGG | + | Chr8:52004808-52004827 | MsG0880044957.01.T01:intron | 45.0% | |
| CATGTTCTTCCACACAACGT+CGG | - | Chr8:52004595-52004614 | None:intergenic | 45.0% | |
| GACCCATTTGATGTATGGAG+TGG | + | Chr8:52006022-52006041 | MsG0880044957.01.T01:CDS | 45.0% | |
| GACTGGATAAGGATGACCAA+TGG | + | Chr8:52005261-52005280 | MsG0880044957.01.T01:CDS | 45.0% | |
| GAGTGTGAAACACTACTGGA+AGG | - | Chr8:52005831-52005850 | None:intergenic | 45.0% | |
| GGATGCAAAATGATCATGGC+AGG | + | Chr8:52005706-52005725 | MsG0880044957.01.T01:CDS | 45.0% | |
| GGGCTGGAAATAATACCAGA+AGG | - | Chr8:52005389-52005408 | None:intergenic | 45.0% | |
| TCAAAGATAGATGGCCGTCT+GGG | + | Chr8:52005164-52005183 | MsG0880044957.01.T01:intron | 45.0% | |
| TCACATCCGGTGAAGATGAT+TGG | + | Chr8:52005111-52005130 | MsG0880044957.01.T01:CDS | 45.0% | |
| TCTGTGATAGAAGACCAGAC+TGG | + | Chr8:52005849-52005868 | MsG0880044957.01.T01:CDS | 45.0% | |
| TGAATTGGACTCTCGTGAAC+AGG | - | Chr8:52005004-52005023 | None:intergenic | 45.0% | |
| TGGTTTCACTCTCTTGCCAT+TGG | - | Chr8:52005280-52005299 | None:intergenic | 45.0% | |
| ! | CAGAGTGGTGATTCCTTTTC+CGG | + | Chr8:52004944-52004963 | MsG0880044957.01.T01:CDS | 45.0% |
| ! | TGGTGATTCCTTTTCCGGTT+GGG | + | Chr8:52004949-52004968 | MsG0880044957.01.T01:intron | 45.0% |
| !! | ATTAGCACCCTCTGCTGTTT+TGG | - | Chr8:52005907-52005926 | None:intergenic | 45.0% |
| !! | CAAGCTTCAGAAGCATCAAG+TGG | + | Chr8:52004908-52004927 | MsG0880044957.01.T01:CDS | 45.0% |
| !! | CACTTGATGCTTCTGAAGCT+TGG | - | Chr8:52004910-52004929 | None:intergenic | 45.0% |
| !! | GAGTTTGTCTGGTGTTGATC+TGG | + | Chr8:52004756-52004775 | MsG0880044957.01.T01:intron | 45.0% |
| ACTGGATGCAAGGTGACCAA+TGG | + | Chr8:52005949-52005968 | MsG0880044957.01.T01:CDS | 50.0% | |
| ATGGCAGGGGAGCAATAACA+AGG | + | Chr8:52005721-52005740 | MsG0880044957.01.T01:CDS | 50.0% | |
| CTCAAAGATAGATGGCCGTC+TGG | + | Chr8:52005163-52005182 | MsG0880044957.01.T01:intron | 50.0% | |
| GGAAATTCGATGGCCTTCTG+AGG | + | Chr8:52004676-52004695 | MsG0880044957.01.T01:CDS | 50.0% | |
| GGGTCTATAGAGGATCAGAG+TGG | + | Chr8:52004929-52004948 | MsG0880044957.01.T01:CDS | 50.0% | |
| GTCGTTTCCAACTTCCCAGA+CGG | - | Chr8:52005181-52005200 | None:intergenic | 50.0% | |
| TCAGAGATAACTGGCCAGAC+TGG | + | Chr8:52005607-52005626 | MsG0880044957.01.T01:CDS | 50.0% | |
| ! | AATTCGATGGCCTTCTGAGG+CGG | + | Chr8:52004679-52004698 | MsG0880044957.01.T01:CDS | 50.0% |
| ! | GTGGTGATTCCTTTTCCGGT+TGG | + | Chr8:52004948-52004967 | MsG0880044957.01.T01:intron | 50.0% |
| ! | TGATTCCTTTTCCGGTTGGG+AGG | + | Chr8:52004952-52004971 | MsG0880044957.01.T01:intron | 50.0% |
| ! | TTCCGTATGATGGAGATCGG+CGG | - | Chr8:52005203-52005222 | None:intergenic | 50.0% |
| !! | ACCAGAAGGGTTTTGTGTGC+CGG | - | Chr8:52005375-52005394 | None:intergenic | 50.0% |
| CTTGAAGTTCGCCTCCCAAC+CGG | - | Chr8:52004966-52004985 | None:intergenic | 55.0% | |
| GACCGCCGATCTCCATCATA+CGG | + | Chr8:52005198-52005217 | MsG0880044957.01.T01:intron | 55.0% | |
| TAGATGGCCGTCTGGGAAGT+TGG | + | Chr8:52005171-52005190 | MsG0880044957.01.T01:intron | 55.0% | |
| TCCAGCCCAAACATGACTGC+CGG | + | Chr8:52005401-52005420 | MsG0880044957.01.T01:intron | 55.0% | |
| AGTGCTCTCTCCGCCTCAGA+AGG | - | Chr8:52004692-52004711 | None:intergenic | 60.0% | |
| GCCGGCACACAAAACCCTTC+TGG | + | Chr8:52005371-52005390 | MsG0880044957.01.T01:CDS | 60.0% | |
| GTTCGCCTCCCAACCGGAAA+AGG | - | Chr8:52004960-52004979 | None:intergenic | 60.0% | |
| TCCGGCAGTCATGTTTGGGC+TGG | - | Chr8:52005405-52005424 | None:intergenic | 60.0% | |
| !! | ATGGTGGCACCGACGTTGTG+TGG | + | Chr8:52004583-52004602 | MsG0880044957.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 52004581 | 52006058 | 52004581 | ID=MsG0880044957.01;Name=MsG0880044957.01 |
| Chr8 | mRNA | 52004581 | 52006058 | 52004581 | ID=MsG0880044957.01.T01;Parent=MsG0880044957.01;Name=MsG0880044957.01.T01;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|1|0.8|5|0|368 |
| Chr8 | exon | 52004581 | 52004711 | 52004581 | ID=MsG0880044957.01.T01:exon:22195;Parent=MsG0880044957.01.T01 |
| Chr8 | exon | 52004811 | 52004965 | 52004811 | ID=MsG0880044957.01.T01:exon:22196;Parent=MsG0880044957.01.T01 |
| Chr8 | exon | 52005025 | 52005140 | 52005025 | ID=MsG0880044957.01.T01:exon:22197;Parent=MsG0880044957.01.T01 |
| Chr8 | exon | 52005254 | 52005392 | 52005254 | ID=MsG0880044957.01.T01:exon:22198;Parent=MsG0880044957.01.T01 |
| Chr8 | exon | 52005493 | 52006058 | 52005493 | ID=MsG0880044957.01.T01:exon:22199;Parent=MsG0880044957.01.T01 |
| Chr8 | CDS | 52004581 | 52004711 | 52004581 | ID=MsG0880044957.01.T01:cds;Parent=MsG0880044957.01.T01 |
| Chr8 | CDS | 52004811 | 52004965 | 52004811 | ID=MsG0880044957.01.T01:cds;Parent=MsG0880044957.01.T01 |
| Chr8 | CDS | 52005025 | 52005140 | 52005025 | ID=MsG0880044957.01.T01:cds;Parent=MsG0880044957.01.T01 |
| Chr8 | CDS | 52005254 | 52005392 | 52005254 | ID=MsG0880044957.01.T01:cds;Parent=MsG0880044957.01.T01 |
| Chr8 | CDS | 52005493 | 52006058 | 52005493 | ID=MsG0880044957.01.T01:cds;Parent=MsG0880044957.01.T01 |
| Gene Sequence |
| Protein sequence |
