AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031360 MtrunA17_Chr1g0189381 98.956 479 4 1 1 479 1 478 0.0 971
Msa0031360 MtrunA17_Chr7g0249451 67.304 471 148 3 9 475 7 475 0.0 659
Msa0031360 MtrunA17_Chr7g0221681 55.149 437 187 3 26 455 24 458 2.91e-176 503
Msa0031360 MtrunA17_Chr7g0265331 39.224 464 256 8 31 475 37 493 8.35e-108 329
Msa0031360 MtrunA17_Chr4g0027681 38.913 460 256 9 36 477 39 491 1.69e-104 320
Msa0031360 MtrunA17_Chr2g0320621 38.866 494 278 9 2 477 1 488 5.13e-103 316
Msa0031360 MtrunA17_Chr1g0179751 39.202 426 234 10 32 441 64 480 5.63e-99 307
Msa0031360 MtrunA17_Chr5g0401601 30.290 449 246 20 31 455 61 466 1.37e-39 151
Msa0031360 MtrunA17_Chr4g0053721 30.729 384 215 15 68 431 79 431 1.55e-34 137
Msa0031360 MtrunA17_Chr3g0130741 27.338 417 248 17 45 440 62 444 1.10e-32 129
Msa0031360 MtrunA17_Chr6g0475351 61.446 83 32 0 112 194 4 86 7.85e-31 114
Msa0031360 MtrunA17_Chr4g0010951 27.972 429 234 17 50 430 44 445 2.09e-30 122
Msa0031360 MtrunA17_Chr5g0435871 28.125 384 229 18 63 431 84 435 7.37e-30 121
Msa0031360 MtrunA17_Chr8g0352661 27.676 383 228 15 68 431 85 437 8.74e-30 120
Msa0031360 MtrunA17_Chr1g0159791 28.392 398 242 18 49 430 39 409 9.98e-30 120
Msa0031360 MtrunA17_Chr3g0130931 29.134 381 219 17 68 431 103 449 3.54e-29 119
Msa0031360 MtrunA17_Chr8g0371351 26.150 413 257 16 39 430 64 449 1.32e-28 118
Msa0031360 MtrunA17_Chr4g0001991 29.049 389 226 16 60 431 163 518 2.26e-28 117
Msa0031360 MtrunA17_Chr5g0435971 27.154 383 234 16 63 431 81 432 3.84e-28 116
Msa0031360 MtrunA17_Chr8g0386441 28.049 410 238 20 39 431 61 430 1.54e-27 114
Msa0031360 MtrunA17_Chr3g0099891 29.211 380 213 15 67 430 115 454 2.71e-27 114
Msa0031360 MtrunA17_Chr5g0395871 28.278 389 219 17 65 432 77 426 5.16e-27 112
Msa0031360 MtrunA17_Chr3g0124421 26.683 416 261 17 39 430 55 450 6.50e-27 113
Msa0031360 MtrunA17_Chr3g0087851 28.235 425 249 19 28 431 48 437 1.02e-26 112
Msa0031360 MtrunA17_Chr2g0307991 29.178 377 221 18 70 431 60 405 1.24e-26 111
Msa0031360 MtrunA17_Chr6g0484901 26.359 368 231 13 70 430 157 491 1.61e-26 112
Msa0031360 MtrunA17_Chr8g0384731 26.847 406 247 19 52 438 58 432 1.66e-26 111
Msa0031360 MtrunA17_Chr5g0406001 27.749 382 224 17 69 430 112 461 2.14e-26 112
Msa0031360 MtrunA17_Chr8g0352671 28.084 381 226 17 68 431 88 437 2.48e-26 110
Msa0031360 MtrunA17_Chr2g0310801 29.144 374 227 15 68 431 89 434 2.78e-26 110
Msa0031360 MtrunA17_Chr3g0095891 29.676 401 220 20 61 430 89 458 5.59e-26 110
Msa0031360 MtrunA17_Chr2g0291201 28.894 398 219 17 62 430 89 451 5.60e-26 110
Msa0031360 MtrunA17_Chr5g0395931 29.630 378 224 17 68 431 87 436 7.27e-26 109
Msa0031360 MtrunA17_Chr8g0371371 27.225 382 232 15 69 434 112 463 1.50e-25 109
Msa0031360 MtrunA17_Chr5g0442921 27.778 396 237 16 61 431 183 554 1.94e-25 109
Msa0031360 MtrunA17_Chr5g0395911 27.778 378 230 16 68 431 66 414 8.00e-25 106
Msa0031360 MtrunA17_Chr5g0419291 26.933 375 231 15 68 430 85 428 9.51e-25 106
Msa0031360 MtrunA17_Chr5g0425141 25.464 377 246 14 69 434 101 453 2.23e-24 106
Msa0031360 MtrunA17_Chr7g0275731 25.587 383 241 13 61 430 133 484 2.30e-24 105
Msa0031360 MtrunA17_Chr6g0484731 28.049 410 249 18 52 440 176 560 2.43e-24 106
Msa0031360 MtrunA17_Chr2g0308001 28.721 383 222 19 70 432 59 410 2.76e-24 105
Msa0031360 MtrunA17_Chr2g0333991 25.935 401 252 16 42 425 58 430 3.60e-24 104
Msa0031360 MtrunA17_Chr1g0210201 25.526 380 238 14 61 430 123 467 2.59e-23 102
Msa0031360 MtrunA17_Chr1g0212321 26.702 382 235 14 61 430 138 486 1.86e-22 100
Msa0031360 MtrunA17_Chr8g0390761 24.427 393 246 13 41 420 91 445 2.34e-22 99.4
Msa0031360 MtrunA17_Chr5g0415951 27.632 380 228 14 70 433 89 437 1.73e-21 96.7
Msa0031360 MtrunA17_Chr2g0310821 27.778 378 222 18 68 433 107 445 1.73e-21 96.7
Msa0031360 MtrunA17_Chr2g0311451 24.818 411 256 16 42 431 58 436 4.81e-21 95.5
Msa0031360 MtrunA17_Chr1g0165201 25.521 384 238 15 61 430 120 469 5.08e-21 95.5
Msa0031360 MtrunA17_Chr2g0310831 25.962 416 258 16 31 431 61 441 5.27e-21 95.5
Msa0031360 MtrunA17_Chr7g0267171 26.303 403 237 18 68 433 89 468 1.10e-20 94.7
Msa0031360 MtrunA17_Chr2g0312941 25.816 337 205 13 63 372 81 399 1.32e-20 94.4
Msa0031360 MtrunA17_Chr4g0019931 35.246 122 78 1 74 194 1 122 2.03e-20 87.0
Msa0031360 MtrunA17_Chr3g0099901 27.778 378 227 15 67 430 140 485 3.37e-19 90.1
Msa0031360 MtrunA17_Chr6g0486981 23.885 381 239 14 70 431 89 437 4.51e-19 89.4
Msa0031360 MtrunA17_Chr3g0110191 25.515 388 228 17 74 435 91 443 5.50e-19 89.4
Msa0031360 MtrunA17_Chr1g0164401 26.203 374 227 19 70 431 93 429 1.05e-18 88.2
Msa0031360 MtrunA17_Chr6g0457401 25.236 424 263 19 28 431 48 437 1.53e-18 87.8
Msa0031360 MtrunA17_Chr2g0309561 23.023 430 271 16 46 430 94 508 2.32e-18 87.8
Msa0031360 MtrunA17_Chr4g0023351 30.677 251 137 12 70 304 59 288 3.49e-18 85.1
Msa0031360 MtrunA17_Chr6g0487471 24.219 384 238 14 68 431 85 435 5.38e-17 83.2
Msa0031360 MtrunA17_Chr4g0061641 26.720 378 225 17 70 431 56 397 5.51e-17 82.8
Msa0031360 MtrunA17_Chr5g0395891 29.653 317 186 16 129 431 20 313 9.22e-17 81.3
Msa0031360 MtrunA17_Chr4g0056211 26.056 426 239 20 63 432 67 472 3.38e-16 80.9
Msa0031360 MtrunA17_Chr3g0112051 27.215 316 180 14 74 364 78 368 1.11e-15 79.0
Msa0031360 MtrunA17_Chr5g0434411 24.611 386 238 18 74 435 86 442 1.31e-14 75.9
Msa0031360 MtrunA17_Chr2g0307461 24.745 392 232 14 70 430 71 430 1.80e-14 75.5
Msa0031360 MtrunA17_Chr7g0239001 27.068 266 155 11 73 321 63 306 1.93e-14 75.1
Msa0031360 MtrunA17_Chr3g0078321 22.667 375 242 15 77 431 67 413 3.58e-14 74.3
Msa0031360 MtrunA17_Chr2g0287841 23.750 400 232 17 63 417 57 428 4.48e-14 74.3
Msa0031360 MtrunA17_Chr2g0287861 23.980 392 229 16 67 417 41 404 8.14e-14 73.2
Msa0031360 MtrunA17_Chr5g0430861 47.945 73 36 2 198 269 34 105 3.05e-13 65.9
Msa0031360 MtrunA17_Chr8g0352691 27.915 283 169 13 160 431 2 260 8.52e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031360 AT1G05840.1 55.188 453 199 2 5 455 13 463 0.0 525
Msa0031360 AT5G36260.1 51.634 459 211 7 24 477 28 480 5.03e-169 485
Msa0031360 AT3G02740.1 50.000 486 221 8 2 471 1 480 3.38e-163 471
Msa0031360 AT1G65240.1 50.549 455 211 8 24 473 24 469 1.77e-158 458
Msa0031360 AT3G02740.2 53.598 403 181 5 69 471 9 405 5.03e-150 434
Msa0031360 AT5G22850.1 39.696 461 255 8 31 474 38 492 1.04e-105 324
Msa0031360 AT2G36670.2 37.764 474 267 7 20 474 35 499 3.34e-102 315
Msa0031360 AT2G36670.1 37.370 479 267 8 20 474 35 504 7.47e-100 309
Msa0031360 AT2G36670.4 39.756 410 234 5 69 474 33 433 9.77e-98 301
Msa0031360 AT2G36670.3 39.756 410 234 5 69 474 33 433 9.77e-98 301
Msa0031360 AT1G08210.1 37.778 450 258 9 7 442 11 452 3.84e-94 294
Msa0031360 AT1G08210.4 37.778 450 258 9 7 442 45 486 8.88e-94 294
Msa0031360 AT1G08210.3 37.778 450 258 9 7 442 59 500 1.13e-93 294
Msa0031360 AT1G08210.2 36.017 472 263 10 7 442 11 479 2.82e-89 282
Msa0031360 AT3G42550.1 25.355 493 280 15 7 478 5 430 8.57e-41 152
Msa0031360 AT5G43100.2 28.833 437 245 19 68 473 74 475 1.66e-37 144
Msa0031360 AT5G43100.1 30.000 380 215 16 68 431 74 418 2.19e-36 142
Msa0031360 AT4G33490.2 27.766 461 266 22 2 439 4 420 2.20e-36 139
Msa0031360 AT2G17760.1 29.197 411 245 16 39 430 66 449 2.75e-35 138
Msa0031360 AT3G50050.1 30.504 377 219 15 68 431 91 437 1.82e-33 134
Msa0031360 AT3G12700.1 27.133 457 271 18 7 431 35 461 7.35e-32 127
Msa0031360 AT3G25700.1 29.293 396 235 16 61 431 75 450 6.29e-31 124
Msa0031360 AT1G44130.1 26.700 397 245 16 52 431 33 400 1.29e-29 120
Msa0031360 AT4G33490.1 29.032 341 201 15 2 336 1 306 9.11e-29 117
Msa0031360 AT1G25510.1 25.858 379 238 12 61 430 139 483 1.31e-28 118
Msa0031360 AT5G10080.1 26.087 391 249 15 69 442 99 466 8.05e-27 114
Msa0031360 AT2G23945.1 27.208 419 252 17 39 430 56 448 2.23e-26 111
Msa0031360 AT1G49050.1 27.273 407 243 21 52 430 187 568 3.35e-26 112
Msa0031360 AT3G51350.1 26.506 415 257 18 39 430 63 452 1.07e-25 110
Msa0031360 AT3G54400.1 25.737 373 231 15 70 431 88 425 1.34e-25 108
Msa0031360 AT3G18490.1 26.190 378 241 13 61 430 153 500 1.46e-25 109
Msa0031360 AT3G59080.1 25.217 460 285 18 2 431 103 533 1.88e-25 109
Msa0031360 AT1G01300.1 27.670 412 223 18 46 431 123 485 2.60e-25 108
Msa0031360 AT4G35880.1 25.333 375 238 17 69 430 106 451 4.19e-25 108
Msa0031360 AT3G51340.2 26.087 414 254 16 39 430 64 447 9.17e-25 107
Msa0031360 AT1G49050.2 26.667 390 235 20 69 430 29 395 1.79e-24 105
Msa0031360 AT5G10770.1 25.995 377 236 15 67 431 129 474 1.31e-23 103
Msa0031360 AT2G03200.1 26.410 390 226 16 67 430 104 458 1.52e-23 103
Msa0031360 AT3G51330.3 27.778 414 254 17 39 430 63 453 7.28e-23 101
Msa0031360 AT3G51330.1 27.778 414 254 17 39 430 63 453 1.01e-22 101
Msa0031360 AT1G77480.2 27.901 405 246 19 44 430 43 419 3.06e-22 99.4
Msa0031360 AT1G77480.1 27.211 441 268 20 45 467 44 449 4.16e-22 99.4
Msa0031360 AT3G20015.1 26.632 383 234 14 61 430 122 470 6.47e-22 98.6
Msa0031360 AT4G30040.1 26.963 382 228 15 63 425 78 427 9.92e-22 97.8
Msa0031360 AT1G49050.3 28.475 295 180 14 52 335 187 461 1.24e-21 97.8
Msa0031360 AT3G61820.1 26.166 386 241 13 61 430 126 483 1.31e-21 97.8
Msa0031360 AT1G31450.1 27.097 465 272 21 7 434 11 445 1.47e-21 97.4
Msa0031360 AT3G51360.1 25.000 424 260 15 35 433 48 438 1.85e-21 97.4
Msa0031360 AT3G51340.1 25.060 419 264 14 39 430 64 459 2.28e-21 97.4
Msa0031360 AT3G51360.9 25.000 424 260 15 35 433 58 448 2.76e-21 97.1
Msa0031360 AT1G64830.1 28.756 386 213 16 68 431 84 429 2.77e-21 96.7
Msa0031360 AT4G35880.2 27.070 314 194 16 69 369 106 397 9.13e-21 95.1
Msa0031360 AT2G42980.1 26.545 437 254 19 28 431 123 525 2.36e-20 94.4
Msa0031360 AT2G28040.1 24.865 370 229 13 70 432 65 392 2.47e-20 93.2
Msa0031360 AT2G28040.2 24.865 370 229 13 70 432 56 383 3.49e-20 92.8
Msa0031360 AT2G28010.1 24.194 372 232 11 69 432 64 393 3.79e-20 92.8
Msa0031360 AT5G45120.1 26.767 467 253 24 25 430 40 478 5.01e-20 93.2
Msa0031360 AT5G33340.1 27.368 380 238 14 63 431 83 435 9.95e-20 92.0
Msa0031360 AT3G51360.7 24.479 384 238 14 69 433 4 354 1.01e-19 91.7
Msa0031360 AT2G35615.1 26.024 415 253 17 46 434 61 447 1.40e-19 91.7
Msa0031360 AT3G52500.1 27.586 406 227 17 68 431 88 468 1.89e-19 91.3
Msa0031360 AT3G51340.3 27.622 286 182 9 39 307 64 341 2.43e-19 90.5
Msa0031360 AT3G51340.4 27.622 286 182 9 39 307 64 341 2.61e-19 90.1
Msa0031360 AT4G30030.1 25.067 371 239 12 70 430 78 419 1.13e-18 88.6
Msa0031360 AT1G79720.1 28.010 382 220 18 70 430 135 482 2.01e-18 88.2
Msa0031360 AT3G51330.2 27.926 376 231 15 39 392 63 420 2.41e-18 87.8
Msa0031360 AT5G37540.1 24.031 387 232 15 74 430 84 438 1.95e-17 85.1
Msa0031360 AT5G10760.1 23.698 384 239 15 63 430 119 464 2.46e-17 84.7
Msa0031360 AT2G28030.1 22.312 372 239 13 69 432 60 389 3.12e-17 84.0
Msa0031360 AT1G09750.1 25.995 377 235 17 68 430 102 448 5.56e-17 83.6
Msa0031360 AT5G07030.1 25.789 380 225 18 70 431 115 455 7.30e-17 83.2
Msa0031360 AT2G28225.1 21.958 378 237 13 69 432 66 399 1.79e-16 81.6
Msa0031360 AT3G51360.6 25.627 359 216 13 35 370 58 388 5.17e-16 80.5
Msa0031360 AT1G66180.1 22.922 397 222 16 74 431 76 427 5.40e-16 80.5
Msa0031360 AT3G51360.5 25.627 359 216 13 35 370 58 388 5.52e-16 80.1
Msa0031360 AT3G51360.10 25.627 359 216 13 35 370 48 378 7.47e-16 80.1
Msa0031360 AT3G51360.4 25.627 359 216 13 35 370 48 378 8.50e-16 79.7
Msa0031360 AT2G28220.1 21.564 422 256 16 29 432 35 399 1.15e-15 79.3
Msa0031360 AT2G39710.1 25.959 339 193 18 74 382 69 379 1.18e-15 79.3
Msa0031360 AT3G51360.2 27.018 285 182 9 35 305 58 330 9.73e-15 75.9
Msa0031360 AT3G59080.2 22.757 457 264 16 2 431 103 497 1.08e-14 76.6
Msa0031360 AT5G02190.1 23.077 390 239 16 79 433 82 445 8.68e-14 73.6

Find 140 sgRNAs with CRISPR-Local

Find 758 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGATAATTTGGTGTTTC+AGG 0.166469 1_1:+58084146 Msa0031360:CDS
GATTAATGAACATACATATT+TGG 0.242714 1_1:-58087122 None:intergenic
GAAGCCCTTGATGGAATAAT+TGG 0.245572 1_1:+58086945 Msa0031360:CDS
TGGACATAGTAGTCCTTCTT+TGG 0.254367 1_1:-58085891 None:intergenic
CCCTCGGATATATTTGATTC+TGG 0.259620 1_1:+58089017 Msa0031360:CDS
AGTGGAGTTGTTCTGACTTT+TGG 0.268756 1_1:-58087095 None:intergenic
TGTCCTTTCCATCCTTAGTT+TGG 0.271260 1_1:-58090688 None:intergenic
GATATATTTGATTCTGGAAA+TGG 0.285563 1_1:+58089023 Msa0031360:CDS
TCATCCGTTGATTTCAATCT+TGG 0.285586 1_1:+58084237 Msa0031360:CDS
TGACTATCTGTTCCAATATA+AGG 0.288332 1_1:+58090218 Msa0031360:CDS
CTTGATGGAATAATTGGTTT+TGG 0.295754 1_1:+58086951 Msa0031360:CDS
CTTGTACGATCTTGAGAATA+TGG 0.302586 1_1:+58093708 Msa0031360:CDS
TCTCCATAAGTTATGCTATA+GGG 0.307360 1_1:-58086239 None:intergenic
CTTCACGATAAAGCTGGTTT+TGG 0.308160 1_1:-58083741 None:intergenic
GTCCTTTCCATCCTTAGTTT+GGG 0.310111 1_1:-58090687 None:intergenic
ACATATGATGGTCCGATTCC+TGG 0.332528 1_1:+58086194 Msa0031360:CDS
ATTATTGATTATACTAGCTT+TGG 0.334337 1_1:+58084104 Msa0031360:CDS
CAATATTCTACCAATTAAAA+AGG 0.337258 1_1:-58094246 None:intergenic
ATGCGAGCTAATTTCAATTC+AGG 0.348914 1_1:-58089209 None:intergenic
GGAAAGGACATGACACTTCT+TGG 0.353144 1_1:+58090701 Msa0031360:CDS
AAGTTCATACCACCTTATAT+TGG 0.354647 1_1:-58090230 None:intergenic
CAAATACCTTTGGAATTAGT+TGG 0.360512 1_1:-58089106 None:intergenic
TGTTGCGAATGGAGATAATT+TGG 0.363552 1_1:+58084137 Msa0031360:CDS
AATGGTCTTCCTACTAGAAC+TGG 0.364096 1_1:+58084264 Msa0031360:CDS
AATATTTGCCATAGGGGAAT+TGG 0.388793 1_1:+58087067 Msa0031360:CDS
TATTCCATCAAGGGCTTCTT+CGG 0.390964 1_1:-58086940 None:intergenic
AATGCATACATACACCGATT+TGG 0.391207 1_1:-58085980 None:intergenic
GAAGGTTTATGATTATATAA+TGG 0.403319 1_1:+58094493 Msa0031360:three_prime_UTR
TGTAACCTTTGCAGTGTTGA+TGG 0.403656 1_1:+58090135 Msa0031360:intron
TAGGCTGGTGTCCGATGTAT+TGG 0.403880 1_1:+58090647 Msa0031360:intron
TGCCCCTATAGCATAACTTA+TGG 0.404144 1_1:+58086236 Msa0031360:CDS
AGGTTGTATTTCACTAAACT+TGG 0.408327 1_1:+58085858 Msa0031360:intron
TCAAAATGTAGTTTGACAAC+TGG 0.411155 1_1:-58090165 None:intergenic
GATCTTGAGAATATGGCTAT+TGG 0.412629 1_1:+58093715 Msa0031360:CDS
TATGATGTGAAATGTGAGTA+TGG 0.417643 1_1:-58083973 None:intergenic
TATTTCACTAAACTTGGGCT+TGG 0.419254 1_1:+58085864 Msa0031360:CDS
TTGAAGAATATTGAAGTTGA+TGG 0.419885 1_1:+58088978 Msa0031360:CDS
CGCTGTACAATCTGGTACAT+TGG 0.424783 1_1:+58086908 Msa0031360:CDS
TCTGAAGTATGAGATCCCTT+TGG 0.425665 1_1:-58086137 None:intergenic
GATTTCAATCTTGGTGGTAA+TGG 0.434766 1_1:+58084246 Msa0031360:CDS
TGTAAAAGAAAACACAAGAT+AGG 0.436075 1_1:+58083652 Msa0031360:five_prime_UTR
TCTTCCGAAGAAGCCCTTGA+TGG 0.436173 1_1:+58086936 Msa0031360:CDS
CTGAAGTATGAGATCCCTTT+GGG 0.444221 1_1:-58086136 None:intergenic
TGCATCCTTCACTTTAATGC+TGG 0.446229 1_1:-58094171 None:intergenic
ATCTCCATAAGTTATGCTAT+AGG 0.446865 1_1:-58086240 None:intergenic
TGTTATATATTAAATGATGA+AGG 0.449165 1_1:+58094475 Msa0031360:three_prime_UTR
ATAAGTTATGCTATAGGGGC+AGG 0.450756 1_1:-58086234 None:intergenic
CAACTACTGGATACTATGTC+AGG 0.454687 1_1:+58086270 Msa0031360:CDS
TAGATTCTTATAGATGCAAA+AGG 0.456456 1_1:+58094422 Msa0031360:three_prime_UTR
ATATATTTGATTCTGGAAAT+GGG 0.463580 1_1:+58089024 Msa0031360:CDS
TCCGTTGATTTCAATCTTGG+TGG 0.470108 1_1:+58084240 Msa0031360:CDS
ACTGCACACCTTATCATTCA+AGG 0.476752 1_1:-58094364 None:intergenic
TACTATGTCCAAGTTGATAC+AGG 0.477388 1_1:+58085903 Msa0031360:CDS
TCATAATTCCTTGAATGATA+AGG 0.478561 1_1:+58094356 Msa0031360:three_prime_UTR
TTGGTTGGAGAGAAATAAGA+AGG 0.482021 1_1:-58083623 None:intergenic
TCCGCCTTACAACCAGGAAT+CGG 0.485297 1_1:-58086206 None:intergenic
TCTGAATAATCGATTAATGA+TGG 0.486504 1_1:+58084068 Msa0031360:exon
TGGTTCCACCAATTCCCCTA+TGG 0.487442 1_1:-58087075 None:intergenic
ATTGATCAATTTAATTTCAA+CGG 0.492965 1_1:-58083850 None:intergenic
CAATTACTTCACGATAAAGC+TGG 0.497836 1_1:-58083747 None:intergenic
GCTGTACAATCTGGTACATT+GGG 0.498203 1_1:+58086909 Msa0031360:CDS
CACTGCCTTGACAATATTCG+TGG 0.504030 1_1:+58087038 Msa0031360:CDS
TGTCCTACGAAAAGCCAAAT+CGG 0.504507 1_1:+58085966 Msa0031360:CDS
CAAAACCAATTATTCCATCA+AGG 0.505616 1_1:-58086950 None:intergenic
GGTGTGCAGTGTGGTTGATA+TGG 0.506968 1_1:+58094377 Msa0031360:three_prime_UTR
AAAGTGAAGGATGCAACGAC+TGG 0.508416 1_1:+58094179 Msa0031360:CDS
AGATTCTTATAGATGCAAAA+GGG 0.509842 1_1:+58094423 Msa0031360:three_prime_UTR
TTTGATTCTGGAAATGGGAA+GGG 0.510094 1_1:+58089029 Msa0031360:CDS
GAGACTCACCCAGTTCTAGT+AGG 0.514151 1_1:-58084273 None:intergenic
ATTTGCCATAGGGGAATTGG+TGG 0.515298 1_1:+58087070 Msa0031360:CDS
TGGTCCGATTCCTGGTTGTA+AGG 0.515945 1_1:+58086202 Msa0031360:CDS
TAATTTCAATTCAGGCTGAC+GGG 0.516305 1_1:-58089201 None:intergenic
TATAGCATAACTTATGGAGA+TGG 0.523472 1_1:+58086242 Msa0031360:CDS
CGTCGGAAAACGAGTTTAAG+TGG 0.524546 1_1:+58084174 Msa0031360:CDS
GGTTGTATTTCACTAAACTT+GGG 0.524940 1_1:+58085859 Msa0031360:intron
GGAGATGGAAGTGCAACTAC+TGG 0.525159 1_1:+58086257 Msa0031360:CDS
AAAACCAATTATTCCATCAA+GGG 0.529475 1_1:-58086949 None:intergenic
TATGGAGATTTCCGTTGATC+CGG 0.531316 1_1:-58086310 None:intergenic
AGTTGGTCATAAACTATGAC+AGG 0.531572 1_1:-58089089 None:intergenic
TTGATTCTGGAAATGGGAAG+GGG 0.532454 1_1:+58089030 Msa0031360:CDS
AAGGGGACAGTGATTGATAG+TGG 0.533492 1_1:+58089047 Msa0031360:CDS
GGTGGTGGAATATTTGCCAT+AGG 0.534159 1_1:+58087059 Msa0031360:CDS
TGGGCTTGGCTCTCCAAAGA+AGG 0.534533 1_1:+58085878 Msa0031360:CDS
GTGGTGGAATATTTGCCATA+GGG 0.535995 1_1:+58087060 Msa0031360:CDS
GAAAAGTGTGACCCAAACTA+AGG 0.537843 1_1:+58090676 Msa0031360:CDS
CTCCATAAGTTATGCTATAG+GGG 0.541427 1_1:-58086238 None:intergenic
ATTTGATTCTGGAAATGGGA+AGG 0.541579 1_1:+58089028 Msa0031360:CDS
GATTGATAGTGGAACAACCT+TGG 0.548951 1_1:+58089058 Msa0031360:CDS
CTAATTTCAATTCAGGCTGA+CGG 0.548990 1_1:-58089202 None:intergenic
CAAGATAGGAAATGATAGAT+CGG 0.551096 1_1:+58083666 Msa0031360:five_prime_UTR
TGGTGTTTCAGGTGCAGCGT+CGG 0.553360 1_1:+58084157 Msa0031360:CDS
CTCTTCCAGCATTAAAGTGA+AGG 0.554484 1_1:+58094166 Msa0031360:CDS
AATGGCGTACTTTCCAGCAT+AGG 0.555725 1_1:-58089255 None:intergenic
ACAGCTTGCTGCATCTCGAA+AGG 0.556530 1_1:+58086998 Msa0031360:CDS
AGTGTGACCCAAACTAAGGA+TGG 0.559654 1_1:+58090680 Msa0031360:CDS
GGTGTTTCCGCCTTACAACC+AGG 0.561933 1_1:-58086212 None:intergenic
ATGGCGTACTTTCCAGCATA+GGG 0.567058 1_1:-58089254 None:intergenic
TATCACTTCCTGTATCAACT+TGG 0.567282 1_1:-58085911 None:intergenic
CGGAATTTGAGTCCACTGAG+TGG 0.568690 1_1:+58083686 Msa0031360:five_prime_UTR
TTGAGAATATGGCTATTGGA+TGG 0.573054 1_1:+58093719 Msa0031360:CDS
AACCTTTGCAGTGTTGATGG+TGG 0.574389 1_1:+58090138 Msa0031360:intron
CAGTAGAGTGAATGAATGAG+TGG 0.577972 1_1:-58083896 None:intergenic
AGGTGTGGCGCTGTACAATC+TGG 0.587242 1_1:+58086900 Msa0031360:intron
CTTGACAATATTCGTGGTGG+TGG 0.588390 1_1:+58087044 Msa0031360:CDS
CAAGCTTAACCGACTAAGAG+AGG 0.593128 1_1:-58083934 None:intergenic
TTGACTCTCTATGACCCAAA+GGG 0.594661 1_1:+58086122 Msa0031360:CDS
AGGAATCGGACCATCATATG+TGG 0.599832 1_1:-58086192 None:intergenic
CTGGTGTCCGATGTATTGGC+TGG 0.602129 1_1:+58090651 Msa0031360:CDS
AAGGACATGACACTTCTTGG+AGG 0.602130 1_1:+58090704 Msa0031360:CDS
GACCCAAACTAAGGATGGAA+AGG 0.607035 1_1:+58090685 Msa0031360:CDS
CCAGAATCAAATATATCCGA+GGG 0.608496 1_1:-58089017 None:intergenic
ATTGAAATTAGCTCGCATTG+AGG 0.611001 1_1:+58089214 Msa0031360:CDS
TCCAGAATCAAATATATCCG+AGG 0.613600 1_1:-58089018 None:intergenic
GGAATTTGAGTCCACTGAGT+GGG 0.616558 1_1:+58083687 Msa0031360:five_prime_UTR
AGTAGAGTGAATGAATGAGT+GGG 0.617908 1_1:-58083895 None:intergenic
AAAAGTCAGAACAACTCCAC+TGG 0.619798 1_1:+58087097 Msa0031360:CDS
TGATGTTCTACAGCTTCCCT+CGG 0.625997 1_1:+58089001 Msa0031360:CDS
TTATGACCAACTAATTCCAA+AGG 0.627083 1_1:+58089100 Msa0031360:CDS
GATTCTTATAGATGCAAAAG+GGG 0.635162 1_1:+58094424 Msa0031360:three_prime_UTR
CTTGACTCTCTATGACCCAA+AGG 0.636415 1_1:+58086121 Msa0031360:CDS
TAAGTTATGCTATAGGGGCA+GGG 0.637715 1_1:-58086233 None:intergenic
ACCACCAAGATTGAAATCAA+CGG 0.639049 1_1:-58084241 None:intergenic
CTATCTGTTCCAATATAAGG+TGG 0.639723 1_1:+58090221 Msa0031360:CDS
TCCGATTCCTGGTTGTAAGG+CGG 0.644021 1_1:+58086205 Msa0031360:CDS
TATGACAGGAAGATAAGCCA+AGG 0.645179 1_1:-58089075 None:intergenic
ACATACATATTTGGTACCAG+TGG 0.645303 1_1:-58087113 None:intergenic
CACCACCACGAATATTGTCA+AGG 0.649946 1_1:-58087043 None:intergenic
AACTACTGGATACTATGTCA+GGG 0.651961 1_1:+58086271 Msa0031360:CDS
TGGTGGAATATTTGCCATAG+GGG 0.652757 1_1:+58087061 Msa0031360:CDS
ATGGTCTTCCTACTAGAACT+GGG 0.663957 1_1:+58084265 Msa0031360:CDS
TACAGGAAGTGATATTCTGT+GGG 0.670376 1_1:+58085920 Msa0031360:CDS
ACTGGAATAGTACATACAGT+GGG 0.679660 1_1:+58094197 Msa0031360:CDS
ATACAGGAAGTGATATTCTG+TGG 0.684061 1_1:+58085919 Msa0031360:CDS
GACTGGAATAGTACATACAG+TGG 0.688634 1_1:+58094196 Msa0031360:CDS
TTGTAGGGCACATTACAATG+TGG 0.689913 1_1:+58088953 Msa0031360:intron
TATTGGAACAGATAGTCATG+AGG 0.699625 1_1:-58090213 None:intergenic
TGCCTTGACAATATTCGTGG+TGG 0.718049 1_1:+58087041 Msa0031360:CDS
GAATGATAAGGTGTGCAGTG+TGG 0.729307 1_1:+58094368 Msa0031360:three_prime_UTR
CATCACGATCATCTTCGTCG+TGG 0.733562 1_1:+58084204 Msa0031360:CDS
GATGTGAAATGTGAGTATGG+AGG 0.752371 1_1:-58083970 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTAGTTTATTTGATTT+AGG + chr1_1:58085838-58085857 Msa0031360:intron 10.0%
!! AAATACAAAAATTAAATAAG+GGG - chr1_1:58086072-58086091 None:intergenic 10.0%
!! GAAAATACAAAAATTAAATA+AGG - chr1_1:58086074-58086093 None:intergenic 10.0%
!! ATAAAATCCAATAAAAAAAA+TGG - chr1_1:58087542-58087561 None:intergenic 10.0%
!!! CATTTTATGAATTATTTAAA+TGG - chr1_1:58088475-58088494 None:intergenic 10.0%
!!! CTTTAAAATTTTATTTAACT+AGG + chr1_1:58089990-58090009 Msa0031360:intron 10.0%
!! GTAGATTAAAAAAATAAAAT+AGG - chr1_1:58090954-58090973 None:intergenic 10.0%
!!! TTTTTCTAATACTAAAAAAA+TGG - chr1_1:58093973-58093992 None:intergenic 10.0%
!!! ATTGATCAATTTAATTTCAA+CGG - chr1_1:58083853-58083872 None:intergenic 15.0%
!!! AATGTTTTTAAAAATATGCT+AGG + chr1_1:58084832-58084851 Msa0031360:intron 15.0%
!!! TACTTTTAATGTTATCATTA+CGG + chr1_1:58084869-58084888 Msa0031360:intron 15.0%
!!! AATAAGTTGAAAATAACTTA+TGG + chr1_1:58085563-58085582 Msa0031360:intron 15.0%
!! ATAAAACAGTTAATTCAAAA+AGG - chr1_1:58086538-58086557 None:intergenic 15.0%
!!! TTTTTGAATTAACTGTTTTA+TGG + chr1_1:58086537-58086556 Msa0031360:intron 15.0%
!!! TTTATGGTACTAAAATATTT+TGG + chr1_1:58086553-58086572 Msa0031360:intron 15.0%
!!! ATTTTATTTTTGTTCTTTGA+TGG + chr1_1:58087555-58087574 Msa0031360:intron 15.0%
!!! TTTTATTTTTGTTCTTTGAT+GGG + chr1_1:58087556-58087575 Msa0031360:intron 15.0%
!! CTTAAAGACAAATTTATAAA+TGG + chr1_1:58088513-58088532 Msa0031360:intron 15.0%
!!! AAATTTATAAATGGTTGATA+TGG + chr1_1:58088522-58088541 Msa0031360:intron 15.0%
!!! AATTTATAAATGGTTGATAT+GGG + chr1_1:58088523-58088542 Msa0031360:intron 15.0%
!! AATTCAATTAATATTTCTTC+TGG + chr1_1:58089144-58089163 Msa0031360:intron 15.0%
!! ATTAGCATAAAATAAAATAG+AGG + chr1_1:58089575-58089594 Msa0031360:intron 15.0%
!!! TCCTTTTCATTTTATTTTTT+GGG + chr1_1:58089799-58089818 Msa0031360:intron 15.0%
!!! TGATTATTTTTCGATTTATT+AGG + chr1_1:58090821-58090840 Msa0031360:intron 15.0%
!!! ATTATTTTCAATTTCAGATT+TGG + chr1_1:58093666-58093685 Msa0031360:intron 15.0%
!! TAGTATTAGAAAAATAAGAA+AGG + chr1_1:58093979-58093998 Msa0031360:intron 15.0%
!! GTTATAAAAATAGTTTAACA+TGG - chr1_1:58094294-58094313 None:intergenic 15.0%
!!! GTTAAACTATTTTTATAACT+AGG + chr1_1:58094295-58094314 Msa0031360:CDS 15.0%
!! TGTTATATATTAAATGATGA+AGG + chr1_1:58094475-58094494 Msa0031360:three_prime_UTR 15.0%
!!! TCTATGTTTGGAAAATTTTT+AGG - chr1_1:58083792-58083811 None:intergenic 20.0%
!!! AAGATTATCTTTTCTATGTT+TGG - chr1_1:58083804-58083823 None:intergenic 20.0%
!!! ATTATTGATTATACTAGCTT+TGG + chr1_1:58084104-58084123 Msa0031360:CDS 20.0%
!!! ACTTTTAATGTTATCATTAC+GGG + chr1_1:58084870-58084889 Msa0031360:intron 20.0%
!! TTAACTGTAGTATAATGTAA+TGG + chr1_1:58085207-58085226 Msa0031360:intron 20.0%
!! CAATGTACAATTACTTAATT+TGG + chr1_1:58085335-58085354 Msa0031360:intron 20.0%
!!! TGGATAAACAATTTATTTTG+CGG + chr1_1:58085421-58085440 Msa0031360:intron 20.0%
!! TCTAAAAAAGATCGAAAAAA+TGG + chr1_1:58085763-58085782 Msa0031360:intron 20.0%
!! ATACAATACAATGTAAATTG+TGG - chr1_1:58086391-58086410 None:intergenic 20.0%
!!! ATTGTTGTTGAATTGAATTA+GGG + chr1_1:58086453-58086472 Msa0031360:intron 20.0%
!! CTTTAATTCTTTATCAATCT+AGG - chr1_1:58086813-58086832 None:intergenic 20.0%
!! GAATTAAAGAATAAAATCAC+TGG + chr1_1:58086824-58086843 Msa0031360:intron 20.0%
!! GATTAATGAACATACATATT+TGG - chr1_1:58087125-58087144 None:intergenic 20.0%
!!! AGATTGTGGATTTTATTTTT+GGG + chr1_1:58087348-58087367 Msa0031360:intron 20.0%
!!! ATATATTTGATTCTGGAAAT+GGG + chr1_1:58089024-58089043 Msa0031360:CDS 20.0%
!! AAAAATGTTACAATGGTAAA+TGG - chr1_1:58089276-58089295 None:intergenic 20.0%
!! TCTATACAAAAATGTTACAA+TGG - chr1_1:58089283-58089302 None:intergenic 20.0%
!! TCATTATTCATTTATCCTAT+TGG + chr1_1:58089443-58089462 Msa0031360:intron 20.0%
!! CATTATTCATTTATCCTATT+GGG + chr1_1:58089444-58089463 Msa0031360:intron 20.0%
!!! GTCCTTTTCATTTTATTTTT+TGG + chr1_1:58089798-58089817 Msa0031360:intron 20.0%
!!! TTTTAAAGAACCATCTTAAA+TGG - chr1_1:58089978-58089997 None:intergenic 20.0%
!! TCATGTGATTGTAAATTAAA+TGG + chr1_1:58090448-58090467 Msa0031360:intron 20.0%
!! TAGAACTGAAAAATAAACTA+GGG - chr1_1:58091000-58091019 None:intergenic 20.0%
!! ATAGAACTGAAAAATAAACT+AGG - chr1_1:58091001-58091020 None:intergenic 20.0%
!! ATTTATCTATCTAACTTTGT+GGG + chr1_1:58091559-58091578 Msa0031360:intron 20.0%
!! TTGATAAAGAGTTTATAAAC+AGG - chr1_1:58092422-58092441 None:intergenic 20.0%
!! CAAATTATCAATTGCATAAA+AGG - chr1_1:58092574-58092593 None:intergenic 20.0%
!!! ATAAAAAATGTTGTTTTGCA+TGG - chr1_1:58092733-58092752 None:intergenic 20.0%
!!! AGAATGTTTATTTTTGTGAA+CGG + chr1_1:58093076-58093095 Msa0031360:intron 20.0%
!! TTTATCATATGTTATTCTTG+TGG - chr1_1:58093249-58093268 None:intergenic 20.0%
!! TAGACCAACATATTATTAAT+AGG - chr1_1:58093341-58093360 None:intergenic 20.0%
!! ATTCTTAAATTAACACCAAA+TGG - chr1_1:58093512-58093531 None:intergenic 20.0%
!!! TTAACGTCTATTGTTTTTTA+GGG + chr1_1:58094077-58094096 Msa0031360:intron 20.0%
!! CAATATTCTACCAATTAAAA+AGG - chr1_1:58094249-58094268 None:intergenic 20.0%
!!! GGCGATTTTTTAAATTTTTT+TGG + chr1_1:58094445-58094464 Msa0031360:three_prime_UTR 20.0%
!! GTTTTCTTTTACACTATGTT+TGG - chr1_1:58083645-58083664 None:intergenic 25.0%
! TGTAAAAGAAAACACAAGAT+AGG + chr1_1:58083652-58083671 Msa0031360:five_prime_UTR 25.0%
! TCTGAATAATCGATTAATGA+TGG + chr1_1:58084068-58084087 Msa0031360:exon 25.0%
! TCATATTCATTAAATTGACG+TGG - chr1_1:58084363-58084382 None:intergenic 25.0%
!! TGATTCAGTGTTATTAATAG+TGG + chr1_1:58084429-58084448 Msa0031360:intron 25.0%
!!! TCAGTTTTAATTCATGTTTC+TGG - chr1_1:58084611-58084630 None:intergenic 25.0%
!!! TTTTTGCATATTGGTGATAT+CGG - chr1_1:58084938-58084957 None:intergenic 25.0%
! ATGATGCTCTATAGTTTAAT+TGG + chr1_1:58085118-58085137 Msa0031360:intron 25.0%
! TATAGTTTAATTGGTATGCA+CGG + chr1_1:58085127-58085146 Msa0031360:intron 25.0%
! ATTATTGAAGCAATACAATG+TGG + chr1_1:58085364-58085383 Msa0031360:intron 25.0%
! AAACATGCTCTAACTATAAA+TGG + chr1_1:58085676-58085695 Msa0031360:intron 25.0%
! AACATGCTCTAACTATAAAT+GGG + chr1_1:58085677-58085696 Msa0031360:intron 25.0%
!!! TTTCGATCTTTTTTAGATCT+TGG - chr1_1:58085760-58085779 None:intergenic 25.0%
!!! AAAATAGCAGCATCATTTTT+GGG + chr1_1:58086342-58086361 Msa0031360:CDS 25.0%
!! ATTGTATGTTGTTGAGTTTT+CGG + chr1_1:58086404-58086423 Msa0031360:intron 25.0%
!! CATTGTTGTTGAATTGAATT+AGG + chr1_1:58086452-58086471 Msa0031360:intron 25.0%
!! TTGTTGTTGAATTGAATTAG+GGG + chr1_1:58086454-58086473 Msa0031360:intron 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG - chr1_1:58086686-58086705 None:intergenic 25.0%
! AATGCAAAATTGCTCTATTT+AGG + chr1_1:58086685-58086704 Msa0031360:intron 25.0%
! CACTTGAATGGAAAATATTT+GGG - chr1_1:58086749-58086768 None:intergenic 25.0%
! AAAACCAATTATTCCATCAA+GGG - chr1_1:58086952-58086971 None:intergenic 25.0%
!! AGTTGATATGCAATTAAAGT+AGG + chr1_1:58087285-58087304 Msa0031360:intron 25.0%
! GTTGATATGCAATTAAAGTA+GGG + chr1_1:58087286-58087305 Msa0031360:intron 25.0%
!!! AAAGAAAATTTTCGAGATTG+TGG + chr1_1:58087334-58087353 Msa0031360:intron 25.0%
!!! GAGATTGTGGATTTTATTTT+TGG + chr1_1:58087347-58087366 Msa0031360:intron 25.0%
!!! TATGTTGTTTTTTACACAAG+AGG - chr1_1:58087443-58087462 None:intergenic 25.0%
! CTTGTGTAAAAAACAACATA+AGG + chr1_1:58087443-58087462 Msa0031360:intron 25.0%
!! TTTGCATTTTTCTATCCATT+TGG + chr1_1:58087748-58087767 Msa0031360:intron 25.0%
! CACTAAAACATTTATCCAAA+TGG - chr1_1:58087766-58087785 None:intergenic 25.0%
!!! CATTTGGATAAATGTTTTAG+TGG + chr1_1:58087764-58087783 Msa0031360:intron 25.0%
! AATACAGTAACTGATGTTAA+GGG + chr1_1:58087993-58088012 Msa0031360:intron 25.0%
!!! GAAGGCAAATTTTTGTTTAT+GGG + chr1_1:58088201-58088220 Msa0031360:intron 25.0%
! TATATATTGAGGTAGATGTT+AGG - chr1_1:58088395-58088414 None:intergenic 25.0%
! TTGAAGAATATTGAAGTTGA+TGG + chr1_1:58088978-58088997 Msa0031360:CDS 25.0%
!! GATATATTTGATTCTGGAAA+TGG + chr1_1:58089023-58089042 Msa0031360:CDS 25.0%
! TTTCTAGATACAAATACCTT+TGG - chr1_1:58089119-58089138 None:intergenic 25.0%
! AACAGCAAAATATGACATTT+GGG - chr1_1:58089507-58089526 None:intergenic 25.0%
! AAACAGCAAAATATGACATT+TGG - chr1_1:58089508-58089527 None:intergenic 25.0%
!! AGTTTTTATAGCACATAATG+TGG - chr1_1:58089741-58089760 None:intergenic 25.0%
! GCCCAAAAAATAAAATGAAA+AGG - chr1_1:58089803-58089822 None:intergenic 25.0%
! GTCTCTACACATATAATATA+TGG - chr1_1:58090427-58090446 None:intergenic 25.0%
! TATCAGTAAAATTCTCCATA+TGG - chr1_1:58090525-58090544 None:intergenic 25.0%
! AGCAACAAGTTTAACAAAAT+GGG - chr1_1:58090578-58090597 None:intergenic 25.0%
! TAGCAACAAGTTTAACAAAA+TGG - chr1_1:58090579-58090598 None:intergenic 25.0%
! TGCAAACTTATAAGCAAATA+AGG - chr1_1:58090860-58090879 None:intergenic 25.0%
! TCATTCTAAACTATTCAACT+TGG + chr1_1:58090906-58090925 Msa0031360:intron 25.0%
!!! TTTTTTGGTTTGTTGTATGA+TGG + chr1_1:58091483-58091502 Msa0031360:intron 25.0%
! GATTTATCTATCTAACTTTG+TGG + chr1_1:58091558-58091577 Msa0031360:intron 25.0%
! CTGGTTCAAATCAAATTAAA+AGG - chr1_1:58091776-58091795 None:intergenic 25.0%
! TTACGAATGTAAGTTATTTG+AGG + chr1_1:58091854-58091873 Msa0031360:intron 25.0%
! AACATCATATACTTGTTTGA+AGG - chr1_1:58091918-58091937 None:intergenic 25.0%
! TTTGTTCTCTAATGAAAGAT+TGG + chr1_1:58091995-58092014 Msa0031360:intron 25.0%
! ATTCCTATTATGATTCCTAT+CGG + chr1_1:58092306-58092325 Msa0031360:intron 25.0%
! ATAAAGAGTTTATAAACAGG+AGG - chr1_1:58092419-58092438 None:intergenic 25.0%
! ACAAATGACATATTCACAAT+TGG + chr1_1:58092786-58092805 Msa0031360:intron 25.0%
!! AGCATAAACAAAAGCATAAT+AGG + chr1_1:58092998-58093017 Msa0031360:intron 25.0%
!! ATAAACAAAAGCATAATAGG+TGG + chr1_1:58093001-58093020 Msa0031360:intron 25.0%
!! TAAACAAAAGCATAATAGGT+GGG + chr1_1:58093002-58093021 Msa0031360:intron 25.0%
! CCTTCATTCCATTTATAATT+TGG - chr1_1:58093048-58093067 None:intergenic 25.0%
! CCAAATTATAAATGGAATGA+AGG + chr1_1:58093045-58093064 Msa0031360:intron 25.0%
! TATAAATGGAATGAAGGTTA+AGG + chr1_1:58093051-58093070 Msa0031360:intron 25.0%
! ATAAATGGAATGAAGGTTAA+GGG + chr1_1:58093052-58093071 Msa0031360:intron 25.0%
! GCATCCTATTAATAATATGT+TGG + chr1_1:58093334-58093353 Msa0031360:intron 25.0%
!! TCTGATGCTAAAATTCATTT+TGG + chr1_1:58093410-58093429 Msa0031360:intron 25.0%
! CAGAATTATGAAATGCTAAT+TGG - chr1_1:58093765-58093784 None:intergenic 25.0%
!! TTTTTACCATACAACAAAGT+AGG - chr1_1:58093791-58093810 None:intergenic 25.0%
! TGCATATTAATGTATAACTG+TGG - chr1_1:58093817-58093836 None:intergenic 25.0%
! TAATATGCAAAATTAGTCCA+AGG + chr1_1:58093828-58093847 Msa0031360:intron 25.0%
! AAAATATTTCAAACTGGAGT+AGG - chr1_1:58093924-58093943 None:intergenic 25.0%
! AGCTGAAAAATATTTCAAAC+TGG - chr1_1:58093930-58093949 None:intergenic 25.0%
!!! GTTAACGTCTATTGTTTTTT+AGG + chr1_1:58094076-58094095 Msa0031360:intron 25.0%
! TCATAATTCCTTGAATGATA+AGG + chr1_1:58094356-58094375 Msa0031360:three_prime_UTR 25.0%
! TAGATTCTTATAGATGCAAA+AGG + chr1_1:58094422-58094441 Msa0031360:three_prime_UTR 25.0%
! AGATTCTTATAGATGCAAAA+GGG + chr1_1:58094423-58094442 Msa0031360:three_prime_UTR 25.0%
! TCTTTTACACTATGTTTGGT+TGG - chr1_1:58083641-58083660 None:intergenic 30.0%
CAAGATAGGAAATGATAGAT+CGG + chr1_1:58083666-58083685 Msa0031360:five_prime_UTR 30.0%
!!! TGTTTTTTTCCTCTCTTAGT+CGG + chr1_1:58083925-58083944 Msa0031360:five_prime_UTR 30.0%
TATGATGTGAAATGTGAGTA+TGG - chr1_1:58083976-58083995 None:intergenic 30.0%
! AACTCTCTATAACAGCTTTT+TGG - chr1_1:58084410-58084429 None:intergenic 30.0%
TGTATGTTTGGTATCACAAT+GGG - chr1_1:58084685-58084704 None:intergenic 30.0%
ATTGTGATACCAAACATACA+CGG + chr1_1:58084685-58084704 Msa0031360:intron 30.0%
CACTATTACACATCAGTATT+TGG - chr1_1:58085021-58085040 None:intergenic 30.0%
CAAATACTGATGTGTAATAG+TGG + chr1_1:58085019-58085038 Msa0031360:intron 30.0%
GATGTGTAATAGTGGTATAA+CGG + chr1_1:58085027-58085046 Msa0031360:intron 30.0%
! ACTCAGTGTTGTTAAATAAC+TGG - chr1_1:58085060-58085079 None:intergenic 30.0%
ATCCTAAAATATCTTCACAG+CGG - chr1_1:58085182-58085201 None:intergenic 30.0%
TGTGGAACTTGATAAAATCT+TGG + chr1_1:58085382-58085401 Msa0031360:intron 30.0%
GTGGAACTTGATAAAATCTT+GGG + chr1_1:58085383-58085402 Msa0031360:intron 30.0%
TGGAACTTGATAAAATCTTG+GGG + chr1_1:58085384-58085403 Msa0031360:intron 30.0%
GCTTATTTGAGCTTATCTAT+TGG - chr1_1:58085650-58085669 None:intergenic 30.0%
TAGTTAGAGCATGTTTAGAT+TGG - chr1_1:58085672-58085691 None:intergenic 30.0%
ACATGCTCTAACTATAAATG+GGG + chr1_1:58085678-58085697 Msa0031360:intron 30.0%
TATTAGGAGACAGACAAATA+GGG - chr1_1:58085728-58085747 None:intergenic 30.0%
TTATTAGGAGACAGACAAAT+AGG - chr1_1:58085729-58085748 None:intergenic 30.0%
AGGTTGTATTTCACTAAACT+TGG + chr1_1:58085858-58085877 Msa0031360:intron 30.0%
GGTTGTATTTCACTAAACTT+GGG + chr1_1:58085859-58085878 Msa0031360:intron 30.0%
TCTCCATAAGTTATGCTATA+GGG - chr1_1:58086242-58086261 None:intergenic 30.0%
ATCTCCATAAGTTATGCTAT+AGG - chr1_1:58086243-58086262 None:intergenic 30.0%
TATAGCATAACTTATGGAGA+TGG + chr1_1:58086242-58086261 Msa0031360:CDS 30.0%
!!! AAAATGATGCTGCTATTTTG+CGG - chr1_1:58086341-58086360 None:intergenic 30.0%
! CAAAATAGCAGCATCATTTT+TGG + chr1_1:58086341-58086360 Msa0031360:CDS 30.0%
! TTGTATGTTGTTGAGTTTTC+GGG + chr1_1:58086405-58086424 Msa0031360:intron 30.0%
TGTTGTTGAATTGAATTAGG+GGG + chr1_1:58086455-58086474 Msa0031360:intron 30.0%
!!! TTGTTCTTTTTTCTCATGAG+TGG + chr1_1:58086480-58086499 Msa0031360:intron 30.0%
!!! TGTTCTTTTTTCTCATGAGT+GGG + chr1_1:58086481-58086500 Msa0031360:intron 30.0%
CAGTTAATTCAAAAAGGCAA+CGG - chr1_1:58086532-58086551 None:intergenic 30.0%
CCACTTGAATGGAAAATATT+TGG - chr1_1:58086750-58086769 None:intergenic 30.0%
! CCAAATATTTTCCATTCAAG+TGG + chr1_1:58086747-58086766 Msa0031360:intron 30.0%
CAAAACCAATTATTCCATCA+AGG - chr1_1:58086953-58086972 None:intergenic 30.0%
!! CTTGATGGAATAATTGGTTT+TGG + chr1_1:58086951-58086970 Msa0031360:CDS 30.0%
TTACATGACAACCAATATCA+AGG - chr1_1:58087166-58087185 None:intergenic 30.0%
!!! ATTTTATTTTTGGGAAGCCT+TGG + chr1_1:58087357-58087376 Msa0031360:intron 30.0%
TTAATAGTGGTCATGAATCT+CGG - chr1_1:58087696-58087715 None:intergenic 30.0%
TATTAAAACCAACCACTGTA+GGG + chr1_1:58087710-58087729 Msa0031360:intron 30.0%
ACCCTTAAAATCAATGTAGT+GGG - chr1_1:58087803-58087822 None:intergenic 30.0%
AACCCTTAAAATCAATGTAG+TGG - chr1_1:58087804-58087823 None:intergenic 30.0%
!! TTTCTGAAATATACCATCCA+TGG - chr1_1:58087862-58087881 None:intergenic 30.0%
TGGATGGTATATTTCAGAAA+AGG + chr1_1:58087862-58087881 Msa0031360:intron 30.0%
GGATGGTATATTTCAGAAAA+GGG + chr1_1:58087863-58087882 Msa0031360:intron 30.0%
TATTTCAGAAAAGGGAAAAG+AGG + chr1_1:58087871-58087890 Msa0031360:intron 30.0%
ATTTCAGAAAAGGGAAAAGA+GGG + chr1_1:58087872-58087891 Msa0031360:intron 30.0%
ACCTTTCATTTATTACTCCT+AGG - chr1_1:58087955-58087974 None:intergenic 30.0%
CAATACAGTAACTGATGTTA+AGG + chr1_1:58087992-58088011 Msa0031360:intron 30.0%
AGCTTAACTGCTACAATAAT+AGG - chr1_1:58088019-58088038 None:intergenic 30.0%
GAGGTATATTCCAAAAATGA+GGG + chr1_1:58088056-58088075 Msa0031360:intron 30.0%
ATGTTAAGTGGAAATTTGAG+AGG + chr1_1:58088117-58088136 Msa0031360:intron 30.0%
TCCTTTCATCTATTACTACT+GGG - chr1_1:58088145-58088164 None:intergenic 30.0%
!! GGAAGGCAAATTTTTGTTTA+TGG + chr1_1:58088200-58088219 Msa0031360:intron 30.0%
CTGTGAACATATGAGTATAT+TGG - chr1_1:58088301-58088320 None:intergenic 30.0%
! TTTTCTGTAGTTCACTAGAA+GGG + chr1_1:58088784-58088803 Msa0031360:intron 30.0%
CAGATATGGATATATCCTAT+GGG - chr1_1:58088819-58088838 None:intergenic 30.0%
TCAGATATGGATATATCCTA+TGG - chr1_1:58088820-58088839 None:intergenic 30.0%
TCCATGAATATTCTTTCAGT+TGG + chr1_1:58088857-58088876 Msa0031360:intron 30.0%
ACCAACTGAAAGAATATTCA+TGG - chr1_1:58088861-58088880 None:intergenic 30.0%
!! TTGATATTCAGTTTAGCTCT+TGG + chr1_1:58088891-58088910 Msa0031360:intron 30.0%
!! TGATATTCAGTTTAGCTCTT+GGG + chr1_1:58088892-58088911 Msa0031360:intron 30.0%
TTATGACCAACTAATTCCAA+AGG + chr1_1:58089100-58089119 Msa0031360:CDS 30.0%
!! CAAATACCTTTGGAATTAGT+TGG - chr1_1:58089109-58089128 None:intergenic 30.0%
!! TATTTCTTCTGGAGTACTTA+TGG + chr1_1:58089155-58089174 Msa0031360:intron 30.0%
! TTTAAATGTTTTCCCTATGC+TGG + chr1_1:58089242-58089261 Msa0031360:CDS 30.0%
!! TCCATTTCCTTAGTTTGTTA+AGG + chr1_1:58089830-58089849 Msa0031360:intron 30.0%
!! CCATTTCCTTAGTTTGTTAA+GGG + chr1_1:58089831-58089850 Msa0031360:intron 30.0%
ATTACTCCCTTAACAAACTA+AGG - chr1_1:58089840-58089859 None:intergenic 30.0%
TACAAAAGAGCCATTTAAGA+TGG + chr1_1:58089965-58089984 Msa0031360:intron 30.0%
TCAAAATGTAGTTTGACAAC+TGG - chr1_1:58090168-58090187 None:intergenic 30.0%
! AGTTGTCAAACTACATTTTG+AGG + chr1_1:58090167-58090186 Msa0031360:CDS 30.0%
! GTTGTCAAACTACATTTTGA+GGG + chr1_1:58090168-58090187 Msa0031360:CDS 30.0%
TGACTATCTGTTCCAATATA+AGG + chr1_1:58090218-58090237 Msa0031360:CDS 30.0%
AAGTTCATACCACCTTATAT+TGG - chr1_1:58090233-58090252 None:intergenic 30.0%
ATATAACACACAAAACACCT+GGG - chr1_1:58090385-58090404 None:intergenic 30.0%
TTGAAGTCAAGAGTTAACAA+AGG - chr1_1:58090487-58090506 None:intergenic 30.0%
TGATGATCTAAATTGCCATA+TGG + chr1_1:58090507-58090526 Msa0031360:intron 30.0%
! TTTCCTTAATTTTGTCCTCT+AGG + chr1_1:58090628-58090647 Msa0031360:intron 30.0%
ATTCCTCATATTGAACCAAA+TGG + chr1_1:58090779-58090798 Msa0031360:intron 30.0%
! ATTCCATTTGGTTCAATATG+AGG - chr1_1:58090785-58090804 None:intergenic 30.0%
CACAAATAACACAGTTATCA+AGG - chr1_1:58091420-58091439 None:intergenic 30.0%
!!! TTGTGCTTGCTTTGTTTTTT+TGG + chr1_1:58091468-58091487 Msa0031360:intron 30.0%
!! ATGTTGTGATGTATTTTAGG+AGG - chr1_1:58091654-58091673 None:intergenic 30.0%
! GTGATGTTGTGATGTATTTT+AGG - chr1_1:58091657-58091676 None:intergenic 30.0%
! AATTATGTGTTGCTAGTACT+TGG + chr1_1:58091746-58091765 Msa0031360:intron 30.0%
! ATTCGTAACAAGCTTTTTGA+GGG - chr1_1:58091842-58091861 None:intergenic 30.0%
!!! ATGTTTTGATGATTCCAAAG+AGG + chr1_1:58091933-58091952 Msa0031360:intron 30.0%
CAAAACATATAGAAGTTGAC+TGG - chr1_1:58091979-58091998 None:intergenic 30.0%
!! TTATCACATTCTAGTTCCAT+AGG + chr1_1:58092046-58092065 Msa0031360:intron 30.0%
GTAAGCAAGTTGTTAATACA+CGG - chr1_1:58092171-58092190 None:intergenic 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_1:58092220-58092239 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_1:58092221-58092240 None:intergenic 30.0%
AGGAATCATATTGACATTGT+TGG - chr1_1:58092292-58092311 None:intergenic 30.0%
GTGATCCTTTGTAGAAATTT+GGG + chr1_1:58092350-58092369 Msa0031360:intron 30.0%
TGATCCTTTGTAGAAATTTG+GGG + chr1_1:58092351-58092370 Msa0031360:intron 30.0%
TCAATTGCATAAAAGGATGT+TGG - chr1_1:58092567-58092586 None:intergenic 30.0%
! CATATTCACAATTGGTGATA+AGG + chr1_1:58092794-58092813 Msa0031360:intron 30.0%
TTGAATGTTTAGATAGACAC+TGG - chr1_1:58092896-58092915 None:intergenic 30.0%
CTCGATTCATAAAATAGTTC+AGG - chr1_1:58092967-58092986 None:intergenic 30.0%
GCATGGTACCAAATTATAAA+TGG + chr1_1:58093037-58093056 Msa0031360:intron 30.0%
AAAAAAAAACGCTTGTGAGA+CGG - chr1_1:58093441-58093460 None:intergenic 30.0%
AAGCCTATAAGAGAAAGTTA+AGG - chr1_1:58093477-58093496 None:intergenic 30.0%
!! CTTTAAAATGTTGAGCCATT+TGG + chr1_1:58093494-58093513 Msa0031360:intron 30.0%
AAAATCCTTCTCACAAGTAT+TGG + chr1_1:58093616-58093635 Msa0031360:intron 30.0%
AATGAAGAGGAGATAATCTT+AGG - chr1_1:58093872-58093891 None:intergenic 30.0%
!! TAAGATTCATGTGGATTAGA+TGG - chr1_1:58094054-58094073 None:intergenic 30.0%
TCTAATCCACATGAATCTTA+TGG + chr1_1:58094054-58094073 Msa0031360:intron 30.0%
! CACTGTGTTATTGTTTCTTT+AGG + chr1_1:58094143-58094162 Msa0031360:intron 30.0%
! TCAGCTTCTACCTTTTTAAT+TGG + chr1_1:58094236-58094255 Msa0031360:CDS 30.0%
GATTCTTATAGATGCAAAAG+GGG + chr1_1:58094424-58094443 Msa0031360:three_prime_UTR 30.0%
TTGGTTGGAGAGAAATAAGA+AGG - chr1_1:58083626-58083645 None:intergenic 35.0%
CAATTACTTCACGATAAAGC+TGG - chr1_1:58083750-58083769 None:intergenic 35.0%
AGTAGAGTGAATGAATGAGT+GGG - chr1_1:58083898-58083917 None:intergenic 35.0%
! GAAATTTTGTGTGTTGCGAA+TGG + chr1_1:58084126-58084145 Msa0031360:CDS 35.0%
TGTTGCGAATGGAGATAATT+TGG + chr1_1:58084137-58084156 Msa0031360:CDS 35.0%
!! TGGAGATAATTTGGTGTTTC+AGG + chr1_1:58084146-58084165 Msa0031360:CDS 35.0%
!! TCATCCGTTGATTTCAATCT+TGG + chr1_1:58084237-58084256 Msa0031360:CDS 35.0%
ACCACCAAGATTGAAATCAA+CGG - chr1_1:58084244-58084263 None:intergenic 35.0%
! GATTTCAATCTTGGTGGTAA+TGG + chr1_1:58084246-58084265 Msa0031360:CDS 35.0%
! TGATCTACTCATCGGATTTT+TGG - chr1_1:58084459-58084478 None:intergenic 35.0%
GTGTATGTTTGGTATCACAA+TGG - chr1_1:58084686-58084705 None:intergenic 35.0%
!! TGCTGATTCAGTAATGAGAT+GGG - chr1_1:58084799-58084818 None:intergenic 35.0%
!! ATGCTGATTCAGTAATGAGA+TGG - chr1_1:58084800-58084819 None:intergenic 35.0%
AATCCATACCACTGAAATAG+CGG - chr1_1:58084965-58084984 None:intergenic 35.0%
ATGGATTCACAACAGCATAT+TGG + chr1_1:58084978-58084997 Msa0031360:intron 35.0%
TCCTAAAATATCTTCACAGC+GGG - chr1_1:58085181-58085200 None:intergenic 35.0%
ATGGACATGTCATAACTCAT+AGG + chr1_1:58085582-58085601 Msa0031360:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_1:58085625-58085644 None:intergenic 35.0%
! ATCTTGGTGTGAGGTTTATT+AGG - chr1_1:58085744-58085763 None:intergenic 35.0%
!!! CTTTTTTAGATCTTGGTGTG+AGG - chr1_1:58085753-58085772 None:intergenic 35.0%
TATTTCACTAAACTTGGGCT+TGG + chr1_1:58085864-58085883 Msa0031360:CDS 35.0%
!! TACTATGTCCAAGTTGATAC+AGG + chr1_1:58085903-58085922 Msa0031360:CDS 35.0%
TATCACTTCCTGTATCAACT+TGG - chr1_1:58085914-58085933 None:intergenic 35.0%
ATACAGGAAGTGATATTCTG+TGG + chr1_1:58085919-58085938 Msa0031360:CDS 35.0%
TACAGGAAGTGATATTCTGT+GGG + chr1_1:58085920-58085939 Msa0031360:CDS 35.0%
! AATGCATACATACACCGATT+TGG - chr1_1:58085983-58086002 None:intergenic 35.0%
! GTTGTTGTTGTTACAACAGA+TGG + chr1_1:58086097-58086116 Msa0031360:intron 35.0%
! TTTTGCTCTTCCACATATGA+TGG + chr1_1:58086182-58086201 Msa0031360:CDS 35.0%
CTCCATAAGTTATGCTATAG+GGG - chr1_1:58086241-58086260 None:intergenic 35.0%
AACTACTGGATACTATGTCA+GGG + chr1_1:58086271-58086290 Msa0031360:CDS 35.0%
TATCTTAACATGTGCCTTGA+GGG - chr1_1:58086595-58086614 None:intergenic 35.0%
!!! TGGAATAATTGGTTTTGGAC+AGG + chr1_1:58086956-58086975 Msa0031360:CDS 35.0%
AATATTTGCCATAGGGGAAT+TGG + chr1_1:58087067-58087086 Msa0031360:CDS 35.0%
ACATACATATTTGGTACCAG+TGG - chr1_1:58087116-58087135 None:intergenic 35.0%
TTGATCTCATGCCTTGATAT+TGG + chr1_1:58087152-58087171 Msa0031360:intron 35.0%
TTGGTTGTCATGTAAATCCA+AGG + chr1_1:58087171-58087190 Msa0031360:intron 35.0%
TGGTTGTCATGTAAATCCAA+GGG + chr1_1:58087172-58087191 Msa0031360:intron 35.0%
GATCAATTGATCGTGAAATG+AGG - chr1_1:58087252-58087271 None:intergenic 35.0%
CATACAATACACCAATTGGT+GGG + chr1_1:58087469-58087488 Msa0031360:intron 35.0%
CAATAAAAAAAATGGCAGCC+CGG - chr1_1:58087534-58087553 None:intergenic 35.0%
AGCTTTACCTGCAATGTTAA+GGG - chr1_1:58087671-58087690 None:intergenic 35.0%
AAGCTTTACCTGCAATGTTA+AGG - chr1_1:58087672-58087691 None:intergenic 35.0%
!!! ACAGTGGTTGGTTTTAATAG+TGG - chr1_1:58087709-58087728 None:intergenic 35.0%
CTATTAAAACCAACCACTGT+AGG + chr1_1:58087709-58087728 Msa0031360:intron 35.0%
!!! AGCCCACTACATTGATTTTA+AGG + chr1_1:58087798-58087817 Msa0031360:intron 35.0%
!!! GCCCACTACATTGATTTTAA+GGG + chr1_1:58087799-58087818 Msa0031360:intron 35.0%
AAATATACCATCCATGGCTT+GGG - chr1_1:58087856-58087875 None:intergenic 35.0%
ACACGTGAAAGAGATTTAGT+GGG + chr1_1:58087895-58087914 Msa0031360:intron 35.0%
GGAGAGATGTTTATACTAAC+TGG + chr1_1:58087916-58087935 Msa0031360:intron 35.0%
ATACTAACTGGAAATCGAGT+AGG + chr1_1:58087928-58087947 Msa0031360:intron 35.0%
TACTAACTGGAAATCGAGTA+GGG + chr1_1:58087929-58087948 Msa0031360:intron 35.0%
GCCTAGGAGTAATAAATGAA+AGG + chr1_1:58087951-58087970 Msa0031360:intron 35.0%
TTATTGTAGCAGTTAAGCTG+TGG + chr1_1:58088020-58088039 Msa0031360:intron 35.0%
! GGAGGTATATTCCAAAAATG+AGG + chr1_1:58088055-58088074 Msa0031360:intron 35.0%
ATTCCAAAAATGAGGGAAAG+AGG + chr1_1:58088063-58088082 Msa0031360:intron 35.0%
! ATTCCTCTTTCCCTCATTTT+TGG - chr1_1:58088069-58088088 None:intergenic 35.0%
AATACATGGAGTAGACTTAG+TGG + chr1_1:58088086-58088105 Msa0031360:intron 35.0%
ATACATGGAGTAGACTTAGT+GGG + chr1_1:58088087-58088106 Msa0031360:intron 35.0%
TCCCAGTAGTAATAGATGAA+AGG + chr1_1:58088141-58088160 Msa0031360:intron 35.0%
CTCCTTTCATCTATTACTAC+TGG - chr1_1:58088146-58088165 None:intergenic 35.0%
CAGTAGTAATAGATGAAAGG+AGG + chr1_1:58088144-58088163 Msa0031360:intron 35.0%
TAGTAATAGATGAAAGGAGG+TGG + chr1_1:58088147-58088166 Msa0031360:intron 35.0%
CTTTGGCGTTTCTATTATTG+TGG + chr1_1:58088353-58088372 Msa0031360:intron 35.0%
AGTGAACTACAGAAAACCAA+CGG - chr1_1:58088780-58088799 None:intergenic 35.0%
! GTTTTCTGTAGTTCACTAGA+AGG + chr1_1:58088783-58088802 Msa0031360:intron 35.0%
TTTCAAAGCAGTCTCAGATA+TGG - chr1_1:58088833-58088852 None:intergenic 35.0%
! AGTCTGTTGTTGACTATTGT+AGG + chr1_1:58088937-58088956 Msa0031360:intron 35.0%
! GTCTGTTGTTGACTATTGTA+GGG + chr1_1:58088938-58088957 Msa0031360:intron 35.0%
CCAGAATCAAATATATCCGA+GGG - chr1_1:58089020-58089039 None:intergenic 35.0%
TCCAGAATCAAATATATCCG+AGG - chr1_1:58089021-58089040 None:intergenic 35.0%
! ATTTGATTCTGGAAATGGGA+AGG + chr1_1:58089028-58089047 Msa0031360:CDS 35.0%
! TTTGATTCTGGAAATGGGAA+GGG + chr1_1:58089029-58089048 Msa0031360:CDS 35.0%
AGTTGGTCATAAACTATGAC+AGG - chr1_1:58089092-58089111 None:intergenic 35.0%
TAATTTCAATTCAGGCTGAC+GGG - chr1_1:58089204-58089223 None:intergenic 35.0%
CTAATTTCAATTCAGGCTGA+CGG - chr1_1:58089205-58089224 None:intergenic 35.0%
ATGCGAGCTAATTTCAATTC+AGG - chr1_1:58089212-58089231 None:intergenic 35.0%
ATTGAAATTAGCTCGCATTG+AGG + chr1_1:58089214-58089233 Msa0031360:CDS 35.0%
! TTAACTTTTGCACTTGAGCA+AGG + chr1_1:58089654-58089673 Msa0031360:intron 35.0%
!! AGAGTGCTAATTCCTTTTCT+CGG + chr1_1:58089776-58089795 Msa0031360:intron 35.0%
AAATGAAAAGGACCGAGAAA+AGG - chr1_1:58089791-58089810 None:intergenic 35.0%
CCCTTAACAAACTAAGGAAA+TGG - chr1_1:58089834-58089853 None:intergenic 35.0%
TTGTTAAGGGAGTAATTGAG+TGG + chr1_1:58089844-58089863 Msa0031360:intron 35.0%
TGTTAAGGGAGTAATTGAGT+GGG + chr1_1:58089845-58089864 Msa0031360:intron 35.0%
! TAGACTTTTTGTTGCTAGAC+AGG + chr1_1:58089927-58089946 Msa0031360:intron 35.0%
TATTGGAACAGATAGTCATG+AGG - chr1_1:58090216-58090235 None:intergenic 35.0%
CTATCTGTTCCAATATAAGG+TGG + chr1_1:58090221-58090240 Msa0031360:CDS 35.0%
GATATAACACACAAAACACC+TGG - chr1_1:58090386-58090405 None:intergenic 35.0%
TAGCTATTGAGCATTCCATT+TGG - chr1_1:58090797-58090816 None:intergenic 35.0%
GAAGTTGTCCCAACAAAAAT+CGG - chr1_1:58091247-58091266 None:intergenic 35.0%
!!! TGTTTTGGAGGTTCTTTTGT+TGG + chr1_1:58091294-58091313 Msa0031360:intron 35.0%
TCACTGTGAATGTTGTATTG+AGG + chr1_1:58091321-58091340 Msa0031360:intron 35.0%
!!! TGTTTTTGGTCTTTTGTCAC+TGG + chr1_1:58091357-58091376 Msa0031360:intron 35.0%
!! AGGTCTACTGGTTCATAATT+TGG + chr1_1:58091392-58091411 Msa0031360:intron 35.0%
ATTACCAAAATGAGCCAAAG+TGG - chr1_1:58091533-58091552 None:intergenic 35.0%
TATCTAACTTTGTGGGATCA+TGG + chr1_1:58091566-58091585 Msa0031360:intron 35.0%
CCAAGTTAGAGATAAAGAGA+GGG - chr1_1:58091629-58091648 None:intergenic 35.0%
TTCAGAGATAGAGATGACAA+AGG - chr1_1:58091728-58091747 None:intergenic 35.0%
!! TTCGTAACAAGCTTTTTGAG+GGG - chr1_1:58091841-58091860 None:intergenic 35.0%
! CATTCGTAACAAGCTTTTTG+AGG - chr1_1:58091843-58091862 None:intergenic 35.0%
ATATCGTCACCAAATCTTTG+CGG - chr1_1:58091883-58091902 None:intergenic 35.0%
ATTAGAGAGAAGATCCTCTT+TGG - chr1_1:58091950-58091969 None:intergenic 35.0%
TCTCTAATGAAAGATTGGAC+TGG + chr1_1:58092000-58092019 Msa0031360:intron 35.0%
TTTCAGTGAAATTGGTCCTA+TGG - chr1_1:58092065-58092084 None:intergenic 35.0%
GAGTTGCATTTCAGTGAAAT+TGG - chr1_1:58092073-58092092 None:intergenic 35.0%
! TGGGTGGAAGTATAATTTAG+TGG - chr1_1:58092201-58092220 None:intergenic 35.0%
ACACCGATAGGAATCATAAT+AGG - chr1_1:58092312-58092331 None:intergenic 35.0%
GGTGATCCTTTGTAGAAATT+TGG + chr1_1:58092349-58092368 Msa0031360:intron 35.0%
TAGTCCCCAAATTTCTACAA+AGG - chr1_1:58092358-58092377 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_1:58092375-58092394 Msa0031360:intron 35.0%
TGATGCCAATAACTATCATG+AGG + chr1_1:58092600-58092619 Msa0031360:intron 35.0%
GAAAAACTACCTTGTCACAT+CGG + chr1_1:58092629-58092648 Msa0031360:intron 35.0%
AGGAGATATCGAAAATTGCT+CGG - chr1_1:58092702-58092721 None:intergenic 35.0%
! TTTTAGTCATGAAGCACAGT+TGG - chr1_1:58092758-58092777 None:intergenic 35.0%
CTCACTATAATCTTGACCAT+AGG + chr1_1:58092818-58092837 Msa0031360:intron 35.0%
AATGTTTAGATAGACACTGG+TGG - chr1_1:58092893-58092912 None:intergenic 35.0%
TAATCCATGACTGATGAGAT+GGG - chr1_1:58092921-58092940 None:intergenic 35.0%
ATAATCCATGACTGATGAGA+TGG - chr1_1:58092922-58092941 None:intergenic 35.0%
GTAAAATCAGCAGAAGATGA+TGG + chr1_1:58093104-58093123 Msa0031360:intron 35.0%
AAAACATGAGCTGAAACACA+TGG + chr1_1:58093152-58093171 Msa0031360:intron 35.0%
!! TTGGTGTCACTTATGAATGA+CGG - chr1_1:58093184-58093203 None:intergenic 35.0%
TGACACCAAACCTATTCAAA+GGG + chr1_1:58093195-58093214 Msa0031360:intron 35.0%
TATACAGTACCATGATTGAG+GGG - chr1_1:58093314-58093333 None:intergenic 35.0%
CTATACAGTACCATGATTGA+GGG - chr1_1:58093315-58093334 None:intergenic 35.0%
TGCTCAAGGTTTAACACAAA+TGG - chr1_1:58093381-58093400 None:intergenic 35.0%
AAAAAAAACGCTTGTGAGAC+GGG - chr1_1:58093440-58093459 None:intergenic 35.0%
AGAGAAAGTTAAGGCAGAAA+GGG - chr1_1:58093468-58093487 None:intergenic 35.0%
AAGAGAAAGTTAAGGCAGAA+AGG - chr1_1:58093469-58093488 None:intergenic 35.0%
CTGCCTTAACTTTCTCTTAT+AGG + chr1_1:58093471-58093490 Msa0031360:intron 35.0%
AGAAAGAGAGAGAGAAAATG+AGG - chr1_1:58093572-58093591 None:intergenic 35.0%
CTTGTACGATCTTGAGAATA+TGG + chr1_1:58093708-58093727 Msa0031360:CDS 35.0%
GATCTTGAGAATATGGCTAT+TGG + chr1_1:58093715-58093734 Msa0031360:CDS 35.0%
TTGAGAATATGGCTATTGGA+TGG + chr1_1:58093719-58093738 Msa0031360:CDS 35.0%
! CTGTTTCCTACTTTGTTGTA+TGG + chr1_1:58093782-58093801 Msa0031360:intron 35.0%
GTTATAACTTGATGCAACCT+TGG - chr1_1:58093848-58093867 None:intergenic 35.0%
! TGAAGTTGGTTCAAATGAAG+AGG - chr1_1:58093885-58093904 None:intergenic 35.0%
CGTTAACCATAAGATTCATG+TGG - chr1_1:58094063-58094082 None:intergenic 35.0%
ACTGGAATAGTACATACAGT+GGG + chr1_1:58094197-58094216 Msa0031360:CDS 35.0%
!! CTTCACGATAAAGCTGGTTT+TGG - chr1_1:58083744-58083763 None:intergenic 40.0%
CAGTAGAGTGAATGAATGAG+TGG - chr1_1:58083899-58083918 None:intergenic 40.0%
GATGTGAAATGTGAGTATGG+AGG - chr1_1:58083973-58083992 None:intergenic 40.0%
!! TCCGTTGATTTCAATCTTGG+TGG + chr1_1:58084240-58084259 Msa0031360:CDS 40.0%
AATGGTCTTCCTACTAGAAC+TGG + chr1_1:58084264-58084283 Msa0031360:CDS 40.0%
ATGGTCTTCCTACTAGAACT+GGG + chr1_1:58084265-58084284 Msa0031360:CDS 40.0%
ATGCTGCATGATCTACTCAT+CGG - chr1_1:58084467-58084486 None:intergenic 40.0%
AACTTCACTCCGTGTATGTT+TGG - chr1_1:58084697-58084716 None:intergenic 40.0%
! GAGTGAAGTTTGAAGTGAAG+AGG + chr1_1:58084707-58084726 Msa0031360:intron 40.0%
! GTTTGAAGTGAAGAGGAAGA+TGG + chr1_1:58084714-58084733 Msa0031360:intron 40.0%
AAGTGAAGAGGAAGATGGAA+AGG + chr1_1:58084719-58084738 Msa0031360:intron 40.0%
TTACCTAGGTAGTAGGGTTT+AGG + chr1_1:58084760-58084779 Msa0031360:intron 40.0%
TACCTAGGTAGTAGGGTTTA+GGG + chr1_1:58084761-58084780 Msa0031360:intron 40.0%
! GCTGATTCAGTAATGAGATG+GGG - chr1_1:58084798-58084817 None:intergenic 40.0%
! AGCGGTGACTTTTTGCATAT+TGG - chr1_1:58084947-58084966 None:intergenic 40.0%
! AAAAGTCACCGCTATTTCAG+TGG + chr1_1:58084954-58084973 Msa0031360:intron 40.0%
! TCCCGCTGTGAAGATATTTT+AGG + chr1_1:58085177-58085196 Msa0031360:intron 40.0%
TTGGGGACTAAGACTTTGTT+TGG + chr1_1:58085401-58085420 Msa0031360:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG - chr1_1:58085549-58085568 None:intergenic 40.0%
GGTTGCATGAGCTAAATCAT+GGG + chr1_1:58085699-58085718 Msa0031360:intron 40.0%
TGGACATAGTAGTCCTTCTT+TGG - chr1_1:58085894-58085913 None:intergenic 40.0%
TGTCCTACGAAAAGCCAAAT+CGG + chr1_1:58085966-58085985 Msa0031360:CDS 40.0%
TTGACTCTCTATGACCCAAA+GGG + chr1_1:58086122-58086141 Msa0031360:CDS 40.0%
CTGAAGTATGAGATCCCTTT+GGG - chr1_1:58086139-58086158 None:intergenic 40.0%
! TCTGAAGTATGAGATCCCTT+TGG - chr1_1:58086140-58086159 None:intergenic 40.0%
TAAGTTATGCTATAGGGGCA+GGG - chr1_1:58086236-58086255 None:intergenic 40.0%
ATAAGTTATGCTATAGGGGC+AGG - chr1_1:58086237-58086256 None:intergenic 40.0%
TGCCCCTATAGCATAACTTA+TGG + chr1_1:58086236-58086255 Msa0031360:CDS 40.0%
CAACTACTGGATACTATGTC+AGG + chr1_1:58086270-58086289 Msa0031360:CDS 40.0%
!! GGGACTATCTTACTTTTGAC+CGG + chr1_1:58086291-58086310 Msa0031360:CDS 40.0%
!! CTTACTTTTGACCGGATCAA+CGG + chr1_1:58086299-58086318 Msa0031360:CDS 40.0%
TATGGAGATTTCCGTTGATC+CGG - chr1_1:58086313-58086332 None:intergenic 40.0%
!! TCTCATGAGTGGGTTATCTT+CGG + chr1_1:58086491-58086510 Msa0031360:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr1_1:58086578-58086597 Msa0031360:intron 40.0%
GTATCTTAACATGTGCCTTG+AGG - chr1_1:58086596-58086615 None:intergenic 40.0%
TTGCTTAACATGTGCCCTAA+GGG + chr1_1:58086708-58086727 Msa0031360:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr1_1:58086725-58086744 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr1_1:58086726-58086745 None:intergenic 40.0%
ACTTAAACTCGCCACTTGAA+TGG - chr1_1:58086761-58086780 None:intergenic 40.0%
ATTCAAGTGGCGAGTTTAAG+TGG + chr1_1:58086760-58086779 Msa0031360:intron 40.0%
TTCAAGTGGCGAGTTTAAGT+GGG + chr1_1:58086761-58086780 Msa0031360:intron 40.0%
GCTGTACAATCTGGTACATT+GGG + chr1_1:58086909-58086928 Msa0031360:CDS 40.0%
TATTCCATCAAGGGCTTCTT+CGG - chr1_1:58086943-58086962 None:intergenic 40.0%
GAAGCCCTTGATGGAATAAT+TGG + chr1_1:58086945-58086964 Msa0031360:CDS 40.0%
! GTGGTGGAATATTTGCCATA+GGG + chr1_1:58087060-58087079 Msa0031360:CDS 40.0%
TGGTGGAATATTTGCCATAG+GGG + chr1_1:58087061-58087080 Msa0031360:CDS 40.0%
! AGTGGAGTTGTTCTGACTTT+TGG - chr1_1:58087098-58087117 None:intergenic 40.0%
AAAAGTCAGAACAACTCCAC+TGG + chr1_1:58087097-58087116 Msa0031360:CDS 40.0%
GTTGTTGTCACATGACTGAA+AGG + chr1_1:58087392-58087411 Msa0031360:intron 40.0%
TTACACAAGAGGCTGTTTAC+AGG - chr1_1:58087432-58087451 None:intergenic 40.0%
GCTGCATACAATACACCAAT+TGG + chr1_1:58087465-58087484 Msa0031360:intron 40.0%
GCATACAATACACCAATTGG+TGG + chr1_1:58087468-58087487 Msa0031360:intron 40.0%
!!! CGGGCTGCCATTTTTTTTAT+TGG + chr1_1:58087532-58087551 Msa0031360:intron 40.0%
TCTTTGATGGGAATCCTCAT+AGG + chr1_1:58087568-58087587 Msa0031360:intron 40.0%
CTAACTAGCAATCTTAGCCA+AGG - chr1_1:58087610-58087629 None:intergenic 40.0%
CTTGGCTAAGATTGCTAGTT+AGG + chr1_1:58087608-58087627 Msa0031360:intron 40.0%
GTTCATACCCTTAACATTGC+AGG + chr1_1:58087661-58087680 Msa0031360:intron 40.0%
ATAGTGCAGCATTTAAGCCA+CGG + chr1_1:58087829-58087848 Msa0031360:intron 40.0%
AATATACCATCCATGGCTTG+GGG - chr1_1:58087855-58087874 None:intergenic 40.0%
GAAATATACCATCCATGGCT+TGG - chr1_1:58087857-58087876 None:intergenic 40.0%
GACACGTGAAAGAGATTTAG+TGG + chr1_1:58087894-58087913 Msa0031360:intron 40.0%
AATATACCTCCAACTCCTTG+GGG - chr1_1:58088046-58088065 None:intergenic 40.0%
GAATATACCTCCAACTCCTT+GGG - chr1_1:58088047-58088066 None:intergenic 40.0%
ATGAGGGAAAGAGGAATACA+TGG + chr1_1:58088072-58088091 Msa0031360:intron 40.0%
TTCCTCCATATTCATGTCTC+TGG - chr1_1:58088184-58088203 None:intergenic 40.0%
AGAGACATGAATATGGAGGA+AGG + chr1_1:58088183-58088202 Msa0031360:intron 40.0%
TTGTTTATGGGTATATGCGC+TGG + chr1_1:58088213-58088232 Msa0031360:intron 40.0%
TGTTTATGGGTATATGCGCT+GGG + chr1_1:58088214-58088233 Msa0031360:intron 40.0%
ACTCCCTTTCGTATCTTCTT+TGG + chr1_1:58088336-58088355 Msa0031360:intron 40.0%
ACGCCAAAGAAGATACGAAA+GGG - chr1_1:58088342-58088361 None:intergenic 40.0%
AACGCCAAAGAAGATACGAA+AGG - chr1_1:58088343-58088362 None:intergenic 40.0%
TATATGCATGATAGCTCCGT+TGG + chr1_1:58088761-58088780 Msa0031360:intron 40.0%
CAATAGTCAACAACAGACTG+CGG - chr1_1:58088936-58088955 None:intergenic 40.0%
TTGTAGGGCACATTACAATG+TGG + chr1_1:58088953-58088972 Msa0031360:intron 40.0%
CCCTCGGATATATTTGATTC+TGG + chr1_1:58089017-58089036 Msa0031360:CDS 40.0%
! TTGATTCTGGAAATGGGAAG+GGG + chr1_1:58089030-58089049 Msa0031360:CDS 40.0%
!! GATTGATAGTGGAACAACCT+TGG + chr1_1:58089058-58089077 Msa0031360:CDS 40.0%
TATGACAGGAAGATAAGCCA+AGG - chr1_1:58089078-58089097 None:intergenic 40.0%
GATGTTGTCACATACCCAAT+AGG - chr1_1:58089461-58089480 None:intergenic 40.0%
!!! TCCAATATTTTGAAGCCTGC+TGG + chr1_1:58089543-58089562 Msa0031360:intron 40.0%
TCCAGCAGGCTTCAAAATAT+TGG - chr1_1:58089547-58089566 None:intergenic 40.0%
!!! AATATTTTGAAGCCTGCTGG+AGG + chr1_1:58089546-58089565 Msa0031360:intron 40.0%
GACATATGACAGTAGCAAGT+AGG + chr1_1:58089597-58089616 Msa0031360:intron 40.0%
AACAAGTGCACTTGATTCTC+TGG + chr1_1:58090081-58090100 Msa0031360:intron 40.0%
CAACACTGCAAAGGTTACAA+TGG - chr1_1:58090134-58090153 None:intergenic 40.0%
! TGTAACCTTTGCAGTGTTGA+TGG + chr1_1:58090135-58090154 Msa0031360:intron 40.0%
CAGCCTAGAGGACAAAATTA+AGG - chr1_1:58090634-58090653 None:intergenic 40.0%
! CTTAATTTTGTCCTCTAGGC+TGG + chr1_1:58090632-58090651 Msa0031360:intron 40.0%
! TTTTCTGCCAGCCAATACAT+CGG - chr1_1:58090661-58090680 None:intergenic 40.0%
! GAAAAGTGTGACCCAAACTA+AGG + chr1_1:58090676-58090695 Msa0031360:CDS 40.0%
GTCCTTTCCATCCTTAGTTT+GGG - chr1_1:58090690-58090709 None:intergenic 40.0%
TGTCCTTTCCATCCTTAGTT+TGG - chr1_1:58090691-58090710 None:intergenic 40.0%
! TCAACTTGGTATCTAGAGCA+AGG + chr1_1:58090920-58090939 Msa0031360:intron 40.0%
! GCTTATTGCTGCAGTGTTTT+TGG + chr1_1:58091343-58091362 Msa0031360:intron 40.0%
CAAACATTCCAACAACAGTG+TGG - chr1_1:58091451-58091470 None:intergenic 40.0%
TGGCTGGAGATGAAATGTAT+TGG - chr1_1:58091513-58091532 None:intergenic 40.0%
TGGGATCATGGAATTTAGAC+TGG + chr1_1:58091578-58091597 Msa0031360:intron 40.0%
TGGAATTTAGACTGGTGCTT+CGG + chr1_1:58091586-58091605 Msa0031360:intron 40.0%
CCCTCTCTTTATCTCTAACT+TGG + chr1_1:58091626-58091645 Msa0031360:intron 40.0%
GCCAAGTTAGAGATAAAGAG+AGG - chr1_1:58091630-58091649 None:intergenic 40.0%
TCACAACATCACCCTACTAA+TGG + chr1_1:58091665-58091684 Msa0031360:intron 40.0%
! AATACCAGTAACTTGTGCCT+TGG - chr1_1:58091693-58091712 None:intergenic 40.0%
AAGGCACAAGTTACTGGTAT+TGG + chr1_1:58091692-58091711 Msa0031360:intron 40.0%
TATCGTCACCAAATCTTTGC+GGG - chr1_1:58091882-58091901 None:intergenic 40.0%
AAAGGCTGAATACCAGGTTA+AGG - chr1_1:58092140-58092159 None:intergenic 40.0%
TGGTATTCAGCCTTTGTACT+CGG + chr1_1:58092145-58092164 Msa0031360:intron 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_1:58092217-58092236 None:intergenic 40.0%
AGAGTCCTATCTAACCAATG+TGG + chr1_1:58092441-58092460 Msa0031360:intron 40.0%
GAGTCCTATCTAACCAATGT+GGG + chr1_1:58092442-58092461 Msa0031360:intron 40.0%
! TAGTCCCACATTGGTTAGAT+AGG - chr1_1:58092449-58092468 None:intergenic 40.0%
AAAGCCAACACAAGGCAATT+AGG + chr1_1:58092482-58092501 Msa0031360:intron 40.0%
AAGCCAACACAAGGCAATTA+GGG + chr1_1:58092483-58092502 Msa0031360:intron 40.0%
TTAGGGGCAGATCTCAATAA+AGG + chr1_1:58092500-58092519 Msa0031360:intron 40.0%
CCTCTCCTCATGATAGTTAT+TGG - chr1_1:58092608-58092627 None:intergenic 40.0%
CCAATAACTATCATGAGGAG+AGG + chr1_1:58092605-58092624 Msa0031360:intron 40.0%
TGAACTATCTCACTGTGATC+AGG - chr1_1:58092674-58092693 None:intergenic 40.0%
! TGTTTTGCATGGTGAGTTAG+AGG - chr1_1:58092722-58092741 None:intergenic 40.0%
TGGATTATCTCCACACTGAA+TGG + chr1_1:58092934-58092953 Msa0031360:intron 40.0%
GGATTATCTCCACACTGAAT+GGG + chr1_1:58092935-58092954 Msa0031360:intron 40.0%
!! AAGATGATGGAGCCAGATTA+GGG + chr1_1:58093117-58093136 Msa0031360:intron 40.0%
GTGACACCAAACCTATTCAA+AGG + chr1_1:58093194-58093213 Msa0031360:intron 40.0%
GACACCAAACCTATTCAAAG+GGG + chr1_1:58093196-58093215 Msa0031360:intron 40.0%
TTCTCCCCTTTGAATAGGTT+TGG - chr1_1:58093203-58093222 None:intergenic 40.0%
GAATCTTCTCCCCTTTGAAT+AGG - chr1_1:58093208-58093227 None:intergenic 40.0%
ATTCAAAGGGGAGAAGATTC+TGG + chr1_1:58093208-58093227 Msa0031360:intron 40.0%
ATACAGTACCATGATTGAGG+GGG - chr1_1:58093313-58093332 None:intergenic 40.0%
GCTATACAGTACCATGATTG+AGG - chr1_1:58093316-58093335 None:intergenic 40.0%
GAGAAAGTTAAGGCAGAAAG+GGG - chr1_1:58093467-58093486 None:intergenic 40.0%
GAGAGAGAAAATGAGGATCA+AGG - chr1_1:58093565-58093584 None:intergenic 40.0%
CACATCCAATACTTGTGAGA+AGG - chr1_1:58093624-58093643 None:intergenic 40.0%
TCAAACTGGAGTAGGTATAG+AGG - chr1_1:58093916-58093935 None:intergenic 40.0%
ATAACAGATGAGGCTTCGTT+TGG - chr1_1:58094026-58094045 None:intergenic 40.0%
CTCTTCCAGCATTAAAGTGA+AGG + chr1_1:58094166-58094185 Msa0031360:CDS 40.0%
TGCATCCTTCACTTTAATGC+TGG - chr1_1:58094174-58094193 None:intergenic 40.0%
GACTGGAATAGTACATACAG+TGG + chr1_1:58094196-58094215 Msa0031360:CDS 40.0%
ACTGCACACCTTATCATTCA+AGG - chr1_1:58094367-58094386 None:intergenic 40.0%
GGAATTTGAGTCCACTGAGT+GGG + chr1_1:58083687-58083706 Msa0031360:five_prime_UTR 45.0%
CAAGCTTAACCGACTAAGAG+AGG - chr1_1:58083937-58083956 None:intergenic 45.0%
CGTCGGAAAACGAGTTTAAG+TGG + chr1_1:58084174-58084193 Msa0031360:CDS 45.0%
GAGAGGTTACCTAGGTAGTA+GGG + chr1_1:58084754-58084773 Msa0031360:intron 45.0%
ACCTAGGTAGTAGGGTTTAG+GGG + chr1_1:58084762-58084781 Msa0031360:intron 45.0%
! TCACCGCTATTTCAGTGGTA+TGG + chr1_1:58084959-58084978 Msa0031360:intron 45.0%
!!! CAGCATATTGGCTTTTGTCG+TGG + chr1_1:58084990-58085009 Msa0031360:intron 45.0%
!! GCTGTTTTCATAAGCTGTCC+TGG + chr1_1:58085528-58085547 Msa0031360:intron 45.0%
GGGTTGCATGAGCTAAATCA+TGG + chr1_1:58085698-58085717 Msa0031360:intron 45.0%
!!! ACACCGATTTGGCTTTTCGT+AGG - chr1_1:58085972-58085991 None:intergenic 45.0%
CTTGACTCTCTATGACCCAA+AGG + chr1_1:58086121-58086140 Msa0031360:CDS 45.0%
AGGAATCGGACCATCATATG+TGG - chr1_1:58086195-58086214 None:intergenic 45.0%
ACATATGATGGTCCGATTCC+TGG + chr1_1:58086194-58086213 Msa0031360:CDS 45.0%
GTTGCTTAACATGTGCCCTA+AGG + chr1_1:58086707-58086726 Msa0031360:intron 45.0%
ACCCACAGAGATGCAAAAGA+GGG - chr1_1:58086866-58086885 None:intergenic 45.0%
CGCTGTACAATCTGGTACAT+TGG + chr1_1:58086908-58086927 Msa0031360:CDS 45.0%
CACTGCCTTGACAATATTCG+TGG + chr1_1:58087038-58087057 Msa0031360:CDS 45.0%
TGCCTTGACAATATTCGTGG+TGG + chr1_1:58087041-58087060 Msa0031360:CDS 45.0%
CACCACCACGAATATTGTCA+AGG - chr1_1:58087046-58087065 None:intergenic 45.0%
CTTGACAATATTCGTGGTGG+TGG + chr1_1:58087044-58087063 Msa0031360:CDS 45.0%
!! GGTGGTGGAATATTTGCCAT+AGG + chr1_1:58087059-58087078 Msa0031360:CDS 45.0%
ATTTGCCATAGGGGAATTGG+TGG + chr1_1:58087070-58087089 Msa0031360:CDS 45.0%
GATGGGAATCCTCATAGGTA+TGG + chr1_1:58087573-58087592 Msa0031360:intron 45.0%
AACTTGCAGCCATACCTATG+AGG - chr1_1:58087585-58087604 None:intergenic 45.0%
GTATGGCTGCAAGTTAACCT+TGG + chr1_1:58087590-58087609 Msa0031360:intron 45.0%
TTAGGTAAAGCCGTCTTCAG+AGG + chr1_1:58087626-58087645 Msa0031360:intron 45.0%
! TAGAACTACGCCTCTGAAGA+CGG - chr1_1:58087639-58087658 None:intergenic 45.0%
! TCTTCAGAGGCGTAGTTCTA+GGG + chr1_1:58087639-58087658 Msa0031360:intron 45.0%
!! AAAACTCTAGAGCCCTACAG+TGG - chr1_1:58087725-58087744 None:intergenic 45.0%
AATGAAAGGTGACCAGACTC+AGG + chr1_1:58087965-58087984 Msa0031360:intron 45.0%
GGAATATACCTCCAACTCCT+TGG - chr1_1:58088048-58088067 None:intergenic 45.0%
GTGGGAGAGACAATGTTAAG+TGG + chr1_1:58088105-58088124 Msa0031360:intron 45.0%
GAAAGGAGGTGGTTATGAAG+AGG + chr1_1:58088158-58088177 Msa0031360:intron 45.0%
AGAGGCCAGAGACATGAATA+TGG + chr1_1:58088176-58088195 Msa0031360:intron 45.0%
! TGTCACACCCTTGTTTGATC+TGG + chr1_1:58088662-58088681 Msa0031360:intron 45.0%
AAGCGCACCAGATCAAACAA+GGG - chr1_1:58088672-58088691 None:intergenic 45.0%
TAAGCGCACCAGATCAAACA+AGG - chr1_1:58088673-58088692 None:intergenic 45.0%
GAAGGGCAATTAAGTCCCAT+AGG + chr1_1:58088801-58088820 Msa0031360:intron 45.0%
TGATGTTCTACAGCTTCCCT+CGG + chr1_1:58089001-58089020 Msa0031360:CDS 45.0%
AAGGGGACAGTGATTGATAG+TGG + chr1_1:58089047-58089066 Msa0031360:CDS 45.0%
ATGGCGTACTTTCCAGCATA+GGG - chr1_1:58089257-58089276 None:intergenic 45.0%
AATGGCGTACTTTCCAGCAT+AGG - chr1_1:58089258-58089277 None:intergenic 45.0%
! GCTAATCATTTTCCTCCAGC+AGG - chr1_1:58089561-58089580 None:intergenic 45.0%
GCACTTGATTCTCTGGCATA+TGG + chr1_1:58090088-58090107 Msa0031360:intron 45.0%
!! AACCTTTGCAGTGTTGATGG+TGG + chr1_1:58090138-58090157 Msa0031360:intron 45.0%
ATCCACCATCAACACTGCAA+AGG - chr1_1:58090143-58090162 None:intergenic 45.0%
AGTGTGACCCAAACTAAGGA+TGG + chr1_1:58090680-58090699 Msa0031360:CDS 45.0%
GACCCAAACTAAGGATGGAA+AGG + chr1_1:58090685-58090704 Msa0031360:CDS 45.0%
GGAAAGGACATGACACTTCT+TGG + chr1_1:58090701-58090720 Msa0031360:CDS 45.0%
AAGGACATGACACTTCTTGG+AGG + chr1_1:58090704-58090723 Msa0031360:CDS 45.0%
TACGCGTTCAGTCTTCGTTA+AGG + chr1_1:58090971-58090990 Msa0031360:intron 45.0%
TCACGTGCCAAATAGACGTT+CGG - chr1_1:58091162-58091181 None:intergenic 45.0%
! TCGCCTTCTCCGATTTTTGT+TGG + chr1_1:58091235-58091254 Msa0031360:intron 45.0%
! CGCCTTCTCCGATTTTTGTT+GGG + chr1_1:58091236-58091255 Msa0031360:intron 45.0%
GTCCCAACAAAAATCGGAGA+AGG - chr1_1:58091241-58091260 None:intergenic 45.0%
TATCGCATCACAAGGTCTAC+TGG + chr1_1:58091380-58091399 Msa0031360:intron 45.0%
CATTTCATCTCCAGCCACTT+TGG + chr1_1:58091516-58091535 Msa0031360:intron 45.0%
TCACCCTACTAATGGTTCCA+AGG + chr1_1:58091673-58091692 Msa0031360:intron 45.0%
GTGCCTTGGAACCATTAGTA+GGG - chr1_1:58091679-58091698 None:intergenic 45.0%
TGTGCCTTGGAACCATTAGT+AGG - chr1_1:58091680-58091699 None:intergenic 45.0%
! GAGAGTGCGAGTAAGTTTAC+TGG - chr1_1:58091795-58091814 None:intergenic 45.0%
ATCGTCACCAAATCTTTGCG+GGG - chr1_1:58091881-58091900 None:intergenic 45.0%
CTGGACGAAAGATACGAAGT+TGG + chr1_1:58092019-58092038 Msa0031360:intron 45.0%
ACGAAAGATACGAAGTTGGC+TGG + chr1_1:58092023-58092042 Msa0031360:intron 45.0%
CGAGCACAAAAGCTCACATA+TGG + chr1_1:58092108-58092127 Msa0031360:intron 45.0%
GAGTACAAAGGCTGAATACC+AGG - chr1_1:58092146-58092165 None:intergenic 45.0%
TAATACACGGCCGAGTACAA+AGG - chr1_1:58092158-58092177 None:intergenic 45.0%
CAGTAGCTTTCAGGCATAGA+CGG - chr1_1:58092249-58092268 None:intergenic 45.0%
CCAATTGAGCAGTAGCTTTC+AGG - chr1_1:58092258-58092277 None:intergenic 45.0%
CCTGAAAGCTACTGCTCAAT+TGG + chr1_1:58092255-58092274 Msa0031360:intron 45.0%
CTACAAAGGATCACCTCGAA+AGG - chr1_1:58092344-58092363 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_1:58092387-58092406 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_1:58092384-58092403 Msa0031360:intron 45.0%
!! TTGCCTTGTGTTGGCTTTGA+GGG - chr1_1:58092480-58092499 None:intergenic 45.0%
!! ATTGCCTTGTGTTGGCTTTG+AGG - chr1_1:58092481-58092500 None:intergenic 45.0%
AGCCAACACAAGGCAATTAG+GGG + chr1_1:58092484-58092503 Msa0031360:intron 45.0%
GGGCAGATCTCAATAAAGGT+GGG + chr1_1:58092504-58092523 Msa0031360:intron 45.0%
CGTATTATGCCGATGTGACA+AGG - chr1_1:58092641-58092660 None:intergenic 45.0%
TCGGCATAATACGACACATC+TGG + chr1_1:58092648-58092667 Msa0031360:intron 45.0%
! GTGTATACCCCCTTTTGCTT+TGG + chr1_1:58092843-58092862 Msa0031360:intron 45.0%
! TATACCCCCTTTTGCTTTGG+CGG + chr1_1:58092846-58092865 Msa0031360:intron 45.0%
AACACCCATCTCATCAGTCA+TGG + chr1_1:58092914-58092933 Msa0031360:intron 45.0%
!! AGGAAGTATCCCATTCAGTG+TGG - chr1_1:58092947-58092966 None:intergenic 45.0%
!! GAAGATGATGGAGCCAGATT+AGG + chr1_1:58093116-58093135 Msa0031360:intron 45.0%
!! AGATGATGGAGCCAGATTAG+GGG + chr1_1:58093118-58093137 Msa0031360:intron 45.0%
GTCACTTATGAATGACGGTG+TGG - chr1_1:58093179-58093198 None:intergenic 45.0%
TACAGTACCATGATTGAGGG+GGG - chr1_1:58093312-58093331 None:intergenic 45.0%
TCAGAGAGAGAGAATGCTCA+AGG - chr1_1:58093395-58093414 None:intergenic 45.0%
TAGAGGAGGAATGGTGAAGT+TGG - chr1_1:58093899-58093918 None:intergenic 45.0%
GAGTAGGTATAGAGGAGGAA+TGG - chr1_1:58093908-58093927 None:intergenic 45.0%
AACTGGAGTAGGTATAGAGG+AGG - chr1_1:58093913-58093932 None:intergenic 45.0%
GATGGCTGCTATAACAGATG+AGG - chr1_1:58094036-58094055 None:intergenic 45.0%
AAAGTGAAGGATGCAACGAC+TGG + chr1_1:58094179-58094198 Msa0031360:CDS 45.0%
GAATGATAAGGTGTGCAGTG+TGG + chr1_1:58094368-58094387 Msa0031360:three_prime_UTR 45.0%
!! AAAATACAAAAATTAAATAA+GGG - chr1_1:58086073-58086092 None:intergenic 5.0%
!! ATATATATATATATATATTG+AGG - chr1_1:58088406-58088425 None:intergenic 5.0%
CGGAATTTGAGTCCACTGAG+TGG + chr1_1:58083686-58083705 Msa0031360:five_prime_UTR 50.0%
CATCACGATCATCTTCGTCG+TGG + chr1_1:58084204-58084223 Msa0031360:CDS 50.0%
! GAGACTCACCCAGTTCTAGT+AGG - chr1_1:58084276-58084295 None:intergenic 50.0%
AAAGGCAGTTTAGCGACGAG+AGG + chr1_1:58084737-58084756 Msa0031360:intron 50.0%
TTAGCGACGAGAGGTTACCT+AGG + chr1_1:58084746-58084765 Msa0031360:intron 50.0%
CGAGAGGTTACCTAGGTAGT+AGG + chr1_1:58084753-58084772 Msa0031360:intron 50.0%
ACCCCTAAACCCTACTACCT+AGG - chr1_1:58084766-58084785 None:intergenic 50.0%
AAGCTGTCCTGGAGAGCTTA+TGG + chr1_1:58085539-58085558 Msa0031360:intron 50.0%
TGGTCCGATTCCTGGTTGTA+AGG + chr1_1:58086202-58086221 Msa0031360:CDS 50.0%
TCCGATTCCTGGTTGTAAGG+CGG + chr1_1:58086205-58086224 Msa0031360:CDS 50.0%
TCCGCCTTACAACCAGGAAT+CGG - chr1_1:58086209-58086228 None:intergenic 50.0%
! GGAGATGGAAGTGCAACTAC+TGG + chr1_1:58086257-58086276 Msa0031360:CDS 50.0%
!!! TGCTATTTTGCGGTGCGGTA+TGG - chr1_1:58086331-58086350 None:intergenic 50.0%
!!! GATGCTGCTATTTTGCGGTG+CGG - chr1_1:58086336-58086355 None:intergenic 50.0%
! TCCCCTCTTTTGCATCTCTG+TGG + chr1_1:58086861-58086880 Msa0031360:intron 50.0%
CCCACAGAGATGCAAAAGAG+GGG - chr1_1:58086865-58086884 None:intergenic 50.0%
! CCCCTCTTTTGCATCTCTGT+GGG + chr1_1:58086862-58086881 Msa0031360:intron 50.0%
GACCCACAGAGATGCAAAAG+AGG - chr1_1:58086867-58086886 None:intergenic 50.0%
TCTTTGCTTCCTGACAGGTG+TGG + chr1_1:58086885-58086904 Msa0031360:intron 50.0%
TCTTCCGAAGAAGCCCTTGA+TGG + chr1_1:58086936-58086955 Msa0031360:CDS 50.0%
!! ACAGCTTGCTGCATCTCGAA+AGG + chr1_1:58086998-58087017 Msa0031360:CDS 50.0%
TGGTTCCACCAATTCCCCTA+TGG - chr1_1:58087078-58087097 None:intergenic 50.0%
GTGTCAACAAGCTTTGCCCT+TGG - chr1_1:58087191-58087210 None:intergenic 50.0%
ACAACTTTACCGTTGCGCCA+AGG - chr1_1:58087377-58087396 None:intergenic 50.0%
CTAAAGCTCTCGCATACGCA+AGG - chr1_1:58087507-58087526 None:intergenic 50.0%
! ATGCGAGAGCTTTAGTGCAC+CGG + chr1_1:58087512-58087531 Msa0031360:intron 50.0%
! GTCTTCAGAGGCGTAGTTCT+AGG + chr1_1:58087638-58087657 Msa0031360:intron 50.0%
CTGTATTGAGCTCCTGAGTC+TGG - chr1_1:58087980-58087999 None:intergenic 50.0%
GGCCAGAGACATGAATATGG+AGG + chr1_1:58088179-58088198 Msa0031360:intron 50.0%
ATGGGTATATGCGCTGGGTT+TGG + chr1_1:58088219-58088238 Msa0031360:intron 50.0%
TGGGTATATGCGCTGGGTTT+GGG + chr1_1:58088220-58088239 Msa0031360:intron 50.0%
ACACAAAACACCTGGGACCT+GGG - chr1_1:58090378-58090397 None:intergenic 50.0%
TAGGCTGGTGTCCGATGTAT+TGG + chr1_1:58090647-58090666 Msa0031360:intron 50.0%
!! GGTATCTCAGTTGGTGATGG+CGG - chr1_1:58091056-58091075 None:intergenic 50.0%
!! TGAAAGGGTGTTCAACGGCA+GGG - chr1_1:58091125-58091144 None:intergenic 50.0%
!! ATGAAAGGGTGTTCAACGGC+AGG - chr1_1:58091126-58091145 None:intergenic 50.0%
!! GCGCATGAAAGGGTGTTCAA+CGG - chr1_1:58091130-58091149 None:intergenic 50.0%
AATAGACGTTCGGAGTGTGG+AGG - chr1_1:58091152-58091171 None:intergenic 50.0%
CCAAATAGACGTTCGGAGTG+TGG - chr1_1:58091155-58091174 None:intergenic 50.0%
CCACACTCCGAACGTCTATT+TGG + chr1_1:58091152-58091171 Msa0031360:intron 50.0%
TTGGGACAACTTCCAGTGTG+TGG + chr1_1:58091254-58091273 Msa0031360:intron 50.0%
TGGGACAACTTCCAGTGTGT+GGG + chr1_1:58091255-58091274 Msa0031360:intron 50.0%
CCAAAACACGTGTCAAGCGT+GGG - chr1_1:58091282-58091301 None:intergenic 50.0%
TCCAAAACACGTGTCAAGCG+TGG - chr1_1:58091283-58091302 None:intergenic 50.0%
!! ACGCTTGACACGTGTTTTGG+AGG + chr1_1:58091282-58091301 Msa0031360:intron 50.0%
GTCACTGGTATCGCATCACA+AGG + chr1_1:58091372-58091391 Msa0031360:intron 50.0%
TTGTGTCGCCACACTGTTGT+TGG + chr1_1:58091440-58091459 Msa0031360:intron 50.0%
CCAAAATGAGCCAAAGTGGC+TGG - chr1_1:58091529-58091548 None:intergenic 50.0%
!! CCAGCCACTTTGGCTCATTT+TGG + chr1_1:58091526-58091545 Msa0031360:intron 50.0%
GGTTCCAAGGCACAAGTTAC+TGG + chr1_1:58091686-58091705 Msa0031360:intron 50.0%
TTGAGGACCCCGCAAAGATT+TGG + chr1_1:58091871-58091890 Msa0031360:intron 50.0%
ATATGGCGTGAGCCTTAACC+TGG + chr1_1:58092125-58092144 Msa0031360:intron 50.0%
AGGAGCTCGTTTACACCGAT+AGG - chr1_1:58092324-58092343 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_1:58092328-58092347 Msa0031360:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_1:58092389-58092408 Msa0031360:intron 50.0%
! GGGTGGATTTAGTCCCACAT+TGG - chr1_1:58092458-58092477 None:intergenic 50.0%
!! TGCCTTGTGTTGGCTTTGAG+GGG - chr1_1:58092479-58092498 None:intergenic 50.0%
TGCCCCTAATTGCCTTGTGT+TGG - chr1_1:58092489-58092508 None:intergenic 50.0%
GGGGCAGATCTCAATAAAGG+TGG + chr1_1:58092503-58092522 Msa0031360:intron 50.0%
! AAGGGGGTATACACAGCCTA+TGG - chr1_1:58092837-58092856 None:intergenic 50.0%
! ATACCCCCTTTTGCTTTGGC+GGG + chr1_1:58092847-58092866 Msa0031360:intron 50.0%
AAAGCCCGCCAAAGCAAAAG+GGG - chr1_1:58092854-58092873 None:intergenic 50.0%
GAAAGCCCGCCAAAGCAAAA+GGG - chr1_1:58092855-58092874 None:intergenic 50.0%
TGAAAGCCCGCCAAAGCAAA+AGG - chr1_1:58092856-58092875 None:intergenic 50.0%
!! TGCTTTGGCGGGCTTTCAAT+CGG + chr1_1:58092858-58092877 Msa0031360:intron 50.0%
GTGGGAGATAATCGACTGCA+TGG + chr1_1:58093020-58093039 Msa0031360:intron 50.0%
AAGCGCTTCTACCCCTAATC+TGG - chr1_1:58093132-58093151 None:intergenic 50.0%
CAAAGGGGAGAAGATTCTGG+TGG + chr1_1:58093211-58093230 Msa0031360:intron 50.0%
! ACCATGATTGAGGGGGGTAT+GGG - chr1_1:58093306-58093325 None:intergenic 50.0%
TACCATGATTGAGGGGGGTA+TGG - chr1_1:58093307-58093326 None:intergenic 50.0%
! GGTGTGCAGTGTGGTTGATA+TGG + chr1_1:58094377-58094396 Msa0031360:three_prime_UTR 50.0%
!!! TGCTGCTTTTGCCCACTCAG+TGG - chr1_1:58083701-58083720 None:intergenic 55.0%
! TGGTGTTTCAGGTGCAGCGT+CGG + chr1_1:58084157-58084176 Msa0031360:CDS 55.0%
! TGGGCTTGGCTCTCCAAAGA+AGG + chr1_1:58085878-58085897 Msa0031360:CDS 55.0%
GGTGTTTCCGCCTTACAACC+AGG - chr1_1:58086215-58086234 None:intergenic 55.0%
GTGGGTCTTTGCTTCCTGAC+AGG + chr1_1:58086880-58086899 Msa0031360:intron 55.0%
AGGTGTGGCGCTGTACAATC+TGG + chr1_1:58086900-58086919 Msa0031360:intron 55.0%
TTTGGGAAGCCTTGGCGCAA+CGG + chr1_1:58087365-58087384 Msa0031360:intron 55.0%
CTCTCGCATACGCAAGGTCT+GGG - chr1_1:58087501-58087520 None:intergenic 55.0%
! TGCGAGAGCTTTAGTGCACC+GGG + chr1_1:58087513-58087532 Msa0031360:intron 55.0%
!! CTCTAGAGCCCTACAGTGGT+TGG - chr1_1:58087721-58087740 None:intergenic 55.0%
CTGGAAATCGAGTAGGGCCT+AGG + chr1_1:58087935-58087954 Msa0031360:intron 55.0%
TATATGCGCTGGGTTTGGGC+AGG + chr1_1:58088224-58088243 Msa0031360:intron 55.0%
ACCTGGGTACAGTTCGGAGA+GGG - chr1_1:58090362-58090381 None:intergenic 55.0%
CACACAAAACACCTGGGACC+TGG - chr1_1:58090379-58090398 None:intergenic 55.0%
TACATCGGACACCAGCCTAG+AGG - chr1_1:58090646-58090665 None:intergenic 55.0%
! CTGGTGTCCGATGTATTGGC+TGG + chr1_1:58090651-58090670 Msa0031360:CDS 55.0%
!! GGCGGTATCTCAGTTGGTGA+TGG - chr1_1:58091059-58091078 None:intergenic 55.0%
TCGTGTGGCGGTATCTCAGT+TGG - chr1_1:58091065-58091084 None:intergenic 55.0%
GATGGCAGATCAGCAGTGTC+CGG - chr1_1:58091094-58091113 None:intergenic 55.0%
AACGGCAGGGTTTCAGACGA+TGG - chr1_1:58091112-58091131 None:intergenic 55.0%
! GAGTGTGGAGGCGCATGAAA+GGG - chr1_1:58091140-58091159 None:intergenic 55.0%
GTCGCAAATGTACGCTCGGA+AGG - chr1_1:58091196-58091215 None:intergenic 55.0%
! CCCACGCTTGACACGTGTTT+TGG + chr1_1:58091279-58091298 Msa0031360:intron 55.0%
GGTGCTTCGGATCATGTCGT+TGG + chr1_1:58091599-58091618 Msa0031360:intron 55.0%
! AGGCATAGACGGCTGACTTC+AGG - chr1_1:58092238-58092257 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_1:58092397-58092416 None:intergenic 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG - chr1_1:58092475-58092494 None:intergenic 55.0%
ACCCCCTCAAAGCCAACACA+AGG + chr1_1:58092474-58092493 Msa0031360:intron 55.0%
!! GCCTTGTGTTGGCTTTGAGG+GGG - chr1_1:58092478-58092497 None:intergenic 55.0%
AAGCCCGCCAAAGCAAAAGG+GGG - chr1_1:58092853-58092872 None:intergenic 55.0%
GGGCTTTCAATCGGTCCACA+TGG + chr1_1:58092867-58092886 Msa0031360:intron 55.0%
GATAGACACTGGTGGCCATG+TGG - chr1_1:58092885-58092904 None:intergenic 55.0%
ACCCATACCCCCCTCAATCA+TGG + chr1_1:58093302-58093321 Msa0031360:intron 55.0%
TGTACAGCGCCACACCTGTC+AGG - chr1_1:58086897-58086916 None:intergenic 60.0%
GCATACGCAAGGTCTGGGAG+GGG - chr1_1:58087496-58087515 None:intergenic 60.0%
CGCATACGCAAGGTCTGGGA+GGG - chr1_1:58087497-58087516 None:intergenic 60.0%
TCGCATACGCAAGGTCTGGG+AGG - chr1_1:58087498-58087517 None:intergenic 60.0%
GCTCTCGCATACGCAAGGTC+TGG - chr1_1:58087502-58087521 None:intergenic 60.0%
GCAGTTAAGCTGTGGCCCCA+AGG + chr1_1:58088028-58088047 Msa0031360:intron 60.0%
AAGCTGTGGCCCCAAGGAGT+TGG + chr1_1:58088034-58088053 Msa0031360:intron 60.0%
GCTGGGTTTGGGCAGGAAGT+AGG + chr1_1:58088231-58088250 Msa0031360:intron 60.0%
TCCCTCTCCGAACTGTACCC+AGG + chr1_1:58090358-58090377 Msa0031360:intron 60.0%
GACCTGGGTACAGTTCGGAG+AGG - chr1_1:58090363-58090382 None:intergenic 60.0%
CCTGGGACCTGGGTACAGTT+CGG - chr1_1:58090368-58090387 None:intergenic 60.0%
TACCGCCACACGACTGTGAC+CGG + chr1_1:58091072-58091091 Msa0031360:intron 60.0%
AGTGTCCGGTCACAGTCGTG+TGG - chr1_1:58091080-58091099 None:intergenic 60.0%
! GGAGTGTGGAGGCGCATGAA+AGG - chr1_1:58091141-58091160 None:intergenic 60.0%
CGGCGTCGCAAATGTACGCT+CGG - chr1_1:58091200-58091219 None:intergenic 60.0%
GGCGAGCCAGCTGGAACAAA+CGG - chr1_1:58091220-58091239 None:intergenic 60.0%
CTGGGAGGGGTCCCACCAAT+TGG - chr1_1:58087483-58087502 None:intergenic 65.0%
TAAGCCACGGCCCCAAGCCA+TGG + chr1_1:58087842-58087861 Msa0031360:intron 65.0%
CTGTGGCCCCAAGGAGTTGG+AGG + chr1_1:58088037-58088056 Msa0031360:intron 65.0%
CCGAACTGTACCCAGGTCCC+AGG + chr1_1:58090365-58090384 Msa0031360:intron 65.0%
GTCCGGTCACAGTCGTGTGG+CGG - chr1_1:58091077-58091096 None:intergenic 65.0%
GCGACGCCGTTTGTTCCAGC+TGG + chr1_1:58091211-58091230 Msa0031360:intron 65.0%
ATCGGAGAAGGCGAGCCAGC+TGG - chr1_1:58091229-58091248 None:intergenic 65.0%
CAAGCGTGGGACCCACACAC+TGG - chr1_1:58091269-58091288 None:intergenic 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_1:58092531-58092550 Msa0031360:intron 65.0%
CAACACACCCCCTCACGCTC+GGG + chr1_1:58092532-58092551 Msa0031360:intron 65.0%
AACACACCCCCTCACGCTCG+GGG + chr1_1:58092533-58092552 Msa0031360:intron 65.0%
AAATCCCGCCCCGAGCGTGA+GGG - chr1_1:58092544-58092563 None:intergenic 65.0%
! CCATCCATGGCTTGGGGCCG+TGG - chr1_1:58087849-58087868 None:intergenic 70.0%
CCACGGCCCCAAGCCATGGA+TGG + chr1_1:58087846-58087865 Msa0031360:intron 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_1:58092534-58092553 None:intergenic 70.0%
AATCCCGCCCCGAGCGTGAG+GGG - chr1_1:58092543-58092562 None:intergenic 70.0%
GAAATCCCGCCCCGAGCGTG+AGG - chr1_1:58092545-58092564 None:intergenic 70.0%
ACACCCCCTCACGCTCGGGG+CGG + chr1_1:58092536-58092555 Msa0031360:intron 75.0%
ATCCCGCCCCGAGCGTGAGG+GGG - chr1_1:58092542-58092561 None:intergenic 75.0%
! CACCCCCTCACGCTCGGGGC+GGG + chr1_1:58092537-58092556 Msa0031360:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58083601 58094512 58083601 ID=Msa0031360;Name=Msa0031360
chr1_1 mRNA 58083601 58094512 58083601 ID=Msa0031360-mRNA-1;Parent=Msa0031360;Name=Msa0031360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=483|1|1|1|0.88|0.9|10|196|479
chr1_1 exon 58083601 58084286 58083601 ID=Msa0031360-mRNA-1:exon:17683;Parent=Msa0031360-mRNA-1
chr1_1 exon 58085860 58085989 58085860 ID=Msa0031360-mRNA-1:exon:17684;Parent=Msa0031360-mRNA-1
chr1_1 exon 58086116 58086363 58086116 ID=Msa0031360-mRNA-1:exon:17685;Parent=Msa0031360-mRNA-1
chr1_1 exon 58086902 58087129 58086902 ID=Msa0031360-mRNA-1:exon:17686;Parent=Msa0031360-mRNA-1
chr1_1 exon 58088959 58089121 58088959 ID=Msa0031360-mRNA-1:exon:17687;Parent=Msa0031360-mRNA-1
chr1_1 exon 58089194 58089267 58089194 ID=Msa0031360-mRNA-1:exon:17688;Parent=Msa0031360-mRNA-1
chr1_1 exon 58090149 58090242 58090149 ID=Msa0031360-mRNA-1:exon:17689;Parent=Msa0031360-mRNA-1
chr1_1 exon 58090650 58090725 58090650 ID=Msa0031360-mRNA-1:exon:17690;Parent=Msa0031360-mRNA-1
chr1_1 exon 58093683 58093754 58093683 ID=Msa0031360-mRNA-1:exon:17691;Parent=Msa0031360-mRNA-1
chr1_1 exon 58094165 58094512 58094165 ID=Msa0031360-mRNA-1:exon:17692;Parent=Msa0031360-mRNA-1
chr1_1 five_prime_UTR 58083601 58084083 58083601 ID=Msa0031360-mRNA-1:five_prime_utr;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58084084 58084286 58084084 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58085860 58085989 58085860 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58086116 58086363 58086116 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58086902 58087129 58086902 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58088959 58089121 58088959 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58089194 58089267 58089194 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58090149 58090242 58090149 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58090650 58090725 58090650 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58093683 58093754 58093683 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 CDS 58094165 58094316 58094165 ID=Msa0031360-mRNA-1:cds;Parent=Msa0031360-mRNA-1
chr1_1 three_prime_UTR 58094317 58094512 58094317 ID=Msa0031360-mRNA-1:three_prime_utr;Parent=Msa0031360-mRNA-1
Gene Sequence

>Msa0031360

ATGATGGATCTGAGATATTTATTATTGATTATACTAGCTTTGGAAATTTTGTGTGTTGCGAATGGAGATAATTTGGTGTTTCAGGTGCAGCGTCGGAAAACGAGTTTAAGTGGAATTAAACATCACGATCATCTTCGTCGTGGTAGATTTCTTTCATCCGTTGATTTCAATCTTGGTGGTAATGGTCTTCCTACTAGAACTGGGTTGTATTTCACTAAACTTGGGCTTGGCTCTCCAAAGAAGGACTACTATGTCCAAGTTGATACAGGAAGTGATATTCTGTGGGTGAATTGTGTTGAGTGCTCAAGATGTCCTACGAAAAGCCAAATCGGTATGGACTTGACTCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGATCATGAGTTTTGCTCTTCCACATATGATGGTCCGATTCCTGGTTGTAAGGCGGAAACACCCTGCCCCTATAGCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTCAGGGACTATCTTACTTTTGACCGGATCAACGGAAATCTCCATACCGCACCGCAAAATAGCAGCATCATTTTTGGGTGTGGCGCTGTACAATCTGGTACATTGGGTGCATCTTCCGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAGGAAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTCGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGAACAACTCCACTGGTACCAAATATGGCACATTACAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCGGATATATTTGATTCTGGAAATGGGAAGGGGACAGTGATTGATAGTGGAACAACCTTGGCTTATCTTCCTGTCATAGTTTATGACCAACTAATTCCAAAGATTTTTGCCCGTCAGCCTGAATTGAAATTAGCTCGCATTGAGGAACAATTTAAATGTTTTCCCTATGCTGGAAATGTTGATGGTGGATTTCCAGTTGTCAAACTACATTTTGAGGGTTCTCTCTCTCTGACAGTTTATCCTCATGACTATCTGTTCCAATATAAGGTGGCTGGTGTCCGATGTATTGGCTGGCAGAAAAGTGTGACCCAAACTAAGGATGGAAAGGACATGACACTTCTTGGAGATTTGGTGCTTTCAAACAAACTTGTCTTGTACGATCTTGAGAATATGGCTATTGGATGGACTGAATACAATTGCTCTTCCAGCATTAAAGTGAAGGATGCAACGACTGGAATAGTACATACAGTGGGCGCACACAATATTTCTTCAGCTTCTACCTTTTTAATTGGTAGAATATTGTCATTCTTTTTGTTGCTAATTGCCATGTTAAACTATTTTTATAACTAG
Protein sequence

>Msa0031360

MMDLRYLLLIILALEILCVANGDNLVFQVQRRKTSLSGIKHHDHLRRGRFLSSVDFNLGGNGLPTRTGLYFTKLGLGSPKKDYYVQVDTGSDILWVNCVECSRCPTKSQIGMDLTLYDPKGSHTSELISCDHEFCSSTYDGPIPGCKAETPCPYSITYGDGSATTGYYVRDYLTFDRINGNLHTAPQNSSIIFGCGAVQSGTLGASSEEALDGIIGFGQENSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVRTTPLVPNMAHYNVVLKNIEVDGDVLQLPSDIFDSGNGKGTVIDSGTTLAYLPVIVYDQLIPKIFARQPELKLARIEEQFKCFPYAGNVDGGFPVVKLHFEGSLSLTVYPHDYLFQYKVAGVRCIGWQKSVTQTKDGKDMTLLGDLVLSNKLVLYDLENMAIGWTEYNCSSSIKVKDATTGIVHTVGAHNISSASTFLIGRILSFFLLLIAMLNYFYN*