Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242270 | PNX96935.1 | 92.063 | 63 | 5 | 0 | 10 | 72 | 352 | 414 | 5.16e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242270 | A0A2K3N1K7 | 92.063 | 63 | 5 | 0 | 10 | 72 | 352 | 414 | 2.46e-32 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0242270 | 0.800376 | 1.483511e-48 | -8.615850e-47 |
| Msa0031360 | Msa0242270 | 0.806464 | 8.122419e-50 | -8.615850e-47 |
| Msa0054260 | Msa0242270 | 0.807362 | 5.246112e-50 | -8.615850e-47 |
| Msa0078660 | Msa0242270 | 0.800171 | 1.633028e-48 | -8.615850e-47 |
| Msa0085360 | Msa0242270 | -0.833510 | 5.115498e-56 | -8.615850e-47 |
| Msa0100090 | Msa0242270 | 0.813558 | 2.408726e-51 | -8.615850e-47 |
| Msa0116770 | Msa0242270 | 0.815710 | 8.040358e-52 | -8.615850e-47 |
| Msa0118400 | Msa0242270 | 0.841607 | 4.287966e-58 | -8.615850e-47 |
| Msa0135380 | Msa0242270 | 0.803876 | 2.827603e-49 | -8.615850e-47 |
| Msa0165210 | Msa0242270 | 0.812191 | 4.800037e-51 | -8.615850e-47 |
| Msa0165220 | Msa0242270 | 0.820267 | 7.508081e-53 | -8.615850e-47 |
| Msa0171300 | Msa0242270 | 0.812728 | 3.662625e-51 | -8.615850e-47 |
| Msa0173990 | Msa0242270 | 0.821597 | 3.710345e-53 | -8.615850e-47 |
| Msa0177700 | Msa0242270 | -0.815604 | 8.490326e-52 | -8.615850e-47 |
| Msa0197660 | Msa0242270 | 0.846860 | 1.665486e-59 | -8.615850e-47 |
| Msa0235590 | Msa0242270 | 0.820431 | 6.882823e-53 | -8.615850e-47 |
| Msa0239800 | Msa0242270 | 0.854041 | 1.602875e-61 | -8.615850e-47 |
| Msa0241640 | Msa0242270 | 0.808862 | 2.513955e-50 | -8.615850e-47 |
| Msa0242270 | Msa0277820 | 0.819227 | 1.297358e-52 | -8.615850e-47 |
| Msa0242270 | Msa0279790 | 0.821151 | 4.701741e-53 | -8.615850e-47 |
| Msa0242270 | Msa0280490 | 0.829643 | 4.590209e-55 | -8.615850e-47 |
| Msa0242270 | Msa0313920 | 0.805963 | 1.035552e-49 | -8.615850e-47 |
| Msa0242270 | Msa0317510 | 0.855384 | 6.540517e-62 | -8.615850e-47 |
| Msa0242270 | Msa0322830 | 0.804246 | 2.368212e-49 | -8.615850e-47 |
| Msa0242270 | Msa0333720 | -0.803704 | 3.070059e-49 | -8.615850e-47 |
| Msa0242270 | Msa0350990 | 0.812617 | 3.874562e-51 | -8.615850e-47 |
| Msa0242270 | Msa0351030 | 0.811237 | 7.741754e-51 | -8.615850e-47 |
| Msa0242270 | Msa0362780 | 0.810052 | 1.396376e-50 | -8.615850e-47 |
| Msa0242270 | Msa0380040 | 0.810986 | 8.775307e-51 | -8.615850e-47 |
| Msa0242270 | Msa0419820 | 0.821703 | 3.507257e-53 | -8.615850e-47 |
| Msa0242270 | Msa0429290 | 0.810329 | 1.217057e-50 | -8.615850e-47 |
| Msa0242270 | Msa0436500 | 0.812656 | 3.797964e-51 | -8.615850e-47 |
| Msa0242270 | Msa0473240 | 0.810066 | 1.386763e-50 | -8.615850e-47 |
| Msa0242270 | Msa0475580 | 0.812331 | 4.474489e-51 | -8.615850e-47 |
| Msa0242270 | Msa0480320 | 0.812126 | 4.958728e-51 | -8.615850e-47 |
| Msa0242270 | Msa0519220 | 0.814098 | 1.831739e-51 | -8.615850e-47 |
| Msa0242270 | Msa0562440 | 0.806172 | 9.360511e-50 | -8.615850e-47 |
| Msa0242270 | Msa0579290 | 0.802210 | 6.249364e-49 | -8.615850e-47 |
| Msa0242270 | Msa0579390 | 0.800955 | 1.130332e-48 | -8.615850e-47 |
| Msa0242270 | Msa0584130 | 0.823492 | 1.345541e-53 | -8.615850e-47 |
| Msa0242270 | Msa0607200 | 0.804706 | 1.899165e-49 | -8.615850e-47 |
| Msa0242270 | Msa0610370 | 0.800023 | 1.750679e-48 | -8.615850e-47 |
| Msa0242270 | Msa0623080 | 0.824452 | 8.008584e-54 | -8.615850e-47 |
| Msa0242270 | Msa0638280 | 0.824791 | 6.665605e-54 | -8.615850e-47 |
| Msa0242270 | Msa0638320 | 0.819357 | 1.212039e-52 | -8.615850e-47 |
| Msa0242270 | Msa0677270 | 0.815107 | 1.095308e-51 | -8.615850e-47 |
| Msa0242270 | Msa0734660 | 0.815090 | 1.104521e-51 | -8.615850e-47 |
| Msa0242270 | Msa0813670 | 0.809497 | 1.837660e-50 | -8.615850e-47 |
| Msa0242270 | Msa0843640 | 0.809401 | 1.927358e-50 | -8.615850e-47 |
| Msa0242270 | Msa0870620 | 0.803119 | 4.058592e-49 | -8.615850e-47 |
| Msa0242270 | Msa0895790 | 0.808570 | 2.901852e-50 | -8.615850e-47 |
| Msa0242270 | Msa0909000 | -0.835783 | 1.372637e-56 | -8.615850e-47 |
| Msa0242270 | Msa0937240 | 0.817940 | 2.540443e-52 | -8.615850e-47 |
| Msa0242270 | Msa0941710 | 0.805338 | 1.400700e-49 | -8.615850e-47 |
| Msa0242270 | Msa0941730 | 0.814093 | 1.836143e-51 | -8.615850e-47 |
| Msa0242270 | Msa0941750 | 0.816559 | 5.194901e-52 | -8.615850e-47 |
| Msa0242270 | Msa0980090 | 0.818385 | 2.015552e-52 | -8.615850e-47 |
| Msa0242270 | Msa1026790 | 0.802730 | 4.884083e-49 | -8.615850e-47 |
| Msa0242270 | Msa1027290 | 0.812131 | 4.946931e-51 | -8.615850e-47 |
| Msa0242270 | Msa1046300 | 0.810089 | 1.370787e-50 | -8.615850e-47 |
| Msa0242270 | Msa1085920 | 0.801189 | 1.012727e-48 | -8.615850e-47 |
| Msa0242270 | Msa1181550 | 0.823703 | 1.200859e-53 | -8.615850e-47 |
| Msa0242270 | Msa1233500 | 0.801949 | 7.071649e-49 | -8.615850e-47 |
| Msa0242270 | Msa1244250 | 0.802570 | 5.268207e-49 | -8.615850e-47 |
| Msa0242270 | Msa1308580 | 0.818679 | 1.727974e-52 | -8.615850e-47 |
| Msa0242270 | Msa1308620 | 0.839909 | 1.195264e-57 | -8.615850e-47 |
| Msa0242270 | Msa1348950 | 0.814048 | 1.878907e-51 | -8.615850e-47 |
| Msa0242270 | Msa1362880 | 0.811644 | 6.316205e-51 | -8.615850e-47 |
| Msa0242270 | Msa1423990 | 0.811596 | 6.469506e-51 | -8.615850e-47 |
| Msa0242270 | Msa1455490 | 0.811866 | 5.649185e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0242270 | MtrunA17_Chr2g0294391 | 95.714 | 70 | 3 | 0 | 3 | 72 | 352 | 421 | 3.50e-27 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCTGAGCATCTCTTAT+TGG | 0.255116 | 2_2:-18371547 | Msa0242270:CDS |
| AGCATCTCTTATTGGCTCTA+AGG | 0.283609 | 2_2:-18371539 | Msa0242270:CDS |
| TCTAAGGGAAGCACTTCCTT+TGG | 0.376938 | 2_2:-18371523 | Msa0242270:CDS |
| TTAATTAGCGGCATAGCTTA+TGG | 0.378193 | 2_2:-18371816 | Msa0242270:CDS |
| TGCATGCATGTTCAGATTGT+TGG | 0.410316 | 2_2:-18371624 | Msa0242270:intron |
| TGAAGCAGCTCCACCATGTT+GGG | 0.410865 | 2_2:+18371578 | None:intergenic |
| TTGTTTGTTTCCAGAATACT+TGG | 0.412856 | 2_2:-18371883 | Msa0242270:intron |
| AGGGAAGCACTTCCTTTGGT+TGG | 0.480501 | 2_2:-18371519 | Msa0242270:CDS |
| AGAGCCAATAAGAGATGCTC+AGG | 0.491628 | 2_2:+18371543 | None:intergenic |
| CCATCATGTGCGTTAATTAG+CGG | 0.492981 | 2_2:-18371828 | Msa0242270:CDS |
| CCGCTAATTAACGCACATGA+TGG | 0.532055 | 2_2:+18371828 | None:intergenic |
| GCATCTCTTATTGGCTCTAA+GGG | 0.555107 | 2_2:-18371538 | Msa0242270:CDS |
| TTGAAGCAGCTCCACCATGT+TGG | 0.555464 | 2_2:+18371577 | None:intergenic |
| TCCACCATGTTGGGATTGCA+TGG | 0.562511 | 2_2:+18371587 | None:intergenic |
| TTATGGTGGCTACGCGCGAA+AGG | 0.564513 | 2_2:-18371799 | Msa0242270:intron |
| TAGAAACATCAACTTATGGC+AGG | 0.574581 | 2_2:-18372624 | None:intergenic |
| CATTTAACAGGTCCAACCAA+AGG | 0.645583 | 2_2:+18371507 | None:intergenic |
| AGATCCATGCAATCCCAACA+TGG | 0.647702 | 2_2:-18371591 | Msa0242270:CDS |
| ATTAGCGGCATAGCTTATGG+TGG | 0.665988 | 2_2:-18371813 | Msa0242270:CDS |
| TCCATGCAATCCCAACATGG+TGG | 0.701127 | 2_2:-18371588 | Msa0242270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACATGGAATAGAATT+TGG | + | chr2_2:18371577-18371596 | None:intergenic | 20.0% |
| !! | ATGTATAAACTAAAGTTAGA+CGG | - | chr2_2:18371617-18371636 | Msa0242270:intron | 20.0% |
| !! | AATAAACATGGAATAGAATT+TGG | + | chr2_2:18371577-18371596 | None:intergenic | 20.0% |
| !! | ATGTATAAACTAAAGTTAGA+CGG | - | chr2_2:18371617-18371636 | Msa0242270:intron | 20.0% |
| !!! | TGGGTTTGTTAAAATAAACA+TGG | + | chr2_2:18371589-18371608 | None:intergenic | 25.0% |
| !! | GTCTAACTTTAGTTTATACA+TGG | + | chr2_2:18371618-18371637 | None:intergenic | 25.0% |
| !!! | GGAAAAGATTTTAATGAGAT+AGG | - | chr2_2:18371857-18371876 | Msa0242270:CDS | 25.0% |
| ! | GACATGATATGAATCTAAAA+TGG | - | chr2_2:18371944-18371963 | Msa0242270:intron | 25.0% |
| ! | ATTGAAGGATTGAAAAAAGA+AGG | - | chr2_2:18372110-18372129 | Msa0242270:intron | 25.0% |
| ! | TCAGACATACATAAATAGTT+GGG | + | chr2_2:18372354-18372373 | None:intergenic | 25.0% |
| ! | ATCAGACATACATAAATAGT+TGG | + | chr2_2:18372355-18372374 | None:intergenic | 25.0% |
| ! | TTATCTGACTACAGAAAATT+TGG | + | chr2_2:18372404-18372423 | None:intergenic | 25.0% |
| !!! | TGGGTTTGTTAAAATAAACA+TGG | + | chr2_2:18371589-18371608 | None:intergenic | 25.0% |
| !! | GTCTAACTTTAGTTTATACA+TGG | + | chr2_2:18371618-18371637 | None:intergenic | 25.0% |
| !!! | GGAAAAGATTTTAATGAGAT+AGG | - | chr2_2:18371857-18371876 | Msa0242270:CDS | 25.0% |
| ! | GACATGATATGAATCTAAAA+TGG | - | chr2_2:18371944-18371963 | Msa0242270:intron | 25.0% |
| ! | ATTGAAGGATTGAAAAAAGA+AGG | - | chr2_2:18372110-18372129 | Msa0242270:intron | 25.0% |
| ! | TCAGACATACATAAATAGTT+GGG | + | chr2_2:18372354-18372373 | None:intergenic | 25.0% |
| ! | ATCAGACATACATAAATAGT+TGG | + | chr2_2:18372355-18372374 | None:intergenic | 25.0% |
| ! | TTATCTGACTACAGAAAATT+TGG | + | chr2_2:18372404-18372423 | None:intergenic | 25.0% |
| AGTTTATACATGGCAAAGAT+GGG | + | chr2_2:18371608-18371627 | None:intergenic | 30.0% | |
| TAGTTTATACATGGCAAAGA+TGG | + | chr2_2:18371609-18371628 | None:intergenic | 30.0% | |
| !! | AATAGCCTTTGTTGTTCAAT+TGG | - | chr2_2:18371685-18371704 | Msa0242270:intron | 30.0% |
| TTTAGCCAATTGAACAACAA+AGG | + | chr2_2:18371693-18371712 | None:intergenic | 30.0% | |
| GATAGGATATGGATATGATA+AGG | - | chr2_2:18371806-18371825 | Msa0242270:CDS | 30.0% | |
| !! | AAGATTTTAATGAGATAGGC+AGG | - | chr2_2:18371861-18371880 | Msa0242270:CDS | 30.0% |
| GTCAAGTTATCATATCATGA+TGG | - | chr2_2:18371901-18371920 | Msa0242270:intron | 30.0% | |
| ATGATATGTATAAACCCTGA+AGG | + | chr2_2:18372017-18372036 | None:intergenic | 30.0% | |
| AATGTTTCATTCCCTTAACA+TGG | - | chr2_2:18372046-18372065 | Msa0242270:intron | 30.0% | |
| TTGTTTGTTTCCAGAATACT+TGG | - | chr2_2:18372241-18372260 | Msa0242270:intron | 30.0% | |
| ! | TTTTCATGATCCAAGTATTC+TGG | + | chr2_2:18372254-18372273 | None:intergenic | 30.0% |
| AGTTTATACATGGCAAAGAT+GGG | + | chr2_2:18371608-18371627 | None:intergenic | 30.0% | |
| TAGTTTATACATGGCAAAGA+TGG | + | chr2_2:18371609-18371628 | None:intergenic | 30.0% | |
| !! | AATAGCCTTTGTTGTTCAAT+TGG | - | chr2_2:18371685-18371704 | Msa0242270:intron | 30.0% |
| TTTAGCCAATTGAACAACAA+AGG | + | chr2_2:18371693-18371712 | None:intergenic | 30.0% | |
| GATAGGATATGGATATGATA+AGG | - | chr2_2:18371806-18371825 | Msa0242270:CDS | 30.0% | |
| !! | AAGATTTTAATGAGATAGGC+AGG | - | chr2_2:18371861-18371880 | Msa0242270:CDS | 30.0% |
| GTCAAGTTATCATATCATGA+TGG | - | chr2_2:18371901-18371920 | Msa0242270:intron | 30.0% | |
| ATGATATGTATAAACCCTGA+AGG | + | chr2_2:18372017-18372036 | None:intergenic | 30.0% | |
| AATGTTTCATTCCCTTAACA+TGG | - | chr2_2:18372046-18372065 | Msa0242270:intron | 30.0% | |
| TTGTTTGTTTCCAGAATACT+TGG | - | chr2_2:18372241-18372260 | Msa0242270:intron | 30.0% | |
| ! | TTTTCATGATCCAAGTATTC+TGG | + | chr2_2:18372254-18372273 | None:intergenic | 30.0% |
| TTGAATTGTGAATACGAACC+AGG | + | chr2_2:18371731-18371750 | None:intergenic | 35.0% | |
| TCTCTATCATGACCATCAAA+CGG | + | chr2_2:18371784-18371803 | None:intergenic | 35.0% | |
| ! | TTTGATGGTCATGATAGAGA+CGG | - | chr2_2:18371784-18371803 | Msa0242270:intron | 35.0% |
| ! | ATAAGGTCTTATCCTCATGT+TGG | - | chr2_2:18371823-18371842 | Msa0242270:CDS | 35.0% |
| ACTAATGCTCACACAATTGA+AGG | - | chr2_2:18372095-18372114 | Msa0242270:intron | 35.0% | |
| TTAATTAGCGGCATAGCTTA+TGG | - | chr2_2:18372308-18372327 | Msa0242270:intron | 35.0% | |
| CTCACATTATGTGATGACAT+TGG | - | chr2_2:18372450-18372469 | Msa0242270:intron | 35.0% | |
| TTGAATTGTGAATACGAACC+AGG | + | chr2_2:18371731-18371750 | None:intergenic | 35.0% | |
| TCTCTATCATGACCATCAAA+CGG | + | chr2_2:18371784-18371803 | None:intergenic | 35.0% | |
| ! | TTTGATGGTCATGATAGAGA+CGG | - | chr2_2:18371784-18371803 | Msa0242270:intron | 35.0% |
| ! | ATAAGGTCTTATCCTCATGT+TGG | - | chr2_2:18371823-18371842 | Msa0242270:CDS | 35.0% |
| ACTAATGCTCACACAATTGA+AGG | - | chr2_2:18372095-18372114 | Msa0242270:intron | 35.0% | |
| TTAATTAGCGGCATAGCTTA+TGG | - | chr2_2:18372308-18372327 | Msa0242270:intron | 35.0% | |
| CTCACATTATGTGATGACAT+TGG | - | chr2_2:18372450-18372469 | Msa0242270:intron | 35.0% | |
| AATTGTGAATACGAACCAGG+CGG | + | chr2_2:18371728-18371747 | None:intergenic | 40.0% | |
| ! | AGTCCTTTGAAAACCTTCAC+AGG | - | chr2_2:18371756-18371775 | Msa0242270:intron | 40.0% |
| CTCTATCATGACCATCAAAC+GGG | + | chr2_2:18371783-18371802 | None:intergenic | 40.0% | |
| TGATAGAGACGGATAGGATA+TGG | - | chr2_2:18371795-18371814 | Msa0242270:intron | 40.0% | |
| !! | CCTCATGTTGGTTTCTTACT+CGG | - | chr2_2:18371835-18371854 | Msa0242270:CDS | 40.0% |
| !! | CTCATGTTGGTTTCTTACTC+GGG | - | chr2_2:18371836-18371855 | Msa0242270:CDS | 40.0% |
| CAGGATAAGAGAGACATGAT+AGG | + | chr2_2:18371981-18372000 | None:intergenic | 40.0% | |
| TTTCATTCCCTTAACATGGC+AGG | - | chr2_2:18372050-18372069 | Msa0242270:intron | 40.0% | |
| AAGAAAGCCTGCCATGTTAA+GGG | + | chr2_2:18372060-18372079 | None:intergenic | 40.0% | |
| GTTTAAGTAATGCTGTCACG+TGG | - | chr2_2:18372150-18372169 | Msa0242270:intron | 40.0% | |
| CCATCATGTGCGTTAATTAG+CGG | - | chr2_2:18372296-18372315 | Msa0242270:intron | 40.0% | |
| TGCATGCATGTTCAGATTGT+TGG | - | chr2_2:18372500-18372519 | Msa0242270:intron | 40.0% | |
| TCATCCTGAGCATCTCTTAT+TGG | - | chr2_2:18372577-18372596 | Msa0242270:intron | 40.0% | |
| !! | AGCATCTCTTATTGGCTCTA+AGG | - | chr2_2:18372585-18372604 | Msa0242270:intron | 40.0% |
| !! | GCATCTCTTATTGGCTCTAA+GGG | - | chr2_2:18372586-18372605 | Msa0242270:intron | 40.0% |
| AATTGTGAATACGAACCAGG+CGG | + | chr2_2:18371728-18371747 | None:intergenic | 40.0% | |
| ! | AGTCCTTTGAAAACCTTCAC+AGG | - | chr2_2:18371756-18371775 | Msa0242270:intron | 40.0% |
| CTCTATCATGACCATCAAAC+GGG | + | chr2_2:18371783-18371802 | None:intergenic | 40.0% | |
| TGATAGAGACGGATAGGATA+TGG | - | chr2_2:18371795-18371814 | Msa0242270:intron | 40.0% | |
| !! | CCTCATGTTGGTTTCTTACT+CGG | - | chr2_2:18371835-18371854 | Msa0242270:CDS | 40.0% |
| !! | CTCATGTTGGTTTCTTACTC+GGG | - | chr2_2:18371836-18371855 | Msa0242270:CDS | 40.0% |
| CAGGATAAGAGAGACATGAT+AGG | + | chr2_2:18371981-18372000 | None:intergenic | 40.0% | |
| TTTCATTCCCTTAACATGGC+AGG | - | chr2_2:18372050-18372069 | Msa0242270:intron | 40.0% | |
| AAGAAAGCCTGCCATGTTAA+GGG | + | chr2_2:18372060-18372079 | None:intergenic | 40.0% | |
| GTTTAAGTAATGCTGTCACG+TGG | - | chr2_2:18372150-18372169 | Msa0242270:intron | 40.0% | |
| CCATCATGTGCGTTAATTAG+CGG | - | chr2_2:18372296-18372315 | Msa0242270:intron | 40.0% | |
| TGCATGCATGTTCAGATTGT+TGG | - | chr2_2:18372500-18372519 | Msa0242270:intron | 40.0% | |
| TCATCCTGAGCATCTCTTAT+TGG | - | chr2_2:18372577-18372596 | Msa0242270:intron | 40.0% | |
| !! | AGCATCTCTTATTGGCTCTA+AGG | - | chr2_2:18372585-18372604 | Msa0242270:intron | 40.0% |
| !! | GCATCTCTTATTGGCTCTAA+GGG | - | chr2_2:18372586-18372605 | Msa0242270:intron | 40.0% |
| TGTCCGATGAGTGGAGATAT+TGG | - | chr2_2:18371641-18371660 | Msa0242270:intron | 45.0% | |
| GTCCGATGAGTGGAGATATT+GGG | - | chr2_2:18371642-18371661 | Msa0242270:intron | 45.0% | |
| CTCCCAATATCTCCACTCAT+CGG | + | chr2_2:18371647-18371666 | None:intergenic | 45.0% | |
| ATGAGTGGAGATATTGGGAG+AGG | - | chr2_2:18371647-18371666 | Msa0242270:intron | 45.0% | |
| TATTGGGAGAGGAGCAACTA+AGG | - | chr2_2:18371658-18371677 | Msa0242270:intron | 45.0% | |
| AAAGCAAAAGATAGACCGCC+TGG | - | chr2_2:18371710-18371729 | Msa0242270:intron | 45.0% | |
| ! | GGTCCTGTGAAGGTTTTCAA+AGG | + | chr2_2:18371762-18371781 | None:intergenic | 45.0% |
| TGGTCATGATAGAGACGGAT+AGG | - | chr2_2:18371789-18371808 | Msa0242270:intron | 45.0% | |
| CCGAGTAAGAAACCAACATG+AGG | + | chr2_2:18371838-18371857 | None:intergenic | 45.0% | |
| GCAGGATATGATATGCGACA+TGG | - | chr2_2:18371879-18371898 | Msa0242270:intron | 45.0% | |
| TCTTATCCTGACCATCGAAC+AGG | - | chr2_2:18371991-18372010 | Msa0242270:intron | 45.0% | |
| GAAGAAAGCCTGCCATGTTA+AGG | + | chr2_2:18372061-18372080 | None:intergenic | 45.0% | |
| CCGCTAATTAACGCACATGA+TGG | + | chr2_2:18372299-18372318 | None:intergenic | 45.0% | |
| ATTAGCGGCATAGCTTATGG+TGG | - | chr2_2:18372311-18372330 | Msa0242270:intron | 45.0% | |
| AGATCCATGCAATCCCAACA+TGG | - | chr2_2:18372533-18372552 | Msa0242270:intron | 45.0% | |
| AGAGCCAATAAGAGATGCTC+AGG | + | chr2_2:18372584-18372603 | None:intergenic | 45.0% | |
| !! | TCTAAGGGAAGCACTTCCTT+TGG | - | chr2_2:18372601-18372620 | Msa0242270:intron | 45.0% |
| TGTCCGATGAGTGGAGATAT+TGG | - | chr2_2:18371641-18371660 | Msa0242270:intron | 45.0% | |
| GTCCGATGAGTGGAGATATT+GGG | - | chr2_2:18371642-18371661 | Msa0242270:intron | 45.0% | |
| CTCCCAATATCTCCACTCAT+CGG | + | chr2_2:18371647-18371666 | None:intergenic | 45.0% | |
| ATGAGTGGAGATATTGGGAG+AGG | - | chr2_2:18371647-18371666 | Msa0242270:intron | 45.0% | |
| TATTGGGAGAGGAGCAACTA+AGG | - | chr2_2:18371658-18371677 | Msa0242270:intron | 45.0% | |
| AAAGCAAAAGATAGACCGCC+TGG | - | chr2_2:18371710-18371729 | Msa0242270:intron | 45.0% | |
| ! | GGTCCTGTGAAGGTTTTCAA+AGG | + | chr2_2:18371762-18371781 | None:intergenic | 45.0% |
| TGGTCATGATAGAGACGGAT+AGG | - | chr2_2:18371789-18371808 | Msa0242270:intron | 45.0% | |
| CCGAGTAAGAAACCAACATG+AGG | + | chr2_2:18371838-18371857 | None:intergenic | 45.0% | |
| GCAGGATATGATATGCGACA+TGG | - | chr2_2:18371879-18371898 | Msa0242270:intron | 45.0% | |
| TCTTATCCTGACCATCGAAC+AGG | - | chr2_2:18371991-18372010 | Msa0242270:intron | 45.0% | |
| GAAGAAAGCCTGCCATGTTA+AGG | + | chr2_2:18372061-18372080 | None:intergenic | 45.0% | |
| CCGCTAATTAACGCACATGA+TGG | + | chr2_2:18372299-18372318 | None:intergenic | 45.0% | |
| ATTAGCGGCATAGCTTATGG+TGG | - | chr2_2:18372311-18372330 | Msa0242270:intron | 45.0% | |
| AGATCCATGCAATCCCAACA+TGG | - | chr2_2:18372533-18372552 | Msa0242270:intron | 45.0% | |
| AGAGCCAATAAGAGATGCTC+AGG | + | chr2_2:18372584-18372603 | None:intergenic | 45.0% | |
| !! | TCTAAGGGAAGCACTTCCTT+TGG | - | chr2_2:18372601-18372620 | Msa0242270:intron | 45.0% |
| GCAGGCTTTCTTCAACTAGC+TGG | - | chr2_2:18372068-18372087 | Msa0242270:intron | 50.0% | |
| GGCTTTCTTCAACTAGCTGG+TGG | - | chr2_2:18372071-18372090 | Msa0242270:intron | 50.0% | |
| TCCATGCAATCCCAACATGG+TGG | - | chr2_2:18372536-18372555 | Msa0242270:intron | 50.0% | |
| TCCACCATGTTGGGATTGCA+TGG | + | chr2_2:18372540-18372559 | None:intergenic | 50.0% | |
| TGAAGCAGCTCCACCATGTT+GGG | + | chr2_2:18372549-18372568 | None:intergenic | 50.0% | |
| TTGAAGCAGCTCCACCATGT+TGG | + | chr2_2:18372550-18372569 | None:intergenic | 50.0% | |
| !! | AGGGAAGCACTTCCTTTGGT+TGG | - | chr2_2:18372605-18372624 | Msa0242270:intron | 50.0% |
| AGAAATGCCACACCTGCCAT+AGG | + | chr2_2:18371515-18371534 | None:intergenic | 50.0% | |
| GCAGGCTTTCTTCAACTAGC+TGG | - | chr2_2:18372068-18372087 | Msa0242270:intron | 50.0% | |
| GGCTTTCTTCAACTAGCTGG+TGG | - | chr2_2:18372071-18372090 | Msa0242270:intron | 50.0% | |
| TCCATGCAATCCCAACATGG+TGG | - | chr2_2:18372536-18372555 | Msa0242270:intron | 50.0% | |
| TCCACCATGTTGGGATTGCA+TGG | + | chr2_2:18372540-18372559 | None:intergenic | 50.0% | |
| TGAAGCAGCTCCACCATGTT+GGG | + | chr2_2:18372549-18372568 | None:intergenic | 50.0% | |
| TTGAAGCAGCTCCACCATGT+TGG | + | chr2_2:18372550-18372569 | None:intergenic | 50.0% | |
| !! | AGGGAAGCACTTCCTTTGGT+TGG | - | chr2_2:18372605-18372624 | Msa0242270:intron | 50.0% |
| TTAGACGGCTGTCCGATGAG+TGG | - | chr2_2:18371632-18371651 | Msa0242270:intron | 55.0% | |
| CCATCAAACGGGTCCTGTGA+AGG | + | chr2_2:18371772-18371791 | None:intergenic | 55.0% | |
| CCTTCACAGGACCCGTTTGA+TGG | - | chr2_2:18371769-18371788 | Msa0242270:intron | 55.0% | |
| TGAAGGCCTGTTCGATGGTC+AGG | + | chr2_2:18372000-18372019 | None:intergenic | 55.0% | |
| TGACCATCGAACAGGCCTTC+AGG | - | chr2_2:18371999-18372018 | Msa0242270:intron | 55.0% | |
| GACCATCGAACAGGCCTTCA+GGG | - | chr2_2:18372000-18372019 | Msa0242270:intron | 55.0% | |
| AACCCTGAAGGCCTGTTCGA+TGG | + | chr2_2:18372005-18372024 | None:intergenic | 55.0% | |
| TTATGGTGGCTACGCGCGAA+AGG | - | chr2_2:18372325-18372344 | Msa0242270:intron | 55.0% | |
| TTAGACGGCTGTCCGATGAG+TGG | - | chr2_2:18371632-18371651 | Msa0242270:intron | 55.0% | |
| CCATCAAACGGGTCCTGTGA+AGG | + | chr2_2:18371772-18371791 | None:intergenic | 55.0% | |
| CCTTCACAGGACCCGTTTGA+TGG | - | chr2_2:18371769-18371788 | Msa0242270:intron | 55.0% | |
| TGAAGGCCTGTTCGATGGTC+AGG | + | chr2_2:18372000-18372019 | None:intergenic | 55.0% | |
| TGACCATCGAACAGGCCTTC+AGG | - | chr2_2:18371999-18372018 | Msa0242270:intron | 55.0% | |
| GACCATCGAACAGGCCTTCA+GGG | - | chr2_2:18372000-18372019 | Msa0242270:intron | 55.0% | |
| AACCCTGAAGGCCTGTTCGA+TGG | + | chr2_2:18372005-18372024 | None:intergenic | 55.0% | |
| TTATGGTGGCTACGCGCGAA+AGG | - | chr2_2:18372325-18372344 | Msa0242270:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 18371515 | 18372631 | 18371515 | ID=Msa0242270;Name=Msa0242270 |
| chr2_2 | mRNA | 18371515 | 18372631 | 18371515 | ID=Msa0242270-mRNA-1;Parent=Msa0242270;Name=Msa0242270-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|1|1|0.66|3|0|72 |
| chr2_2 | exon | 18372625 | 18372631 | 18372625 | ID=Msa0242270-mRNA-1:exon:7534;Parent=Msa0242270-mRNA-1 |
| chr2_2 | exon | 18371800 | 18371891 | 18371800 | ID=Msa0242270-mRNA-1:exon:7533;Parent=Msa0242270-mRNA-1 |
| chr2_2 | exon | 18371515 | 18371631 | 18371515 | ID=Msa0242270-mRNA-1:exon:7532;Parent=Msa0242270-mRNA-1 |
| chr2_2 | CDS | 18372625 | 18372631 | 18372625 | ID=Msa0242270-mRNA-1:cds;Parent=Msa0242270-mRNA-1 |
| chr2_2 | CDS | 18371800 | 18371891 | 18371800 | ID=Msa0242270-mRNA-1:cds;Parent=Msa0242270-mRNA-1 |
| chr2_2 | CDS | 18371515 | 18371631 | 18371515 | ID=Msa0242270-mRNA-1:cds;Parent=Msa0242270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
