Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107410 | sp|P93324|CHOMT_MEDSA | 43.243 | 370 | 137 | 6 | 18 | 323 | 12 | 372 | 6.50e-99 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107410 | A0A396JUB6 | 78.906 | 384 | 17 | 3 | 4 | 323 | 1 | 384 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107410 | Msa0150620 | 0.810032 | 1.410061e-50 | -8.615850e-47 |
| Msa0107410 | Msa0153860 | 0.864576 | 1.100697e-64 | -8.615850e-47 |
| Msa0107410 | Msa0186240 | 0.802244 | 6.150641e-49 | -8.615850e-47 |
| Msa0107410 | Msa0242720 | 0.817869 | 2.636051e-52 | -8.615850e-47 |
| Msa0107410 | Msa0246140 | 0.815881 | 7.365125e-52 | -8.615850e-47 |
| Msa0107410 | Msa0284730 | 0.804156 | 2.472840e-49 | -8.615850e-47 |
| Msa0107410 | Msa0478080 | 0.809814 | 1.571004e-50 | -8.615850e-47 |
| Msa0107410 | Msa0480530 | 0.813392 | 2.619383e-51 | -8.615850e-47 |
| Msa0107410 | Msa0480540 | 0.829380 | 5.315856e-55 | -8.615850e-47 |
| Msa0107410 | Msa0480550 | 0.815046 | 1.129556e-51 | -8.615850e-47 |
| Msa0107410 | Msa0497860 | 0.808791 | 2.602879e-50 | -8.615850e-47 |
| Msa0107410 | Msa0522140 | 0.800613 | 1.327873e-48 | -8.615850e-47 |
| Msa0107410 | Msa0522170 | 0.805063 | 1.599179e-49 | -8.615850e-47 |
| Msa0107410 | Msa0561110 | 0.814620 | 1.404087e-51 | -8.615850e-47 |
| Msa0107410 | Msa0565180 | 0.814479 | 1.508459e-51 | -8.615850e-47 |
| Msa0107410 | Msa0657340 | 0.816244 | 6.110081e-52 | -8.615850e-47 |
| Msa0107410 | Msa0701430 | 0.800567 | 1.356776e-48 | -8.615850e-47 |
| Msa0107410 | Msa0728230 | 0.814868 | 1.237621e-51 | -8.615850e-47 |
| Msa0107410 | Msa0728570 | 0.808216 | 3.454233e-50 | -8.615850e-47 |
| Msa0107410 | Msa0744540 | 0.815438 | 9.242293e-52 | -8.615850e-47 |
| Msa0107410 | Msa0744550 | 0.827778 | 1.296487e-54 | -8.615850e-47 |
| Msa0107410 | Msa0744560 | 0.815667 | 8.221515e-52 | -8.615850e-47 |
| Msa0107410 | Msa0744710 | 0.829309 | 5.532346e-55 | -8.615850e-47 |
| Msa0107410 | Msa0794200 | 0.804367 | 2.235187e-49 | -8.615850e-47 |
| Msa0107410 | Msa0795320 | 0.832142 | 1.119229e-55 | -8.615850e-47 |
| Msa0107410 | Msa0826240 | 0.834850 | 2.361523e-56 | -8.615850e-47 |
| Msa0107410 | Msa0826370 | 0.800022 | 1.751498e-48 | -8.615850e-47 |
| Msa0107410 | Msa0865810 | 0.812941 | 3.291060e-51 | -8.615850e-47 |
| Msa0107410 | Msa0865820 | 0.816036 | 6.801988e-52 | -8.615850e-47 |
| Msa0107410 | Msa0865830 | 0.805275 | 1.443853e-49 | -8.615850e-47 |
| Msa0107410 | Msa0970410 | 0.823589 | 1.276748e-53 | -8.615850e-47 |
| Msa0107410 | Msa1041250 | 0.808457 | 3.068096e-50 | -8.615850e-47 |
| Msa0107410 | Msa1061840 | 0.807297 | 5.413563e-50 | -8.615850e-47 |
| Msa0107410 | Msa1071350 | 0.829324 | 5.486770e-55 | -8.615850e-47 |
| Msa0107410 | Msa1110900 | 0.812980 | 3.226803e-51 | -8.615850e-47 |
| Msa0107410 | Msa1179340 | 0.805726 | 1.161506e-49 | -8.615850e-47 |
| Msa0107410 | Msa1185270 | 0.804943 | 1.694411e-49 | -8.615850e-47 |
| Msa0107410 | Msa1202110 | 0.836455 | 9.263667e-57 | -8.615850e-47 |
| Msa0107410 | Msa1254870 | 0.830662 | 2.588943e-55 | -8.615850e-47 |
| Msa0107410 | Msa1328430 | 0.830759 | 2.451352e-55 | -8.615850e-47 |
| Msa0107410 | Msa1366480 | 0.800961 | 1.127216e-48 | -8.615850e-47 |
| Msa0107410 | Msa1398120 | 0.837061 | 6.492475e-57 | -8.615850e-47 |
| Msa0107410 | Msa1401110 | 0.800333 | 1.513694e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107410 | MtrunA17_Chr1g0163621 | 78.906 | 384 | 17 | 3 | 4 | 323 | 1 | 384 | 0.0 | 565 |
| Msa0107410 | MtrunA17_Chr1g0163611 | 70.000 | 370 | 46 | 4 | 19 | 323 | 1 | 370 | 0.0 | 506 |
| Msa0107410 | MtrunA17_Chr1g0163601 | 67.838 | 370 | 54 | 4 | 19 | 323 | 1 | 370 | 2.78e-175 | 490 |
| Msa0107410 | MtrunA17_Chr1g0200491 | 42.432 | 370 | 140 | 6 | 18 | 323 | 12 | 372 | 7.16e-99 | 296 |
| Msa0107410 | MtrunA17_Chr7g0218131 | 43.855 | 358 | 136 | 5 | 28 | 323 | 16 | 370 | 3.43e-97 | 291 |
| Msa0107410 | MtrunA17_Chr7g0218261 | 41.972 | 355 | 142 | 4 | 30 | 323 | 17 | 368 | 1.64e-92 | 280 |
| Msa0107410 | MtrunA17_Chr3g0085211 | 44.134 | 358 | 134 | 7 | 29 | 323 | 16 | 370 | 7.92e-91 | 275 |
| Msa0107410 | MtrunA17_Chr2g0307521 | 43.353 | 346 | 132 | 5 | 40 | 323 | 20 | 363 | 3.62e-90 | 273 |
| Msa0107410 | MtrunA17_Chr7g0218181 | 42.297 | 357 | 136 | 7 | 30 | 323 | 18 | 367 | 7.25e-89 | 270 |
| Msa0107410 | MtrunA17_Chr7g0218271 | 42.659 | 361 | 137 | 7 | 30 | 323 | 18 | 375 | 4.45e-88 | 268 |
| Msa0107410 | MtrunA17_Chr7g0218301 | 42.737 | 358 | 136 | 7 | 34 | 323 | 19 | 375 | 9.30e-88 | 268 |
| Msa0107410 | MtrunA17_Chr7g0218211 | 40.169 | 356 | 148 | 5 | 30 | 323 | 17 | 369 | 9.27e-87 | 265 |
| Msa0107410 | MtrunA17_Chr3g0085201 | 41.690 | 355 | 141 | 7 | 32 | 323 | 6 | 357 | 3.23e-82 | 253 |
| Msa0107410 | MtrunA17_Chr3g0128011 | 34.896 | 384 | 182 | 8 | 2 | 323 | 40 | 417 | 4.33e-75 | 236 |
| Msa0107410 | MtrunA17_Chr1g0170931 | 93.103 | 116 | 5 | 1 | 39 | 151 | 5 | 120 | 3.06e-69 | 211 |
| Msa0107410 | MtrunA17_Chr7g0276401 | 37.535 | 357 | 154 | 7 | 31 | 323 | 24 | 375 | 4.69e-68 | 217 |
| Msa0107410 | MtrunA17_Chr5g0448091 | 33.889 | 360 | 166 | 8 | 31 | 323 | 9 | 363 | 1.17e-62 | 203 |
| Msa0107410 | MtrunA17_Chr8g0367491 | 32.951 | 349 | 169 | 5 | 38 | 323 | 30 | 376 | 1.52e-62 | 203 |
| Msa0107410 | MtrunA17_Chr8g0367441 | 34.473 | 351 | 165 | 5 | 36 | 323 | 29 | 377 | 3.77e-62 | 202 |
| Msa0107410 | MtrunA17_Chr8g0367501 | 32.022 | 356 | 179 | 4 | 31 | 323 | 10 | 365 | 6.62e-62 | 202 |
| Msa0107410 | MtrunA17_Chr8g0367451 | 33.048 | 351 | 170 | 5 | 36 | 323 | 28 | 376 | 2.08e-61 | 200 |
| Msa0107410 | MtrunA17_Chr7g0276411 | 33.611 | 360 | 172 | 7 | 29 | 323 | 5 | 362 | 7.25e-61 | 198 |
| Msa0107410 | MtrunA17_Chr8g0367381 | 33.779 | 299 | 152 | 5 | 36 | 289 | 29 | 326 | 9.24e-53 | 176 |
| Msa0107410 | MtrunA17_Chr8g0345851 | 34.397 | 282 | 116 | 6 | 107 | 323 | 13 | 290 | 4.88e-47 | 160 |
| Msa0107410 | MtrunA17_Chr1g0170951 | 93.151 | 73 | 5 | 0 | 233 | 305 | 17 | 89 | 6.86e-44 | 145 |
| Msa0107410 | MtrunA17_Chr3g0130011 | 29.412 | 357 | 180 | 7 | 32 | 323 | 9 | 358 | 1.77e-36 | 134 |
| Msa0107410 | MtrunA17_Chr2g0314271 | 29.248 | 359 | 177 | 7 | 32 | 323 | 6 | 354 | 3.42e-36 | 133 |
| Msa0107410 | MtrunA17_Chr3g0130061 | 29.972 | 357 | 178 | 9 | 32 | 323 | 9 | 358 | 1.22e-35 | 132 |
| Msa0107410 | MtrunA17_Chr4g0022021 | 27.463 | 335 | 165 | 12 | 55 | 322 | 44 | 367 | 2.82e-28 | 112 |
| Msa0107410 | MtrunA17_Chr4g0021981 | 31.336 | 217 | 103 | 8 | 147 | 322 | 156 | 367 | 3.09e-26 | 107 |
| Msa0107410 | MtrunA17_Chr1g0188391 | 27.245 | 323 | 157 | 8 | 55 | 307 | 33 | 347 | 8.80e-26 | 105 |
| Msa0107410 | MtrunA17_Chr4g0046531 | 25.000 | 324 | 164 | 6 | 52 | 307 | 30 | 342 | 7.86e-25 | 105 |
| Msa0107410 | MtrunA17_Chr4g0046531 | 24.169 | 331 | 172 | 6 | 45 | 307 | 385 | 704 | 1.46e-23 | 101 |
| Msa0107410 | MtrunA17_Chr8g0367461 | 41.228 | 114 | 64 | 2 | 211 | 323 | 1 | 112 | 8.13e-25 | 96.7 |
| Msa0107410 | MtrunA17_Chr1g0188371 | 24.534 | 322 | 170 | 7 | 47 | 301 | 25 | 340 | 4.88e-23 | 98.2 |
| Msa0107410 | MtrunA17_Chr5g0432261 | 32.474 | 194 | 106 | 5 | 135 | 322 | 152 | 326 | 5.79e-23 | 97.1 |
| Msa0107410 | MtrunA17_Chr6g0482291 | 32.086 | 187 | 78 | 5 | 175 | 323 | 1 | 176 | 9.05e-23 | 93.2 |
| Msa0107410 | MtrunA17_Chr7g0223231 | 23.765 | 324 | 173 | 6 | 47 | 307 | 24 | 336 | 1.82e-22 | 96.3 |
| Msa0107410 | MtrunA17_Chr5g0432211 | 27.666 | 347 | 181 | 11 | 37 | 322 | 7 | 344 | 1.97e-22 | 95.9 |
| Msa0107410 | MtrunA17_Chr7g0219161 | 29.897 | 194 | 96 | 3 | 154 | 308 | 152 | 344 | 2.25e-22 | 96.3 |
| Msa0107410 | MtrunA17_Chr5g0432251 | 28.910 | 211 | 107 | 5 | 153 | 322 | 150 | 358 | 4.93e-22 | 95.1 |
| Msa0107410 | MtrunA17_Chr7g0219141 | 24.398 | 332 | 179 | 8 | 55 | 322 | 33 | 356 | 8.13e-22 | 94.4 |
| Msa0107410 | MtrunA17_Chr7g0223241 | 24.691 | 324 | 170 | 6 | 47 | 307 | 24 | 336 | 1.90e-21 | 93.2 |
| Msa0107410 | MtrunA17_Chr5g0432301 | 25.833 | 360 | 189 | 12 | 33 | 322 | 8 | 359 | 2.02e-21 | 93.6 |
| Msa0107410 | MtrunA17_Chr5g0432241 | 29.384 | 211 | 106 | 5 | 153 | 322 | 151 | 359 | 2.20e-21 | 93.2 |
| Msa0107410 | MtrunA17_Chr4g0040621 | 26.426 | 333 | 178 | 9 | 40 | 308 | 27 | 356 | 3.12e-21 | 92.8 |
| Msa0107410 | MtrunA17_Chr3g0121301 | 29.843 | 191 | 94 | 4 | 152 | 302 | 152 | 342 | 4.05e-21 | 92.4 |
| Msa0107410 | MtrunA17_Chr4g0046361 | 26.549 | 339 | 167 | 11 | 55 | 322 | 33 | 360 | 1.97e-20 | 90.5 |
| Msa0107410 | MtrunA17_Chr4g0014561 | 25.948 | 343 | 182 | 9 | 47 | 322 | 25 | 362 | 1.45e-19 | 88.2 |
| Msa0107410 | MtrunA17_Chr4g0046341 | 37.815 | 119 | 69 | 2 | 207 | 322 | 247 | 363 | 2.52e-19 | 87.4 |
| Msa0107410 | MtrunA17_Chr7g0219171 | 33.607 | 122 | 75 | 3 | 204 | 322 | 129 | 247 | 3.26e-19 | 85.5 |
| Msa0107410 | MtrunA17_Chr4g0014641 | 25.373 | 335 | 178 | 9 | 55 | 322 | 33 | 362 | 9.66e-19 | 85.9 |
| Msa0107410 | MtrunA17_Chr8g0367411 | 32.520 | 123 | 81 | 1 | 31 | 151 | 3 | 125 | 1.14e-18 | 81.3 |
| Msa0107410 | MtrunA17_Chr4g0014681 | 25.364 | 343 | 184 | 9 | 47 | 322 | 25 | 362 | 2.44e-18 | 84.7 |
| Msa0107410 | MtrunA17_Chr8g0367481 | 36.207 | 116 | 72 | 1 | 36 | 149 | 29 | 144 | 6.22e-18 | 79.3 |
| Msa0107410 | MtrunA17_Chr8g0367391 | 42.574 | 101 | 55 | 2 | 224 | 323 | 36 | 134 | 8.94e-18 | 78.6 |
| Msa0107410 | MtrunA17_Chr6g0476581 | 52.000 | 75 | 34 | 1 | 30 | 104 | 18 | 90 | 9.17e-15 | 69.7 |
| Msa0107410 | MtrunA17_Chr8g0367421 | 37.634 | 93 | 39 | 1 | 152 | 225 | 2 | 94 | 9.56e-15 | 70.1 |
| Msa0107410 | MtrunA17_Chr6g0482281 | 36.441 | 118 | 71 | 2 | 36 | 149 | 33 | 150 | 4.58e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107410 | AT5G54160.1 | 36.467 | 351 | 158 | 6 | 21 | 309 | 2 | 349 | 4.45e-69 | 219 |
| Msa0107410 | AT1G77520.1 | 34.211 | 342 | 154 | 8 | 51 | 323 | 42 | 381 | 7.87e-63 | 204 |
| Msa0107410 | AT1G77530.1 | 34.211 | 342 | 154 | 8 | 51 | 323 | 42 | 381 | 1.90e-55 | 185 |
| Msa0107410 | AT1G63140.4 | 33.426 | 359 | 164 | 9 | 36 | 323 | 47 | 401 | 7.53e-54 | 181 |
| Msa0107410 | AT1G63140.2 | 33.426 | 359 | 164 | 9 | 36 | 323 | 27 | 381 | 9.73e-54 | 181 |
| Msa0107410 | AT1G51990.1 | 31.722 | 331 | 162 | 6 | 36 | 302 | 13 | 343 | 3.59e-53 | 179 |
| Msa0107410 | AT1G51990.2 | 31.420 | 331 | 163 | 6 | 36 | 302 | 13 | 343 | 4.47e-52 | 176 |
| Msa0107410 | AT1G33030.1 | 32.565 | 347 | 163 | 8 | 42 | 323 | 10 | 350 | 1.20e-50 | 172 |
| Msa0107410 | AT1G21130.1 | 33.702 | 362 | 160 | 14 | 19 | 309 | 9 | 361 | 2.37e-44 | 155 |
| Msa0107410 | AT5G53810.1 | 30.904 | 343 | 163 | 10 | 52 | 323 | 39 | 378 | 1.51e-43 | 154 |
| Msa0107410 | AT1G21100.1 | 32.873 | 362 | 163 | 14 | 19 | 309 | 9 | 361 | 7.78e-43 | 152 |
| Msa0107410 | AT1G21110.1 | 32.597 | 362 | 164 | 15 | 19 | 309 | 9 | 361 | 1.28e-41 | 149 |
| Msa0107410 | AT1G76790.1 | 33.623 | 345 | 148 | 12 | 40 | 310 | 17 | 354 | 9.67e-41 | 146 |
| Msa0107410 | AT1G21120.1 | 32.597 | 362 | 164 | 15 | 19 | 309 | 9 | 361 | 1.65e-40 | 145 |
| Msa0107410 | AT1G21120.2 | 31.915 | 376 | 177 | 15 | 5 | 309 | 42 | 409 | 2.33e-40 | 146 |
| Msa0107410 | AT1G62900.1 | 35.122 | 205 | 93 | 4 | 157 | 323 | 3 | 205 | 1.68e-37 | 133 |
| Msa0107410 | AT3G53140.1 | 30.029 | 343 | 166 | 8 | 33 | 306 | 7 | 344 | 1.88e-35 | 132 |
| Msa0107410 | AT5G37170.1 | 32.432 | 296 | 141 | 10 | 76 | 323 | 50 | 334 | 5.09e-35 | 130 |
| Msa0107410 | AT5G37170.2 | 34.171 | 199 | 90 | 4 | 164 | 323 | 38 | 234 | 3.55e-29 | 112 |
| Msa0107410 | AT1G63140.1 | 30.888 | 259 | 108 | 6 | 36 | 225 | 47 | 303 | 1.10e-27 | 110 |
| Msa0107410 | AT1G33030.3 | 30.400 | 250 | 106 | 6 | 42 | 227 | 10 | 255 | 4.33e-26 | 105 |
| Msa0107410 | AT5G37170.3 | 34.043 | 188 | 83 | 4 | 175 | 323 | 1 | 186 | 7.85e-26 | 102 |
| Msa0107410 | AT1G33030.2 | 30.242 | 248 | 105 | 6 | 42 | 225 | 10 | 253 | 5.43e-25 | 101 |
| Msa0107410 | AT4G35150.1 | 29.911 | 224 | 102 | 8 | 138 | 307 | 88 | 310 | 3.68e-24 | 100 |
| Msa0107410 | AT1G77530.2 | 34.426 | 183 | 89 | 5 | 51 | 202 | 42 | 224 | 2.15e-22 | 95.1 |
| Msa0107410 | AT4G35160.1 | 26.840 | 231 | 118 | 7 | 139 | 323 | 156 | 381 | 2.78e-22 | 96.7 |
| Msa0107410 | AT1G63140.3 | 33.500 | 200 | 98 | 5 | 36 | 202 | 47 | 244 | 3.09e-22 | 94.7 |
Find 44 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAATAAACTTTAATATA+TGG | 0.158267 | 1_3:-17749774 | Msa0107410:three_prime_UTR |
| ACTGCAAGCAATATGAAATT+TGG | 0.211032 | 1_3:+17749895 | None:intergenic |
| ATCACCGGCTTATAAATATT+TGG | 0.239790 | 1_3:-17751456 | Msa0107410:CDS |
| ACAATCACCTTTCCATGTTT+TGG | 0.241056 | 1_3:+17750064 | None:intergenic |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.269845 | 1_3:+17752028 | None:intergenic |
| ACATGGAAAGGTGATTGTTT+TGG | 0.270336 | 1_3:-17750059 | Msa0107410:CDS |
| GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1_3:-17751888 | Msa0107410:CDS |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1_3:+17752040 | None:intergenic |
| TTTAGCTTGTATGTCACAAT+TGG | 0.318038 | 1_3:-17750135 | Msa0107410:intron |
| TTGAATAAACTTTAATATAT+GGG | 0.330332 | 1_3:-17749773 | Msa0107410:three_prime_UTR |
| GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1_3:-17751887 | Msa0107410:CDS |
| AGGATTCTTACACTATATAA+AGG | 0.342110 | 1_3:-17751365 | Msa0107410:CDS |
| ATAGCAGCATTTAGTATTGC+AGG | 0.379466 | 1_3:+17752151 | None:intergenic |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1_3:-17752041 | Msa0107410:CDS |
| AACAAAGCAATGGCTCAATC+TGG | 0.399952 | 1_3:-17751404 | Msa0107410:CDS |
| TTGCTTGGGTTTGGGACCTC+AGG | 0.403803 | 1_3:+17750025 | None:intergenic |
| TACACTATATAAAGGATTTG+AGG | 0.415995 | 1_3:-17751357 | Msa0107410:CDS |
| ACAAGTGAGAAGAGAGTAAC+TGG | 0.420394 | 1_3:+17751985 | None:intergenic |
| CTCAGCTATGTCTGGAGTAA+TGG | 0.435264 | 1_3:-17749867 | Msa0107410:CDS |
| TTCTCCAAATATTTATAAGC+CGG | 0.439608 | 1_3:+17751452 | None:intergenic |
| GTTTATGCTCTCTCATCAAT+TGG | 0.442550 | 1_3:-17751926 | Msa0107410:CDS |
| CAAAACTTATGCATGAGCTC+TGG | 0.450322 | 1_3:-17749923 | Msa0107410:CDS |
| TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1_3:-17751899 | Msa0107410:CDS |
| ACACTATATAAAGGATTTGA+GGG | 0.464404 | 1_3:-17751356 | Msa0107410:CDS |
| CTGGTCCATTAGAAATGAAA+AGG | 0.467725 | 1_3:-17751385 | Msa0107410:CDS |
| AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1_3:-17751909 | Msa0107410:CDS |
| CTCACTAACCTTTAGTAAGA+TGG | 0.473210 | 1_3:+17750970 | None:intergenic |
| ACCATCTTCATTGCTACGAA+TGG | 0.491609 | 1_3:+17751961 | None:intergenic |
| AAACTGAGTTTGTTTGGTGT+TGG | 0.509463 | 1_3:+17752243 | None:intergenic |
| AGTGATATCTCAGCTATGTC+TGG | 0.511397 | 1_3:-17749875 | Msa0107410:CDS |
| TTAGCTTGTATGTCACAATT+GGG | 0.515973 | 1_3:-17750134 | Msa0107410:intron |
| TCATAAAGTTCATGGATCAC+CGG | 0.521104 | 1_3:-17751471 | Msa0107410:intron |
| TCCATTCGTAGCAATGAAGA+TGG | 0.521441 | 1_3:-17751962 | Msa0107410:CDS |
| TGGTGATGCCATCTTACTAA+AGG | 0.525689 | 1_3:-17750978 | Msa0107410:intron |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1_3:+17752029 | None:intergenic |
| GCAGGGATAGAGCATGTTGA+AGG | 0.553467 | 1_3:-17751025 | Msa0107410:intron |
| AGTAAGATGGCATCACCACT+TGG | 0.563966 | 1_3:+17750983 | None:intergenic |
| TGAACGTATGTTGACTGTGT+TGG | 0.597359 | 1_3:-17752008 | Msa0107410:CDS |
| CGATGGATTAATGCTGAGAG+TGG | 0.600634 | 1_3:+17751863 | None:intergenic |
| GTCTCAACACTAGTTGATGT+AGG | 0.620089 | 1_3:-17751332 | Msa0107410:intron |
| TTTGGATTATATAATTCCTG+AGG | 0.621007 | 1_3:-17750041 | Msa0107410:CDS |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1_3:-17752033 | Msa0107410:CDS |
| TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1_3:-17751896 | Msa0107410:CDS |
| ATGTTTGAAAGTGTTCCAAG+TGG | 0.742592 | 1_3:-17750998 | Msa0107410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTCTAATTATTAATTT+TGG | + | chr1_3:17750886-17750905 | None:intergenic | 10.0% |
| !! | TTGAATAAACTTTAATATAT+GGG | - | chr1_3:17752175-17752194 | Msa0107410:CDS | 10.0% |
| !!! | ATTTTCTTTTTTTGTTTTGT+TGG | - | chr1_3:17750180-17750199 | Msa0107410:intron | 15.0% |
| !!! | TGACTATTTTTACTTTATTA+TGG | - | chr1_3:17750302-17750321 | Msa0107410:intron | 15.0% |
| !! | TATGAATGAATTGAATAATT+AGG | - | chr1_3:17750828-17750847 | Msa0107410:intron | 15.0% |
| !!! | TAATTAAAAACCACATTTTT+TGG | - | chr1_3:17751053-17751072 | Msa0107410:intron | 15.0% |
| !! | CAATAAATTGATCTTTAAAT+TGG | - | chr1_3:17751228-17751247 | Msa0107410:intron | 15.0% |
| !!! | TAAGTTTTGAAATTCATTTT+CGG | + | chr1_3:17752014-17752033 | None:intergenic | 15.0% |
| !! | CTTGAATAAACTTTAATATA+TGG | - | chr1_3:17752174-17752193 | Msa0107410:CDS | 15.0% |
| !!! | ATTATGTTGTTTCTTTTTTC+AGG | - | chr1_3:17750407-17750426 | Msa0107410:intron | 20.0% |
| !!! | TCAAATTTTTAACAAAGCAA+TGG | - | chr1_3:17750534-17750553 | Msa0107410:intron | 20.0% |
| !!! | AAATTAATGCCTTTTATTGA+AGG | + | chr1_3:17750685-17750704 | None:intergenic | 20.0% |
| !! | ACTAATGTATATATATTACC+TGG | + | chr1_3:17750745-17750764 | None:intergenic | 20.0% |
| !!! | ATATTCTTCTCTTTTTATAG+TGG | - | chr1_3:17750793-17750812 | Msa0107410:intron | 20.0% |
| !!! | AATTAAGATTTCTTTTCACA+TGG | + | chr1_3:17751038-17751057 | None:intergenic | 20.0% |
| !!! | AATAATTTTACAGCAATGAT+TGG | - | chr1_3:17751300-17751319 | Msa0107410:intron | 20.0% |
| !!! | AATAAATTCTGGAAAAATAG+TGG | + | chr1_3:17751423-17751442 | None:intergenic | 20.0% |
| !!! | CTATTTTTCCAGAATTTATT+TGG | - | chr1_3:17751423-17751442 | Msa0107410:CDS | 20.0% |
| !! | TTAGTTAACCAAATAAATTC+TGG | + | chr1_3:17751434-17751453 | None:intergenic | 20.0% |
| !! | AATTTATTTGGTTAACTAAG+TGG | - | chr1_3:17751435-17751454 | Msa0107410:CDS | 20.0% |
| !!! | GATCTTTATTCATAATTTTG+AGG | - | chr1_3:17751618-17751637 | Msa0107410:intron | 20.0% |
| !! | AAAATAGAATAAATGTGGTT+AGG | + | chr1_3:17751782-17751801 | None:intergenic | 20.0% |
| !! | AGAGAAAAATAGAATAAATG+TGG | + | chr1_3:17751787-17751806 | None:intergenic | 20.0% |
| !!! | AATCTCATGTTTTTAATACA+TGG | - | chr1_3:17751974-17751993 | Msa0107410:CDS | 20.0% |
| !!! | CGTTGTTATTATGTTTTAGT+AGG | - | chr1_3:17749768-17749787 | Msa0107410:three_prime_UTR | 25.0% |
| !! | TTATTCAAACTGTTTCTTCA+AGG | - | chr1_3:17750141-17750160 | Msa0107410:intron | 25.0% |
| !! | TTATTATGGTGTTAACATTC+CGG | - | chr1_3:17750316-17750335 | Msa0107410:intron | 25.0% |
| !! | CGATCGAATTTAAAATTACT+AGG | + | chr1_3:17750360-17750379 | None:intergenic | 25.0% |
| !! | TAATTTTAAATTCGATCGCT+GGG | - | chr1_3:17750362-17750381 | Msa0107410:intron | 25.0% |
| ! | ATCCATGAACTTTATGAAAA+TGG | + | chr1_3:17750474-17750493 | None:intergenic | 25.0% |
| ! | TTCTCCAAATATTTATAAGC+CGG | + | chr1_3:17750499-17750518 | None:intergenic | 25.0% |
| !! | AGAATCCTTTTCATTTCTAA+TGG | + | chr1_3:17750571-17750590 | None:intergenic | 25.0% |
| ! | AGGATTCTTACACTATATAA+AGG | - | chr1_3:17750583-17750602 | Msa0107410:intron | 25.0% |
| ! | TACACTATATAAAGGATTTG+AGG | - | chr1_3:17750591-17750610 | Msa0107410:intron | 25.0% |
| ! | ACACTATATAAAGGATTTGA+GGG | - | chr1_3:17750592-17750611 | Msa0107410:intron | 25.0% |
| ! | TCTGAATATCCTTCAATAAA+AGG | - | chr1_3:17750673-17750692 | Msa0107410:intron | 25.0% |
| ! | AATGATATTCCATTCTTTCT+AGG | + | chr1_3:17750857-17750876 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTCGCTAATAAAT+TGG | - | chr1_3:17751068-17751087 | Msa0107410:intron | 25.0% |
| ! | TTTGTCAATAAGTAGTTTAG+TGG | - | chr1_3:17751098-17751117 | Msa0107410:intron | 25.0% |
| ! | AACTAATTTAGAGATCGATA+TGG | - | chr1_3:17751269-17751288 | Msa0107410:intron | 25.0% |
| !!! | TTAACTGAAATTTTTCAGAG+TGG | + | chr1_3:17751357-17751376 | None:intergenic | 25.0% |
| ! | TTAACTAAGTGGAAAAATAG+TGG | - | chr1_3:17751446-17751465 | Msa0107410:CDS | 25.0% |
| ! | TATTTAGAAGCTGAAAAATG+TGG | + | chr1_3:17751494-17751513 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGCTTCTAAATAG+TGG | - | chr1_3:17751495-17751514 | Msa0107410:intron | 25.0% |
| !! | TTAACTAAAATTTTCCAGAG+TGG | - | chr1_3:17751562-17751581 | Msa0107410:intron | 25.0% |
| ! | AACTATTAATCCAGTTAATG+TGG | - | chr1_3:17751744-17751763 | Msa0107410:intron | 25.0% |
| !!! | ATATTTTAAGCCACATTAAC+TGG | + | chr1_3:17751757-17751776 | None:intergenic | 25.0% |
| ! | TTTGGATTATATAATTCCTG+AGG | - | chr1_3:17751907-17751926 | Msa0107410:CDS | 25.0% |
| !! | ATTAGCACTCTATTTTACTT+TGG | - | chr1_3:17752226-17752245 | Msa0107410:CDS | 25.0% |
| !! | TTTTGCACTTTCTCTAGTTT+TGG | + | chr1_3:17749666-17749685 | None:intergenic | 30.0% |
| AATTGGTCAATACTTTGCAT+TGG | - | chr1_3:17750039-17750058 | Msa0107410:CDS | 30.0% | |
| TACTTTGCATTGGATAAAGA+TGG | - | chr1_3:17750049-17750068 | Msa0107410:CDS | 30.0% | |
| ! | GTAATTTTAAATTCGATCGC+TGG | - | chr1_3:17750361-17750380 | Msa0107410:intron | 30.0% |
| !! | AATCGTTTTGAGCAATACTT+AGG | + | chr1_3:17750390-17750409 | None:intergenic | 30.0% |
| ! | TGAAAATGGTCATTGTTGTT+GGG | + | chr1_3:17750460-17750479 | None:intergenic | 30.0% |
| ATGAAAATGGTCATTGTTGT+TGG | + | chr1_3:17750461-17750480 | None:intergenic | 30.0% | |
| ! | GACCATTTTCATAAAGTTCA+TGG | - | chr1_3:17750469-17750488 | Msa0107410:intron | 30.0% |
| !! | ATCACCGGCTTATAAATATT+TGG | - | chr1_3:17750492-17750511 | Msa0107410:intron | 30.0% |
| !!! | TAATTTTGATTTACCCCAAG+TGG | - | chr1_3:17750699-17750718 | Msa0107410:intron | 30.0% |
| TATATATTACCTGGATGAGT+TGG | + | chr1_3:17750736-17750755 | None:intergenic | 30.0% | |
| ATTAGGAATCCTAGAAAGAA+TGG | - | chr1_3:17750845-17750864 | Msa0107410:intron | 30.0% | |
| TTATTAGCGACCAAAAAATG+TGG | + | chr1_3:17751066-17751085 | None:intergenic | 30.0% | |
| TTCTGTAAGTGTAACTCAAT+TGG | + | chr1_3:17751208-17751227 | None:intergenic | 30.0% | |
| TTTAGAGATCGATATGGATT+TGG | - | chr1_3:17751275-17751294 | Msa0107410:intron | 30.0% | |
| !! | ATTTTTCAGAGTGGTACAAA+GGG | + | chr1_3:17751348-17751367 | None:intergenic | 30.0% |
| !! | AATTTTTCAGAGTGGTACAA+AGG | + | chr1_3:17751349-17751368 | None:intergenic | 30.0% |
| TCACGAAACTGAAAAAAATG+TGG | - | chr1_3:17751518-17751537 | Msa0107410:intron | 30.0% | |
| ! | ACAAAAGAGTGTACACATTA+AGG | - | chr1_3:17751586-17751605 | Msa0107410:intron | 30.0% |
| ! | CAAAAGAGTGTACACATTAA+GGG | - | chr1_3:17751587-17751606 | Msa0107410:intron | 30.0% |
| ! | TAGAGTGTTTCTAATAGTCT+TGG | - | chr1_3:17751708-17751727 | Msa0107410:intron | 30.0% |
| ! | AGAGTGTTTCTAATAGTCTT+GGG | - | chr1_3:17751709-17751728 | Msa0107410:intron | 30.0% |
| !! | TTTAGCTTGTATGTCACAAT+TGG | - | chr1_3:17751813-17751832 | Msa0107410:intron | 30.0% |
| !! | TTAGCTTGTATGTCACAATT+GGG | - | chr1_3:17751814-17751833 | Msa0107410:intron | 30.0% |
| !! | CTCATGTTTTTAATACATGG+TGG | - | chr1_3:17751977-17751996 | Msa0107410:CDS | 30.0% |
| !! | GTTTTTAATACATGGTGGAA+AGG | - | chr1_3:17751982-17752001 | Msa0107410:CDS | 30.0% |
| ACTGCAAGCAATATGAAATT+TGG | + | chr1_3:17752056-17752075 | None:intergenic | 30.0% | |
| ! | AGATTACTGAGCATTTTACT+TGG | - | chr1_3:17752118-17752137 | Msa0107410:intron | 30.0% |
| !! | AAACTGAGTTTGTTTGGTGT+TGG | + | chr1_3:17749708-17749727 | None:intergenic | 35.0% |
| !!! | ATCAACTTTTTCAACCTCAG+GGG | + | chr1_3:17749732-17749751 | None:intergenic | 35.0% |
| !!! | CATCAACTTTTTCAACCTCA+GGG | + | chr1_3:17749733-17749752 | None:intergenic | 35.0% |
| !!! | TCATCAACTTTTTCAACCTC+AGG | + | chr1_3:17749734-17749753 | None:intergenic | 35.0% |
| ATAGCAGCATTTAGTATTGC+AGG | + | chr1_3:17749800-17749819 | None:intergenic | 35.0% | |
| GTTTATGCTCTCTCATCAAT+TGG | - | chr1_3:17750022-17750041 | Msa0107410:CDS | 35.0% | |
| TTTGCATTGGATAAAGATGG+AGG | - | chr1_3:17750052-17750071 | Msa0107410:CDS | 35.0% | |
| AAACATCATGATATCCACGA+TGG | + | chr1_3:17750105-17750124 | None:intergenic | 35.0% | |
| ATCGTGGATATCATGATGTT+TGG | - | chr1_3:17750104-17750123 | Msa0107410:CDS | 35.0% | |
| ! | GTTAACATTCCGGCTTTTAA+CGG | - | chr1_3:17750326-17750345 | Msa0107410:intron | 35.0% |
| ! | GAAAATGGTCATTGTTGTTG+GGG | + | chr1_3:17750459-17750478 | None:intergenic | 35.0% |
| TCATAAAGTTCATGGATCAC+CGG | - | chr1_3:17750477-17750496 | Msa0107410:intron | 35.0% | |
| CTGGTCCATTAGAAATGAAA+AGG | - | chr1_3:17750563-17750582 | Msa0107410:intron | 35.0% | |
| CACATTAATCTTTGCTTGCA+GGG | - | chr1_3:17750906-17750925 | Msa0107410:intron | 35.0% | |
| !! | ATGTTTGAAAGTGTTCCAAG+TGG | - | chr1_3:17750950-17750969 | Msa0107410:intron | 35.0% |
| CTCACTAACCTTTAGTAAGA+TGG | + | chr1_3:17750981-17751000 | None:intergenic | 35.0% | |
| AGATTCACACACATAATGTG+TGG | - | chr1_3:17751123-17751142 | Msa0107410:intron | 35.0% | |
| ACATAATGTGTGGAAAAGTG+CGG | - | chr1_3:17751133-17751152 | Msa0107410:intron | 35.0% | |
| ACCAGAGAAATTATGTGCAA+GGG | + | chr1_3:17751180-17751199 | None:intergenic | 35.0% | |
| TACCAGAGAAATTATGTGCA+AGG | + | chr1_3:17751181-17751200 | None:intergenic | 35.0% | |
| !! | TTTTTCAGAGTGGTACAAAG+GGG | + | chr1_3:17751347-17751366 | None:intergenic | 35.0% |
| GGTCACACAGATCATATATT+TGG | + | chr1_3:17751380-17751399 | None:intergenic | 35.0% | |
| GTCACGCAACTAAAAAAATG+TGG | + | chr1_3:17751401-17751420 | None:intergenic | 35.0% | |
| GGTCACACATAACATACATT+TGG | - | chr1_3:17751539-17751558 | Msa0107410:intron | 35.0% | |
| ! | TGTTTCTAATAGTCTTGGGT+TGG | - | chr1_3:17751713-17751732 | Msa0107410:intron | 35.0% |
| ! | CACAAAGTTTTGCCAAAACA+TGG | - | chr1_3:17751872-17751891 | Msa0107410:CDS | 35.0% |
| ! | AGTTTTGCCAAAACATGGAA+AGG | - | chr1_3:17751877-17751896 | Msa0107410:CDS | 35.0% |
| ! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_3:17751887-17751906 | None:intergenic | 35.0% |
| ! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_3:17751889-17751908 | Msa0107410:CDS | 35.0% |
| ! | TTGAGATTTTGCTTGGGTTT+GGG | + | chr1_3:17751934-17751953 | None:intergenic | 35.0% |
| !! | TTTGAGATTTTGCTTGGGTT+TGG | + | chr1_3:17751935-17751954 | None:intergenic | 35.0% |
| !!! | CATGCTTTGAGATTTTGCTT+GGG | + | chr1_3:17751940-17751959 | None:intergenic | 35.0% |
| !!! | TCAACTTTTTCAACCTCAGG+GGG | + | chr1_3:17749731-17749750 | None:intergenic | 40.0% |
| TCCAAATCAACACCCTGAAT+TGG | - | chr1_3:17749907-17749926 | Msa0107410:CDS | 40.0% | |
| ! | TGAACGTATGTTGACTGTGT+TGG | - | chr1_3:17749940-17749959 | Msa0107410:CDS | 40.0% |
| ACAAGTGAGAAGAGAGTAAC+TGG | + | chr1_3:17749966-17749985 | None:intergenic | 40.0% | |
| TCCATTCGTAGCAATGAAGA+TGG | - | chr1_3:17749986-17750005 | Msa0107410:CDS | 40.0% | |
| ACCATCTTCATTGCTACGAA+TGG | + | chr1_3:17749990-17750009 | None:intergenic | 40.0% | |
| GATAAAGATGGAGGCTCTTT+GGG | - | chr1_3:17750061-17750080 | Msa0107410:CDS | 40.0% | |
| GATCTTCTTCCGTTAAAAGC+CGG | + | chr1_3:17750338-17750357 | None:intergenic | 40.0% | |
| AACAAAGCAATGGCTCAATC+TGG | - | chr1_3:17750544-17750563 | Msa0107410:intron | 40.0% | |
| ! | GTCTCAACACTAGTTGATGT+AGG | - | chr1_3:17750616-17750635 | Msa0107410:intron | 40.0% |
| ! | TCAACACTAGTTGATGTAGG+TGG | - | chr1_3:17750619-17750638 | Msa0107410:intron | 40.0% |
| GCACATTAATCTTTGCTTGC+AGG | - | chr1_3:17750905-17750924 | Msa0107410:intron | 40.0% | |
| ! | TGGTGATGCCATCTTACTAA+AGG | - | chr1_3:17750970-17750989 | Msa0107410:intron | 40.0% |
| AAGGTTAGTGAGTACATGAG+AGG | - | chr1_3:17750989-17751008 | Msa0107410:CDS | 40.0% | |
| AGGTTAGTGAGTACATGAGA+GGG | - | chr1_3:17750990-17751009 | Msa0107410:CDS | 40.0% | |
| ! | CAAAGGGGTGTACACATTAA+GGG | + | chr1_3:17751332-17751351 | None:intergenic | 40.0% |
| ! | ACAAAGGGGTGTACACATTA+AGG | + | chr1_3:17751333-17751352 | None:intergenic | 40.0% |
| ! | TACACTCTTTTGTACCACTC+TGG | + | chr1_3:17751579-17751598 | None:intergenic | 40.0% |
| !!! | GCATGCTTTGAGATTTTGCT+TGG | + | chr1_3:17751941-17751960 | None:intergenic | 40.0% |
| CAAAACTTATGCATGAGCTC+TGG | - | chr1_3:17752025-17752044 | Msa0107410:CDS | 40.0% | |
| AGTGATATCTCAGCTATGTC+TGG | - | chr1_3:17752073-17752092 | Msa0107410:CDS | 40.0% | |
| ! | AGGGGGAAACTGAGTTTGTT+TGG | + | chr1_3:17749714-17749733 | None:intergenic | 45.0% |
| !! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1_3:17749911-17749930 | None:intergenic | 45.0% |
| GGATAAAGATGGAGGCTCTT+TGG | - | chr1_3:17750060-17750079 | Msa0107410:CDS | 45.0% | |
| !! | CGATGGATTAATGCTGAGAG+TGG | + | chr1_3:17750088-17750107 | None:intergenic | 45.0% |
| CTCTCAGCATTAATCCATCG+TGG | - | chr1_3:17750088-17750107 | Msa0107410:CDS | 45.0% | |
| ! | ACACTAGTTGATGTAGGTGG+TGG | - | chr1_3:17750622-17750641 | Msa0107410:intron | 45.0% |
| !! | TTGATGTAGGTGGTGGAGTA+GGG | - | chr1_3:17750629-17750648 | Msa0107410:intron | 45.0% |
| TGGTGCATCTTGAACCACTT+GGG | + | chr1_3:17750716-17750735 | None:intergenic | 45.0% | |
| TTGGTGCATCTTGAACCACT+TGG | + | chr1_3:17750717-17750736 | None:intergenic | 45.0% | |
| AGTAAGATGGCATCACCACT+TGG | + | chr1_3:17750968-17750987 | None:intergenic | 45.0% | |
| GAGAAATTATGTGCAAGGGC+CGG | + | chr1_3:17751176-17751195 | None:intergenic | 45.0% | |
| GCCCTTGCACATAATTTCTC+TGG | - | chr1_3:17751176-17751195 | Msa0107410:intron | 45.0% | |
| ! | CTCAGCTATGTCTGGAGTAA+TGG | - | chr1_3:17752081-17752100 | Msa0107410:CDS | 45.0% |
| ACAAACTCAGTTTCCCCCTG+AGG | - | chr1_3:17749715-17749734 | Msa0107410:three_prime_UTR | 50.0% | |
| AACACCCTGAATTGGCTGAG+AGG | - | chr1_3:17749915-17749934 | Msa0107410:CDS | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | + | chr1_3:17749922-17749941 | None:intergenic | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | + | chr1_3:17749923-17749942 | None:intergenic | 50.0% | |
| !! | GTTGATGTAGGTGGTGGAGT+AGG | - | chr1_3:17750628-17750647 | Msa0107410:intron | 50.0% |
| GGTGCATCTTGAACCACTTG+GGG | + | chr1_3:17750715-17750734 | None:intergenic | 50.0% | |
| CAAGATGCACCAACTCATCC+AGG | - | chr1_3:17750724-17750743 | Msa0107410:intron | 50.0% | |
| GCAGGGATAGAGCATGTTGA+AGG | - | chr1_3:17750923-17750942 | Msa0107410:intron | 50.0% | |
| ! | GTGTGGAAAAGTGCGGAATC+CGG | - | chr1_3:17751140-17751159 | Msa0107410:intron | 50.0% |
| ! | TGTGGAAAAGTGCGGAATCC+GGG | - | chr1_3:17751141-17751160 | Msa0107410:intron | 50.0% |
| ! | GTGGAAAAGTGCGGAATCCG+GGG | - | chr1_3:17751142-17751161 | Msa0107410:intron | 55.0% |
| GGAATCCGGGGTTCAAACTC+CGG | - | chr1_3:17751154-17751173 | Msa0107410:intron | 55.0% | |
| ! | TTGCTTGGGTTTGGGACCTC+AGG | + | chr1_3:17751926-17751945 | None:intergenic | 55.0% |
| AAGGGCCGGAGTTTGAACCC+CGG | + | chr1_3:17751162-17751181 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17749644 | 17752326 | 17749644 | ID=Msa0107410;Name=Msa0107410 |
| chr1_3 | mRNA | 17749644 | 17752326 | 17749644 | ID=Msa0107410-mRNA-1;Parent=Msa0107410;Name=Msa0107410-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.25|0.4|1|0.5|0.4|5|209|323 |
| chr1_3 | exon | 17749644 | 17750152 | 17749644 | ID=Msa0107410-mRNA-1:exon:6666;Parent=Msa0107410-mRNA-1 |
| chr1_3 | exon | 17750979 | 17751043 | 17750979 | ID=Msa0107410-mRNA-1:exon:6665;Parent=Msa0107410-mRNA-1 |
| chr1_3 | exon | 17751333 | 17751485 | 17751333 | ID=Msa0107410-mRNA-1:exon:6664;Parent=Msa0107410-mRNA-1 |
| chr1_3 | exon | 17751864 | 17752111 | 17751864 | ID=Msa0107410-mRNA-1:exon:6663;Parent=Msa0107410-mRNA-1 |
| chr1_3 | exon | 17752121 | 17752326 | 17752121 | ID=Msa0107410-mRNA-1:exon:6662;Parent=Msa0107410-mRNA-1 |
| chr1_3 | CDS | 17752121 | 17752326 | 17752121 | ID=Msa0107410-mRNA-1:cds;Parent=Msa0107410-mRNA-1 |
| chr1_3 | CDS | 17751864 | 17752111 | 17751864 | ID=Msa0107410-mRNA-1:cds;Parent=Msa0107410-mRNA-1 |
| chr1_3 | CDS | 17751333 | 17751485 | 17751333 | ID=Msa0107410-mRNA-1:cds;Parent=Msa0107410-mRNA-1 |
| chr1_3 | CDS | 17750979 | 17751043 | 17750979 | ID=Msa0107410-mRNA-1:cds;Parent=Msa0107410-mRNA-1 |
| chr1_3 | CDS | 17749853 | 17750152 | 17749853 | ID=Msa0107410-mRNA-1:cds;Parent=Msa0107410-mRNA-1 |
| chr1_3 | three_prime_UTR | 17749644 | 17749852 | 17749644 | ID=Msa0107410-mRNA-1:three_prime_utr;Parent=Msa0107410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
