AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0153860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153860 MtrunA17_Chr1g0163621 86.992 369 12 1 1 333 16 384 0.0 649
Msa0153860 MtrunA17_Chr1g0163611 74.865 370 56 2 1 333 1 370 0.0 559
Msa0153860 MtrunA17_Chr1g0163601 71.351 370 69 2 1 333 1 370 0.0 536
Msa0153860 MtrunA17_Chr7g0218131 46.900 371 152 8 3 333 5 370 5.58e-108 319
Msa0153860 MtrunA17_Chr1g0200491 44.892 372 154 7 1 333 13 372 8.86e-106 314
Msa0153860 MtrunA17_Chr7g0218261 45.609 353 150 5 18 333 21 368 7.06e-102 304
Msa0153860 MtrunA17_Chr7g0218271 46.067 356 150 6 18 333 22 375 3.15e-98 295
Msa0153860 MtrunA17_Chr2g0307521 45.429 350 147 6 22 333 20 363 3.92e-98 294
Msa0153860 MtrunA17_Chr7g0218301 45.961 359 151 7 16 333 19 375 4.40e-98 294
Msa0153860 MtrunA17_Chr7g0218211 44.350 354 154 6 18 333 21 369 2.07e-97 292
Msa0153860 MtrunA17_Chr3g0085211 45.152 361 154 7 11 333 16 370 5.56e-97 291
Msa0153860 MtrunA17_Chr7g0218181 43.351 376 161 8 1 333 1 367 6.09e-97 291
Msa0153860 MtrunA17_Chr3g0085201 43.490 361 158 8 12 333 4 357 5.23e-90 273
Msa0153860 MtrunA17_Chr3g0128011 36.022 372 190 8 1 333 55 417 1.34e-78 246
Msa0153860 MtrunA17_Chr1g0170931 91.803 122 10 0 21 142 5 126 2.56e-75 227
Msa0153860 MtrunA17_Chr7g0276401 39.503 362 168 9 13 333 24 375 4.29e-74 233
Msa0153860 MtrunA17_Chr5g0448091 35.537 363 184 9 13 333 9 363 4.60e-68 217
Msa0153860 MtrunA17_Chr7g0276411 35.068 365 188 8 11 333 5 362 2.37e-65 210
Msa0153860 MtrunA17_Chr8g0367451 34.048 373 198 8 1 333 12 376 4.39e-65 210
Msa0153860 MtrunA17_Chr8g0367501 33.149 362 197 6 12 333 9 365 1.26e-64 210
Msa0153860 MtrunA17_Chr8g0367491 34.181 354 186 7 20 333 30 376 5.45e-64 207
Msa0153860 MtrunA17_Chr8g0367441 34.853 373 195 8 1 333 13 377 6.30e-64 207
Msa0153860 MtrunA17_Chr8g0345851 36.268 284 133 7 92 333 13 290 8.32e-53 175
Msa0153860 MtrunA17_Chr8g0367381 31.953 338 167 7 1 299 13 326 1.04e-50 171
Msa0153860 MtrunA17_Chr1g0170951 93.151 73 5 0 243 315 17 89 5.41e-44 146
Msa0153860 MtrunA17_Chr3g0130011 31.302 361 196 9 14 333 9 358 2.88e-42 150
Msa0153860 MtrunA17_Chr2g0314271 30.411 365 197 8 12 333 4 354 2.29e-41 147
Msa0153860 MtrunA17_Chr3g0130061 30.769 364 194 10 14 333 9 358 2.37e-40 145
Msa0153860 MtrunA17_Chr4g0022021 27.515 338 189 11 37 332 44 367 1.01e-30 119
Msa0153860 MtrunA17_Chr4g0021981 27.434 339 188 12 37 332 44 367 1.19e-29 116
Msa0153860 MtrunA17_Chr5g0432251 24.725 364 218 10 14 332 6 358 9.84e-26 105
Msa0153860 MtrunA17_Chr5g0432241 26.216 370 211 11 13 332 2 359 2.13e-25 104
Msa0153860 MtrunA17_Chr8g0367461 42.105 114 63 2 221 333 1 112 3.08e-25 98.2
Msa0153860 MtrunA17_Chr3g0121301 30.952 210 104 5 143 312 134 342 3.75e-25 103
Msa0153860 MtrunA17_Chr7g0223231 23.304 339 184 6 29 317 24 336 9.79e-25 102
Msa0153860 MtrunA17_Chr5g0432301 26.012 346 202 10 29 332 26 359 1.24e-24 102
Msa0153860 MtrunA17_Chr1g0188391 26.970 330 177 10 37 317 33 347 1.90e-24 102
Msa0153860 MtrunA17_Chr7g0219161 26.644 289 167 5 69 318 62 344 2.09e-24 102
Msa0153860 MtrunA17_Chr4g0046361 26.608 342 191 10 37 332 33 360 7.21e-24 100
Msa0153860 MtrunA17_Chr5g0432261 27.302 315 193 11 37 332 29 326 1.02e-23 99.4
Msa0153860 MtrunA17_Chr4g0040621 26.686 341 195 7 22 318 27 356 1.06e-23 100
Msa0153860 MtrunA17_Chr7g0223241 23.894 339 182 6 29 317 24 336 1.14e-23 99.8
Msa0153860 MtrunA17_Chr7g0219141 24.571 350 184 8 37 332 33 356 2.47e-23 99.0
Msa0153860 MtrunA17_Chr6g0482291 32.258 186 79 4 185 333 1 176 3.21e-23 94.7
Msa0153860 MtrunA17_Chr5g0432211 25.344 363 197 10 19 332 7 344 7.24e-23 97.4
Msa0153860 MtrunA17_Chr4g0014561 25.937 347 205 9 29 332 25 362 7.41e-23 97.8
Msa0153860 MtrunA17_Chr4g0046531 25.382 327 187 7 34 317 30 342 1.89e-22 98.2
Msa0153860 MtrunA17_Chr4g0046531 29.101 189 95 2 168 317 516 704 1.21e-21 95.9
Msa0153860 MtrunA17_Chr1g0188371 28.191 188 95 2 164 311 153 340 4.77e-22 95.5
Msa0153860 MtrunA17_Chr4g0014641 25.369 339 201 10 37 332 33 362 1.27e-21 94.4
Msa0153860 MtrunA17_Chr4g0014681 25.360 347 207 9 29 332 25 362 1.41e-21 94.0
Msa0153860 MtrunA17_Chr4g0046341 26.087 345 192 10 37 332 33 363 7.10e-21 92.0
Msa0153860 MtrunA17_Chr7g0219171 34.426 122 74 3 214 332 129 247 1.28e-19 86.7
Msa0153860 MtrunA17_Chr8g0367391 43.564 101 54 2 234 333 36 134 2.76e-18 80.1
Msa0153860 MtrunA17_Chr8g0367411 31.496 127 82 2 12 136 2 125 2.79e-16 74.7
Msa0153860 MtrunA17_Chr8g0367481 33.088 136 85 3 1 134 13 144 6.38e-16 73.9
Msa0153860 MtrunA17_Chr4g0014661 24.855 346 204 9 29 332 25 356 9.40e-16 77.4
Msa0153860 MtrunA17_Chr8g0367421 38.710 93 38 1 162 235 2 94 5.83e-15 70.5
Msa0153860 MtrunA17_Chr6g0476581 54.412 68 26 1 22 89 28 90 6.73e-13 64.7
Msa0153860 MtrunA17_Chr4g0014591 24.784 347 205 9 28 332 24 356 2.78e-12 67.0
Msa0153860 MtrunA17_Chr6g0482281 37.190 121 69 3 18 134 33 150 7.55e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153860 AT5G54160.1 37.430 358 176 7 1 319 1 349 1.82e-75 236
Msa0153860 AT1G77520.1 34.109 387 192 12 3 333 2 381 6.28e-68 218
Msa0153860 AT1G33030.1 33.523 352 181 9 24 333 10 350 5.58e-58 191
Msa0153860 AT1G51990.2 32.635 334 183 6 18 312 13 343 3.65e-57 189
Msa0153860 AT1G63140.2 33.791 364 184 11 18 333 27 381 3.73e-57 190
Msa0153860 AT1G63140.4 33.791 364 184 11 18 333 47 401 3.86e-57 190
Msa0153860 AT1G77530.1 35.159 347 172 9 33 333 42 381 6.28e-57 189
Msa0153860 AT1G51990.1 32.036 334 185 6 18 312 13 343 5.32e-55 184
Msa0153860 AT1G21130.1 33.699 365 184 15 1 319 9 361 2.48e-49 169
Msa0153860 AT5G53810.1 31.988 347 182 11 34 333 39 378 8.37e-49 168
Msa0153860 AT1G21100.1 32.603 365 188 15 1 319 9 361 1.13e-47 165
Msa0153860 AT1G21110.1 31.967 366 189 15 1 319 9 361 2.38e-46 161
Msa0153860 AT1G21120.1 31.967 366 189 15 1 319 9 361 2.20e-45 159
Msa0153860 AT1G76790.1 33.429 347 174 12 22 320 17 354 2.25e-45 159
Msa0153860 AT1G21120.2 31.967 366 189 15 1 319 57 409 2.00e-44 157
Msa0153860 AT3G53140.1 31.161 353 177 9 15 316 7 344 3.52e-38 139
Msa0153860 AT1G62900.1 35.122 205 93 4 167 333 3 205 7.65e-38 134
Msa0153860 AT1G33030.3 32.157 255 123 7 24 237 10 255 5.72e-33 123
Msa0153860 AT5G37170.1 30.503 318 143 10 61 333 50 334 3.17e-32 123
Msa0153860 AT1G33030.2 32.016 253 122 7 24 235 10 253 6.21e-32 120
Msa0153860 AT1G63140.1 31.439 264 128 8 18 235 47 303 1.06e-30 118
Msa0153860 AT5G37170.2 34.171 199 90 4 174 333 38 234 2.14e-29 113
Msa0153860 AT5G37170.3 34.043 188 83 4 185 333 1 186 4.09e-26 103
Msa0153860 AT1G63140.3 34.146 205 118 7 18 212 47 244 2.99e-25 103
Msa0153860 AT4G35160.1 26.616 263 137 9 123 333 123 381 6.26e-24 101
Msa0153860 AT1G77530.2 36.170 188 107 6 33 212 42 224 1.14e-23 98.6
Msa0153860 AT1G21130.2 31.183 279 136 13 1 235 9 275 3.68e-23 97.8
Msa0153860 AT4G35150.1 29.064 203 98 5 161 317 108 310 4.86e-23 97.8

Find 53 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATAAACTTTAATATA+TGG 0.158267 1_4:-17812269 Msa0153860:three_prime_UTR
ACTGCAAGCAATATGAAATT+TGG 0.211032 1_4:+17812390 None:intergenic
ATCCATGAACTTTATGAAAA+TGG 0.232199 1_4:+17815414 None:intergenic
ATCACCGGCTTATAAATATT+TGG 0.239790 1_4:-17815393 Msa0153860:CDS
ACAATCACCTTTCCATGTTT+TGG 0.241056 1_4:+17812559 None:intergenic
TCAAGCCTCTCAGCCAATTC+AGG 0.269845 1_4:+17815965 None:intergenic
ACATGGAAAGGTGATTGTTT+TGG 0.270336 1_4:-17812554 Msa0153860:CDS
TGAAAATGGTCATTGTTGTT+AGG 0.282307 1_4:+17815428 None:intergenic
GGATAAAGATGGAGGCTCTT+TGG 0.282636 1_4:-17815825 Msa0153860:CDS
GCCAATTCAGGGTGTTGATT+TGG 0.300679 1_4:+17815977 None:intergenic
TTTAGCTTGTATGTCACAAT+TGG 0.318038 1_4:-17812630 Msa0153860:intron
TTGAATAAACTTTAATATAT+GGG 0.330332 1_4:-17812268 Msa0153860:three_prime_UTR
TGTTGGAAACTGAGTTTGTT+TGG 0.332085 1_4:+17816174 None:intergenic
GATAAAGATGGAGGCTCTTT+GGG 0.338071 1_4:-17815824 Msa0153860:CDS
AGGATTCTTACACTATATAA+AGG 0.342110 1_4:-17815302 Msa0153860:CDS
GAAAATGGTCATTGTTGTTA+GGG 0.378056 1_4:+17815429 None:intergenic
ATAGCAGCATTTAGTATTGC+AGG 0.379466 1_4:+17816088 None:intergenic
TTCTTTCTTACAATCTTCAT+TGG 0.380723 1_4:+17815889 None:intergenic
TCCAAATCAACACCCTGAAT+TGG 0.385842 1_4:-17815978 Msa0153860:CDS
AACAAAGCAATGGCTCAATC+TGG 0.399952 1_4:-17815341 Msa0153860:CDS
TTGCTTGGGTTTGGGACCTC+AGG 0.403803 1_4:+17812520 None:intergenic
TACACTATATAAAGGATTTG+AGG 0.415995 1_4:-17815294 Msa0153860:CDS
CTCAGCTATGTCTGGAGTAA+TGG 0.435264 1_4:-17812362 Msa0153860:CDS
ATCGTGGATATCATGATGTT+TGG 0.437952 1_4:-17815781 Msa0153860:intron
TTCTCCAAATATTTATAAGC+CGG 0.439608 1_4:+17815389 None:intergenic
GTTTATGCTCTCTCATCAAT+TGG 0.442550 1_4:-17815863 Msa0153860:CDS
CAAAACTTATGCATGAGCTC+TGG 0.450322 1_4:-17812418 Msa0153860:CDS
TACTTTGCATTGGATAAAGA+TGG 0.457504 1_4:-17815836 Msa0153860:CDS
CACAAAGCTTTGCCAAAACA+TGG 0.460437 1_4:-17812571 Msa0153860:CDS
ACACTATATAAAGGATTTGA+GGG 0.464404 1_4:-17815293 Msa0153860:CDS
CTGGTCCATTAGAAATGAAA+AGG 0.467725 1_4:-17815322 Msa0153860:CDS
AATTGGTCAATACTTTGCAT+TGG 0.471367 1_4:-17815846 Msa0153860:CDS
CTCACTAACCTTTAGTAAGA+TGG 0.473210 1_4:+17814911 None:intergenic
AGTGATATCTCAGCTATGTC+TGG 0.511397 1_4:-17812370 Msa0153860:CDS
TTAGCTTGTATGTCACAATT+GGG 0.515973 1_4:-17812629 Msa0153860:intron
AAACTGAGTTTGTTTGGAGT+TGG 0.519524 1_4:+17816180 None:intergenic
TCATAAAGTTCATGGATCAC+CGG 0.521104 1_4:-17815408 Msa0153860:CDS
ACAATCTTCATTGGTACGAA+TGG 0.523288 1_4:+17815898 None:intergenic
TGGTGATGCCATCTTACTAA+AGG 0.525689 1_4:-17814919 Msa0153860:intron
CAAGCCTCTCAGCCAATTCA+GGG 0.537180 1_4:+17815966 None:intergenic
GCAGGGATAGAGCATGTTGA+AGG 0.553467 1_4:-17814966 Msa0153860:intron
TGAACGTATGTTGACTGTGT+TGG 0.557787 1_4:-17815945 Msa0153860:CDS
AGTAAGATGGCATCACCACT+TGG 0.563966 1_4:+17814924 None:intergenic
AGCTTTGCCAAAACATGGAA+AGG 0.583092 1_4:-17812566 Msa0153860:CDS
CGATGGATTAATGCTGAGAG+TGG 0.600634 1_4:+17815800 None:intergenic
GTCTCAACACTAGTTGATGT+AGG 0.620089 1_4:-17815269 Msa0153860:intron
TTTGGATTATATAATTCCTG+AGG 0.621007 1_4:-17812536 Msa0153860:CDS
AACACCCTGAATTGGCTGAG+AGG 0.629156 1_4:-17815970 Msa0153860:CDS
TTTGCATTGGATAAAGATGG+AGG 0.638338 1_4:-17815833 Msa0153860:CDS
CTCTCAGCATTAATCCATCG+TGG 0.651626 1_4:-17815797 Msa0153860:CDS
ACAAACTCAGTTTCCAACAG+AGG 0.673127 1_4:-17816170 Msa0153860:CDS
AAACATCATGATATCCACGA+TGG 0.677658 1_4:+17815783 None:intergenic
ATGTTTGAAAGTGTTCCAAG+TGG 0.742592 1_4:-17814939 Msa0153860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTCTAATTATTAATTT+TGG + chr1_4:17813370-17813389 None:intergenic 10.0%
!! TTGAATAAACTTTAATATAT+GGG - chr1_4:17816105-17816124 Msa0153860:CDS 10.0%
!!! CATTTTCTAATTATTAATTT+TGG + chr1_4:17813370-17813389 None:intergenic 10.0%
!! TTGAATAAACTTTAATATAT+GGG - chr1_4:17816105-17816124 Msa0153860:CDS 10.0%
!!! ATTTTCTTTTTTTGTTTTGT+TGG - chr1_4:17812668-17812687 Msa0153860:intron 15.0%
!!! TGACTATTTTTACTTTATTA+TGG - chr1_4:17812790-17812809 Msa0153860:intron 15.0%
!! TATGAATGAATTGAATAATT+AGG - chr1_4:17813312-17813331 Msa0153860:intron 15.0%
!!! TATTTAAAAACCACATTTTT+TGG - chr1_4:17813537-17813556 Msa0153860:intron 15.0%
!! CAATAAATTGATCTTTAAAT+TGG - chr1_4:17813710-17813729 Msa0153860:intron 15.0%
!! TCAAAATTATGAATAAAGAT+TGG + chr1_4:17814100-17814119 None:intergenic 15.0%
!!! AATCTTTATTCATAATTTTG+AGG - chr1_4:17814099-17814118 Msa0153860:intron 15.0%
!! AAAAAGAATTAAAAAGGAAT+TGG - chr1_4:17814446-17814465 Msa0153860:intron 15.0%
!! TTATAAACTAGATGATTTAT+TGG - chr1_4:17814634-17814653 Msa0153860:intron 15.0%
!! ACAAACAATAATTAAAAATC+CGG + chr1_4:17815056-17815075 None:intergenic 15.0%
!!! AAAGTGGTTTTTTTTTAATA+GGG - chr1_4:17815570-17815589 Msa0153860:intron 15.0%
!!! TAAGTTTTGAAATTCATTTT+CGG + chr1_4:17815944-17815963 None:intergenic 15.0%
!! CTTGAATAAACTTTAATATA+TGG - chr1_4:17816104-17816123 Msa0153860:CDS 15.0%
!!! ATTTTCTTTTTTTGTTTTGT+TGG - chr1_4:17812668-17812687 Msa0153860:intron 15.0%
!!! TGACTATTTTTACTTTATTA+TGG - chr1_4:17812790-17812809 Msa0153860:intron 15.0%
!! TATGAATGAATTGAATAATT+AGG - chr1_4:17813312-17813331 Msa0153860:intron 15.0%
!!! TATTTAAAAACCACATTTTT+TGG - chr1_4:17813537-17813556 Msa0153860:intron 15.0%
!! CAATAAATTGATCTTTAAAT+TGG - chr1_4:17813710-17813729 Msa0153860:intron 15.0%
!! TCAAAATTATGAATAAAGAT+TGG + chr1_4:17814100-17814119 None:intergenic 15.0%
!!! AATCTTTATTCATAATTTTG+AGG - chr1_4:17814099-17814118 Msa0153860:intron 15.0%
!! AAAAAGAATTAAAAAGGAAT+TGG - chr1_4:17814446-17814465 Msa0153860:intron 15.0%
!! TTATAAACTAGATGATTTAT+TGG - chr1_4:17814634-17814653 Msa0153860:intron 15.0%
!! ACAAACAATAATTAAAAATC+CGG + chr1_4:17815056-17815075 None:intergenic 15.0%
!!! AAAGTGGTTTTTTTTTAATA+GGG - chr1_4:17815570-17815589 Msa0153860:intron 15.0%
!!! TAAGTTTTGAAATTCATTTT+CGG + chr1_4:17815944-17815963 None:intergenic 15.0%
!! CTTGAATAAACTTTAATATA+TGG - chr1_4:17816104-17816123 Msa0153860:CDS 15.0%
!!! ATTATGTTGTTTCTTTTTTC+AGG - chr1_4:17812895-17812914 Msa0153860:intron 20.0%
!!! TCAAATTTTTAACAAAGCAA+TGG - chr1_4:17813022-17813041 Msa0153860:intron 20.0%
!!! AAATTAATGCCTTTTATTGA+AGG + chr1_4:17813173-17813192 None:intergenic 20.0%
!! TTATGTGTATATATATTACC+TGG + chr1_4:17813233-17813252 None:intergenic 20.0%
!!! ATATTCTTCTCTTTTTATAG+TGG - chr1_4:17813277-17813296 Msa0153860:intron 20.0%
!!! AAATAAGATTTCTTTTCACA+TGG + chr1_4:17813522-17813541 None:intergenic 20.0%
!! AACTAATTTAGAGATCAATA+TGG - chr1_4:17813751-17813770 Msa0153860:intron 20.0%
!!! AATAATTTTACAGCAATGAT+TGG - chr1_4:17813782-17813801 Msa0153860:intron 20.0%
!!! AATAAATTCTGGAAAAATAG+TGG + chr1_4:17813905-17813924 None:intergenic 20.0%
!!! CTATTTTTCCAGAATTTATT+TGG - chr1_4:17813905-17813924 Msa0153860:intron 20.0%
!! TTAGTTAACCAAATAAATTC+TGG + chr1_4:17813916-17813935 None:intergenic 20.0%
!! AATTTATTTGGTTAACTAAG+TGG - chr1_4:17813917-17813936 Msa0153860:intron 20.0%
!!! TTAACTAAAATTTTCCAAAG+TGG - chr1_4:17814043-17814062 Msa0153860:intron 20.0%
!!! AAAGTGGTTTTTTTTAATAG+GGG + chr1_4:17814258-17814277 None:intergenic 20.0%
!!! GAAAGTGGTTTTTTTTAATA+GGG + chr1_4:17814259-17814278 None:intergenic 20.0%
!! TTAATTAATTAAATGTCACG+TGG + chr1_4:17814369-17814388 None:intergenic 20.0%
!!! TTTTACTTGCTTTTCATTTA+TGG + chr1_4:17814788-17814807 None:intergenic 20.0%
!! TAAAAAATGAAGAAGATAGA+AGG - chr1_4:17815285-17815304 Msa0153860:CDS 20.0%
!!! ATGAATTTTTGCCAATTAAA+AGG + chr1_4:17815399-17815418 None:intergenic 20.0%
!!! GAAAGTGGTTTTTTTTTAAT+AGG - chr1_4:17815569-17815588 Msa0153860:intron 20.0%
!!! AAGTGGTTTTTTTTTAATAG+GGG - chr1_4:17815571-17815590 Msa0153860:intron 20.0%
!! AATTAATAATTCTGTCAATG+TGG - chr1_4:17815674-17815693 Msa0153860:intron 20.0%
!! AAAATACAATAAATGTGGTT+AGG + chr1_4:17815712-17815731 None:intergenic 20.0%
!! AGAGAAAAATACAATAAATG+TGG + chr1_4:17815717-17815736 None:intergenic 20.0%
!!! AATCTCATGTTTTTAATACA+TGG - chr1_4:17815904-17815923 Msa0153860:CDS 20.0%
!!! ATTATGTTGTTTCTTTTTTC+AGG - chr1_4:17812895-17812914 Msa0153860:intron 20.0%
!!! TCAAATTTTTAACAAAGCAA+TGG - chr1_4:17813022-17813041 Msa0153860:intron 20.0%
!!! AAATTAATGCCTTTTATTGA+AGG + chr1_4:17813173-17813192 None:intergenic 20.0%
!! TTATGTGTATATATATTACC+TGG + chr1_4:17813233-17813252 None:intergenic 20.0%
!!! ATATTCTTCTCTTTTTATAG+TGG - chr1_4:17813277-17813296 Msa0153860:intron 20.0%
!!! AAATAAGATTTCTTTTCACA+TGG + chr1_4:17813522-17813541 None:intergenic 20.0%
!! AACTAATTTAGAGATCAATA+TGG - chr1_4:17813751-17813770 Msa0153860:intron 20.0%
!!! AATAATTTTACAGCAATGAT+TGG - chr1_4:17813782-17813801 Msa0153860:intron 20.0%
!!! AATAAATTCTGGAAAAATAG+TGG + chr1_4:17813905-17813924 None:intergenic 20.0%
!!! CTATTTTTCCAGAATTTATT+TGG - chr1_4:17813905-17813924 Msa0153860:intron 20.0%
!! TTAGTTAACCAAATAAATTC+TGG + chr1_4:17813916-17813935 None:intergenic 20.0%
!! AATTTATTTGGTTAACTAAG+TGG - chr1_4:17813917-17813936 Msa0153860:intron 20.0%
!!! TTAACTAAAATTTTCCAAAG+TGG - chr1_4:17814043-17814062 Msa0153860:intron 20.0%
!!! AAAGTGGTTTTTTTTAATAG+GGG + chr1_4:17814258-17814277 None:intergenic 20.0%
!!! GAAAGTGGTTTTTTTTAATA+GGG + chr1_4:17814259-17814278 None:intergenic 20.0%
!! TTAATTAATTAAATGTCACG+TGG + chr1_4:17814369-17814388 None:intergenic 20.0%
!!! TTTTACTTGCTTTTCATTTA+TGG + chr1_4:17814788-17814807 None:intergenic 20.0%
!! TAAAAAATGAAGAAGATAGA+AGG - chr1_4:17815285-17815304 Msa0153860:CDS 20.0%
!!! ATGAATTTTTGCCAATTAAA+AGG + chr1_4:17815399-17815418 None:intergenic 20.0%
!!! GAAAGTGGTTTTTTTTTAAT+AGG - chr1_4:17815569-17815588 Msa0153860:intron 20.0%
!!! AAGTGGTTTTTTTTTAATAG+GGG - chr1_4:17815571-17815590 Msa0153860:intron 20.0%
!! AATTAATAATTCTGTCAATG+TGG - chr1_4:17815674-17815693 Msa0153860:intron 20.0%
!! AAAATACAATAAATGTGGTT+AGG + chr1_4:17815712-17815731 None:intergenic 20.0%
!! AGAGAAAAATACAATAAATG+TGG + chr1_4:17815717-17815736 None:intergenic 20.0%
!!! AATCTCATGTTTTTAATACA+TGG - chr1_4:17815904-17815923 Msa0153860:CDS 20.0%
! TTCTTTCTTACAATCTTCAT+TGG + chr1_4:17812487-17812506 None:intergenic 25.0%
!! TTATTCAAACTGTTTCTTCA+AGG - chr1_4:17812629-17812648 Msa0153860:intron 25.0%
!! TTATTATGGTGTTAACATTC+CGG - chr1_4:17812804-17812823 Msa0153860:intron 25.0%
!! CGATCGAATTTAAAATTTCT+AGG + chr1_4:17812848-17812867 None:intergenic 25.0%
!! AAATTTTAAATTCGATCGCT+GGG - chr1_4:17812850-17812869 Msa0153860:intron 25.0%
!!! AATCGTTTTGAACAATACTT+AGG + chr1_4:17812878-17812897 None:intergenic 25.0%
! ATCCATGAACTTTATGAAAA+TGG + chr1_4:17812962-17812981 None:intergenic 25.0%
! TTCTCCAAATATTTATAAGC+CGG + chr1_4:17812987-17813006 None:intergenic 25.0%
!! AGAATCCTTTTCATTTCTAA+TGG + chr1_4:17813059-17813078 None:intergenic 25.0%
! AGGATTCTTACACTATATAA+AGG - chr1_4:17813071-17813090 Msa0153860:intron 25.0%
! TACACTATATAAAGGATTTG+AGG - chr1_4:17813079-17813098 Msa0153860:intron 25.0%
! ACACTATATAAAGGATTTGA+GGG - chr1_4:17813080-17813099 Msa0153860:intron 25.0%
! TCTGAATATCCTTCAATAAA+AGG - chr1_4:17813161-17813180 Msa0153860:intron 25.0%
! AATGATATTCCATTCTTTCT+AGG + chr1_4:17813341-17813360 None:intergenic 25.0%
!!! TTTTTTGGTCGCTAATAAAT+TGG - chr1_4:17813552-17813571 Msa0153860:intron 25.0%
! TTTGTCAATAAGTAGTTTAG+TGG - chr1_4:17813582-17813601 Msa0153860:intron 25.0%
! TTTAGAGATCAATATGGATT+TGG - chr1_4:17813757-17813776 Msa0153860:intron 25.0%
!!! TTAACTGAAATTTTTCAGAG+TGG + chr1_4:17813839-17813858 None:intergenic 25.0%
! TTAACTAAGTGGAAAAAAAG+TGG - chr1_4:17813928-17813947 Msa0153860:intron 25.0%
! TATTTAGAAGCTGAAAAATG+TGG + chr1_4:17813976-17813995 None:intergenic 25.0%
!!! ATTTTTCAGCTTCTAAATAG+TGG - chr1_4:17813977-17813996 Msa0153860:intron 25.0%
! TTACATAGAGAGTTTCTAAT+AGG - chr1_4:17814184-17814203 Msa0153860:intron 25.0%
!!! AAGTGGTTTTTTTTAATAGG+GGG + chr1_4:17814257-17814276 None:intergenic 25.0%
!!! GGAAAGTGGTTTTTTTTAAT+AGG + chr1_4:17814260-17814279 None:intergenic 25.0%
!!! GTGTATAAAGAGCTTTTTTT+TGG + chr1_4:17814500-17814519 None:intergenic 25.0%
!!! TCTAGTTTATAACAACGTTT+TGG + chr1_4:17814626-17814645 None:intergenic 25.0%
! TGATTTATTGGAACAATACA+AGG - chr1_4:17814646-17814665 Msa0153860:intron 25.0%
! AAACACAAAGTGAAGTTATT+TGG - chr1_4:17814847-17814866 Msa0153860:intron 25.0%
! AACAATAATTAAAAATCCGG+TGG + chr1_4:17815053-17815072 None:intergenic 25.0%
! TATTGTTTGTGATGAATTTG+AGG - chr1_4:17815066-17815085 Msa0153860:intron 25.0%
! ATTGTTTGTGATGAATTTGA+GGG - chr1_4:17815067-17815086 Msa0153860:intron 25.0%
! TTAATTAATTAAATGCCACG+TGG - chr1_4:17815459-17815478 Msa0153860:CDS 25.0%
!!! AGTGGTTTTTTTTTAATAGG+GGG - chr1_4:17815572-17815591 Msa0153860:intron 25.0%
! TTTGGATTATATAATTCCTG+AGG - chr1_4:17815837-17815856 Msa0153860:CDS 25.0%
!! ATTAGCACTCTATTTTACTT+TGG - chr1_4:17816156-17816175 Msa0153860:CDS 25.0%
! TTCTTTCTTACAATCTTCAT+TGG + chr1_4:17812487-17812506 None:intergenic 25.0%
!! TTATTCAAACTGTTTCTTCA+AGG - chr1_4:17812629-17812648 Msa0153860:intron 25.0%
!! TTATTATGGTGTTAACATTC+CGG - chr1_4:17812804-17812823 Msa0153860:intron 25.0%
!! CGATCGAATTTAAAATTTCT+AGG + chr1_4:17812848-17812867 None:intergenic 25.0%
!! AAATTTTAAATTCGATCGCT+GGG - chr1_4:17812850-17812869 Msa0153860:intron 25.0%
!!! AATCGTTTTGAACAATACTT+AGG + chr1_4:17812878-17812897 None:intergenic 25.0%
! ATCCATGAACTTTATGAAAA+TGG + chr1_4:17812962-17812981 None:intergenic 25.0%
! TTCTCCAAATATTTATAAGC+CGG + chr1_4:17812987-17813006 None:intergenic 25.0%
!! AGAATCCTTTTCATTTCTAA+TGG + chr1_4:17813059-17813078 None:intergenic 25.0%
! AGGATTCTTACACTATATAA+AGG - chr1_4:17813071-17813090 Msa0153860:intron 25.0%
! TACACTATATAAAGGATTTG+AGG - chr1_4:17813079-17813098 Msa0153860:intron 25.0%
! ACACTATATAAAGGATTTGA+GGG - chr1_4:17813080-17813099 Msa0153860:intron 25.0%
! TCTGAATATCCTTCAATAAA+AGG - chr1_4:17813161-17813180 Msa0153860:intron 25.0%
! AATGATATTCCATTCTTTCT+AGG + chr1_4:17813341-17813360 None:intergenic 25.0%
!!! TTTTTTGGTCGCTAATAAAT+TGG - chr1_4:17813552-17813571 Msa0153860:intron 25.0%
! TTTGTCAATAAGTAGTTTAG+TGG - chr1_4:17813582-17813601 Msa0153860:intron 25.0%
! TTTAGAGATCAATATGGATT+TGG - chr1_4:17813757-17813776 Msa0153860:intron 25.0%
!!! TTAACTGAAATTTTTCAGAG+TGG + chr1_4:17813839-17813858 None:intergenic 25.0%
! TTAACTAAGTGGAAAAAAAG+TGG - chr1_4:17813928-17813947 Msa0153860:intron 25.0%
! TATTTAGAAGCTGAAAAATG+TGG + chr1_4:17813976-17813995 None:intergenic 25.0%
!!! ATTTTTCAGCTTCTAAATAG+TGG - chr1_4:17813977-17813996 Msa0153860:intron 25.0%
! TTACATAGAGAGTTTCTAAT+AGG - chr1_4:17814184-17814203 Msa0153860:intron 25.0%
!!! AAGTGGTTTTTTTTAATAGG+GGG + chr1_4:17814257-17814276 None:intergenic 25.0%
!!! GGAAAGTGGTTTTTTTTAAT+AGG + chr1_4:17814260-17814279 None:intergenic 25.0%
!!! GTGTATAAAGAGCTTTTTTT+TGG + chr1_4:17814500-17814519 None:intergenic 25.0%
!!! TCTAGTTTATAACAACGTTT+TGG + chr1_4:17814626-17814645 None:intergenic 25.0%
! TGATTTATTGGAACAATACA+AGG - chr1_4:17814646-17814665 Msa0153860:intron 25.0%
! AAACACAAAGTGAAGTTATT+TGG - chr1_4:17814847-17814866 Msa0153860:intron 25.0%
! AACAATAATTAAAAATCCGG+TGG + chr1_4:17815053-17815072 None:intergenic 25.0%
! TATTGTTTGTGATGAATTTG+AGG - chr1_4:17815066-17815085 Msa0153860:intron 25.0%
! ATTGTTTGTGATGAATTTGA+GGG - chr1_4:17815067-17815086 Msa0153860:intron 25.0%
! TTAATTAATTAAATGCCACG+TGG - chr1_4:17815459-17815478 Msa0153860:CDS 25.0%
!!! AGTGGTTTTTTTTTAATAGG+GGG - chr1_4:17815572-17815591 Msa0153860:intron 25.0%
! TTTGGATTATATAATTCCTG+AGG - chr1_4:17815837-17815856 Msa0153860:CDS 25.0%
!! ATTAGCACTCTATTTTACTT+TGG - chr1_4:17816156-17816175 Msa0153860:CDS 25.0%
!! TTTTGCACTTTCTCTAGTTT+TGG + chr1_4:17812154-17812173 None:intergenic 30.0%
!!! CGTTGTTACTATGTTTTAGT+AGG - chr1_4:17812256-17812275 Msa0153860:three_prime_UTR 30.0%
AATTGGTCAATACTTTGCAT+TGG - chr1_4:17812527-17812546 Msa0153860:CDS 30.0%
TACTTTGCATTGGATAAAGA+TGG - chr1_4:17812537-17812556 Msa0153860:CDS 30.0%
! GAAATTTTAAATTCGATCGC+TGG - chr1_4:17812849-17812868 Msa0153860:intron 30.0%
! GAAAATGGTCATTGTTGTTA+GGG + chr1_4:17812947-17812966 None:intergenic 30.0%
! TGAAAATGGTCATTGTTGTT+AGG + chr1_4:17812948-17812967 None:intergenic 30.0%
! GACCATTTTCATAAAGTTCA+TGG - chr1_4:17812957-17812976 Msa0153860:intron 30.0%
!! ATCACCGGCTTATAAATATT+TGG - chr1_4:17812980-17812999 Msa0153860:intron 30.0%
!!! TAATTTTGATTTACCCCAAG+TGG - chr1_4:17813187-17813206 Msa0153860:intron 30.0%
TATATATTACCTGGATGAGT+TGG + chr1_4:17813224-17813243 None:intergenic 30.0%
ATTAGGAATCCTAGAAAGAA+TGG - chr1_4:17813329-17813348 Msa0153860:intron 30.0%
TTATTAGCGACCAAAAAATG+TGG + chr1_4:17813550-17813569 None:intergenic 30.0%
TTCTGTAAGTGTAACTCAAT+TGG + chr1_4:17813690-17813709 None:intergenic 30.0%
!! ATTTTTCAGAGTGGTACAAA+GGG + chr1_4:17813830-17813849 None:intergenic 30.0%
!! AATTTTTCAGAGTGGTACAA+AGG + chr1_4:17813831-17813850 None:intergenic 30.0%
GGTCACACAAATCATATATT+TGG + chr1_4:17813862-17813881 None:intergenic 30.0%
! ACAAAAGAGTGTACACATTA+AGG - chr1_4:17814067-17814086 Msa0153860:intron 30.0%
! CAAAAGAGTGTACACATTAA+GGG - chr1_4:17814068-17814087 Msa0153860:intron 30.0%
GTTTGAAGAAGATTAAGACA+AGG + chr1_4:17814582-17814601 None:intergenic 30.0%
!! ACTATTGTGTGTTTTTATGG+TGG + chr1_4:17814689-17814708 None:intergenic 30.0%
!! TGCACTATTGTGTGTTTTTA+TGG + chr1_4:17814692-17814711 None:intergenic 30.0%
AGAGAACACATAAACAAACA+AGG - chr1_4:17814730-17814749 Msa0153860:intron 30.0%
AACACATAAACAAACAAGGA+AGG - chr1_4:17814734-17814753 Msa0153860:intron 30.0%
! TGGTGTTTTGTGTTACAATT+TGG - chr1_4:17814867-17814886 Msa0153860:intron 30.0%
AATAATTAAAAATCCGGTGG+TGG + chr1_4:17815050-17815069 None:intergenic 30.0%
!!! GTGAGTTTTGGTTTGAATTT+TGG - chr1_4:17815134-17815153 Msa0153860:intron 30.0%
!!! AGTTTTGGTTTGAATTTTGG+TGG - chr1_4:17815137-17815156 Msa0153860:intron 30.0%
GAGAGAAAATTGAGAAGAAA+CGG - chr1_4:17815170-17815189 Msa0153860:intron 30.0%
!!! ACTTGATTTTGTTTTCCCAT+AGG - chr1_4:17815238-17815257 Msa0153860:intron 30.0%
!! TTACAAGAAGCATTGAAGAA+TGG + chr1_4:17815268-17815287 None:intergenic 30.0%
AAGATAGAAGGAAGAAGAAA+GGG - chr1_4:17815297-17815316 Msa0153860:CDS 30.0%
GAAGAAAGAAATAGAAACCA+GGG - chr1_4:17815343-17815362 Msa0153860:CDS 30.0%
AAGAAAGAAATAGAAACCAG+GGG - chr1_4:17815344-17815363 Msa0153860:CDS 30.0%
CCAACACAAGAATATTAGAA+AGG + chr1_4:17815646-17815665 None:intergenic 30.0%
CCTTTCTAATATTCTTGTGT+TGG - chr1_4:17815643-17815662 Msa0153860:intron 30.0%
!! TTTAGCTTGTATGTCACAAT+TGG - chr1_4:17815743-17815762 Msa0153860:intron 30.0%
!! TTAGCTTGTATGTCACAATT+GGG - chr1_4:17815744-17815763 Msa0153860:intron 30.0%
!! CTCATGTTTTTAATACATGG+TGG - chr1_4:17815907-17815926 Msa0153860:CDS 30.0%
!! GTTTTTAATACATGGTGGAA+AGG - chr1_4:17815912-17815931 Msa0153860:CDS 30.0%
ACTGCAAGCAATATGAAATT+TGG + chr1_4:17815986-17816005 None:intergenic 30.0%
! AGATTACTGAGCATTTTACT+TGG - chr1_4:17816048-17816067 Msa0153860:CDS 30.0%
!! TTTTGCACTTTCTCTAGTTT+TGG + chr1_4:17812154-17812173 None:intergenic 30.0%
!!! CGTTGTTACTATGTTTTAGT+AGG - chr1_4:17812256-17812275 Msa0153860:three_prime_UTR 30.0%
AATTGGTCAATACTTTGCAT+TGG - chr1_4:17812527-17812546 Msa0153860:CDS 30.0%
TACTTTGCATTGGATAAAGA+TGG - chr1_4:17812537-17812556 Msa0153860:CDS 30.0%
! GAAATTTTAAATTCGATCGC+TGG - chr1_4:17812849-17812868 Msa0153860:intron 30.0%
! GAAAATGGTCATTGTTGTTA+GGG + chr1_4:17812947-17812966 None:intergenic 30.0%
! TGAAAATGGTCATTGTTGTT+AGG + chr1_4:17812948-17812967 None:intergenic 30.0%
! GACCATTTTCATAAAGTTCA+TGG - chr1_4:17812957-17812976 Msa0153860:intron 30.0%
!! ATCACCGGCTTATAAATATT+TGG - chr1_4:17812980-17812999 Msa0153860:intron 30.0%
!!! TAATTTTGATTTACCCCAAG+TGG - chr1_4:17813187-17813206 Msa0153860:intron 30.0%
TATATATTACCTGGATGAGT+TGG + chr1_4:17813224-17813243 None:intergenic 30.0%
ATTAGGAATCCTAGAAAGAA+TGG - chr1_4:17813329-17813348 Msa0153860:intron 30.0%
TTATTAGCGACCAAAAAATG+TGG + chr1_4:17813550-17813569 None:intergenic 30.0%
TTCTGTAAGTGTAACTCAAT+TGG + chr1_4:17813690-17813709 None:intergenic 30.0%
!! ATTTTTCAGAGTGGTACAAA+GGG + chr1_4:17813830-17813849 None:intergenic 30.0%
!! AATTTTTCAGAGTGGTACAA+AGG + chr1_4:17813831-17813850 None:intergenic 30.0%
GGTCACACAAATCATATATT+TGG + chr1_4:17813862-17813881 None:intergenic 30.0%
! ACAAAAGAGTGTACACATTA+AGG - chr1_4:17814067-17814086 Msa0153860:intron 30.0%
! CAAAAGAGTGTACACATTAA+GGG - chr1_4:17814068-17814087 Msa0153860:intron 30.0%
GTTTGAAGAAGATTAAGACA+AGG + chr1_4:17814582-17814601 None:intergenic 30.0%
!! ACTATTGTGTGTTTTTATGG+TGG + chr1_4:17814689-17814708 None:intergenic 30.0%
!! TGCACTATTGTGTGTTTTTA+TGG + chr1_4:17814692-17814711 None:intergenic 30.0%
AGAGAACACATAAACAAACA+AGG - chr1_4:17814730-17814749 Msa0153860:intron 30.0%
AACACATAAACAAACAAGGA+AGG - chr1_4:17814734-17814753 Msa0153860:intron 30.0%
! TGGTGTTTTGTGTTACAATT+TGG - chr1_4:17814867-17814886 Msa0153860:intron 30.0%
AATAATTAAAAATCCGGTGG+TGG + chr1_4:17815050-17815069 None:intergenic 30.0%
!!! GTGAGTTTTGGTTTGAATTT+TGG - chr1_4:17815134-17815153 Msa0153860:intron 30.0%
!!! AGTTTTGGTTTGAATTTTGG+TGG - chr1_4:17815137-17815156 Msa0153860:intron 30.0%
GAGAGAAAATTGAGAAGAAA+CGG - chr1_4:17815170-17815189 Msa0153860:intron 30.0%
!!! ACTTGATTTTGTTTTCCCAT+AGG - chr1_4:17815238-17815257 Msa0153860:intron 30.0%
!! TTACAAGAAGCATTGAAGAA+TGG + chr1_4:17815268-17815287 None:intergenic 30.0%
AAGATAGAAGGAAGAAGAAA+GGG - chr1_4:17815297-17815316 Msa0153860:CDS 30.0%
GAAGAAAGAAATAGAAACCA+GGG - chr1_4:17815343-17815362 Msa0153860:CDS 30.0%
AAGAAAGAAATAGAAACCAG+GGG - chr1_4:17815344-17815363 Msa0153860:CDS 30.0%
CCAACACAAGAATATTAGAA+AGG + chr1_4:17815646-17815665 None:intergenic 30.0%
CCTTTCTAATATTCTTGTGT+TGG - chr1_4:17815643-17815662 Msa0153860:intron 30.0%
!! TTTAGCTTGTATGTCACAAT+TGG - chr1_4:17815743-17815762 Msa0153860:intron 30.0%
!! TTAGCTTGTATGTCACAATT+GGG - chr1_4:17815744-17815763 Msa0153860:intron 30.0%
!! CTCATGTTTTTAATACATGG+TGG - chr1_4:17815907-17815926 Msa0153860:CDS 30.0%
!! GTTTTTAATACATGGTGGAA+AGG - chr1_4:17815912-17815931 Msa0153860:CDS 30.0%
ACTGCAAGCAATATGAAATT+TGG + chr1_4:17815986-17816005 None:intergenic 30.0%
! AGATTACTGAGCATTTTACT+TGG - chr1_4:17816048-17816067 Msa0153860:CDS 30.0%
! AAACTGAGTTTGTTTGGAGT+TGG + chr1_4:17812196-17812215 None:intergenic 35.0%
! TGTTGGAAACTGAGTTTGTT+TGG + chr1_4:17812202-17812221 None:intergenic 35.0%
!! TCAACTTTTTCTACCTCTGT+TGG + chr1_4:17812219-17812238 None:intergenic 35.0%
ATAGCAGCATTTAGTATTGC+AGG + chr1_4:17812288-17812307 None:intergenic 35.0%
ACAATCTTCATTGGTACGAA+TGG + chr1_4:17812478-17812497 None:intergenic 35.0%
GTTTATGCTCTCTCATCAAT+TGG - chr1_4:17812510-17812529 Msa0153860:CDS 35.0%
TTTGCATTGGATAAAGATGG+AGG - chr1_4:17812540-17812559 Msa0153860:CDS 35.0%
AAACATCATGATATCCACGA+TGG + chr1_4:17812593-17812612 None:intergenic 35.0%
ATCGTGGATATCATGATGTT+TGG - chr1_4:17812592-17812611 Msa0153860:CDS 35.0%
! GTTAACATTCCGGCTTTTTA+TGG - chr1_4:17812814-17812833 Msa0153860:intron 35.0%
GATCTTCTTCCATAAAAAGC+CGG + chr1_4:17812826-17812845 None:intergenic 35.0%
TCATAAAGTTCATGGATCAC+CGG - chr1_4:17812965-17812984 Msa0153860:intron 35.0%
CTGGTCCATTAGAAATGAAA+AGG - chr1_4:17813051-17813070 Msa0153860:intron 35.0%
CACATTAATCTTTGCTTGCA+GGG - chr1_4:17813390-17813409 Msa0153860:intron 35.0%
!! ATGTTTGAAAGTGTTCCAAG+TGG - chr1_4:17813434-17813453 Msa0153860:intron 35.0%
CTCACTAACCTTTAGTAAGA+TGG + chr1_4:17813465-17813484 None:intergenic 35.0%
AGATTCACACACATAATGTG+TGG - chr1_4:17813607-17813626 Msa0153860:intron 35.0%
ACATAATGTGTGGAAAAGTG+CGG - chr1_4:17813617-17813636 Msa0153860:intron 35.0%
ACCAGAGAAATTATGTGCAA+GGG + chr1_4:17813662-17813681 None:intergenic 35.0%
TACCAGAGAAATTATGTGCA+AGG + chr1_4:17813663-17813682 None:intergenic 35.0%
!! TTTTTCAGAGTGGTACAAAG+GGG + chr1_4:17813829-17813848 None:intergenic 35.0%
GTCACGCAACTAAAAAAATG+TGG + chr1_4:17813883-17813902 None:intergenic 35.0%
GTCACGAAACTGAAAAAATG+TGG - chr1_4:17813999-17814018 Msa0153860:intron 35.0%
GGTCACACATAACATACATT+TGG - chr1_4:17814020-17814039 Msa0153860:intron 35.0%
! TACACTCTTTTGTACCACTT+TGG + chr1_4:17814060-17814079 None:intergenic 35.0%
TTGACCAAGTCAAAATCAGA+GGG + chr1_4:17815507-17815526 None:intergenic 35.0%
TTTGACCAAGTCAAAATCAG+AGG + chr1_4:17815506-17815525 None:intergenic 35.0%
!!! ACGTTTTGGAGAAGATGTAA+TGG + chr1_4:17814612-17814631 None:intergenic 35.0%
GTACCTCTGAACATAATTCA+AGG + chr1_4:17814894-17814913 None:intergenic 35.0%
TGTGATGAATTTGAGGGAAT+TGG - chr1_4:17815073-17815092 Msa0153860:intron 35.0%
GTGATGAATTTGAGGGAATT+GGG - chr1_4:17815074-17815093 Msa0153860:intron 35.0%
ATTTGAGGGAATTGGGTTAA+TGG - chr1_4:17815081-17815100 Msa0153860:intron 35.0%
TTTGAGGGAATTGGGTTAAT+GGG - chr1_4:17815082-17815101 Msa0153860:intron 35.0%
!! TTGGTTTGAATTTTGGTGGA+AGG - chr1_4:17815141-17815160 Msa0153860:intron 35.0%
!! GAATTTTGGTGGAAGGAAAA+CGG - chr1_4:17815148-17815167 Msa0153860:intron 35.0%
GGAGAGAAAAAGAGAAGAAA+AGG - chr1_4:17815191-17815210 Msa0153860:intron 35.0%
! TTGAAGAATGGAGTACCTAT+GGG + chr1_4:17815256-17815275 None:intergenic 35.0%
! ATTGAAGAATGGAGTACCTA+TGG + chr1_4:17815257-17815276 None:intergenic 35.0%
GAAGATAGAAGGAAGAAGAA+AGG - chr1_4:17815296-17815315 Msa0153860:CDS 35.0%
GGAAGAAAGAAATAGAAACC+AGG - chr1_4:17815342-17815361 Msa0153860:CDS 35.0%
TTTGACCAAGTCAAAATCAG+AGG - chr1_4:17815506-17815525 Msa0153860:intron 35.0%
TTGACCAAGTCAAAATCAGA+GGG - chr1_4:17815507-17815526 Msa0153860:intron 35.0%
! GAAAGGCTAAAATGCACTTT+TGG + chr1_4:17815629-17815648 None:intergenic 35.0%
! ACAATCACCTTTCCATGTTT+TGG + chr1_4:17815817-17815836 None:intergenic 35.0%
! ACATGGAAAGGTGATTGTTT+TGG - chr1_4:17815819-17815838 Msa0153860:CDS 35.0%
! TAGAGATTTTGCTTGGGTTT+GGG + chr1_4:17815864-17815883 None:intergenic 35.0%
! TTAGAGATTTTGCTTGGGTT+TGG + chr1_4:17815865-17815884 None:intergenic 35.0%
! CATGCTTAGAGATTTTGCTT+GGG + chr1_4:17815870-17815889 None:intergenic 35.0%
! AAACTGAGTTTGTTTGGAGT+TGG + chr1_4:17812196-17812215 None:intergenic 35.0%
! TGTTGGAAACTGAGTTTGTT+TGG + chr1_4:17812202-17812221 None:intergenic 35.0%
!! TCAACTTTTTCTACCTCTGT+TGG + chr1_4:17812219-17812238 None:intergenic 35.0%
ATAGCAGCATTTAGTATTGC+AGG + chr1_4:17812288-17812307 None:intergenic 35.0%
ACAATCTTCATTGGTACGAA+TGG + chr1_4:17812478-17812497 None:intergenic 35.0%
GTTTATGCTCTCTCATCAAT+TGG - chr1_4:17812510-17812529 Msa0153860:CDS 35.0%
TTTGCATTGGATAAAGATGG+AGG - chr1_4:17812540-17812559 Msa0153860:CDS 35.0%
AAACATCATGATATCCACGA+TGG + chr1_4:17812593-17812612 None:intergenic 35.0%
ATCGTGGATATCATGATGTT+TGG - chr1_4:17812592-17812611 Msa0153860:CDS 35.0%
! GTTAACATTCCGGCTTTTTA+TGG - chr1_4:17812814-17812833 Msa0153860:intron 35.0%
GATCTTCTTCCATAAAAAGC+CGG + chr1_4:17812826-17812845 None:intergenic 35.0%
TCATAAAGTTCATGGATCAC+CGG - chr1_4:17812965-17812984 Msa0153860:intron 35.0%
CTGGTCCATTAGAAATGAAA+AGG - chr1_4:17813051-17813070 Msa0153860:intron 35.0%
CACATTAATCTTTGCTTGCA+GGG - chr1_4:17813390-17813409 Msa0153860:intron 35.0%
!! ATGTTTGAAAGTGTTCCAAG+TGG - chr1_4:17813434-17813453 Msa0153860:intron 35.0%
CTCACTAACCTTTAGTAAGA+TGG + chr1_4:17813465-17813484 None:intergenic 35.0%
AGATTCACACACATAATGTG+TGG - chr1_4:17813607-17813626 Msa0153860:intron 35.0%
ACATAATGTGTGGAAAAGTG+CGG - chr1_4:17813617-17813636 Msa0153860:intron 35.0%
ACCAGAGAAATTATGTGCAA+GGG + chr1_4:17813662-17813681 None:intergenic 35.0%
TACCAGAGAAATTATGTGCA+AGG + chr1_4:17813663-17813682 None:intergenic 35.0%
!! TTTTTCAGAGTGGTACAAAG+GGG + chr1_4:17813829-17813848 None:intergenic 35.0%
GTCACGCAACTAAAAAAATG+TGG + chr1_4:17813883-17813902 None:intergenic 35.0%
GTCACGAAACTGAAAAAATG+TGG - chr1_4:17813999-17814018 Msa0153860:intron 35.0%
GGTCACACATAACATACATT+TGG - chr1_4:17814020-17814039 Msa0153860:intron 35.0%
! TACACTCTTTTGTACCACTT+TGG + chr1_4:17814060-17814079 None:intergenic 35.0%
TTGACCAAGTCAAAATCAGA+GGG + chr1_4:17815507-17815526 None:intergenic 35.0%
TTTGACCAAGTCAAAATCAG+AGG + chr1_4:17815506-17815525 None:intergenic 35.0%
!!! ACGTTTTGGAGAAGATGTAA+TGG + chr1_4:17814612-17814631 None:intergenic 35.0%
GTACCTCTGAACATAATTCA+AGG + chr1_4:17814894-17814913 None:intergenic 35.0%
TGTGATGAATTTGAGGGAAT+TGG - chr1_4:17815073-17815092 Msa0153860:intron 35.0%
GTGATGAATTTGAGGGAATT+GGG - chr1_4:17815074-17815093 Msa0153860:intron 35.0%
ATTTGAGGGAATTGGGTTAA+TGG - chr1_4:17815081-17815100 Msa0153860:intron 35.0%
TTTGAGGGAATTGGGTTAAT+GGG - chr1_4:17815082-17815101 Msa0153860:intron 35.0%
!! TTGGTTTGAATTTTGGTGGA+AGG - chr1_4:17815141-17815160 Msa0153860:intron 35.0%
!! GAATTTTGGTGGAAGGAAAA+CGG - chr1_4:17815148-17815167 Msa0153860:intron 35.0%
GGAGAGAAAAAGAGAAGAAA+AGG - chr1_4:17815191-17815210 Msa0153860:intron 35.0%
! TTGAAGAATGGAGTACCTAT+GGG + chr1_4:17815256-17815275 None:intergenic 35.0%
! ATTGAAGAATGGAGTACCTA+TGG + chr1_4:17815257-17815276 None:intergenic 35.0%
GAAGATAGAAGGAAGAAGAA+AGG - chr1_4:17815296-17815315 Msa0153860:CDS 35.0%
GGAAGAAAGAAATAGAAACC+AGG - chr1_4:17815342-17815361 Msa0153860:CDS 35.0%
TTTGACCAAGTCAAAATCAG+AGG - chr1_4:17815506-17815525 Msa0153860:intron 35.0%
TTGACCAAGTCAAAATCAGA+GGG - chr1_4:17815507-17815526 Msa0153860:intron 35.0%
! GAAAGGCTAAAATGCACTTT+TGG + chr1_4:17815629-17815648 None:intergenic 35.0%
! ACAATCACCTTTCCATGTTT+TGG + chr1_4:17815817-17815836 None:intergenic 35.0%
! ACATGGAAAGGTGATTGTTT+TGG - chr1_4:17815819-17815838 Msa0153860:CDS 35.0%
! TAGAGATTTTGCTTGGGTTT+GGG + chr1_4:17815864-17815883 None:intergenic 35.0%
! TTAGAGATTTTGCTTGGGTT+TGG + chr1_4:17815865-17815884 None:intergenic 35.0%
! CATGCTTAGAGATTTTGCTT+GGG + chr1_4:17815870-17815889 None:intergenic 35.0%
ACAAACTCAGTTTCCAACAG+AGG - chr1_4:17812203-17812222 Msa0153860:three_prime_UTR 40.0%
TCCAAATCAACACCCTGAAT+TGG - chr1_4:17812395-17812414 Msa0153860:CDS 40.0%
! TGAACGTATGTTGACTGTGT+TGG - chr1_4:17812428-17812447 Msa0153860:CDS 40.0%
GATAAAGATGGAGGCTCTTT+GGG - chr1_4:17812549-17812568 Msa0153860:CDS 40.0%
AACAAAGCAATGGCTCAATC+TGG - chr1_4:17813032-17813051 Msa0153860:intron 40.0%
! GTCTCAACACTAGTTGATGT+AGG - chr1_4:17813104-17813123 Msa0153860:intron 40.0%
! TCAACACTAGTTGATGTAGG+TGG - chr1_4:17813107-17813126 Msa0153860:intron 40.0%
GCACATTAATCTTTGCTTGC+AGG - chr1_4:17813389-17813408 Msa0153860:intron 40.0%
! TGGTGATGCCATCTTACTAA+AGG - chr1_4:17813454-17813473 Msa0153860:intron 40.0%
AAGGTTAGTGAGTACATGAG+AGG - chr1_4:17813473-17813492 Msa0153860:intron 40.0%
AGGTTAGTGAGTACATGAGA+GGG - chr1_4:17813474-17813493 Msa0153860:intron 40.0%
! CAAAGGGGTGTACACATTAA+GGG + chr1_4:17813814-17813833 None:intergenic 40.0%
! ACAAAGGGGTGTACACATTA+AGG + chr1_4:17813815-17813834 None:intergenic 40.0%
TTGCAAAAGGGGGTAAAGTT+GGG + chr1_4:17815540-17815559 None:intergenic 40.0%
TGACCAAGTCAAAATCAGAG+GGG + chr1_4:17815508-17815527 None:intergenic 40.0%
!!! TTTTGACTTGGTCAAAGCAG+AGG - chr1_4:17814326-17814345 Msa0153860:intron 40.0%
TAGTGAAGAGAGAAACGATG+AGG + chr1_4:17814477-17814496 None:intergenic 40.0%
TGTGTTTGAAGATGAGTGAG+TGG + chr1_4:17814834-17814853 None:intergenic 40.0%
GGTCCTTGAATTATGTTCAG+AGG - chr1_4:17814888-17814907 Msa0153860:intron 40.0%
ATGAAGATCTGGAAACGAGA+GGG + chr1_4:17815016-17815035 None:intergenic 40.0%
! AATGGGTATGGTGATGAAGA+TGG - chr1_4:17815099-17815118 Msa0153860:intron 40.0%
ATGAAGATGGTGCATGAAGT+TGG - chr1_4:17815112-17815131 Msa0153860:intron 40.0%
!!! TGCATGAAGTTGGTGAGTTT+TGG - chr1_4:17815122-17815141 Msa0153860:intron 40.0%
TTCTTCCCTCTGTTCTTTCA+CGG + chr1_4:17815329-17815348 None:intergenic 40.0%
! CGGCTCAGATTCCTTTTAAT+TGG - chr1_4:17815385-17815404 Msa0153860:CDS 40.0%
!!! TTTTGACTTGGTCAAAGCAG+AGG + chr1_4:17814326-17814345 None:intergenic 40.0%
TGACCAAGTCAAAATCAGAG+GGG - chr1_4:17815508-17815527 Msa0153860:intron 40.0%
TTGCAAAAGGGGGTAAAGTT+GGG - chr1_4:17815540-17815559 Msa0153860:intron 40.0%
CACAAAGCTTTGCCAAAACA+TGG - chr1_4:17815802-17815821 Msa0153860:CDS 40.0%
AGCTTTGCCAAAACATGGAA+AGG - chr1_4:17815807-17815826 Msa0153860:CDS 40.0%
! GCATGCTTAGAGATTTTGCT+TGG + chr1_4:17815871-17815890 None:intergenic 40.0%
CAAAACTTATGCATGAGCTC+TGG - chr1_4:17815955-17815974 Msa0153860:CDS 40.0%
AGTGATATCTCAGCTATGTC+TGG - chr1_4:17816003-17816022 Msa0153860:CDS 40.0%
ACAAACTCAGTTTCCAACAG+AGG - chr1_4:17812203-17812222 Msa0153860:three_prime_UTR 40.0%
TCCAAATCAACACCCTGAAT+TGG - chr1_4:17812395-17812414 Msa0153860:CDS 40.0%
! TGAACGTATGTTGACTGTGT+TGG - chr1_4:17812428-17812447 Msa0153860:CDS 40.0%
GATAAAGATGGAGGCTCTTT+GGG - chr1_4:17812549-17812568 Msa0153860:CDS 40.0%
AACAAAGCAATGGCTCAATC+TGG - chr1_4:17813032-17813051 Msa0153860:intron 40.0%
! GTCTCAACACTAGTTGATGT+AGG - chr1_4:17813104-17813123 Msa0153860:intron 40.0%
! TCAACACTAGTTGATGTAGG+TGG - chr1_4:17813107-17813126 Msa0153860:intron 40.0%
GCACATTAATCTTTGCTTGC+AGG - chr1_4:17813389-17813408 Msa0153860:intron 40.0%
! TGGTGATGCCATCTTACTAA+AGG - chr1_4:17813454-17813473 Msa0153860:intron 40.0%
AAGGTTAGTGAGTACATGAG+AGG - chr1_4:17813473-17813492 Msa0153860:intron 40.0%
AGGTTAGTGAGTACATGAGA+GGG - chr1_4:17813474-17813493 Msa0153860:intron 40.0%
! CAAAGGGGTGTACACATTAA+GGG + chr1_4:17813814-17813833 None:intergenic 40.0%
! ACAAAGGGGTGTACACATTA+AGG + chr1_4:17813815-17813834 None:intergenic 40.0%
TTGCAAAAGGGGGTAAAGTT+GGG + chr1_4:17815540-17815559 None:intergenic 40.0%
TGACCAAGTCAAAATCAGAG+GGG + chr1_4:17815508-17815527 None:intergenic 40.0%
!!! TTTTGACTTGGTCAAAGCAG+AGG - chr1_4:17814326-17814345 Msa0153860:intron 40.0%
TAGTGAAGAGAGAAACGATG+AGG + chr1_4:17814477-17814496 None:intergenic 40.0%
TGTGTTTGAAGATGAGTGAG+TGG + chr1_4:17814834-17814853 None:intergenic 40.0%
GGTCCTTGAATTATGTTCAG+AGG - chr1_4:17814888-17814907 Msa0153860:intron 40.0%
ATGAAGATCTGGAAACGAGA+GGG + chr1_4:17815016-17815035 None:intergenic 40.0%
! AATGGGTATGGTGATGAAGA+TGG - chr1_4:17815099-17815118 Msa0153860:intron 40.0%
ATGAAGATGGTGCATGAAGT+TGG - chr1_4:17815112-17815131 Msa0153860:intron 40.0%
!!! TGCATGAAGTTGGTGAGTTT+TGG - chr1_4:17815122-17815141 Msa0153860:intron 40.0%
TTCTTCCCTCTGTTCTTTCA+CGG + chr1_4:17815329-17815348 None:intergenic 40.0%
! CGGCTCAGATTCCTTTTAAT+TGG - chr1_4:17815385-17815404 Msa0153860:CDS 40.0%
!!! TTTTGACTTGGTCAAAGCAG+AGG + chr1_4:17814326-17814345 None:intergenic 40.0%
TGACCAAGTCAAAATCAGAG+GGG - chr1_4:17815508-17815527 Msa0153860:intron 40.0%
TTGCAAAAGGGGGTAAAGTT+GGG - chr1_4:17815540-17815559 Msa0153860:intron 40.0%
CACAAAGCTTTGCCAAAACA+TGG - chr1_4:17815802-17815821 Msa0153860:CDS 40.0%
AGCTTTGCCAAAACATGGAA+AGG - chr1_4:17815807-17815826 Msa0153860:CDS 40.0%
! GCATGCTTAGAGATTTTGCT+TGG + chr1_4:17815871-17815890 None:intergenic 40.0%
CAAAACTTATGCATGAGCTC+TGG - chr1_4:17815955-17815974 Msa0153860:CDS 40.0%
AGTGATATCTCAGCTATGTC+TGG - chr1_4:17816003-17816022 Msa0153860:CDS 40.0%
!! GCCAATTCAGGGTGTTGATT+TGG + chr1_4:17812399-17812418 None:intergenic 45.0%
GGATAAAGATGGAGGCTCTT+TGG - chr1_4:17812548-17812567 Msa0153860:CDS 45.0%
!! CGATGGATTAATGCTGAGAG+TGG + chr1_4:17812576-17812595 None:intergenic 45.0%
CTCTCAGCATTAATCCATCG+TGG - chr1_4:17812576-17812595 Msa0153860:CDS 45.0%
! ACACTAGTTGATGTAGGTGG+TGG - chr1_4:17813110-17813129 Msa0153860:intron 45.0%
!! TTGATGTAGGTGGTGGAGTA+GGG - chr1_4:17813117-17813136 Msa0153860:intron 45.0%
TGGTGCATCTTGAACCACTT+GGG + chr1_4:17813204-17813223 None:intergenic 45.0%
TTGGTGCATCTTGAACCACT+TGG + chr1_4:17813205-17813224 None:intergenic 45.0%
AGTAAGATGGCATCACCACT+TGG + chr1_4:17813452-17813471 None:intergenic 45.0%
! TGTGGAAAAGTGCGGAATCT+GGG - chr1_4:17813625-17813644 Msa0153860:intron 45.0%
GCCCTTGCACATAATTTCTC+TGG - chr1_4:17813658-17813677 Msa0153860:intron 45.0%
! GCACTTTTGACCCCTAAGTT+TGG - chr1_4:17814214-17814233 Msa0153860:intron 45.0%
TGCAAAAGGGGGTAAAGTTG+GGG + chr1_4:17815541-17815560 None:intergenic 45.0%
GTTGCAAAAGGGGGTAAAGT+TGG + chr1_4:17815539-17815558 None:intergenic 45.0%
! TACCCCCTTTTGCAACTCAT+AGG - chr1_4:17814293-17814312 Msa0153860:intron 45.0%
GACCTATGAGTTGCAAAAGG+GGG + chr1_4:17815530-17815549 None:intergenic 45.0%
GGACCTATGAGTTGCAAAAG+GGG + chr1_4:17815529-17815548 None:intergenic 45.0%
GGGACCTATGAGTTGCAAAA+GGG + chr1_4:17815528-17815547 None:intergenic 45.0%
AAGCAGAGGTGACCAATAGA+TGG - chr1_4:17814340-17814359 Msa0153860:intron 45.0%
AAGAGAGAAACGATGAGGTG+GGG + chr1_4:17814472-17814491 None:intergenic 45.0%
GAAGAGAGAAACGATGAGGT+GGG + chr1_4:17814473-17814492 None:intergenic 45.0%
TGAAGAGAGAAACGATGAGG+TGG + chr1_4:17814474-17814493 None:intergenic 45.0%
! TGTTGTGCTGTGGTGTTTTG+GGG + chr1_4:17814553-17814572 None:intergenic 45.0%
! GTGTTGTGCTGTGGTGTTTT+GGG + chr1_4:17814554-17814573 None:intergenic 45.0%
! TGTGTTGTGCTGTGGTGTTT+TGG + chr1_4:17814555-17814574 None:intergenic 45.0%
AAGGTTGTTGTGTTGTGCTG+TGG + chr1_4:17814563-17814582 None:intergenic 45.0%
! ACAAGTGCCGTTACACAGTA+TGG - chr1_4:17814938-17814957 Msa0153860:CDS 45.0%
ATCCTGGCCATACTGTGTAA+CGG + chr1_4:17814948-17814967 None:intergenic 45.0%
CATGAAGATCTGGAAACGAG+AGG + chr1_4:17815017-17815036 None:intergenic 45.0%
! GGGAATTGGGTTAATGGGTA+TGG - chr1_4:17815087-17815106 Msa0153860:intron 45.0%
AAACTGCCGTGAAAGAACAG+AGG - chr1_4:17815320-17815339 Msa0153860:CDS 45.0%
AACTGCCGTGAAAGAACAGA+GGG - chr1_4:17815321-17815340 Msa0153860:CDS 45.0%
CGAAAAGACTTAAATGCCCC+TGG + chr1_4:17815363-17815382 None:intergenic 45.0%
! GGCATTTAAGTCTTTTCGCG+CGG - chr1_4:17815365-17815384 Msa0153860:CDS 45.0%
AAGCAGAGGTGACCAATAGA+TGG + chr1_4:17814340-17814359 None:intergenic 45.0%
GGGACCTATGAGTTGCAAAA+GGG - chr1_4:17815528-17815547 Msa0153860:intron 45.0%
GGACCTATGAGTTGCAAAAG+GGG - chr1_4:17815529-17815548 Msa0153860:intron 45.0%
GACCTATGAGTTGCAAAAGG+GGG - chr1_4:17815530-17815549 Msa0153860:intron 45.0%
! TACCCCCTTTTGCAACTCAT+AGG + chr1_4:17814293-17814312 None:intergenic 45.0%
GTTGCAAAAGGGGGTAAAGT+TGG - chr1_4:17815539-17815558 Msa0153860:intron 45.0%
TGCAAAAGGGGGTAAAGTTG+GGG - chr1_4:17815541-17815560 Msa0153860:intron 45.0%
! CACTTTTGGTCCCCTAAGTT+TGG + chr1_4:17815615-17815634 None:intergenic 45.0%
! CTCAGCTATGTCTGGAGTAA+TGG - chr1_4:17816011-17816030 Msa0153860:CDS 45.0%
!! GCCAATTCAGGGTGTTGATT+TGG + chr1_4:17812399-17812418 None:intergenic 45.0%
GGATAAAGATGGAGGCTCTT+TGG - chr1_4:17812548-17812567 Msa0153860:CDS 45.0%
!! CGATGGATTAATGCTGAGAG+TGG + chr1_4:17812576-17812595 None:intergenic 45.0%
CTCTCAGCATTAATCCATCG+TGG - chr1_4:17812576-17812595 Msa0153860:CDS 45.0%
! ACACTAGTTGATGTAGGTGG+TGG - chr1_4:17813110-17813129 Msa0153860:intron 45.0%
!! TTGATGTAGGTGGTGGAGTA+GGG - chr1_4:17813117-17813136 Msa0153860:intron 45.0%
TGGTGCATCTTGAACCACTT+GGG + chr1_4:17813204-17813223 None:intergenic 45.0%
TTGGTGCATCTTGAACCACT+TGG + chr1_4:17813205-17813224 None:intergenic 45.0%
AGTAAGATGGCATCACCACT+TGG + chr1_4:17813452-17813471 None:intergenic 45.0%
! TGTGGAAAAGTGCGGAATCT+GGG - chr1_4:17813625-17813644 Msa0153860:intron 45.0%
GCCCTTGCACATAATTTCTC+TGG - chr1_4:17813658-17813677 Msa0153860:intron 45.0%
! GCACTTTTGACCCCTAAGTT+TGG - chr1_4:17814214-17814233 Msa0153860:intron 45.0%
TGCAAAAGGGGGTAAAGTTG+GGG + chr1_4:17815541-17815560 None:intergenic 45.0%
GTTGCAAAAGGGGGTAAAGT+TGG + chr1_4:17815539-17815558 None:intergenic 45.0%
! TACCCCCTTTTGCAACTCAT+AGG - chr1_4:17814293-17814312 Msa0153860:intron 45.0%
GACCTATGAGTTGCAAAAGG+GGG + chr1_4:17815530-17815549 None:intergenic 45.0%
GGACCTATGAGTTGCAAAAG+GGG + chr1_4:17815529-17815548 None:intergenic 45.0%
GGGACCTATGAGTTGCAAAA+GGG + chr1_4:17815528-17815547 None:intergenic 45.0%
AAGCAGAGGTGACCAATAGA+TGG - chr1_4:17814340-17814359 Msa0153860:intron 45.0%
AAGAGAGAAACGATGAGGTG+GGG + chr1_4:17814472-17814491 None:intergenic 45.0%
GAAGAGAGAAACGATGAGGT+GGG + chr1_4:17814473-17814492 None:intergenic 45.0%
TGAAGAGAGAAACGATGAGG+TGG + chr1_4:17814474-17814493 None:intergenic 45.0%
! TGTTGTGCTGTGGTGTTTTG+GGG + chr1_4:17814553-17814572 None:intergenic 45.0%
! GTGTTGTGCTGTGGTGTTTT+GGG + chr1_4:17814554-17814573 None:intergenic 45.0%
! TGTGTTGTGCTGTGGTGTTT+TGG + chr1_4:17814555-17814574 None:intergenic 45.0%
AAGGTTGTTGTGTTGTGCTG+TGG + chr1_4:17814563-17814582 None:intergenic 45.0%
! ACAAGTGCCGTTACACAGTA+TGG - chr1_4:17814938-17814957 Msa0153860:CDS 45.0%
ATCCTGGCCATACTGTGTAA+CGG + chr1_4:17814948-17814967 None:intergenic 45.0%
CATGAAGATCTGGAAACGAG+AGG + chr1_4:17815017-17815036 None:intergenic 45.0%
! GGGAATTGGGTTAATGGGTA+TGG - chr1_4:17815087-17815106 Msa0153860:intron 45.0%
AAACTGCCGTGAAAGAACAG+AGG - chr1_4:17815320-17815339 Msa0153860:CDS 45.0%
AACTGCCGTGAAAGAACAGA+GGG - chr1_4:17815321-17815340 Msa0153860:CDS 45.0%
CGAAAAGACTTAAATGCCCC+TGG + chr1_4:17815363-17815382 None:intergenic 45.0%
! GGCATTTAAGTCTTTTCGCG+CGG - chr1_4:17815365-17815384 Msa0153860:CDS 45.0%
AAGCAGAGGTGACCAATAGA+TGG + chr1_4:17814340-17814359 None:intergenic 45.0%
GGGACCTATGAGTTGCAAAA+GGG - chr1_4:17815528-17815547 Msa0153860:intron 45.0%
GGACCTATGAGTTGCAAAAG+GGG - chr1_4:17815529-17815548 Msa0153860:intron 45.0%
GACCTATGAGTTGCAAAAGG+GGG - chr1_4:17815530-17815549 Msa0153860:intron 45.0%
! TACCCCCTTTTGCAACTCAT+AGG + chr1_4:17814293-17814312 None:intergenic 45.0%
GTTGCAAAAGGGGGTAAAGT+TGG - chr1_4:17815539-17815558 Msa0153860:intron 45.0%
TGCAAAAGGGGGTAAAGTTG+GGG - chr1_4:17815541-17815560 Msa0153860:intron 45.0%
! CACTTTTGGTCCCCTAAGTT+TGG + chr1_4:17815615-17815634 None:intergenic 45.0%
! CTCAGCTATGTCTGGAGTAA+TGG - chr1_4:17816011-17816030 Msa0153860:CDS 45.0%
!! ATAAAAAAAAAGAATTAAAA+AGG - chr1_4:17814440-17814459 Msa0153860:intron 5.0%
!! ATAAAAAAAAAGAATTAAAA+AGG - chr1_4:17814440-17814459 Msa0153860:intron 5.0%
AACACCCTGAATTGGCTGAG+AGG - chr1_4:17812403-17812422 Msa0153860:CDS 50.0%
CAAGCCTCTCAGCCAATTCA+GGG + chr1_4:17812410-17812429 None:intergenic 50.0%
TCAAGCCTCTCAGCCAATTC+AGG + chr1_4:17812411-17812430 None:intergenic 50.0%
!! GTTGATGTAGGTGGTGGAGT+AGG - chr1_4:17813116-17813135 Msa0153860:intron 50.0%
GGTGCATCTTGAACCACTTG+GGG + chr1_4:17813203-17813222 None:intergenic 50.0%
CAAGATGCACCAACTCATCC+AGG - chr1_4:17813212-17813231 Msa0153860:intron 50.0%
GCAGGGATAGAGCATGTTGA+AGG - chr1_4:17813407-17813426 Msa0153860:intron 50.0%
! GTGTGGAAAAGTGCGGAATC+TGG - chr1_4:17813624-17813643 Msa0153860:intron 50.0%
! GTGGAAAAGTGCGGAATCTG+GGG - chr1_4:17813626-17813645 Msa0153860:intron 50.0%
TTTGACCCCTAAGTTTGGCC+AGG - chr1_4:17814219-17814238 Msa0153860:intron 50.0%
TTGACCCCTAAGTTTGGCCA+GGG - chr1_4:17814220-17814239 Msa0153860:intron 50.0%
CAAAAGGGGGTAAAGTTGGG+GGG + chr1_4:17815543-17815562 None:intergenic 50.0%
GCAAAAGGGGGTAAAGTTGG+GGG + chr1_4:17815542-17815561 None:intergenic 50.0%
GGGGACCTATGAGTTGCAAA+AGG + chr1_4:17815527-17815546 None:intergenic 50.0%
!!! GGTCCCCTCTGATTTTGACT+TGG - chr1_4:17814314-17814333 Msa0153860:intron 50.0%
GCAAGCTTCTTGTGCTGTGA+TGG + chr1_4:17814524-17814543 None:intergenic 50.0%
GTATGGCCAGGATTACTCTC+CGG - chr1_4:17814955-17814974 Msa0153860:CDS 50.0%
TGGAAACGAGAGGGTGAATC+CGG + chr1_4:17815007-17815026 None:intergenic 50.0%
!!! GGTCCCCTCTGATTTTGACT+TGG + chr1_4:17814314-17814333 None:intergenic 50.0%
GGGGACCTATGAGTTGCAAA+AGG - chr1_4:17815527-17815546 Msa0153860:intron 50.0%
GCAAAAGGGGGTAAAGTTGG+GGG - chr1_4:17815542-17815561 Msa0153860:intron 50.0%
CAAAAGGGGGTAAAGTTGGG+GGG - chr1_4:17815543-17815562 Msa0153860:intron 50.0%
AACACCCTGAATTGGCTGAG+AGG - chr1_4:17812403-17812422 Msa0153860:CDS 50.0%
CAAGCCTCTCAGCCAATTCA+GGG + chr1_4:17812410-17812429 None:intergenic 50.0%
TCAAGCCTCTCAGCCAATTC+AGG + chr1_4:17812411-17812430 None:intergenic 50.0%
!! GTTGATGTAGGTGGTGGAGT+AGG - chr1_4:17813116-17813135 Msa0153860:intron 50.0%
GGTGCATCTTGAACCACTTG+GGG + chr1_4:17813203-17813222 None:intergenic 50.0%
CAAGATGCACCAACTCATCC+AGG - chr1_4:17813212-17813231 Msa0153860:intron 50.0%
GCAGGGATAGAGCATGTTGA+AGG - chr1_4:17813407-17813426 Msa0153860:intron 50.0%
! GTGTGGAAAAGTGCGGAATC+TGG - chr1_4:17813624-17813643 Msa0153860:intron 50.0%
! GTGGAAAAGTGCGGAATCTG+GGG - chr1_4:17813626-17813645 Msa0153860:intron 50.0%
TTTGACCCCTAAGTTTGGCC+AGG - chr1_4:17814219-17814238 Msa0153860:intron 50.0%
TTGACCCCTAAGTTTGGCCA+GGG - chr1_4:17814220-17814239 Msa0153860:intron 50.0%
CAAAAGGGGGTAAAGTTGGG+GGG + chr1_4:17815543-17815562 None:intergenic 50.0%
GCAAAAGGGGGTAAAGTTGG+GGG + chr1_4:17815542-17815561 None:intergenic 50.0%
GGGGACCTATGAGTTGCAAA+AGG + chr1_4:17815527-17815546 None:intergenic 50.0%
!!! GGTCCCCTCTGATTTTGACT+TGG - chr1_4:17814314-17814333 Msa0153860:intron 50.0%
GCAAGCTTCTTGTGCTGTGA+TGG + chr1_4:17814524-17814543 None:intergenic 50.0%
GTATGGCCAGGATTACTCTC+CGG - chr1_4:17814955-17814974 Msa0153860:CDS 50.0%
TGGAAACGAGAGGGTGAATC+CGG + chr1_4:17815007-17815026 None:intergenic 50.0%
!!! GGTCCCCTCTGATTTTGACT+TGG + chr1_4:17814314-17814333 None:intergenic 50.0%
GGGGACCTATGAGTTGCAAA+AGG - chr1_4:17815527-17815546 Msa0153860:intron 50.0%
GCAAAAGGGGGTAAAGTTGG+GGG - chr1_4:17815542-17815561 Msa0153860:intron 50.0%
CAAAAGGGGGTAAAGTTGGG+GGG - chr1_4:17815543-17815562 Msa0153860:intron 50.0%
TCGCTCCCTGGCCAAACTTA+GGG + chr1_4:17815601-17815620 None:intergenic 55.0%
ATCGCTCCCTGGCCAAACTT+AGG + chr1_4:17815600-17815619 None:intergenic 55.0%
! GTTTGGCCAGGGAGCGATTT+TGG - chr1_4:17814231-17814250 Msa0153860:intron 55.0%
AAAGTTGGGGGGCTGGAAAG+TGG + chr1_4:17815554-17815573 None:intergenic 55.0%
GTCACGTGGCGTCCATCTAT+TGG + chr1_4:17814355-17814374 None:intergenic 55.0%
TGCCGTTACACAGTATGGCC+AGG - chr1_4:17814943-17814962 Msa0153860:CDS 55.0%
AAACGAGAGGGTGAATCCGG+TGG + chr1_4:17815004-17815023 None:intergenic 55.0%
! CACGTGAGGGCATGAAGATC+TGG + chr1_4:17815027-17815046 None:intergenic 55.0%
ACCAATAGATGGACGCCACG+TGG + chr1_4:17814351-17814370 None:intergenic 55.0%
AAAGTTGGGGGGCTGGAAAG+TGG - chr1_4:17815554-17815573 Msa0153860:intron 55.0%
! GTTTGGCCAGGGAGCGATTT+TGG + chr1_4:17814231-17814250 None:intergenic 55.0%
ATCGCTCCCTGGCCAAACTT+AGG - chr1_4:17815600-17815619 Msa0153860:intron 55.0%
TCGCTCCCTGGCCAAACTTA+GGG - chr1_4:17815601-17815620 Msa0153860:intron 55.0%
TGGTCCCCTAAGTTTGGCCA+GGG + chr1_4:17815609-17815628 None:intergenic 55.0%
TTGGTCCCCTAAGTTTGGCC+AGG + chr1_4:17815610-17815629 None:intergenic 55.0%
! TTGCTTGGGTTTGGGACCTC+AGG + chr1_4:17815856-17815875 None:intergenic 55.0%
TCGCTCCCTGGCCAAACTTA+GGG + chr1_4:17815601-17815620 None:intergenic 55.0%
ATCGCTCCCTGGCCAAACTT+AGG + chr1_4:17815600-17815619 None:intergenic 55.0%
! GTTTGGCCAGGGAGCGATTT+TGG - chr1_4:17814231-17814250 Msa0153860:intron 55.0%
AAAGTTGGGGGGCTGGAAAG+TGG + chr1_4:17815554-17815573 None:intergenic 55.0%
GTCACGTGGCGTCCATCTAT+TGG + chr1_4:17814355-17814374 None:intergenic 55.0%
TGCCGTTACACAGTATGGCC+AGG - chr1_4:17814943-17814962 Msa0153860:CDS 55.0%
AAACGAGAGGGTGAATCCGG+TGG + chr1_4:17815004-17815023 None:intergenic 55.0%
! CACGTGAGGGCATGAAGATC+TGG + chr1_4:17815027-17815046 None:intergenic 55.0%
ACCAATAGATGGACGCCACG+TGG + chr1_4:17814351-17814370 None:intergenic 55.0%
AAAGTTGGGGGGCTGGAAAG+TGG - chr1_4:17815554-17815573 Msa0153860:intron 55.0%
! GTTTGGCCAGGGAGCGATTT+TGG + chr1_4:17814231-17814250 None:intergenic 55.0%
ATCGCTCCCTGGCCAAACTT+AGG - chr1_4:17815600-17815619 Msa0153860:intron 55.0%
TCGCTCCCTGGCCAAACTTA+GGG - chr1_4:17815601-17815620 Msa0153860:intron 55.0%
TGGTCCCCTAAGTTTGGCCA+GGG + chr1_4:17815609-17815628 None:intergenic 55.0%
TTGGTCCCCTAAGTTTGGCC+AGG + chr1_4:17815610-17815629 None:intergenic 55.0%
! TTGCTTGGGTTTGGGACCTC+AGG + chr1_4:17815856-17815875 None:intergenic 55.0%
CGCTCCCTGGCCAAACTTAG+GGG + chr1_4:17815602-17815621 None:intergenic 60.0%
! GTAGCGCCGGAGAGTAATCC+TGG + chr1_4:17814964-17814983 None:intergenic 60.0%
!! GTGAATCCGGTGGTGGGTAG+CGG + chr1_4:17814994-17815013 None:intergenic 60.0%
GAGAGGGTGAATCCGGTGGT+GGG + chr1_4:17815000-17815019 None:intergenic 60.0%
! AATCCGGTGGTGGCACGTGA+GGG + chr1_4:17815040-17815059 None:intergenic 60.0%
! AAATCCGGTGGTGGCACGTG+AGG + chr1_4:17815041-17815060 None:intergenic 60.0%
GCCACGTGGCGTCCATCTAT+TGG - chr1_4:17815473-17815492 Msa0153860:intron 60.0%
CGCTCCCTGGCCAAACTTAG+GGG - chr1_4:17815602-17815621 Msa0153860:intron 60.0%
CGCTCCCTGGCCAAACTTAG+GGG + chr1_4:17815602-17815621 None:intergenic 60.0%
! GTAGCGCCGGAGAGTAATCC+TGG + chr1_4:17814964-17814983 None:intergenic 60.0%
!! GTGAATCCGGTGGTGGGTAG+CGG + chr1_4:17814994-17815013 None:intergenic 60.0%
GAGAGGGTGAATCCGGTGGT+GGG + chr1_4:17815000-17815019 None:intergenic 60.0%
! AATCCGGTGGTGGCACGTGA+GGG + chr1_4:17815040-17815059 None:intergenic 60.0%
! AAATCCGGTGGTGGCACGTG+AGG + chr1_4:17815041-17815060 None:intergenic 60.0%
GCCACGTGGCGTCCATCTAT+TGG - chr1_4:17815473-17815492 Msa0153860:intron 60.0%
CGCTCCCTGGCCAAACTTAG+GGG - chr1_4:17815602-17815621 Msa0153860:intron 60.0%
AGGGGGCCAAAATCGCTCCC+TGG + chr1_4:17815589-17815608 None:intergenic 65.0%
AGGGGGTAAAGTTGGGGGGC+TGG + chr1_4:17815547-17815566 None:intergenic 65.0%
TAGCGGCGGTGAAGTAGCGC+CGG + chr1_4:17814977-17814996 None:intergenic 65.0%
!! AATCCGGTGGTGGGTAGCGG+CGG + chr1_4:17814991-17815010 None:intergenic 65.0%
CGAGAGGGTGAATCCGGTGG+TGG + chr1_4:17815001-17815020 None:intergenic 65.0%
ATGCCCTCACGTGCCACCAC+CGG - chr1_4:17815034-17815053 Msa0153860:intron 65.0%
AGGGGGTAAAGTTGGGGGGC+TGG - chr1_4:17815547-17815566 Msa0153860:intron 65.0%
AGGGGGCCAAAATCGCTCCC+TGG - chr1_4:17815589-17815608 Msa0153860:intron 65.0%
AGGGGGCCAAAATCGCTCCC+TGG + chr1_4:17815589-17815608 None:intergenic 65.0%
AGGGGGTAAAGTTGGGGGGC+TGG + chr1_4:17815547-17815566 None:intergenic 65.0%
TAGCGGCGGTGAAGTAGCGC+CGG + chr1_4:17814977-17814996 None:intergenic 65.0%
!! AATCCGGTGGTGGGTAGCGG+CGG + chr1_4:17814991-17815010 None:intergenic 65.0%
CGAGAGGGTGAATCCGGTGG+TGG + chr1_4:17815001-17815020 None:intergenic 65.0%
ATGCCCTCACGTGCCACCAC+CGG - chr1_4:17815034-17815053 Msa0153860:intron 65.0%
AGGGGGTAAAGTTGGGGGGC+TGG - chr1_4:17815547-17815566 Msa0153860:intron 65.0%
AGGGGGCCAAAATCGCTCCC+TGG - chr1_4:17815589-17815608 Msa0153860:intron 65.0%
TCACCGCCGCTACCCACCAC+CGG - chr1_4:17814985-17815004 Msa0153860:intron 70.0%
TCACCGCCGCTACCCACCAC+CGG - chr1_4:17814985-17815004 Msa0153860:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 17812139 17816256 17812139 ID=Msa0153860;Name=Msa0153860
chr1_4 mRNA 17812139 17816256 17812139 ID=Msa0153860-mRNA-1;Parent=Msa0153860;Name=Msa0153860-mRNA-1;_AED=0.10;_eAED=0.10;_QI=47|0.66|0.75|1|1|1|4|209|333
chr1_4 exon 17812139 17812647 17812139 ID=Msa0153860-mRNA-1:exon:6704;Parent=Msa0153860-mRNA-1
chr1_4 exon 17814920 17814984 17814920 ID=Msa0153860-mRNA-1:exon:6703;Parent=Msa0153860-mRNA-1
chr1_4 exon 17815270 17815478 17815270 ID=Msa0153860-mRNA-1:exon:6702;Parent=Msa0153860-mRNA-1
chr1_4 exon 17815782 17816256 17815782 ID=Msa0153860-mRNA-1:exon:6701;Parent=Msa0153860-mRNA-1
chr1_4 five_prime_UTR 17816210 17816256 17816210 ID=Msa0153860-mRNA-1:five_prime_utr;Parent=Msa0153860-mRNA-1
chr1_4 CDS 17815782 17816209 17815782 ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1
chr1_4 CDS 17815270 17815478 17815270 ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1
chr1_4 CDS 17814920 17814984 17814920 ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1
chr1_4 CDS 17812348 17812647 17812348 ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1
chr1_4 three_prime_UTR 17812139 17812347 17812139 ID=Msa0153860-mRNA-1:three_prime_utr;Parent=Msa0153860-mRNA-1
Gene Sequence

>Msa0153860

ATGAGTTCCAACTCCAAACAAACTCAGTTTCCAACAGAGGTAGAAAAAGTTGATGATGCTTATCTTTCTGCGTTGTTACTATGTTTTAGTAGGATTTTTCCTGCAATACTAAATGCTGCTATTGATCTCAATTTATTTGATATCATAGCTAAGTTACAAAATTCAAGTGAACATTCTAGTTTTTCTGCTTCTCAAATTGCTTCTCAGCTTCCAAATCAACACCCTGAATTGGCTGAGAGGCTTGAACGTATGTTGACTGTGTTGGCTAGTTACTCTCTTCTCACTTGCTCCATTCGTACCAATGAAGATTGTAAGAAAGAAAGAGTTTATGCTCTCTCATCAATTGGTCAATACTTTGCATTGGATAAAGATGGAGGCTCTTTGGGTCCACTCTCAGCATTAATCCATCGTGGATATCATGATGTTTGGTATGATGTAAAAGATGCAATTATAAACCCTAACAACAATGACCATTTTCATAAAGTTCATGGATCACCGGCTTATAAATATTTGGAGAAAAATCAAGAGCTAAATCAAATTTTTAACAAAGCAATGGCTCAATCTGGTCCATTAGAAATGAAAAGGATTCTTACACTATATAAAGGATTTGAGGGAGTCTCAACACTAGTTGATGTAGGGATAGAGCATGTTGAAGGAAATATGTTTGAAAGTGTTCCAAGTGGTGATGCCATCTTACTAAAGCTTGTATGTCACAATTGGGCAGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTCACAAAGCTTTGCCAAAACATGGAAAGGTGATTGTTTTGGATTATATAATTCCTGAGGTCCCAAACCCAAGCAAAATCTCTAAGCATGCTTGTGCTATTGACAATCTCATGTTTTTAATACATGGTGGAAAGGAAAGAACCGAAAATGAATTTCAAAACTTATGCATGAGCTCTGGATTTTCCAAATTTCATATTGCTTGCAGTGATATCTCAGCTATGTCTGGAGTAATGGAATTCTATAAATAA

Protein sequence

>Msa0153860

MSSNSKQTQFPTEVEKVDDAYLSALLLCFSRIFPAILNAAIDLNLFDIIAKLQNSSEHSSFSASQIASQLPNQHPELAERLERMLTVLASYSLLTCSIRTNEDCKKERVYALSSIGQYFALDKDGGSLGPLSALIHRGYHDVWYDVKDAIINPNNNDHFHKVHGSPAYKYLEKNQELNQIFNKAMAQSGPLEMKRILTLYKGFEGVSTLVDVGIEHVEGNMFESVPSGDAILLKLVCHNWADEECVKFLRNCHKALPKHGKVIVLDYIIPEVPNPSKISKHACAIDNLMFLIHGGKERTENEFQNLCMSSGFSKFHIACSDISAMSGVMEFYK*