Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148060 | sp|Q2W1A2|RL33_MAGSA | 58.491 | 53 | 21 | 1 | 6 | 57 | 3 | 55 | 6.25e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148060 | G7I920 | 100.000 | 48 | 0 | 0 | 1 | 48 | 1 | 48 | 1.99e-26 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0148060 | 0.823915 | 1.071231e-53 | -8.615850e-47 |
| Msa0017770 | Msa0148060 | -0.803888 | 2.811287e-49 | -8.615850e-47 |
| Msa0025730 | Msa0148060 | 0.816109 | 6.550532e-52 | -8.615850e-47 |
| Msa0027230 | Msa0148060 | 0.802885 | 4.535948e-49 | -8.615850e-47 |
| Msa0027260 | Msa0148060 | 0.861591 | 9.213249e-64 | -8.615850e-47 |
| Msa0028420 | Msa0148060 | 0.812240 | 4.683025e-51 | -8.615850e-47 |
| Msa0055180 | Msa0148060 | 0.813896 | 2.028965e-51 | -8.615850e-47 |
| Msa0055190 | Msa0148060 | 0.839165 | 1.864929e-57 | -8.615850e-47 |
| Msa0056470 | Msa0148060 | 0.855197 | 7.415718e-62 | -8.615850e-47 |
| Msa0061080 | Msa0148060 | 0.802598 | 5.200380e-49 | -8.615850e-47 |
| Msa0090360 | Msa0148060 | 0.812745 | 3.632837e-51 | -8.615850e-47 |
| Msa0094470 | Msa0148060 | 0.820873 | 5.449660e-53 | -8.615850e-47 |
| Msa0100740 | Msa0148060 | 0.819396 | 1.187163e-52 | -8.615850e-47 |
| Msa0114870 | Msa0148060 | 0.831256 | 1.850366e-55 | -8.615850e-47 |
| Msa0127310 | Msa0148060 | 0.801121 | 1.045677e-48 | -8.615850e-47 |
| Msa0128860 | Msa0148060 | 0.814711 | 1.340607e-51 | -8.615850e-47 |
| Msa0140820 | Msa0148060 | 0.860251 | 2.353211e-63 | -8.615850e-47 |
| Msa0145440 | Msa0148060 | 0.800770 | 1.233397e-48 | -8.615850e-47 |
| Msa0148060 | Msa0149200 | 0.820452 | 6.808434e-53 | -8.615850e-47 |
| Msa0148060 | Msa0159170 | 0.800015 | 1.756722e-48 | -8.615850e-47 |
| Msa0148060 | Msa0174730 | 0.816967 | 4.209109e-52 | -8.615850e-47 |
| Msa0148060 | Msa0184040 | 0.813444 | 2.552434e-51 | -8.615850e-47 |
| Msa0148060 | Msa0189700 | 0.813051 | 3.112341e-51 | -8.615850e-47 |
| Msa0148060 | Msa0199880 | 0.819589 | 1.072666e-52 | -8.615850e-47 |
| Msa0148060 | Msa0220720 | 0.819140 | 1.357590e-52 | -8.615850e-47 |
| Msa0148060 | Msa0229230 | 0.829370 | 5.346175e-55 | -8.615850e-47 |
| Msa0148060 | Msa0229760 | 0.813113 | 3.016685e-51 | -8.615850e-47 |
| Msa0148060 | Msa0231980 | 0.829800 | 4.203118e-55 | -8.615850e-47 |
| Msa0148060 | Msa0232010 | 0.829124 | 6.133791e-55 | -8.615850e-47 |
| Msa0148060 | Msa0232050 | 0.824300 | 8.696562e-54 | -8.615850e-47 |
| Msa0148060 | Msa0232080 | 0.831342 | 1.762638e-55 | -8.615850e-47 |
| Msa0148060 | Msa0242410 | 0.813950 | 1.974690e-51 | -8.615850e-47 |
| Msa0148060 | Msa0262050 | 0.802984 | 4.327409e-49 | -8.615850e-47 |
| Msa0148060 | Msa0264150 | 0.828887 | 7.001977e-55 | -8.615850e-47 |
| Msa0148060 | Msa0280610 | 0.833874 | 4.150600e-56 | -8.615850e-47 |
| Msa0148060 | Msa0337240 | 0.808642 | 2.802044e-50 | -8.615850e-47 |
| Msa0148060 | Msa0366890 | 0.814593 | 1.423881e-51 | -8.615850e-47 |
| Msa0148060 | Msa0369450 | 0.874135 | 8.555942e-68 | -8.615850e-47 |
| Msa0148060 | Msa0380300 | 0.831979 | 1.227817e-55 | -8.615850e-47 |
| Msa0148060 | Msa0385580 | 0.809117 | 2.216598e-50 | -8.615850e-47 |
| Msa0148060 | Msa0387730 | 0.802333 | 5.896966e-49 | -8.615850e-47 |
| Msa0148060 | Msa0388700 | 0.819503 | 1.122616e-52 | -8.615850e-47 |
| Msa0148060 | Msa0395820 | 0.841210 | 5.457275e-58 | -8.615850e-47 |
| Msa0148060 | Msa0449210 | 0.821837 | 3.264922e-53 | -8.615850e-47 |
| Msa0148060 | Msa0468330 | 0.824646 | 7.209849e-54 | -8.615850e-47 |
| Msa0148060 | Msa0481530 | 0.806545 | 7.810136e-50 | -8.615850e-47 |
| Msa0148060 | Msa0482650 | 0.816706 | 4.817052e-52 | -8.615850e-47 |
| Msa0148060 | Msa0493410 | 0.823640 | 1.242011e-53 | -8.615850e-47 |
| Msa0148060 | Msa0497210 | 0.803639 | 3.166695e-49 | -8.615850e-47 |
| Msa0148060 | Msa0497490 | 0.821195 | 4.594393e-53 | -8.615850e-47 |
| Msa0148060 | Msa0518390 | 0.830845 | 2.334649e-55 | -8.615850e-47 |
| Msa0148060 | Msa0518450 | 0.816000 | 6.926910e-52 | -8.615850e-47 |
| Msa0148060 | Msa0521050 | 0.814371 | 1.594136e-51 | -8.615850e-47 |
| Msa0148060 | Msa0524500 | 0.847130 | 1.404888e-59 | -8.615850e-47 |
| Msa0148060 | Msa0548240 | 0.812664 | 3.783670e-51 | -8.615850e-47 |
| Msa0148060 | Msa0556060 | 0.823281 | 1.506861e-53 | -8.615850e-47 |
| Msa0148060 | Msa0581110 | 0.837507 | 4.991861e-57 | -8.615850e-47 |
| Msa0148060 | Msa0588360 | 0.825571 | 4.359753e-54 | -8.615850e-47 |
| Msa0148060 | Msa0607050 | 0.810848 | 9.400884e-51 | -8.615850e-47 |
| Msa0148060 | Msa0608320 | 0.808827 | 2.558142e-50 | -8.615850e-47 |
| Msa0148060 | Msa0615710 | 0.820582 | 6.356580e-53 | -8.615850e-47 |
| Msa0148060 | Msa0647500 | 0.817647 | 2.959004e-52 | -8.615850e-47 |
| Msa0148060 | Msa0661300 | 0.850724 | 1.411097e-60 | -8.615850e-47 |
| Msa0148060 | Msa0662500 | 0.823149 | 1.617698e-53 | -8.615850e-47 |
| Msa0148060 | Msa0689260 | 0.839937 | 1.174805e-57 | -8.615850e-47 |
| Msa0148060 | Msa0690150 | 0.825133 | 5.535537e-54 | -8.615850e-47 |
| Msa0148060 | Msa0692840 | 0.801295 | 9.633406e-49 | -8.615850e-47 |
| Msa0148060 | Msa0693370 | 0.822890 | 1.859044e-53 | -8.615850e-47 |
| Msa0148060 | Msa0709500 | 0.812127 | 4.957769e-51 | -8.615850e-47 |
| Msa0148060 | Msa0711780 | 0.810512 | 1.111034e-50 | -8.615850e-47 |
| Msa0148060 | Msa0722020 | 0.803804 | 2.926906e-49 | -8.615850e-47 |
| Msa0148060 | Msa0763020 | 0.815645 | 8.314000e-52 | -8.615850e-47 |
| Msa0148060 | Msa0763070 | 0.820565 | 6.415335e-53 | -8.615850e-47 |
| Msa0148060 | Msa0783790 | 0.805643 | 1.209022e-49 | -8.615850e-47 |
| Msa0148060 | Msa0784200 | 0.831893 | 1.288997e-55 | -8.615850e-47 |
| Msa0148060 | Msa0790850 | 0.807177 | 5.741917e-50 | -8.615850e-47 |
| Msa0148060 | Msa0794670 | 0.805560 | 1.258602e-49 | -8.615850e-47 |
| Msa0148060 | Msa0818310 | 0.829329 | 5.472057e-55 | -8.615850e-47 |
| Msa0148060 | Msa0830090 | 0.806994 | 6.277369e-50 | -8.615850e-47 |
| Msa0148060 | Msa0841940 | 0.801259 | 9.795462e-49 | -8.615850e-47 |
| Msa0148060 | Msa0858770 | 0.844331 | 8.078364e-59 | -8.615850e-47 |
| Msa0148060 | Msa0881290 | 0.813872 | 2.053794e-51 | -8.615850e-47 |
| Msa0148060 | Msa0902760 | 0.850872 | 1.282457e-60 | -8.615850e-47 |
| Msa0148060 | Msa0953310 | 0.810233 | 1.276120e-50 | -8.615850e-47 |
| Msa0148060 | Msa0968590 | 0.828870 | 7.070609e-55 | -8.615850e-47 |
| Msa0148060 | Msa0989540 | 0.809900 | 1.505289e-50 | -8.615850e-47 |
| Msa0148060 | Msa1006840 | 0.822893 | 1.856530e-53 | -8.615850e-47 |
| Msa0148060 | Msa1013400 | 0.851896 | 6.583659e-61 | -8.615850e-47 |
| Msa0148060 | Msa1019260 | 0.808260 | 3.379434e-50 | -8.615850e-47 |
| Msa0148060 | Msa1078170 | 0.802653 | 5.066608e-49 | -8.615850e-47 |
| Msa0148060 | Msa1081150 | 0.839343 | 1.677173e-57 | -8.615850e-47 |
| Msa0148060 | Msa1081930 | 0.849720 | 2.698336e-60 | -8.615850e-47 |
| Msa0148060 | Msa1093530 | 0.852313 | 5.009543e-61 | -8.615850e-47 |
| Msa0148060 | Msa1093840 | 0.804668 | 1.934477e-49 | -8.615850e-47 |
| Msa0148060 | Msa1100050 | 0.804921 | 1.712400e-49 | -8.615850e-47 |
| Msa0148060 | Msa1102740 | 0.805635 | 1.213848e-49 | -8.615850e-47 |
| Msa0148060 | Msa1104140 | 0.817561 | 3.094030e-52 | -8.615850e-47 |
| Msa0148060 | Msa1123380 | 0.822159 | 2.750243e-53 | -8.615850e-47 |
| Msa0148060 | Msa1126510 | 0.831099 | 2.022926e-55 | -8.615850e-47 |
| Msa0148060 | Msa1126830 | 0.834849 | 2.362962e-56 | -8.615850e-47 |
| Msa0148060 | Msa1128600 | 0.807925 | 3.983731e-50 | -8.615850e-47 |
| Msa0148060 | Msa1148910 | 0.823911 | 1.073422e-53 | -8.615850e-47 |
| Msa0148060 | Msa1160590 | 0.819309 | 1.242790e-52 | -8.615850e-47 |
| Msa0148060 | Msa1165940 | 0.876217 | 1.663900e-68 | -8.615850e-47 |
| Msa0148060 | Msa1166860 | 0.813591 | 2.368588e-51 | -8.615850e-47 |
| Msa0148060 | Msa1171360 | 0.809248 | 2.078299e-50 | -8.615850e-47 |
| Msa0148060 | Msa1218600 | 0.839858 | 1.232263e-57 | -8.615850e-47 |
| Msa0148060 | Msa1225700 | 0.812757 | 3.609812e-51 | -8.615850e-47 |
| Msa0148060 | Msa1251160 | 0.839194 | 1.833486e-57 | -8.615850e-47 |
| Msa0148060 | Msa1257510 | 0.814171 | 1.764671e-51 | -8.615850e-47 |
| Msa0148060 | Msa1358250 | 0.838387 | 2.963912e-57 | -8.615850e-47 |
| Msa0148060 | Msa1367590 | 0.813951 | 1.973863e-51 | -8.615850e-47 |
| Msa0148060 | Msa1379760 | 0.807978 | 3.881669e-50 | -8.615850e-47 |
| Msa0148060 | Msa1386780 | 0.810720 | 1.001713e-50 | -8.615850e-47 |
| Msa0148060 | Msa1392780 | 0.829323 | 5.488127e-55 | -8.615850e-47 |
| Msa0148060 | Msa1394290 | 0.837223 | 5.900059e-57 | -8.615850e-47 |
| Msa0148060 | Msa1419870 | 0.811614 | 6.410097e-51 | -8.615850e-47 |
| Msa0148060 | Msa1432420 | 0.811222 | 7.799884e-51 | -8.615850e-47 |
| Msa0148060 | Msa1432700 | 0.810528 | 1.102012e-50 | -8.615850e-47 |
| Msa0148060 | Msa1433390 | 0.808550 | 2.930579e-50 | -8.615850e-47 |
| Msa0148060 | Msa1451160 | 0.821287 | 4.375599e-53 | -8.615850e-47 |
| Msa0148060 | Msa1457920 | 0.832357 | 9.902127e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148060 | MtrunA17_Chr1g0151021 | 100.000 | 48 | 0 | 0 | 1 | 48 | 1 | 48 | 3.83e-30 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148060 | AT5G18790.1 | 73.469 | 49 | 12 | 1 | 1 | 48 | 1 | 49 | 3.68e-19 | 73.6 |
| Msa0148060 | AT3G06320.1 | 73.469 | 49 | 12 | 1 | 1 | 48 | 1 | 49 | 3.68e-19 | 73.6 |
Find 19 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATCATGATGGTCATTC+AGG | 0.251774 | 1_4:+8266758 | Msa0148060:CDS |
| CTATATTGAGGGTCTTAAAT+TGG | 0.270437 | 1_4:+8266736 | Msa0148060:CDS |
| CTTGTGTCTGCTGCGGGGAC+TGG | 0.330521 | 1_4:+8265650 | Msa0148060:CDS |
| CTTTCGAAACTCAAGTTTCT+CGG | 0.360033 | 1_4:-8265708 | None:intergenic |
| CTGGATTCTTCTATGTTAAG+AGG | 0.413275 | 1_4:+8265669 | Msa0148060:CDS |
| GTGAAACTTGTGTCTGCTGC+GGG | 0.420813 | 1_4:+8265644 | Msa0148060:CDS |
| AGTTTCTCGGTAAACTGTCT+TGG | 0.447698 | 1_4:-8265695 | None:intergenic |
| CTAATCATGATGGTCATTCA+GGG | 0.476963 | 1_4:+8266759 | Msa0148060:CDS |
| CAGCACATGACGATTAACTC+TGG | 0.494495 | 1_4:-8265738 | None:intergenic |
| ATCTTATATAGAAGAGATGT+AGG | 0.499104 | 1_4:+8266708 | Msa0148060:intron |
| ATGGTCATTCAGGGTTTGAA+AGG | 0.515395 | 1_4:+8266768 | Msa0148060:CDS |
| ATGTAGGGAGCTCTATATTG+AGG | 0.518117 | 1_4:+8266724 | Msa0148060:CDS |
| CTTAAATTGGCTAATCATGA+TGG | 0.538841 | 1_4:+8266749 | Msa0148060:CDS |
| TGTAGGGAGCTCTATATTGA+GGG | 0.543050 | 1_4:+8266725 | Msa0148060:CDS |
| AATGGGTAACGCTAAGAAGA+AGG | 0.544811 | 1_4:+8265610 | None:intergenic |
| CGTGAAACTTGTGTCTGCTG+CGG | 0.559210 | 1_4:+8265643 | Msa0148060:CDS |
| AGCACATGACGATTAACTCT+GGG | 0.592000 | 1_4:-8265737 | None:intergenic |
| TCTTATATAGAAGAGATGTA+GGG | 0.607516 | 1_4:+8266709 | Msa0148060:intron |
| TGAAACTTGTGTCTGCTGCG+GGG | 0.708413 | 1_4:+8265645 | Msa0148060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTCATCAATATATATTT+TGG | - | chr1_4:8265973-8265992 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTTTGGAA+CGG | + | chr1_4:8266003-8266022 | Msa0148060:intron | 15.0% |
| !! | AAAATATCACAATAAAAAAC+TGG | - | chr1_4:8266306-8266325 | None:intergenic | 15.0% |
| !! | TGCATATTAAAATTATATAC+AGG | - | chr1_4:8266339-8266358 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAAAATTTGAGG+AGG | + | chr1_4:8266369-8266388 | Msa0148060:intron | 15.0% |
| !!! | GATTTCATCAATATATATTT+TGG | - | chr1_4:8265973-8265992 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTTTGGAA+CGG | + | chr1_4:8266003-8266022 | Msa0148060:intron | 15.0% |
| !! | AAAATATCACAATAAAAAAC+TGG | - | chr1_4:8266306-8266325 | None:intergenic | 15.0% |
| !! | TGCATATTAAAATTATATAC+AGG | - | chr1_4:8266339-8266358 | None:intergenic | 15.0% |
| !!! | TTTTAAATTAAAATTTGAGG+AGG | + | chr1_4:8266369-8266388 | Msa0148060:intron | 15.0% |
| !! | ATTATCACATTCTATATTAC+AGG | + | chr1_4:8265840-8265859 | Msa0148060:intron | 20.0% |
| !! | TCAACAAACAATAAAAAGAT+TGG | - | chr1_4:8265876-8265895 | None:intergenic | 20.0% |
| !!! | CAATATATATTTTGGAAAGT+TGG | - | chr1_4:8265965-8265984 | None:intergenic | 20.0% |
| !!! | TATTGATGAAATCTTATTTC+TGG | + | chr1_4:8265980-8265999 | Msa0148060:intron | 20.0% |
| !!! | ATTGATGAAATCTTATTTCT+GGG | + | chr1_4:8265981-8266000 | Msa0148060:intron | 20.0% |
| !!! | TCTGGGTTTTTTTTTTTTTT+TGG | + | chr1_4:8265998-8266017 | Msa0148060:intron | 20.0% |
| !!! | TCTAACGACTTTAAAAATTA+GGG | - | chr1_4:8266051-8266070 | None:intergenic | 20.0% |
| !!! | ATCTAACGACTTTAAAAATT+AGG | - | chr1_4:8266052-8266071 | None:intergenic | 20.0% |
| !! | ATGAGTAAATATAAGAACAA+GGG | - | chr1_4:8266262-8266281 | None:intergenic | 20.0% |
| !!! | GTTTAAAATTCTTTCAATTG+TGG | - | chr1_4:8266579-8266598 | None:intergenic | 20.0% |
| !! | ATTATCACATTCTATATTAC+AGG | + | chr1_4:8265840-8265859 | Msa0148060:intron | 20.0% |
| !! | TCAACAAACAATAAAAAGAT+TGG | - | chr1_4:8265876-8265895 | None:intergenic | 20.0% |
| !!! | CAATATATATTTTGGAAAGT+TGG | - | chr1_4:8265965-8265984 | None:intergenic | 20.0% |
| !!! | TATTGATGAAATCTTATTTC+TGG | + | chr1_4:8265980-8265999 | Msa0148060:intron | 20.0% |
| !!! | ATTGATGAAATCTTATTTCT+GGG | + | chr1_4:8265981-8266000 | Msa0148060:intron | 20.0% |
| !!! | TCTGGGTTTTTTTTTTTTTT+TGG | + | chr1_4:8265998-8266017 | Msa0148060:intron | 20.0% |
| !!! | TCTAACGACTTTAAAAATTA+GGG | - | chr1_4:8266051-8266070 | None:intergenic | 20.0% |
| !!! | ATCTAACGACTTTAAAAATT+AGG | - | chr1_4:8266052-8266071 | None:intergenic | 20.0% |
| !! | ATGAGTAAATATAAGAACAA+GGG | - | chr1_4:8266262-8266281 | None:intergenic | 20.0% |
| !!! | GTTTAAAATTCTTTCAATTG+TGG | - | chr1_4:8266579-8266598 | None:intergenic | 20.0% |
| ! | TGTTAGTATGCAGTATTATT+TGG | + | chr1_4:8265903-8265922 | Msa0148060:intron | 25.0% |
| ! | GTTAGTATGCAGTATTATTT+GGG | + | chr1_4:8265904-8265923 | Msa0148060:intron | 25.0% |
| ! | ACTCATCTAAATTCATTTCT+AGG | + | chr1_4:8265938-8265957 | Msa0148060:intron | 25.0% |
| !!! | TTTTTTTTTTTTGGAACGGT+TGG | + | chr1_4:8266007-8266026 | Msa0148060:intron | 25.0% |
| !!! | TTTTTTTTTTTGGAACGGTT+GGG | + | chr1_4:8266008-8266027 | Msa0148060:intron | 25.0% |
| ! | CCATATATATGAATCATAGA+AGG | - | chr1_4:8266159-8266178 | None:intergenic | 25.0% |
| ! | CCTTCTATGATTCATATATA+TGG | + | chr1_4:8266156-8266175 | Msa0148060:intron | 25.0% |
| !!! | ACATCATTTGAAGCTTTATT+CGG | + | chr1_4:8266226-8266245 | Msa0148060:intron | 25.0% |
| ! | ATAAGAACAAGGGTAATTAA+TGG | - | chr1_4:8266252-8266271 | None:intergenic | 25.0% |
| ! | CATGAGTAAATATAAGAACA+AGG | - | chr1_4:8266263-8266282 | None:intergenic | 25.0% |
| ! | CTTGTTCTTATATTTACTCA+TGG | + | chr1_4:8266261-8266280 | Msa0148060:intron | 25.0% |
| ! | TTCAAGCAAAATTGTACTTT+GGG | - | chr1_4:8266465-8266484 | None:intergenic | 25.0% |
| ! | TTTCAAGCAAAATTGTACTT+TGG | - | chr1_4:8266466-8266485 | None:intergenic | 25.0% |
| ! | AATGAAAGAGCAATAATCTT+TGG | + | chr1_4:8266484-8266503 | Msa0148060:intron | 25.0% |
| ! | ATGAAAGAGCAATAATCTTT+GGG | + | chr1_4:8266485-8266504 | Msa0148060:intron | 25.0% |
| !! | GAATTTTAAACCAATTTGCA+TGG | + | chr1_4:8266588-8266607 | Msa0148060:intron | 25.0% |
| ! | CATCTCTTCTATATAAGATA+AGG | - | chr1_4:8266707-8266726 | None:intergenic | 25.0% |
| ! | ATCTTATATAGAAGAGATGT+AGG | + | chr1_4:8266708-8266727 | Msa0148060:intron | 25.0% |
| ! | TCTTATATAGAAGAGATGTA+GGG | + | chr1_4:8266709-8266728 | Msa0148060:intron | 25.0% |
| ! | TGTTAGTATGCAGTATTATT+TGG | + | chr1_4:8265903-8265922 | Msa0148060:intron | 25.0% |
| ! | GTTAGTATGCAGTATTATTT+GGG | + | chr1_4:8265904-8265923 | Msa0148060:intron | 25.0% |
| ! | ACTCATCTAAATTCATTTCT+AGG | + | chr1_4:8265938-8265957 | Msa0148060:intron | 25.0% |
| !!! | TTTTTTTTTTTTGGAACGGT+TGG | + | chr1_4:8266007-8266026 | Msa0148060:intron | 25.0% |
| !!! | TTTTTTTTTTTGGAACGGTT+GGG | + | chr1_4:8266008-8266027 | Msa0148060:intron | 25.0% |
| ! | CCATATATATGAATCATAGA+AGG | - | chr1_4:8266159-8266178 | None:intergenic | 25.0% |
| ! | CCTTCTATGATTCATATATA+TGG | + | chr1_4:8266156-8266175 | Msa0148060:intron | 25.0% |
| !!! | ACATCATTTGAAGCTTTATT+CGG | + | chr1_4:8266226-8266245 | Msa0148060:intron | 25.0% |
| ! | ATAAGAACAAGGGTAATTAA+TGG | - | chr1_4:8266252-8266271 | None:intergenic | 25.0% |
| ! | CATGAGTAAATATAAGAACA+AGG | - | chr1_4:8266263-8266282 | None:intergenic | 25.0% |
| ! | CTTGTTCTTATATTTACTCA+TGG | + | chr1_4:8266261-8266280 | Msa0148060:intron | 25.0% |
| ! | TTCAAGCAAAATTGTACTTT+GGG | - | chr1_4:8266465-8266484 | None:intergenic | 25.0% |
| ! | TTTCAAGCAAAATTGTACTT+TGG | - | chr1_4:8266466-8266485 | None:intergenic | 25.0% |
| ! | AATGAAAGAGCAATAATCTT+TGG | + | chr1_4:8266484-8266503 | Msa0148060:intron | 25.0% |
| ! | ATGAAAGAGCAATAATCTTT+GGG | + | chr1_4:8266485-8266504 | Msa0148060:intron | 25.0% |
| !! | GAATTTTAAACCAATTTGCA+TGG | + | chr1_4:8266588-8266607 | Msa0148060:intron | 25.0% |
| ! | CATCTCTTCTATATAAGATA+AGG | - | chr1_4:8266707-8266726 | None:intergenic | 25.0% |
| ! | ATCTTATATAGAAGAGATGT+AGG | + | chr1_4:8266708-8266727 | Msa0148060:intron | 25.0% |
| ! | TCTTATATAGAAGAGATGTA+GGG | + | chr1_4:8266709-8266728 | Msa0148060:intron | 25.0% |
| ! | AGAAGTACAAGATTGTTACA+AGG | - | chr1_4:8265810-8265829 | None:intergenic | 30.0% |
| ATATACCTTCACATGCATAT+AGG | - | chr1_4:8266534-8266553 | None:intergenic | 30.0% | |
| ! | TATATGCATGTGAAGGTATA+TGG | + | chr1_4:8266533-8266552 | Msa0148060:intron | 30.0% |
| !! | GAAGTAACCCATGTTTTAAA+TGG | + | chr1_4:8266678-8266697 | Msa0148060:intron | 30.0% |
| ! | AAGGCAACCATTTAAAACAT+GGG | - | chr1_4:8266688-8266707 | None:intergenic | 30.0% |
| ! | TAAGGCAACCATTTAAAACA+TGG | - | chr1_4:8266689-8266708 | None:intergenic | 30.0% |
| CTATATTGAGGGTCTTAAAT+TGG | + | chr1_4:8266736-8266755 | Msa0148060:CDS | 30.0% | |
| CTTAAATTGGCTAATCATGA+TGG | + | chr1_4:8266749-8266768 | Msa0148060:CDS | 30.0% | |
| ! | AGAAGTACAAGATTGTTACA+AGG | - | chr1_4:8265810-8265829 | None:intergenic | 30.0% |
| ATATACCTTCACATGCATAT+AGG | - | chr1_4:8266534-8266553 | None:intergenic | 30.0% | |
| ! | TATATGCATGTGAAGGTATA+TGG | + | chr1_4:8266533-8266552 | Msa0148060:intron | 30.0% |
| !! | GAAGTAACCCATGTTTTAAA+TGG | + | chr1_4:8266678-8266697 | Msa0148060:intron | 30.0% |
| ! | AAGGCAACCATTTAAAACAT+GGG | - | chr1_4:8266688-8266707 | None:intergenic | 30.0% |
| ! | TAAGGCAACCATTTAAAACA+TGG | - | chr1_4:8266689-8266708 | None:intergenic | 30.0% |
| CTATATTGAGGGTCTTAAAT+TGG | + | chr1_4:8266736-8266755 | Msa0148060:CDS | 30.0% | |
| CTTAAATTGGCTAATCATGA+TGG | + | chr1_4:8266749-8266768 | Msa0148060:CDS | 30.0% | |
| CTGGATTCTTCTATGTTAAG+AGG | + | chr1_4:8265669-8265688 | Msa0148060:CDS | 35.0% | |
| CTTTCGAAACTCAAGTTTCT+CGG | - | chr1_4:8265711-8265730 | None:intergenic | 35.0% | |
| TCTATCTTCTCTTCGTCATA+TGG | + | chr1_4:8266422-8266441 | Msa0148060:intron | 35.0% | |
| TTTCTCCTATATGCATGTGA+AGG | + | chr1_4:8266526-8266545 | Msa0148060:intron | 35.0% | |
| GTATATGGTTTGATGTGAGT+TGG | + | chr1_4:8266548-8266567 | Msa0148060:intron | 35.0% | |
| CAGATGAATGGTTCAATGAA+AGG | + | chr1_4:8266625-8266644 | Msa0148060:intron | 35.0% | |
| TGGTTCAATGAAAGGACTTT+AGG | + | chr1_4:8266633-8266652 | Msa0148060:intron | 35.0% | |
| TTCAATGAAAGGACTTTAGG+AGG | + | chr1_4:8266636-8266655 | Msa0148060:intron | 35.0% | |
| ! | TCAATGAAAGGACTTTAGGA+GGG | + | chr1_4:8266637-8266656 | Msa0148060:intron | 35.0% |
| CTAATCATGATGGTCATTCA+GGG | + | chr1_4:8266759-8266778 | Msa0148060:CDS | 35.0% | |
| CTGGATTCTTCTATGTTAAG+AGG | + | chr1_4:8265669-8265688 | Msa0148060:CDS | 35.0% | |
| CTTTCGAAACTCAAGTTTCT+CGG | - | chr1_4:8265711-8265730 | None:intergenic | 35.0% | |
| TCTATCTTCTCTTCGTCATA+TGG | + | chr1_4:8266422-8266441 | Msa0148060:intron | 35.0% | |
| TTTCTCCTATATGCATGTGA+AGG | + | chr1_4:8266526-8266545 | Msa0148060:intron | 35.0% | |
| GTATATGGTTTGATGTGAGT+TGG | + | chr1_4:8266548-8266567 | Msa0148060:intron | 35.0% | |
| CAGATGAATGGTTCAATGAA+AGG | + | chr1_4:8266625-8266644 | Msa0148060:intron | 35.0% | |
| TGGTTCAATGAAAGGACTTT+AGG | + | chr1_4:8266633-8266652 | Msa0148060:intron | 35.0% | |
| TTCAATGAAAGGACTTTAGG+AGG | + | chr1_4:8266636-8266655 | Msa0148060:intron | 35.0% | |
| ! | TCAATGAAAGGACTTTAGGA+GGG | + | chr1_4:8266637-8266656 | Msa0148060:intron | 35.0% |
| CTAATCATGATGGTCATTCA+GGG | + | chr1_4:8266759-8266778 | Msa0148060:CDS | 35.0% | |
| AGTTTCTCGGTAAACTGTCT+TGG | - | chr1_4:8265698-8265717 | None:intergenic | 40.0% | |
| AGCACATGACGATTAACTCT+GGG | - | chr1_4:8265740-8265759 | None:intergenic | 40.0% | |
| TCGTCATATGGATGAAGAGA+TGG | + | chr1_4:8266434-8266453 | Msa0148060:intron | 40.0% | |
| GGTCGAAAATCCATGCAAAT+TGG | - | chr1_4:8266601-8266620 | None:intergenic | 40.0% | |
| ATTGAACCATTCATCTGTCG+AGG | - | chr1_4:8266622-8266641 | None:intergenic | 40.0% | |
| ATGTAGGGAGCTCTATATTG+AGG | + | chr1_4:8266724-8266743 | Msa0148060:CDS | 40.0% | |
| TGTAGGGAGCTCTATATTGA+GGG | + | chr1_4:8266725-8266744 | Msa0148060:CDS | 40.0% | |
| GCTAATCATGATGGTCATTC+AGG | + | chr1_4:8266758-8266777 | Msa0148060:CDS | 40.0% | |
| ATGGTCATTCAGGGTTTGAA+AGG | + | chr1_4:8266768-8266787 | Msa0148060:CDS | 40.0% | |
| AGTTTCTCGGTAAACTGTCT+TGG | - | chr1_4:8265698-8265717 | None:intergenic | 40.0% | |
| AGCACATGACGATTAACTCT+GGG | - | chr1_4:8265740-8265759 | None:intergenic | 40.0% | |
| TCGTCATATGGATGAAGAGA+TGG | + | chr1_4:8266434-8266453 | Msa0148060:intron | 40.0% | |
| GGTCGAAAATCCATGCAAAT+TGG | - | chr1_4:8266601-8266620 | None:intergenic | 40.0% | |
| ATTGAACCATTCATCTGTCG+AGG | - | chr1_4:8266622-8266641 | None:intergenic | 40.0% | |
| ATGTAGGGAGCTCTATATTG+AGG | + | chr1_4:8266724-8266743 | Msa0148060:CDS | 40.0% | |
| TGTAGGGAGCTCTATATTGA+GGG | + | chr1_4:8266725-8266744 | Msa0148060:CDS | 40.0% | |
| GCTAATCATGATGGTCATTC+AGG | + | chr1_4:8266758-8266777 | Msa0148060:CDS | 40.0% | |
| ATGGTCATTCAGGGTTTGAA+AGG | + | chr1_4:8266768-8266787 | Msa0148060:CDS | 40.0% | |
| CAGCACATGACGATTAACTC+TGG | - | chr1_4:8265741-8265760 | None:intergenic | 45.0% | |
| ! | CATAGAAGGCGTGCAACATA+CGG | - | chr1_4:8266145-8266164 | None:intergenic | 45.0% |
| ! | ATTTGAGGAGGTGCAACAAG+TGG | + | chr1_4:8266381-8266400 | Msa0148060:intron | 45.0% |
| ! | TTTGAGGAGGTGCAACAAGT+GGG | + | chr1_4:8266382-8266401 | Msa0148060:intron | 45.0% |
| TTTCGACCTCGACAGATGAA+TGG | + | chr1_4:8266613-8266632 | Msa0148060:intron | 45.0% | |
| CAGCACATGACGATTAACTC+TGG | - | chr1_4:8265741-8265760 | None:intergenic | 45.0% | |
| ! | CATAGAAGGCGTGCAACATA+CGG | - | chr1_4:8266145-8266164 | None:intergenic | 45.0% |
| ! | ATTTGAGGAGGTGCAACAAG+TGG | + | chr1_4:8266381-8266400 | Msa0148060:intron | 45.0% |
| ! | TTTGAGGAGGTGCAACAAGT+GGG | + | chr1_4:8266382-8266401 | Msa0148060:intron | 45.0% |
| TTTCGACCTCGACAGATGAA+TGG | + | chr1_4:8266613-8266632 | Msa0148060:intron | 45.0% | |
| !!! | TATTTTTAAATTAAAATTTG+AGG | + | chr1_4:8266366-8266385 | Msa0148060:intron | 5.0% |
| !!! | TATTTTTAAATTAAAATTTG+AGG | + | chr1_4:8266366-8266385 | Msa0148060:intron | 5.0% |
| CGTGAAACTTGTGTCTGCTG+CGG | + | chr1_4:8265643-8265662 | Msa0148060:CDS | 50.0% | |
| GTGAAACTTGTGTCTGCTGC+GGG | + | chr1_4:8265644-8265663 | Msa0148060:CDS | 50.0% | |
| TGAAACTTGTGTCTGCTGCG+GGG | + | chr1_4:8265645-8265664 | Msa0148060:CDS | 50.0% | |
| ! | TTGAGGAGGTGCAACAAGTG+GGG | + | chr1_4:8266383-8266402 | Msa0148060:intron | 50.0% |
| ! | TGAAAGGACTTTAGGAGGGC+TGG | + | chr1_4:8266641-8266660 | Msa0148060:intron | 50.0% |
| CGTGAAACTTGTGTCTGCTG+CGG | + | chr1_4:8265643-8265662 | Msa0148060:CDS | 50.0% | |
| GTGAAACTTGTGTCTGCTGC+GGG | + | chr1_4:8265644-8265663 | Msa0148060:CDS | 50.0% | |
| TGAAACTTGTGTCTGCTGCG+GGG | + | chr1_4:8265645-8265664 | Msa0148060:CDS | 50.0% | |
| ! | TTGAGGAGGTGCAACAAGTG+GGG | + | chr1_4:8266383-8266402 | Msa0148060:intron | 50.0% |
| ! | TGAAAGGACTTTAGGAGGGC+TGG | + | chr1_4:8266641-8266660 | Msa0148060:intron | 50.0% |
| !! | GACTTTAGGAGGGCTGGTTG+TGG | + | chr1_4:8266647-8266666 | Msa0148060:intron | 55.0% |
| !! | TTTAGGAGGGCTGGTTGTGG+TGG | + | chr1_4:8266650-8266669 | Msa0148060:intron | 55.0% |
| !! | GACTTTAGGAGGGCTGGTTG+TGG | + | chr1_4:8266647-8266666 | Msa0148060:intron | 55.0% |
| !! | TTTAGGAGGGCTGGTTGTGG+TGG | + | chr1_4:8266650-8266669 | Msa0148060:intron | 55.0% |
| CTTGTGTCTGCTGCGGGGAC+TGG | + | chr1_4:8265650-8265669 | Msa0148060:CDS | 65.0% | |
| CTTGTGTCTGCTGCGGGGAC+TGG | + | chr1_4:8265650-8265669 | Msa0148060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8265611 | 8266805 | 8265611 | ID=Msa0148060;Name=Msa0148060 |
| chr1_4 | mRNA | 8265611 | 8266805 | 8265611 | ID=Msa0148060-mRNA-1;Parent=Msa0148060;Name=Msa0148060-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.5|1|1|2|0|76 |
| chr1_4 | exon | 8265611 | 8265754 | 8265611 | ID=Msa0148060-mRNA-1:exon:3583;Parent=Msa0148060-mRNA-1 |
| chr1_4 | exon | 8266719 | 8266805 | 8266719 | ID=Msa0148060-mRNA-1:exon:3584;Parent=Msa0148060-mRNA-1 |
| chr1_4 | CDS | 8265611 | 8265754 | 8265611 | ID=Msa0148060-mRNA-1:cds;Parent=Msa0148060-mRNA-1 |
| chr1_4 | CDS | 8266719 | 8266805 | 8266719 | ID=Msa0148060-mRNA-1:cds;Parent=Msa0148060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
