Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153860 | sp|P93324|CHOMT_MEDSA | 45.430 | 372 | 152 | 7 | 1 | 333 | 13 | 372 | 2.68e-105 | 315 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153860 | A0A396JUB6 | 86.992 | 369 | 12 | 1 | 1 | 333 | 16 | 384 | 0.0 | 649 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0090380 | Msa0153860 | 0.815342 | 9.710825e-52 | -8.615850e-47 |
Msa0107410 | Msa0153860 | 0.864576 | 1.100697e-64 | -8.615850e-47 |
Msa0137860 | Msa0153860 | 0.803737 | 3.021368e-49 | -8.615850e-47 |
Msa0150620 | Msa0153860 | 0.844778 | 6.122338e-59 | -8.615850e-47 |
Msa0153860 | Msa0186240 | 0.834822 | 2.399395e-56 | -8.615850e-47 |
Msa0153860 | Msa0202380 | 0.820699 | 5.975527e-53 | -8.615850e-47 |
Msa0153860 | Msa0242720 | 0.833480 | 5.205333e-56 | -8.615850e-47 |
Msa0153860 | Msa0246140 | 0.805221 | 1.482199e-49 | -8.615850e-47 |
Msa0153860 | Msa0275730 | 0.801116 | 1.047815e-48 | -8.615850e-47 |
Msa0153860 | Msa0281000 | 0.806768 | 7.007772e-50 | -8.615850e-47 |
Msa0153860 | Msa0299340 | 0.804249 | 2.365467e-49 | -8.615850e-47 |
Msa0153860 | Msa0319680 | 0.810384 | 1.183977e-50 | -8.615850e-47 |
Msa0153860 | Msa0320170 | 0.807363 | 5.243343e-50 | -8.615850e-47 |
Msa0153860 | Msa0324810 | 0.805304 | 1.423816e-49 | -8.615850e-47 |
Msa0153860 | Msa0333770 | 0.800063 | 1.717868e-48 | -8.615850e-47 |
Msa0153860 | Msa0345050 | 0.806756 | 7.046383e-50 | -8.615850e-47 |
Msa0153860 | Msa0345890 | 0.804740 | 1.868029e-49 | -8.615850e-47 |
Msa0153860 | Msa0345980 | 0.820189 | 7.823403e-53 | -8.615850e-47 |
Msa0153860 | Msa0353010 | 0.816254 | 6.079598e-52 | -8.615850e-47 |
Msa0153860 | Msa0367860 | 0.812372 | 4.383642e-51 | -8.615850e-47 |
Msa0153860 | Msa0378320 | 0.814452 | 1.530039e-51 | -8.615850e-47 |
Msa0153860 | Msa0383900 | 0.830602 | 2.676883e-55 | -8.615850e-47 |
Msa0153860 | Msa0393100 | 0.846221 | 2.488242e-59 | -8.615850e-47 |
Msa0153860 | Msa0400010 | 0.821368 | 4.189976e-53 | -8.615850e-47 |
Msa0153860 | Msa0402800 | 0.842637 | 2.290273e-58 | -8.615850e-47 |
Msa0153860 | Msa0421080 | 0.810777 | 9.736374e-51 | -8.615850e-47 |
Msa0153860 | Msa0427660 | 0.803332 | 3.667104e-49 | -8.615850e-47 |
Msa0153860 | Msa0434300 | 0.838185 | 3.341207e-57 | -8.615850e-47 |
Msa0153860 | Msa0434400 | 0.847224 | 1.324268e-59 | -8.615850e-47 |
Msa0153860 | Msa0443450 | 0.803319 | 3.689098e-49 | -8.615850e-47 |
Msa0153860 | Msa0447160 | 0.811395 | 7.152456e-51 | -8.615850e-47 |
Msa0153860 | Msa0449620 | 0.814313 | 1.642207e-51 | -8.615850e-47 |
Msa0153860 | Msa0460600 | 0.818070 | 2.374299e-52 | -8.615850e-47 |
Msa0153860 | Msa0478080 | 0.829286 | 5.603095e-55 | -8.615850e-47 |
Msa0153860 | Msa0480530 | 0.816581 | 5.137875e-52 | -8.615850e-47 |
Msa0153860 | Msa0480540 | 0.831536 | 1.578746e-55 | -8.615850e-47 |
Msa0153860 | Msa0480550 | 0.835287 | 1.831700e-56 | -8.615850e-47 |
Msa0153860 | Msa0488580 | 0.849731 | 2.679547e-60 | -8.615850e-47 |
Msa0153860 | Msa0493870 | 0.842432 | 2.595288e-58 | -8.615850e-47 |
Msa0153860 | Msa0497860 | 0.856096 | 4.052695e-62 | -8.615850e-47 |
Msa0153860 | Msa0510870 | 0.808205 | 3.473119e-50 | -8.615850e-47 |
Msa0153860 | Msa0522140 | 0.837268 | 5.744849e-57 | -8.615850e-47 |
Msa0153860 | Msa0522170 | 0.838506 | 2.761688e-57 | -8.615850e-47 |
Msa0153860 | Msa0531050 | 0.828539 | 8.497180e-55 | -8.615850e-47 |
Msa0153860 | Msa0534610 | 0.824065 | 9.878230e-54 | -8.615850e-47 |
Msa0153860 | Msa0557240 | 0.811016 | 8.645730e-51 | -8.615850e-47 |
Msa0153860 | Msa0557250 | 0.817909 | 2.581404e-52 | -8.615850e-47 |
Msa0153860 | Msa0561110 | 0.831567 | 1.551323e-55 | -8.615850e-47 |
Msa0153860 | Msa0565180 | 0.829119 | 6.150572e-55 | -8.615850e-47 |
Msa0153860 | Msa0566530 | 0.801134 | 1.039019e-48 | -8.615850e-47 |
Msa0153860 | Msa0590810 | 0.821329 | 4.277465e-53 | -8.615850e-47 |
Msa0153860 | Msa0611060 | 0.818522 | 1.876299e-52 | -8.615850e-47 |
Msa0153860 | Msa0615200 | 0.846920 | 1.604111e-59 | -8.615850e-47 |
Msa0153860 | Msa0631130 | 0.818006 | 2.454780e-52 | -8.615850e-47 |
Msa0153860 | Msa0652590 | 0.814493 | 1.498239e-51 | -8.615850e-47 |
Msa0153860 | Msa0652600 | 0.816334 | 5.835077e-52 | -8.615850e-47 |
Msa0153860 | Msa0657340 | 0.825175 | 5.410827e-54 | -8.615850e-47 |
Msa0153860 | Msa0669350 | 0.824364 | 8.403210e-54 | -8.615850e-47 |
Msa0153860 | Msa0682110 | 0.818595 | 1.805924e-52 | -8.615850e-47 |
Msa0153860 | Msa0682160 | 0.818831 | 1.595971e-52 | -8.615850e-47 |
Msa0153860 | Msa0698280 | 0.824035 | 1.004030e-53 | -8.615850e-47 |
Msa0153860 | Msa0701430 | 0.820624 | 6.215165e-53 | -8.615850e-47 |
Msa0153860 | Msa0715040 | 0.802747 | 4.844196e-49 | -8.615850e-47 |
Msa0153860 | Msa0716620 | 0.824828 | 6.534148e-54 | -8.615850e-47 |
Msa0153860 | Msa0728230 | 0.845280 | 4.480380e-59 | -8.615850e-47 |
Msa0153860 | Msa0728570 | 0.846103 | 2.680401e-59 | -8.615850e-47 |
Msa0153860 | Msa0744540 | 0.817331 | 3.485538e-52 | -8.615850e-47 |
Msa0153860 | Msa0744550 | 0.831183 | 1.928626e-55 | -8.615850e-47 |
Msa0153860 | Msa0744560 | 0.835817 | 1.345692e-56 | -8.615850e-47 |
Msa0153860 | Msa0744710 | 0.832795 | 7.711005e-56 | -8.615850e-47 |
Msa0153860 | Msa0795320 | 0.837748 | 4.327824e-57 | -8.615850e-47 |
Msa0153860 | Msa0817190 | 0.803514 | 3.361045e-49 | -8.615850e-47 |
Msa0153860 | Msa0826240 | 0.836404 | 9.548094e-57 | -8.615850e-47 |
Msa0153860 | Msa0826370 | 0.820565 | 6.412383e-53 | -8.615850e-47 |
Msa0153860 | Msa0826380 | 0.813344 | 2.684057e-51 | -8.615850e-47 |
Msa0153860 | Msa0826450 | 0.804094 | 2.546932e-49 | -8.615850e-47 |
Msa0153860 | Msa0865810 | 0.818446 | 1.952244e-52 | -8.615850e-47 |
Msa0153860 | Msa0865820 | 0.831467 | 1.642199e-55 | -8.615850e-47 |
Msa0153860 | Msa0865830 | 0.804222 | 2.395478e-49 | -8.615850e-47 |
Msa0153860 | Msa0873910 | 0.800257 | 1.568513e-48 | -8.615850e-47 |
Msa0153860 | Msa0873940 | 0.822791 | 1.961000e-53 | -8.615850e-47 |
Msa0153860 | Msa0874640 | 0.833624 | 4.792701e-56 | -8.615850e-47 |
Msa0153860 | Msa0945330 | 0.802097 | 6.592821e-49 | -8.615850e-47 |
Msa0153860 | Msa0970410 | 0.807684 | 4.482521e-50 | -8.615850e-47 |
Msa0153860 | Msa1001120 | 0.806670 | 7.349950e-50 | -8.615850e-47 |
Msa0153860 | Msa1030210 | 0.822471 | 2.327681e-53 | -8.615850e-47 |
Msa0153860 | Msa1035050 | 0.816879 | 4.403809e-52 | -8.615850e-47 |
Msa0153860 | Msa1041250 | 0.804532 | 2.064422e-49 | -8.615850e-47 |
Msa0153860 | Msa1061840 | 0.810975 | 8.823371e-51 | -8.615850e-47 |
Msa0153860 | Msa1061970 | 0.812324 | 4.490318e-51 | -8.615850e-47 |
Msa0153860 | Msa1062060 | 0.809075 | 2.263939e-50 | -8.615850e-47 |
Msa0153860 | Msa1069250 | 0.827703 | 1.351182e-54 | -8.615850e-47 |
Msa0153860 | Msa1071350 | 0.858303 | 9.036378e-63 | -8.615850e-47 |
Msa0153860 | Msa1075090 | 0.825931 | 3.580771e-54 | -8.615850e-47 |
Msa0153860 | Msa1077970 | 0.841263 | 5.282400e-58 | -8.615850e-47 |
Msa0153860 | Msa1095590 | 0.815062 | 1.120449e-51 | -8.615850e-47 |
Msa0153860 | Msa1102210 | 0.804772 | 1.839896e-49 | -8.615850e-47 |
Msa0153860 | Msa1110900 | 0.840573 | 8.015256e-58 | -8.615850e-47 |
Msa0153860 | Msa1114670 | 0.819708 | 1.007873e-52 | -8.615850e-47 |
Msa0153860 | Msa1115980 | 0.814924 | 1.202236e-51 | -8.615850e-47 |
Msa0153860 | Msa1120580 | 0.825775 | 3.900257e-54 | -8.615850e-47 |
Msa0153860 | Msa1131120 | 0.802410 | 5.684633e-49 | -8.615850e-47 |
Msa0153860 | Msa1136630 | 0.816379 | 5.701118e-52 | -8.615850e-47 |
Msa0153860 | Msa1136760 | 0.821015 | 5.053768e-53 | -8.615850e-47 |
Msa0153860 | Msa1157110 | 0.820560 | 6.430806e-53 | -8.615850e-47 |
Msa0153860 | Msa1159170 | 0.816570 | 5.165307e-52 | -8.615850e-47 |
Msa0153860 | Msa1174280 | 0.828150 | 1.054690e-54 | -8.615850e-47 |
Msa0153860 | Msa1185270 | 0.818720 | 1.691844e-52 | -8.615850e-47 |
Msa0153860 | Msa1202110 | 0.863017 | 3.360900e-64 | -8.615850e-47 |
Msa0153860 | Msa1203810 | 0.834865 | 2.341215e-56 | -8.615850e-47 |
Msa0153860 | Msa1254870 | 0.858821 | 6.332692e-63 | -8.615850e-47 |
Msa0153860 | Msa1282880 | 0.805943 | 1.045562e-49 | -8.615850e-47 |
Msa0153860 | Msa1328430 | 0.857898 | 1.192672e-62 | -8.615850e-47 |
Msa0153860 | Msa1359770 | 0.800444 | 1.437286e-48 | -8.615850e-47 |
Msa0153860 | Msa1398120 | 0.833482 | 5.199538e-56 | -8.615850e-47 |
Msa0153860 | Msa1398140 | 0.826188 | 3.110759e-54 | -8.615850e-47 |
Msa0153860 | Msa1413800 | 0.812011 | 5.253579e-51 | -8.615850e-47 |
Msa0153860 | Msa1433410 | 0.810926 | 9.042398e-51 | -8.615850e-47 |
Msa0153860 | Msa1436090 | 0.814232 | 1.710739e-51 | -8.615850e-47 |
Msa0153860 | Msa1459920 | 0.843779 | 1.135803e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153860 | MtrunA17_Chr1g0163621 | 86.992 | 369 | 12 | 1 | 1 | 333 | 16 | 384 | 0.0 | 649 |
Msa0153860 | MtrunA17_Chr1g0163611 | 74.865 | 370 | 56 | 2 | 1 | 333 | 1 | 370 | 0.0 | 559 |
Msa0153860 | MtrunA17_Chr1g0163601 | 71.351 | 370 | 69 | 2 | 1 | 333 | 1 | 370 | 0.0 | 536 |
Msa0153860 | MtrunA17_Chr7g0218131 | 46.900 | 371 | 152 | 8 | 3 | 333 | 5 | 370 | 5.58e-108 | 319 |
Msa0153860 | MtrunA17_Chr1g0200491 | 44.892 | 372 | 154 | 7 | 1 | 333 | 13 | 372 | 8.86e-106 | 314 |
Msa0153860 | MtrunA17_Chr7g0218261 | 45.609 | 353 | 150 | 5 | 18 | 333 | 21 | 368 | 7.06e-102 | 304 |
Msa0153860 | MtrunA17_Chr7g0218271 | 46.067 | 356 | 150 | 6 | 18 | 333 | 22 | 375 | 3.15e-98 | 295 |
Msa0153860 | MtrunA17_Chr2g0307521 | 45.429 | 350 | 147 | 6 | 22 | 333 | 20 | 363 | 3.92e-98 | 294 |
Msa0153860 | MtrunA17_Chr7g0218301 | 45.961 | 359 | 151 | 7 | 16 | 333 | 19 | 375 | 4.40e-98 | 294 |
Msa0153860 | MtrunA17_Chr7g0218211 | 44.350 | 354 | 154 | 6 | 18 | 333 | 21 | 369 | 2.07e-97 | 292 |
Msa0153860 | MtrunA17_Chr3g0085211 | 45.152 | 361 | 154 | 7 | 11 | 333 | 16 | 370 | 5.56e-97 | 291 |
Msa0153860 | MtrunA17_Chr7g0218181 | 43.351 | 376 | 161 | 8 | 1 | 333 | 1 | 367 | 6.09e-97 | 291 |
Msa0153860 | MtrunA17_Chr3g0085201 | 43.490 | 361 | 158 | 8 | 12 | 333 | 4 | 357 | 5.23e-90 | 273 |
Msa0153860 | MtrunA17_Chr3g0128011 | 36.022 | 372 | 190 | 8 | 1 | 333 | 55 | 417 | 1.34e-78 | 246 |
Msa0153860 | MtrunA17_Chr1g0170931 | 91.803 | 122 | 10 | 0 | 21 | 142 | 5 | 126 | 2.56e-75 | 227 |
Msa0153860 | MtrunA17_Chr7g0276401 | 39.503 | 362 | 168 | 9 | 13 | 333 | 24 | 375 | 4.29e-74 | 233 |
Msa0153860 | MtrunA17_Chr5g0448091 | 35.537 | 363 | 184 | 9 | 13 | 333 | 9 | 363 | 4.60e-68 | 217 |
Msa0153860 | MtrunA17_Chr7g0276411 | 35.068 | 365 | 188 | 8 | 11 | 333 | 5 | 362 | 2.37e-65 | 210 |
Msa0153860 | MtrunA17_Chr8g0367451 | 34.048 | 373 | 198 | 8 | 1 | 333 | 12 | 376 | 4.39e-65 | 210 |
Msa0153860 | MtrunA17_Chr8g0367501 | 33.149 | 362 | 197 | 6 | 12 | 333 | 9 | 365 | 1.26e-64 | 210 |
Msa0153860 | MtrunA17_Chr8g0367491 | 34.181 | 354 | 186 | 7 | 20 | 333 | 30 | 376 | 5.45e-64 | 207 |
Msa0153860 | MtrunA17_Chr8g0367441 | 34.853 | 373 | 195 | 8 | 1 | 333 | 13 | 377 | 6.30e-64 | 207 |
Msa0153860 | MtrunA17_Chr8g0345851 | 36.268 | 284 | 133 | 7 | 92 | 333 | 13 | 290 | 8.32e-53 | 175 |
Msa0153860 | MtrunA17_Chr8g0367381 | 31.953 | 338 | 167 | 7 | 1 | 299 | 13 | 326 | 1.04e-50 | 171 |
Msa0153860 | MtrunA17_Chr1g0170951 | 93.151 | 73 | 5 | 0 | 243 | 315 | 17 | 89 | 5.41e-44 | 146 |
Msa0153860 | MtrunA17_Chr3g0130011 | 31.302 | 361 | 196 | 9 | 14 | 333 | 9 | 358 | 2.88e-42 | 150 |
Msa0153860 | MtrunA17_Chr2g0314271 | 30.411 | 365 | 197 | 8 | 12 | 333 | 4 | 354 | 2.29e-41 | 147 |
Msa0153860 | MtrunA17_Chr3g0130061 | 30.769 | 364 | 194 | 10 | 14 | 333 | 9 | 358 | 2.37e-40 | 145 |
Msa0153860 | MtrunA17_Chr4g0022021 | 27.515 | 338 | 189 | 11 | 37 | 332 | 44 | 367 | 1.01e-30 | 119 |
Msa0153860 | MtrunA17_Chr4g0021981 | 27.434 | 339 | 188 | 12 | 37 | 332 | 44 | 367 | 1.19e-29 | 116 |
Msa0153860 | MtrunA17_Chr5g0432251 | 24.725 | 364 | 218 | 10 | 14 | 332 | 6 | 358 | 9.84e-26 | 105 |
Msa0153860 | MtrunA17_Chr5g0432241 | 26.216 | 370 | 211 | 11 | 13 | 332 | 2 | 359 | 2.13e-25 | 104 |
Msa0153860 | MtrunA17_Chr8g0367461 | 42.105 | 114 | 63 | 2 | 221 | 333 | 1 | 112 | 3.08e-25 | 98.2 |
Msa0153860 | MtrunA17_Chr3g0121301 | 30.952 | 210 | 104 | 5 | 143 | 312 | 134 | 342 | 3.75e-25 | 103 |
Msa0153860 | MtrunA17_Chr7g0223231 | 23.304 | 339 | 184 | 6 | 29 | 317 | 24 | 336 | 9.79e-25 | 102 |
Msa0153860 | MtrunA17_Chr5g0432301 | 26.012 | 346 | 202 | 10 | 29 | 332 | 26 | 359 | 1.24e-24 | 102 |
Msa0153860 | MtrunA17_Chr1g0188391 | 26.970 | 330 | 177 | 10 | 37 | 317 | 33 | 347 | 1.90e-24 | 102 |
Msa0153860 | MtrunA17_Chr7g0219161 | 26.644 | 289 | 167 | 5 | 69 | 318 | 62 | 344 | 2.09e-24 | 102 |
Msa0153860 | MtrunA17_Chr4g0046361 | 26.608 | 342 | 191 | 10 | 37 | 332 | 33 | 360 | 7.21e-24 | 100 |
Msa0153860 | MtrunA17_Chr5g0432261 | 27.302 | 315 | 193 | 11 | 37 | 332 | 29 | 326 | 1.02e-23 | 99.4 |
Msa0153860 | MtrunA17_Chr4g0040621 | 26.686 | 341 | 195 | 7 | 22 | 318 | 27 | 356 | 1.06e-23 | 100 |
Msa0153860 | MtrunA17_Chr7g0223241 | 23.894 | 339 | 182 | 6 | 29 | 317 | 24 | 336 | 1.14e-23 | 99.8 |
Msa0153860 | MtrunA17_Chr7g0219141 | 24.571 | 350 | 184 | 8 | 37 | 332 | 33 | 356 | 2.47e-23 | 99.0 |
Msa0153860 | MtrunA17_Chr6g0482291 | 32.258 | 186 | 79 | 4 | 185 | 333 | 1 | 176 | 3.21e-23 | 94.7 |
Msa0153860 | MtrunA17_Chr5g0432211 | 25.344 | 363 | 197 | 10 | 19 | 332 | 7 | 344 | 7.24e-23 | 97.4 |
Msa0153860 | MtrunA17_Chr4g0014561 | 25.937 | 347 | 205 | 9 | 29 | 332 | 25 | 362 | 7.41e-23 | 97.8 |
Msa0153860 | MtrunA17_Chr4g0046531 | 25.382 | 327 | 187 | 7 | 34 | 317 | 30 | 342 | 1.89e-22 | 98.2 |
Msa0153860 | MtrunA17_Chr4g0046531 | 29.101 | 189 | 95 | 2 | 168 | 317 | 516 | 704 | 1.21e-21 | 95.9 |
Msa0153860 | MtrunA17_Chr1g0188371 | 28.191 | 188 | 95 | 2 | 164 | 311 | 153 | 340 | 4.77e-22 | 95.5 |
Msa0153860 | MtrunA17_Chr4g0014641 | 25.369 | 339 | 201 | 10 | 37 | 332 | 33 | 362 | 1.27e-21 | 94.4 |
Msa0153860 | MtrunA17_Chr4g0014681 | 25.360 | 347 | 207 | 9 | 29 | 332 | 25 | 362 | 1.41e-21 | 94.0 |
Msa0153860 | MtrunA17_Chr4g0046341 | 26.087 | 345 | 192 | 10 | 37 | 332 | 33 | 363 | 7.10e-21 | 92.0 |
Msa0153860 | MtrunA17_Chr7g0219171 | 34.426 | 122 | 74 | 3 | 214 | 332 | 129 | 247 | 1.28e-19 | 86.7 |
Msa0153860 | MtrunA17_Chr8g0367391 | 43.564 | 101 | 54 | 2 | 234 | 333 | 36 | 134 | 2.76e-18 | 80.1 |
Msa0153860 | MtrunA17_Chr8g0367411 | 31.496 | 127 | 82 | 2 | 12 | 136 | 2 | 125 | 2.79e-16 | 74.7 |
Msa0153860 | MtrunA17_Chr8g0367481 | 33.088 | 136 | 85 | 3 | 1 | 134 | 13 | 144 | 6.38e-16 | 73.9 |
Msa0153860 | MtrunA17_Chr4g0014661 | 24.855 | 346 | 204 | 9 | 29 | 332 | 25 | 356 | 9.40e-16 | 77.4 |
Msa0153860 | MtrunA17_Chr8g0367421 | 38.710 | 93 | 38 | 1 | 162 | 235 | 2 | 94 | 5.83e-15 | 70.5 |
Msa0153860 | MtrunA17_Chr6g0476581 | 54.412 | 68 | 26 | 1 | 22 | 89 | 28 | 90 | 6.73e-13 | 64.7 |
Msa0153860 | MtrunA17_Chr4g0014591 | 24.784 | 347 | 205 | 9 | 28 | 332 | 24 | 356 | 2.78e-12 | 67.0 |
Msa0153860 | MtrunA17_Chr6g0482281 | 37.190 | 121 | 69 | 3 | 18 | 134 | 33 | 150 | 7.55e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0153860 | AT5G54160.1 | 37.430 | 358 | 176 | 7 | 1 | 319 | 1 | 349 | 1.82e-75 | 236 |
Msa0153860 | AT1G77520.1 | 34.109 | 387 | 192 | 12 | 3 | 333 | 2 | 381 | 6.28e-68 | 218 |
Msa0153860 | AT1G33030.1 | 33.523 | 352 | 181 | 9 | 24 | 333 | 10 | 350 | 5.58e-58 | 191 |
Msa0153860 | AT1G51990.2 | 32.635 | 334 | 183 | 6 | 18 | 312 | 13 | 343 | 3.65e-57 | 189 |
Msa0153860 | AT1G63140.2 | 33.791 | 364 | 184 | 11 | 18 | 333 | 27 | 381 | 3.73e-57 | 190 |
Msa0153860 | AT1G63140.4 | 33.791 | 364 | 184 | 11 | 18 | 333 | 47 | 401 | 3.86e-57 | 190 |
Msa0153860 | AT1G77530.1 | 35.159 | 347 | 172 | 9 | 33 | 333 | 42 | 381 | 6.28e-57 | 189 |
Msa0153860 | AT1G51990.1 | 32.036 | 334 | 185 | 6 | 18 | 312 | 13 | 343 | 5.32e-55 | 184 |
Msa0153860 | AT1G21130.1 | 33.699 | 365 | 184 | 15 | 1 | 319 | 9 | 361 | 2.48e-49 | 169 |
Msa0153860 | AT5G53810.1 | 31.988 | 347 | 182 | 11 | 34 | 333 | 39 | 378 | 8.37e-49 | 168 |
Msa0153860 | AT1G21100.1 | 32.603 | 365 | 188 | 15 | 1 | 319 | 9 | 361 | 1.13e-47 | 165 |
Msa0153860 | AT1G21110.1 | 31.967 | 366 | 189 | 15 | 1 | 319 | 9 | 361 | 2.38e-46 | 161 |
Msa0153860 | AT1G21120.1 | 31.967 | 366 | 189 | 15 | 1 | 319 | 9 | 361 | 2.20e-45 | 159 |
Msa0153860 | AT1G76790.1 | 33.429 | 347 | 174 | 12 | 22 | 320 | 17 | 354 | 2.25e-45 | 159 |
Msa0153860 | AT1G21120.2 | 31.967 | 366 | 189 | 15 | 1 | 319 | 57 | 409 | 2.00e-44 | 157 |
Msa0153860 | AT3G53140.1 | 31.161 | 353 | 177 | 9 | 15 | 316 | 7 | 344 | 3.52e-38 | 139 |
Msa0153860 | AT1G62900.1 | 35.122 | 205 | 93 | 4 | 167 | 333 | 3 | 205 | 7.65e-38 | 134 |
Msa0153860 | AT1G33030.3 | 32.157 | 255 | 123 | 7 | 24 | 237 | 10 | 255 | 5.72e-33 | 123 |
Msa0153860 | AT5G37170.1 | 30.503 | 318 | 143 | 10 | 61 | 333 | 50 | 334 | 3.17e-32 | 123 |
Msa0153860 | AT1G33030.2 | 32.016 | 253 | 122 | 7 | 24 | 235 | 10 | 253 | 6.21e-32 | 120 |
Msa0153860 | AT1G63140.1 | 31.439 | 264 | 128 | 8 | 18 | 235 | 47 | 303 | 1.06e-30 | 118 |
Msa0153860 | AT5G37170.2 | 34.171 | 199 | 90 | 4 | 174 | 333 | 38 | 234 | 2.14e-29 | 113 |
Msa0153860 | AT5G37170.3 | 34.043 | 188 | 83 | 4 | 185 | 333 | 1 | 186 | 4.09e-26 | 103 |
Msa0153860 | AT1G63140.3 | 34.146 | 205 | 118 | 7 | 18 | 212 | 47 | 244 | 2.99e-25 | 103 |
Msa0153860 | AT4G35160.1 | 26.616 | 263 | 137 | 9 | 123 | 333 | 123 | 381 | 6.26e-24 | 101 |
Msa0153860 | AT1G77530.2 | 36.170 | 188 | 107 | 6 | 33 | 212 | 42 | 224 | 1.14e-23 | 98.6 |
Msa0153860 | AT1G21130.2 | 31.183 | 279 | 136 | 13 | 1 | 235 | 9 | 275 | 3.68e-23 | 97.8 |
Msa0153860 | AT4G35150.1 | 29.064 | 203 | 98 | 5 | 161 | 317 | 108 | 310 | 4.86e-23 | 97.8 |
Find 53 sgRNAs with CRISPR-Local
Find 594 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGAATAAACTTTAATATA+TGG | 0.158267 | 1_4:-17812269 | Msa0153860:three_prime_UTR |
ACTGCAAGCAATATGAAATT+TGG | 0.211032 | 1_4:+17812390 | None:intergenic |
ATCCATGAACTTTATGAAAA+TGG | 0.232199 | 1_4:+17815414 | None:intergenic |
ATCACCGGCTTATAAATATT+TGG | 0.239790 | 1_4:-17815393 | Msa0153860:CDS |
ACAATCACCTTTCCATGTTT+TGG | 0.241056 | 1_4:+17812559 | None:intergenic |
TCAAGCCTCTCAGCCAATTC+AGG | 0.269845 | 1_4:+17815965 | None:intergenic |
ACATGGAAAGGTGATTGTTT+TGG | 0.270336 | 1_4:-17812554 | Msa0153860:CDS |
TGAAAATGGTCATTGTTGTT+AGG | 0.282307 | 1_4:+17815428 | None:intergenic |
GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1_4:-17815825 | Msa0153860:CDS |
GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1_4:+17815977 | None:intergenic |
TTTAGCTTGTATGTCACAAT+TGG | 0.318038 | 1_4:-17812630 | Msa0153860:intron |
TTGAATAAACTTTAATATAT+GGG | 0.330332 | 1_4:-17812268 | Msa0153860:three_prime_UTR |
TGTTGGAAACTGAGTTTGTT+TGG | 0.332085 | 1_4:+17816174 | None:intergenic |
GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1_4:-17815824 | Msa0153860:CDS |
AGGATTCTTACACTATATAA+AGG | 0.342110 | 1_4:-17815302 | Msa0153860:CDS |
GAAAATGGTCATTGTTGTTA+GGG | 0.378056 | 1_4:+17815429 | None:intergenic |
ATAGCAGCATTTAGTATTGC+AGG | 0.379466 | 1_4:+17816088 | None:intergenic |
TTCTTTCTTACAATCTTCAT+TGG | 0.380723 | 1_4:+17815889 | None:intergenic |
TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1_4:-17815978 | Msa0153860:CDS |
AACAAAGCAATGGCTCAATC+TGG | 0.399952 | 1_4:-17815341 | Msa0153860:CDS |
TTGCTTGGGTTTGGGACCTC+AGG | 0.403803 | 1_4:+17812520 | None:intergenic |
TACACTATATAAAGGATTTG+AGG | 0.415995 | 1_4:-17815294 | Msa0153860:CDS |
CTCAGCTATGTCTGGAGTAA+TGG | 0.435264 | 1_4:-17812362 | Msa0153860:CDS |
ATCGTGGATATCATGATGTT+TGG | 0.437952 | 1_4:-17815781 | Msa0153860:intron |
TTCTCCAAATATTTATAAGC+CGG | 0.439608 | 1_4:+17815389 | None:intergenic |
GTTTATGCTCTCTCATCAAT+TGG | 0.442550 | 1_4:-17815863 | Msa0153860:CDS |
CAAAACTTATGCATGAGCTC+TGG | 0.450322 | 1_4:-17812418 | Msa0153860:CDS |
TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1_4:-17815836 | Msa0153860:CDS |
CACAAAGCTTTGCCAAAACA+TGG | 0.460437 | 1_4:-17812571 | Msa0153860:CDS |
ACACTATATAAAGGATTTGA+GGG | 0.464404 | 1_4:-17815293 | Msa0153860:CDS |
CTGGTCCATTAGAAATGAAA+AGG | 0.467725 | 1_4:-17815322 | Msa0153860:CDS |
AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1_4:-17815846 | Msa0153860:CDS |
CTCACTAACCTTTAGTAAGA+TGG | 0.473210 | 1_4:+17814911 | None:intergenic |
AGTGATATCTCAGCTATGTC+TGG | 0.511397 | 1_4:-17812370 | Msa0153860:CDS |
TTAGCTTGTATGTCACAATT+GGG | 0.515973 | 1_4:-17812629 | Msa0153860:intron |
AAACTGAGTTTGTTTGGAGT+TGG | 0.519524 | 1_4:+17816180 | None:intergenic |
TCATAAAGTTCATGGATCAC+CGG | 0.521104 | 1_4:-17815408 | Msa0153860:CDS |
ACAATCTTCATTGGTACGAA+TGG | 0.523288 | 1_4:+17815898 | None:intergenic |
TGGTGATGCCATCTTACTAA+AGG | 0.525689 | 1_4:-17814919 | Msa0153860:intron |
CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1_4:+17815966 | None:intergenic |
GCAGGGATAGAGCATGTTGA+AGG | 0.553467 | 1_4:-17814966 | Msa0153860:intron |
TGAACGTATGTTGACTGTGT+TGG | 0.557787 | 1_4:-17815945 | Msa0153860:CDS |
AGTAAGATGGCATCACCACT+TGG | 0.563966 | 1_4:+17814924 | None:intergenic |
AGCTTTGCCAAAACATGGAA+AGG | 0.583092 | 1_4:-17812566 | Msa0153860:CDS |
CGATGGATTAATGCTGAGAG+TGG | 0.600634 | 1_4:+17815800 | None:intergenic |
GTCTCAACACTAGTTGATGT+AGG | 0.620089 | 1_4:-17815269 | Msa0153860:intron |
TTTGGATTATATAATTCCTG+AGG | 0.621007 | 1_4:-17812536 | Msa0153860:CDS |
AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1_4:-17815970 | Msa0153860:CDS |
TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1_4:-17815833 | Msa0153860:CDS |
CTCTCAGCATTAATCCATCG+TGG | 0.651626 | 1_4:-17815797 | Msa0153860:CDS |
ACAAACTCAGTTTCCAACAG+AGG | 0.673127 | 1_4:-17816170 | Msa0153860:CDS |
AAACATCATGATATCCACGA+TGG | 0.677658 | 1_4:+17815783 | None:intergenic |
ATGTTTGAAAGTGTTCCAAG+TGG | 0.742592 | 1_4:-17814939 | Msa0153860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTCTAATTATTAATTT+TGG | + | chr1_4:17813370-17813389 | None:intergenic | 10.0% |
!! | TTGAATAAACTTTAATATAT+GGG | - | chr1_4:17816105-17816124 | Msa0153860:CDS | 10.0% |
!!! | CATTTTCTAATTATTAATTT+TGG | + | chr1_4:17813370-17813389 | None:intergenic | 10.0% |
!! | TTGAATAAACTTTAATATAT+GGG | - | chr1_4:17816105-17816124 | Msa0153860:CDS | 10.0% |
!!! | ATTTTCTTTTTTTGTTTTGT+TGG | - | chr1_4:17812668-17812687 | Msa0153860:intron | 15.0% |
!!! | TGACTATTTTTACTTTATTA+TGG | - | chr1_4:17812790-17812809 | Msa0153860:intron | 15.0% |
!! | TATGAATGAATTGAATAATT+AGG | - | chr1_4:17813312-17813331 | Msa0153860:intron | 15.0% |
!!! | TATTTAAAAACCACATTTTT+TGG | - | chr1_4:17813537-17813556 | Msa0153860:intron | 15.0% |
!! | CAATAAATTGATCTTTAAAT+TGG | - | chr1_4:17813710-17813729 | Msa0153860:intron | 15.0% |
!! | TCAAAATTATGAATAAAGAT+TGG | + | chr1_4:17814100-17814119 | None:intergenic | 15.0% |
!!! | AATCTTTATTCATAATTTTG+AGG | - | chr1_4:17814099-17814118 | Msa0153860:intron | 15.0% |
!! | AAAAAGAATTAAAAAGGAAT+TGG | - | chr1_4:17814446-17814465 | Msa0153860:intron | 15.0% |
!! | TTATAAACTAGATGATTTAT+TGG | - | chr1_4:17814634-17814653 | Msa0153860:intron | 15.0% |
!! | ACAAACAATAATTAAAAATC+CGG | + | chr1_4:17815056-17815075 | None:intergenic | 15.0% |
!!! | AAAGTGGTTTTTTTTTAATA+GGG | - | chr1_4:17815570-17815589 | Msa0153860:intron | 15.0% |
!!! | TAAGTTTTGAAATTCATTTT+CGG | + | chr1_4:17815944-17815963 | None:intergenic | 15.0% |
!! | CTTGAATAAACTTTAATATA+TGG | - | chr1_4:17816104-17816123 | Msa0153860:CDS | 15.0% |
!!! | ATTTTCTTTTTTTGTTTTGT+TGG | - | chr1_4:17812668-17812687 | Msa0153860:intron | 15.0% |
!!! | TGACTATTTTTACTTTATTA+TGG | - | chr1_4:17812790-17812809 | Msa0153860:intron | 15.0% |
!! | TATGAATGAATTGAATAATT+AGG | - | chr1_4:17813312-17813331 | Msa0153860:intron | 15.0% |
!!! | TATTTAAAAACCACATTTTT+TGG | - | chr1_4:17813537-17813556 | Msa0153860:intron | 15.0% |
!! | CAATAAATTGATCTTTAAAT+TGG | - | chr1_4:17813710-17813729 | Msa0153860:intron | 15.0% |
!! | TCAAAATTATGAATAAAGAT+TGG | + | chr1_4:17814100-17814119 | None:intergenic | 15.0% |
!!! | AATCTTTATTCATAATTTTG+AGG | - | chr1_4:17814099-17814118 | Msa0153860:intron | 15.0% |
!! | AAAAAGAATTAAAAAGGAAT+TGG | - | chr1_4:17814446-17814465 | Msa0153860:intron | 15.0% |
!! | TTATAAACTAGATGATTTAT+TGG | - | chr1_4:17814634-17814653 | Msa0153860:intron | 15.0% |
!! | ACAAACAATAATTAAAAATC+CGG | + | chr1_4:17815056-17815075 | None:intergenic | 15.0% |
!!! | AAAGTGGTTTTTTTTTAATA+GGG | - | chr1_4:17815570-17815589 | Msa0153860:intron | 15.0% |
!!! | TAAGTTTTGAAATTCATTTT+CGG | + | chr1_4:17815944-17815963 | None:intergenic | 15.0% |
!! | CTTGAATAAACTTTAATATA+TGG | - | chr1_4:17816104-17816123 | Msa0153860:CDS | 15.0% |
!!! | ATTATGTTGTTTCTTTTTTC+AGG | - | chr1_4:17812895-17812914 | Msa0153860:intron | 20.0% |
!!! | TCAAATTTTTAACAAAGCAA+TGG | - | chr1_4:17813022-17813041 | Msa0153860:intron | 20.0% |
!!! | AAATTAATGCCTTTTATTGA+AGG | + | chr1_4:17813173-17813192 | None:intergenic | 20.0% |
!! | TTATGTGTATATATATTACC+TGG | + | chr1_4:17813233-17813252 | None:intergenic | 20.0% |
!!! | ATATTCTTCTCTTTTTATAG+TGG | - | chr1_4:17813277-17813296 | Msa0153860:intron | 20.0% |
!!! | AAATAAGATTTCTTTTCACA+TGG | + | chr1_4:17813522-17813541 | None:intergenic | 20.0% |
!! | AACTAATTTAGAGATCAATA+TGG | - | chr1_4:17813751-17813770 | Msa0153860:intron | 20.0% |
!!! | AATAATTTTACAGCAATGAT+TGG | - | chr1_4:17813782-17813801 | Msa0153860:intron | 20.0% |
!!! | AATAAATTCTGGAAAAATAG+TGG | + | chr1_4:17813905-17813924 | None:intergenic | 20.0% |
!!! | CTATTTTTCCAGAATTTATT+TGG | - | chr1_4:17813905-17813924 | Msa0153860:intron | 20.0% |
!! | TTAGTTAACCAAATAAATTC+TGG | + | chr1_4:17813916-17813935 | None:intergenic | 20.0% |
!! | AATTTATTTGGTTAACTAAG+TGG | - | chr1_4:17813917-17813936 | Msa0153860:intron | 20.0% |
!!! | TTAACTAAAATTTTCCAAAG+TGG | - | chr1_4:17814043-17814062 | Msa0153860:intron | 20.0% |
!!! | AAAGTGGTTTTTTTTAATAG+GGG | + | chr1_4:17814258-17814277 | None:intergenic | 20.0% |
!!! | GAAAGTGGTTTTTTTTAATA+GGG | + | chr1_4:17814259-17814278 | None:intergenic | 20.0% |
!! | TTAATTAATTAAATGTCACG+TGG | + | chr1_4:17814369-17814388 | None:intergenic | 20.0% |
!!! | TTTTACTTGCTTTTCATTTA+TGG | + | chr1_4:17814788-17814807 | None:intergenic | 20.0% |
!! | TAAAAAATGAAGAAGATAGA+AGG | - | chr1_4:17815285-17815304 | Msa0153860:CDS | 20.0% |
!!! | ATGAATTTTTGCCAATTAAA+AGG | + | chr1_4:17815399-17815418 | None:intergenic | 20.0% |
!!! | GAAAGTGGTTTTTTTTTAAT+AGG | - | chr1_4:17815569-17815588 | Msa0153860:intron | 20.0% |
!!! | AAGTGGTTTTTTTTTAATAG+GGG | - | chr1_4:17815571-17815590 | Msa0153860:intron | 20.0% |
!! | AATTAATAATTCTGTCAATG+TGG | - | chr1_4:17815674-17815693 | Msa0153860:intron | 20.0% |
!! | AAAATACAATAAATGTGGTT+AGG | + | chr1_4:17815712-17815731 | None:intergenic | 20.0% |
!! | AGAGAAAAATACAATAAATG+TGG | + | chr1_4:17815717-17815736 | None:intergenic | 20.0% |
!!! | AATCTCATGTTTTTAATACA+TGG | - | chr1_4:17815904-17815923 | Msa0153860:CDS | 20.0% |
!!! | ATTATGTTGTTTCTTTTTTC+AGG | - | chr1_4:17812895-17812914 | Msa0153860:intron | 20.0% |
!!! | TCAAATTTTTAACAAAGCAA+TGG | - | chr1_4:17813022-17813041 | Msa0153860:intron | 20.0% |
!!! | AAATTAATGCCTTTTATTGA+AGG | + | chr1_4:17813173-17813192 | None:intergenic | 20.0% |
!! | TTATGTGTATATATATTACC+TGG | + | chr1_4:17813233-17813252 | None:intergenic | 20.0% |
!!! | ATATTCTTCTCTTTTTATAG+TGG | - | chr1_4:17813277-17813296 | Msa0153860:intron | 20.0% |
!!! | AAATAAGATTTCTTTTCACA+TGG | + | chr1_4:17813522-17813541 | None:intergenic | 20.0% |
!! | AACTAATTTAGAGATCAATA+TGG | - | chr1_4:17813751-17813770 | Msa0153860:intron | 20.0% |
!!! | AATAATTTTACAGCAATGAT+TGG | - | chr1_4:17813782-17813801 | Msa0153860:intron | 20.0% |
!!! | AATAAATTCTGGAAAAATAG+TGG | + | chr1_4:17813905-17813924 | None:intergenic | 20.0% |
!!! | CTATTTTTCCAGAATTTATT+TGG | - | chr1_4:17813905-17813924 | Msa0153860:intron | 20.0% |
!! | TTAGTTAACCAAATAAATTC+TGG | + | chr1_4:17813916-17813935 | None:intergenic | 20.0% |
!! | AATTTATTTGGTTAACTAAG+TGG | - | chr1_4:17813917-17813936 | Msa0153860:intron | 20.0% |
!!! | TTAACTAAAATTTTCCAAAG+TGG | - | chr1_4:17814043-17814062 | Msa0153860:intron | 20.0% |
!!! | AAAGTGGTTTTTTTTAATAG+GGG | + | chr1_4:17814258-17814277 | None:intergenic | 20.0% |
!!! | GAAAGTGGTTTTTTTTAATA+GGG | + | chr1_4:17814259-17814278 | None:intergenic | 20.0% |
!! | TTAATTAATTAAATGTCACG+TGG | + | chr1_4:17814369-17814388 | None:intergenic | 20.0% |
!!! | TTTTACTTGCTTTTCATTTA+TGG | + | chr1_4:17814788-17814807 | None:intergenic | 20.0% |
!! | TAAAAAATGAAGAAGATAGA+AGG | - | chr1_4:17815285-17815304 | Msa0153860:CDS | 20.0% |
!!! | ATGAATTTTTGCCAATTAAA+AGG | + | chr1_4:17815399-17815418 | None:intergenic | 20.0% |
!!! | GAAAGTGGTTTTTTTTTAAT+AGG | - | chr1_4:17815569-17815588 | Msa0153860:intron | 20.0% |
!!! | AAGTGGTTTTTTTTTAATAG+GGG | - | chr1_4:17815571-17815590 | Msa0153860:intron | 20.0% |
!! | AATTAATAATTCTGTCAATG+TGG | - | chr1_4:17815674-17815693 | Msa0153860:intron | 20.0% |
!! | AAAATACAATAAATGTGGTT+AGG | + | chr1_4:17815712-17815731 | None:intergenic | 20.0% |
!! | AGAGAAAAATACAATAAATG+TGG | + | chr1_4:17815717-17815736 | None:intergenic | 20.0% |
!!! | AATCTCATGTTTTTAATACA+TGG | - | chr1_4:17815904-17815923 | Msa0153860:CDS | 20.0% |
! | TTCTTTCTTACAATCTTCAT+TGG | + | chr1_4:17812487-17812506 | None:intergenic | 25.0% |
!! | TTATTCAAACTGTTTCTTCA+AGG | - | chr1_4:17812629-17812648 | Msa0153860:intron | 25.0% |
!! | TTATTATGGTGTTAACATTC+CGG | - | chr1_4:17812804-17812823 | Msa0153860:intron | 25.0% |
!! | CGATCGAATTTAAAATTTCT+AGG | + | chr1_4:17812848-17812867 | None:intergenic | 25.0% |
!! | AAATTTTAAATTCGATCGCT+GGG | - | chr1_4:17812850-17812869 | Msa0153860:intron | 25.0% |
!!! | AATCGTTTTGAACAATACTT+AGG | + | chr1_4:17812878-17812897 | None:intergenic | 25.0% |
! | ATCCATGAACTTTATGAAAA+TGG | + | chr1_4:17812962-17812981 | None:intergenic | 25.0% |
! | TTCTCCAAATATTTATAAGC+CGG | + | chr1_4:17812987-17813006 | None:intergenic | 25.0% |
!! | AGAATCCTTTTCATTTCTAA+TGG | + | chr1_4:17813059-17813078 | None:intergenic | 25.0% |
! | AGGATTCTTACACTATATAA+AGG | - | chr1_4:17813071-17813090 | Msa0153860:intron | 25.0% |
! | TACACTATATAAAGGATTTG+AGG | - | chr1_4:17813079-17813098 | Msa0153860:intron | 25.0% |
! | ACACTATATAAAGGATTTGA+GGG | - | chr1_4:17813080-17813099 | Msa0153860:intron | 25.0% |
! | TCTGAATATCCTTCAATAAA+AGG | - | chr1_4:17813161-17813180 | Msa0153860:intron | 25.0% |
! | AATGATATTCCATTCTTTCT+AGG | + | chr1_4:17813341-17813360 | None:intergenic | 25.0% |
!!! | TTTTTTGGTCGCTAATAAAT+TGG | - | chr1_4:17813552-17813571 | Msa0153860:intron | 25.0% |
! | TTTGTCAATAAGTAGTTTAG+TGG | - | chr1_4:17813582-17813601 | Msa0153860:intron | 25.0% |
! | TTTAGAGATCAATATGGATT+TGG | - | chr1_4:17813757-17813776 | Msa0153860:intron | 25.0% |
!!! | TTAACTGAAATTTTTCAGAG+TGG | + | chr1_4:17813839-17813858 | None:intergenic | 25.0% |
! | TTAACTAAGTGGAAAAAAAG+TGG | - | chr1_4:17813928-17813947 | Msa0153860:intron | 25.0% |
! | TATTTAGAAGCTGAAAAATG+TGG | + | chr1_4:17813976-17813995 | None:intergenic | 25.0% |
!!! | ATTTTTCAGCTTCTAAATAG+TGG | - | chr1_4:17813977-17813996 | Msa0153860:intron | 25.0% |
! | TTACATAGAGAGTTTCTAAT+AGG | - | chr1_4:17814184-17814203 | Msa0153860:intron | 25.0% |
!!! | AAGTGGTTTTTTTTAATAGG+GGG | + | chr1_4:17814257-17814276 | None:intergenic | 25.0% |
!!! | GGAAAGTGGTTTTTTTTAAT+AGG | + | chr1_4:17814260-17814279 | None:intergenic | 25.0% |
!!! | GTGTATAAAGAGCTTTTTTT+TGG | + | chr1_4:17814500-17814519 | None:intergenic | 25.0% |
!!! | TCTAGTTTATAACAACGTTT+TGG | + | chr1_4:17814626-17814645 | None:intergenic | 25.0% |
! | TGATTTATTGGAACAATACA+AGG | - | chr1_4:17814646-17814665 | Msa0153860:intron | 25.0% |
! | AAACACAAAGTGAAGTTATT+TGG | - | chr1_4:17814847-17814866 | Msa0153860:intron | 25.0% |
! | AACAATAATTAAAAATCCGG+TGG | + | chr1_4:17815053-17815072 | None:intergenic | 25.0% |
! | TATTGTTTGTGATGAATTTG+AGG | - | chr1_4:17815066-17815085 | Msa0153860:intron | 25.0% |
! | ATTGTTTGTGATGAATTTGA+GGG | - | chr1_4:17815067-17815086 | Msa0153860:intron | 25.0% |
! | TTAATTAATTAAATGCCACG+TGG | - | chr1_4:17815459-17815478 | Msa0153860:CDS | 25.0% |
!!! | AGTGGTTTTTTTTTAATAGG+GGG | - | chr1_4:17815572-17815591 | Msa0153860:intron | 25.0% |
! | TTTGGATTATATAATTCCTG+AGG | - | chr1_4:17815837-17815856 | Msa0153860:CDS | 25.0% |
!! | ATTAGCACTCTATTTTACTT+TGG | - | chr1_4:17816156-17816175 | Msa0153860:CDS | 25.0% |
! | TTCTTTCTTACAATCTTCAT+TGG | + | chr1_4:17812487-17812506 | None:intergenic | 25.0% |
!! | TTATTCAAACTGTTTCTTCA+AGG | - | chr1_4:17812629-17812648 | Msa0153860:intron | 25.0% |
!! | TTATTATGGTGTTAACATTC+CGG | - | chr1_4:17812804-17812823 | Msa0153860:intron | 25.0% |
!! | CGATCGAATTTAAAATTTCT+AGG | + | chr1_4:17812848-17812867 | None:intergenic | 25.0% |
!! | AAATTTTAAATTCGATCGCT+GGG | - | chr1_4:17812850-17812869 | Msa0153860:intron | 25.0% |
!!! | AATCGTTTTGAACAATACTT+AGG | + | chr1_4:17812878-17812897 | None:intergenic | 25.0% |
! | ATCCATGAACTTTATGAAAA+TGG | + | chr1_4:17812962-17812981 | None:intergenic | 25.0% |
! | TTCTCCAAATATTTATAAGC+CGG | + | chr1_4:17812987-17813006 | None:intergenic | 25.0% |
!! | AGAATCCTTTTCATTTCTAA+TGG | + | chr1_4:17813059-17813078 | None:intergenic | 25.0% |
! | AGGATTCTTACACTATATAA+AGG | - | chr1_4:17813071-17813090 | Msa0153860:intron | 25.0% |
! | TACACTATATAAAGGATTTG+AGG | - | chr1_4:17813079-17813098 | Msa0153860:intron | 25.0% |
! | ACACTATATAAAGGATTTGA+GGG | - | chr1_4:17813080-17813099 | Msa0153860:intron | 25.0% |
! | TCTGAATATCCTTCAATAAA+AGG | - | chr1_4:17813161-17813180 | Msa0153860:intron | 25.0% |
! | AATGATATTCCATTCTTTCT+AGG | + | chr1_4:17813341-17813360 | None:intergenic | 25.0% |
!!! | TTTTTTGGTCGCTAATAAAT+TGG | - | chr1_4:17813552-17813571 | Msa0153860:intron | 25.0% |
! | TTTGTCAATAAGTAGTTTAG+TGG | - | chr1_4:17813582-17813601 | Msa0153860:intron | 25.0% |
! | TTTAGAGATCAATATGGATT+TGG | - | chr1_4:17813757-17813776 | Msa0153860:intron | 25.0% |
!!! | TTAACTGAAATTTTTCAGAG+TGG | + | chr1_4:17813839-17813858 | None:intergenic | 25.0% |
! | TTAACTAAGTGGAAAAAAAG+TGG | - | chr1_4:17813928-17813947 | Msa0153860:intron | 25.0% |
! | TATTTAGAAGCTGAAAAATG+TGG | + | chr1_4:17813976-17813995 | None:intergenic | 25.0% |
!!! | ATTTTTCAGCTTCTAAATAG+TGG | - | chr1_4:17813977-17813996 | Msa0153860:intron | 25.0% |
! | TTACATAGAGAGTTTCTAAT+AGG | - | chr1_4:17814184-17814203 | Msa0153860:intron | 25.0% |
!!! | AAGTGGTTTTTTTTAATAGG+GGG | + | chr1_4:17814257-17814276 | None:intergenic | 25.0% |
!!! | GGAAAGTGGTTTTTTTTAAT+AGG | + | chr1_4:17814260-17814279 | None:intergenic | 25.0% |
!!! | GTGTATAAAGAGCTTTTTTT+TGG | + | chr1_4:17814500-17814519 | None:intergenic | 25.0% |
!!! | TCTAGTTTATAACAACGTTT+TGG | + | chr1_4:17814626-17814645 | None:intergenic | 25.0% |
! | TGATTTATTGGAACAATACA+AGG | - | chr1_4:17814646-17814665 | Msa0153860:intron | 25.0% |
! | AAACACAAAGTGAAGTTATT+TGG | - | chr1_4:17814847-17814866 | Msa0153860:intron | 25.0% |
! | AACAATAATTAAAAATCCGG+TGG | + | chr1_4:17815053-17815072 | None:intergenic | 25.0% |
! | TATTGTTTGTGATGAATTTG+AGG | - | chr1_4:17815066-17815085 | Msa0153860:intron | 25.0% |
! | ATTGTTTGTGATGAATTTGA+GGG | - | chr1_4:17815067-17815086 | Msa0153860:intron | 25.0% |
! | TTAATTAATTAAATGCCACG+TGG | - | chr1_4:17815459-17815478 | Msa0153860:CDS | 25.0% |
!!! | AGTGGTTTTTTTTTAATAGG+GGG | - | chr1_4:17815572-17815591 | Msa0153860:intron | 25.0% |
! | TTTGGATTATATAATTCCTG+AGG | - | chr1_4:17815837-17815856 | Msa0153860:CDS | 25.0% |
!! | ATTAGCACTCTATTTTACTT+TGG | - | chr1_4:17816156-17816175 | Msa0153860:CDS | 25.0% |
!! | TTTTGCACTTTCTCTAGTTT+TGG | + | chr1_4:17812154-17812173 | None:intergenic | 30.0% |
!!! | CGTTGTTACTATGTTTTAGT+AGG | - | chr1_4:17812256-17812275 | Msa0153860:three_prime_UTR | 30.0% |
AATTGGTCAATACTTTGCAT+TGG | - | chr1_4:17812527-17812546 | Msa0153860:CDS | 30.0% | |
TACTTTGCATTGGATAAAGA+TGG | - | chr1_4:17812537-17812556 | Msa0153860:CDS | 30.0% | |
! | GAAATTTTAAATTCGATCGC+TGG | - | chr1_4:17812849-17812868 | Msa0153860:intron | 30.0% |
! | GAAAATGGTCATTGTTGTTA+GGG | + | chr1_4:17812947-17812966 | None:intergenic | 30.0% |
! | TGAAAATGGTCATTGTTGTT+AGG | + | chr1_4:17812948-17812967 | None:intergenic | 30.0% |
! | GACCATTTTCATAAAGTTCA+TGG | - | chr1_4:17812957-17812976 | Msa0153860:intron | 30.0% |
!! | ATCACCGGCTTATAAATATT+TGG | - | chr1_4:17812980-17812999 | Msa0153860:intron | 30.0% |
!!! | TAATTTTGATTTACCCCAAG+TGG | - | chr1_4:17813187-17813206 | Msa0153860:intron | 30.0% |
TATATATTACCTGGATGAGT+TGG | + | chr1_4:17813224-17813243 | None:intergenic | 30.0% | |
ATTAGGAATCCTAGAAAGAA+TGG | - | chr1_4:17813329-17813348 | Msa0153860:intron | 30.0% | |
TTATTAGCGACCAAAAAATG+TGG | + | chr1_4:17813550-17813569 | None:intergenic | 30.0% | |
TTCTGTAAGTGTAACTCAAT+TGG | + | chr1_4:17813690-17813709 | None:intergenic | 30.0% | |
!! | ATTTTTCAGAGTGGTACAAA+GGG | + | chr1_4:17813830-17813849 | None:intergenic | 30.0% |
!! | AATTTTTCAGAGTGGTACAA+AGG | + | chr1_4:17813831-17813850 | None:intergenic | 30.0% |
GGTCACACAAATCATATATT+TGG | + | chr1_4:17813862-17813881 | None:intergenic | 30.0% | |
! | ACAAAAGAGTGTACACATTA+AGG | - | chr1_4:17814067-17814086 | Msa0153860:intron | 30.0% |
! | CAAAAGAGTGTACACATTAA+GGG | - | chr1_4:17814068-17814087 | Msa0153860:intron | 30.0% |
GTTTGAAGAAGATTAAGACA+AGG | + | chr1_4:17814582-17814601 | None:intergenic | 30.0% | |
!! | ACTATTGTGTGTTTTTATGG+TGG | + | chr1_4:17814689-17814708 | None:intergenic | 30.0% |
!! | TGCACTATTGTGTGTTTTTA+TGG | + | chr1_4:17814692-17814711 | None:intergenic | 30.0% |
AGAGAACACATAAACAAACA+AGG | - | chr1_4:17814730-17814749 | Msa0153860:intron | 30.0% | |
AACACATAAACAAACAAGGA+AGG | - | chr1_4:17814734-17814753 | Msa0153860:intron | 30.0% | |
! | TGGTGTTTTGTGTTACAATT+TGG | - | chr1_4:17814867-17814886 | Msa0153860:intron | 30.0% |
AATAATTAAAAATCCGGTGG+TGG | + | chr1_4:17815050-17815069 | None:intergenic | 30.0% | |
!!! | GTGAGTTTTGGTTTGAATTT+TGG | - | chr1_4:17815134-17815153 | Msa0153860:intron | 30.0% |
!!! | AGTTTTGGTTTGAATTTTGG+TGG | - | chr1_4:17815137-17815156 | Msa0153860:intron | 30.0% |
GAGAGAAAATTGAGAAGAAA+CGG | - | chr1_4:17815170-17815189 | Msa0153860:intron | 30.0% | |
!!! | ACTTGATTTTGTTTTCCCAT+AGG | - | chr1_4:17815238-17815257 | Msa0153860:intron | 30.0% |
!! | TTACAAGAAGCATTGAAGAA+TGG | + | chr1_4:17815268-17815287 | None:intergenic | 30.0% |
AAGATAGAAGGAAGAAGAAA+GGG | - | chr1_4:17815297-17815316 | Msa0153860:CDS | 30.0% | |
GAAGAAAGAAATAGAAACCA+GGG | - | chr1_4:17815343-17815362 | Msa0153860:CDS | 30.0% | |
AAGAAAGAAATAGAAACCAG+GGG | - | chr1_4:17815344-17815363 | Msa0153860:CDS | 30.0% | |
CCAACACAAGAATATTAGAA+AGG | + | chr1_4:17815646-17815665 | None:intergenic | 30.0% | |
CCTTTCTAATATTCTTGTGT+TGG | - | chr1_4:17815643-17815662 | Msa0153860:intron | 30.0% | |
!! | TTTAGCTTGTATGTCACAAT+TGG | - | chr1_4:17815743-17815762 | Msa0153860:intron | 30.0% |
!! | TTAGCTTGTATGTCACAATT+GGG | - | chr1_4:17815744-17815763 | Msa0153860:intron | 30.0% |
!! | CTCATGTTTTTAATACATGG+TGG | - | chr1_4:17815907-17815926 | Msa0153860:CDS | 30.0% |
!! | GTTTTTAATACATGGTGGAA+AGG | - | chr1_4:17815912-17815931 | Msa0153860:CDS | 30.0% |
ACTGCAAGCAATATGAAATT+TGG | + | chr1_4:17815986-17816005 | None:intergenic | 30.0% | |
! | AGATTACTGAGCATTTTACT+TGG | - | chr1_4:17816048-17816067 | Msa0153860:CDS | 30.0% |
!! | TTTTGCACTTTCTCTAGTTT+TGG | + | chr1_4:17812154-17812173 | None:intergenic | 30.0% |
!!! | CGTTGTTACTATGTTTTAGT+AGG | - | chr1_4:17812256-17812275 | Msa0153860:three_prime_UTR | 30.0% |
AATTGGTCAATACTTTGCAT+TGG | - | chr1_4:17812527-17812546 | Msa0153860:CDS | 30.0% | |
TACTTTGCATTGGATAAAGA+TGG | - | chr1_4:17812537-17812556 | Msa0153860:CDS | 30.0% | |
! | GAAATTTTAAATTCGATCGC+TGG | - | chr1_4:17812849-17812868 | Msa0153860:intron | 30.0% |
! | GAAAATGGTCATTGTTGTTA+GGG | + | chr1_4:17812947-17812966 | None:intergenic | 30.0% |
! | TGAAAATGGTCATTGTTGTT+AGG | + | chr1_4:17812948-17812967 | None:intergenic | 30.0% |
! | GACCATTTTCATAAAGTTCA+TGG | - | chr1_4:17812957-17812976 | Msa0153860:intron | 30.0% |
!! | ATCACCGGCTTATAAATATT+TGG | - | chr1_4:17812980-17812999 | Msa0153860:intron | 30.0% |
!!! | TAATTTTGATTTACCCCAAG+TGG | - | chr1_4:17813187-17813206 | Msa0153860:intron | 30.0% |
TATATATTACCTGGATGAGT+TGG | + | chr1_4:17813224-17813243 | None:intergenic | 30.0% | |
ATTAGGAATCCTAGAAAGAA+TGG | - | chr1_4:17813329-17813348 | Msa0153860:intron | 30.0% | |
TTATTAGCGACCAAAAAATG+TGG | + | chr1_4:17813550-17813569 | None:intergenic | 30.0% | |
TTCTGTAAGTGTAACTCAAT+TGG | + | chr1_4:17813690-17813709 | None:intergenic | 30.0% | |
!! | ATTTTTCAGAGTGGTACAAA+GGG | + | chr1_4:17813830-17813849 | None:intergenic | 30.0% |
!! | AATTTTTCAGAGTGGTACAA+AGG | + | chr1_4:17813831-17813850 | None:intergenic | 30.0% |
GGTCACACAAATCATATATT+TGG | + | chr1_4:17813862-17813881 | None:intergenic | 30.0% | |
! | ACAAAAGAGTGTACACATTA+AGG | - | chr1_4:17814067-17814086 | Msa0153860:intron | 30.0% |
! | CAAAAGAGTGTACACATTAA+GGG | - | chr1_4:17814068-17814087 | Msa0153860:intron | 30.0% |
GTTTGAAGAAGATTAAGACA+AGG | + | chr1_4:17814582-17814601 | None:intergenic | 30.0% | |
!! | ACTATTGTGTGTTTTTATGG+TGG | + | chr1_4:17814689-17814708 | None:intergenic | 30.0% |
!! | TGCACTATTGTGTGTTTTTA+TGG | + | chr1_4:17814692-17814711 | None:intergenic | 30.0% |
AGAGAACACATAAACAAACA+AGG | - | chr1_4:17814730-17814749 | Msa0153860:intron | 30.0% | |
AACACATAAACAAACAAGGA+AGG | - | chr1_4:17814734-17814753 | Msa0153860:intron | 30.0% | |
! | TGGTGTTTTGTGTTACAATT+TGG | - | chr1_4:17814867-17814886 | Msa0153860:intron | 30.0% |
AATAATTAAAAATCCGGTGG+TGG | + | chr1_4:17815050-17815069 | None:intergenic | 30.0% | |
!!! | GTGAGTTTTGGTTTGAATTT+TGG | - | chr1_4:17815134-17815153 | Msa0153860:intron | 30.0% |
!!! | AGTTTTGGTTTGAATTTTGG+TGG | - | chr1_4:17815137-17815156 | Msa0153860:intron | 30.0% |
GAGAGAAAATTGAGAAGAAA+CGG | - | chr1_4:17815170-17815189 | Msa0153860:intron | 30.0% | |
!!! | ACTTGATTTTGTTTTCCCAT+AGG | - | chr1_4:17815238-17815257 | Msa0153860:intron | 30.0% |
!! | TTACAAGAAGCATTGAAGAA+TGG | + | chr1_4:17815268-17815287 | None:intergenic | 30.0% |
AAGATAGAAGGAAGAAGAAA+GGG | - | chr1_4:17815297-17815316 | Msa0153860:CDS | 30.0% | |
GAAGAAAGAAATAGAAACCA+GGG | - | chr1_4:17815343-17815362 | Msa0153860:CDS | 30.0% | |
AAGAAAGAAATAGAAACCAG+GGG | - | chr1_4:17815344-17815363 | Msa0153860:CDS | 30.0% | |
CCAACACAAGAATATTAGAA+AGG | + | chr1_4:17815646-17815665 | None:intergenic | 30.0% | |
CCTTTCTAATATTCTTGTGT+TGG | - | chr1_4:17815643-17815662 | Msa0153860:intron | 30.0% | |
!! | TTTAGCTTGTATGTCACAAT+TGG | - | chr1_4:17815743-17815762 | Msa0153860:intron | 30.0% |
!! | TTAGCTTGTATGTCACAATT+GGG | - | chr1_4:17815744-17815763 | Msa0153860:intron | 30.0% |
!! | CTCATGTTTTTAATACATGG+TGG | - | chr1_4:17815907-17815926 | Msa0153860:CDS | 30.0% |
!! | GTTTTTAATACATGGTGGAA+AGG | - | chr1_4:17815912-17815931 | Msa0153860:CDS | 30.0% |
ACTGCAAGCAATATGAAATT+TGG | + | chr1_4:17815986-17816005 | None:intergenic | 30.0% | |
! | AGATTACTGAGCATTTTACT+TGG | - | chr1_4:17816048-17816067 | Msa0153860:CDS | 30.0% |
! | AAACTGAGTTTGTTTGGAGT+TGG | + | chr1_4:17812196-17812215 | None:intergenic | 35.0% |
! | TGTTGGAAACTGAGTTTGTT+TGG | + | chr1_4:17812202-17812221 | None:intergenic | 35.0% |
!! | TCAACTTTTTCTACCTCTGT+TGG | + | chr1_4:17812219-17812238 | None:intergenic | 35.0% |
ATAGCAGCATTTAGTATTGC+AGG | + | chr1_4:17812288-17812307 | None:intergenic | 35.0% | |
ACAATCTTCATTGGTACGAA+TGG | + | chr1_4:17812478-17812497 | None:intergenic | 35.0% | |
GTTTATGCTCTCTCATCAAT+TGG | - | chr1_4:17812510-17812529 | Msa0153860:CDS | 35.0% | |
TTTGCATTGGATAAAGATGG+AGG | - | chr1_4:17812540-17812559 | Msa0153860:CDS | 35.0% | |
AAACATCATGATATCCACGA+TGG | + | chr1_4:17812593-17812612 | None:intergenic | 35.0% | |
ATCGTGGATATCATGATGTT+TGG | - | chr1_4:17812592-17812611 | Msa0153860:CDS | 35.0% | |
! | GTTAACATTCCGGCTTTTTA+TGG | - | chr1_4:17812814-17812833 | Msa0153860:intron | 35.0% |
GATCTTCTTCCATAAAAAGC+CGG | + | chr1_4:17812826-17812845 | None:intergenic | 35.0% | |
TCATAAAGTTCATGGATCAC+CGG | - | chr1_4:17812965-17812984 | Msa0153860:intron | 35.0% | |
CTGGTCCATTAGAAATGAAA+AGG | - | chr1_4:17813051-17813070 | Msa0153860:intron | 35.0% | |
CACATTAATCTTTGCTTGCA+GGG | - | chr1_4:17813390-17813409 | Msa0153860:intron | 35.0% | |
!! | ATGTTTGAAAGTGTTCCAAG+TGG | - | chr1_4:17813434-17813453 | Msa0153860:intron | 35.0% |
CTCACTAACCTTTAGTAAGA+TGG | + | chr1_4:17813465-17813484 | None:intergenic | 35.0% | |
AGATTCACACACATAATGTG+TGG | - | chr1_4:17813607-17813626 | Msa0153860:intron | 35.0% | |
ACATAATGTGTGGAAAAGTG+CGG | - | chr1_4:17813617-17813636 | Msa0153860:intron | 35.0% | |
ACCAGAGAAATTATGTGCAA+GGG | + | chr1_4:17813662-17813681 | None:intergenic | 35.0% | |
TACCAGAGAAATTATGTGCA+AGG | + | chr1_4:17813663-17813682 | None:intergenic | 35.0% | |
!! | TTTTTCAGAGTGGTACAAAG+GGG | + | chr1_4:17813829-17813848 | None:intergenic | 35.0% |
GTCACGCAACTAAAAAAATG+TGG | + | chr1_4:17813883-17813902 | None:intergenic | 35.0% | |
GTCACGAAACTGAAAAAATG+TGG | - | chr1_4:17813999-17814018 | Msa0153860:intron | 35.0% | |
GGTCACACATAACATACATT+TGG | - | chr1_4:17814020-17814039 | Msa0153860:intron | 35.0% | |
! | TACACTCTTTTGTACCACTT+TGG | + | chr1_4:17814060-17814079 | None:intergenic | 35.0% |
TTGACCAAGTCAAAATCAGA+GGG | + | chr1_4:17815507-17815526 | None:intergenic | 35.0% | |
TTTGACCAAGTCAAAATCAG+AGG | + | chr1_4:17815506-17815525 | None:intergenic | 35.0% | |
!!! | ACGTTTTGGAGAAGATGTAA+TGG | + | chr1_4:17814612-17814631 | None:intergenic | 35.0% |
GTACCTCTGAACATAATTCA+AGG | + | chr1_4:17814894-17814913 | None:intergenic | 35.0% | |
TGTGATGAATTTGAGGGAAT+TGG | - | chr1_4:17815073-17815092 | Msa0153860:intron | 35.0% | |
GTGATGAATTTGAGGGAATT+GGG | - | chr1_4:17815074-17815093 | Msa0153860:intron | 35.0% | |
ATTTGAGGGAATTGGGTTAA+TGG | - | chr1_4:17815081-17815100 | Msa0153860:intron | 35.0% | |
TTTGAGGGAATTGGGTTAAT+GGG | - | chr1_4:17815082-17815101 | Msa0153860:intron | 35.0% | |
!! | TTGGTTTGAATTTTGGTGGA+AGG | - | chr1_4:17815141-17815160 | Msa0153860:intron | 35.0% |
!! | GAATTTTGGTGGAAGGAAAA+CGG | - | chr1_4:17815148-17815167 | Msa0153860:intron | 35.0% |
GGAGAGAAAAAGAGAAGAAA+AGG | - | chr1_4:17815191-17815210 | Msa0153860:intron | 35.0% | |
! | TTGAAGAATGGAGTACCTAT+GGG | + | chr1_4:17815256-17815275 | None:intergenic | 35.0% |
! | ATTGAAGAATGGAGTACCTA+TGG | + | chr1_4:17815257-17815276 | None:intergenic | 35.0% |
GAAGATAGAAGGAAGAAGAA+AGG | - | chr1_4:17815296-17815315 | Msa0153860:CDS | 35.0% | |
GGAAGAAAGAAATAGAAACC+AGG | - | chr1_4:17815342-17815361 | Msa0153860:CDS | 35.0% | |
TTTGACCAAGTCAAAATCAG+AGG | - | chr1_4:17815506-17815525 | Msa0153860:intron | 35.0% | |
TTGACCAAGTCAAAATCAGA+GGG | - | chr1_4:17815507-17815526 | Msa0153860:intron | 35.0% | |
! | GAAAGGCTAAAATGCACTTT+TGG | + | chr1_4:17815629-17815648 | None:intergenic | 35.0% |
! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_4:17815817-17815836 | None:intergenic | 35.0% |
! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_4:17815819-17815838 | Msa0153860:CDS | 35.0% |
! | TAGAGATTTTGCTTGGGTTT+GGG | + | chr1_4:17815864-17815883 | None:intergenic | 35.0% |
! | TTAGAGATTTTGCTTGGGTT+TGG | + | chr1_4:17815865-17815884 | None:intergenic | 35.0% |
! | CATGCTTAGAGATTTTGCTT+GGG | + | chr1_4:17815870-17815889 | None:intergenic | 35.0% |
! | AAACTGAGTTTGTTTGGAGT+TGG | + | chr1_4:17812196-17812215 | None:intergenic | 35.0% |
! | TGTTGGAAACTGAGTTTGTT+TGG | + | chr1_4:17812202-17812221 | None:intergenic | 35.0% |
!! | TCAACTTTTTCTACCTCTGT+TGG | + | chr1_4:17812219-17812238 | None:intergenic | 35.0% |
ATAGCAGCATTTAGTATTGC+AGG | + | chr1_4:17812288-17812307 | None:intergenic | 35.0% | |
ACAATCTTCATTGGTACGAA+TGG | + | chr1_4:17812478-17812497 | None:intergenic | 35.0% | |
GTTTATGCTCTCTCATCAAT+TGG | - | chr1_4:17812510-17812529 | Msa0153860:CDS | 35.0% | |
TTTGCATTGGATAAAGATGG+AGG | - | chr1_4:17812540-17812559 | Msa0153860:CDS | 35.0% | |
AAACATCATGATATCCACGA+TGG | + | chr1_4:17812593-17812612 | None:intergenic | 35.0% | |
ATCGTGGATATCATGATGTT+TGG | - | chr1_4:17812592-17812611 | Msa0153860:CDS | 35.0% | |
! | GTTAACATTCCGGCTTTTTA+TGG | - | chr1_4:17812814-17812833 | Msa0153860:intron | 35.0% |
GATCTTCTTCCATAAAAAGC+CGG | + | chr1_4:17812826-17812845 | None:intergenic | 35.0% | |
TCATAAAGTTCATGGATCAC+CGG | - | chr1_4:17812965-17812984 | Msa0153860:intron | 35.0% | |
CTGGTCCATTAGAAATGAAA+AGG | - | chr1_4:17813051-17813070 | Msa0153860:intron | 35.0% | |
CACATTAATCTTTGCTTGCA+GGG | - | chr1_4:17813390-17813409 | Msa0153860:intron | 35.0% | |
!! | ATGTTTGAAAGTGTTCCAAG+TGG | - | chr1_4:17813434-17813453 | Msa0153860:intron | 35.0% |
CTCACTAACCTTTAGTAAGA+TGG | + | chr1_4:17813465-17813484 | None:intergenic | 35.0% | |
AGATTCACACACATAATGTG+TGG | - | chr1_4:17813607-17813626 | Msa0153860:intron | 35.0% | |
ACATAATGTGTGGAAAAGTG+CGG | - | chr1_4:17813617-17813636 | Msa0153860:intron | 35.0% | |
ACCAGAGAAATTATGTGCAA+GGG | + | chr1_4:17813662-17813681 | None:intergenic | 35.0% | |
TACCAGAGAAATTATGTGCA+AGG | + | chr1_4:17813663-17813682 | None:intergenic | 35.0% | |
!! | TTTTTCAGAGTGGTACAAAG+GGG | + | chr1_4:17813829-17813848 | None:intergenic | 35.0% |
GTCACGCAACTAAAAAAATG+TGG | + | chr1_4:17813883-17813902 | None:intergenic | 35.0% | |
GTCACGAAACTGAAAAAATG+TGG | - | chr1_4:17813999-17814018 | Msa0153860:intron | 35.0% | |
GGTCACACATAACATACATT+TGG | - | chr1_4:17814020-17814039 | Msa0153860:intron | 35.0% | |
! | TACACTCTTTTGTACCACTT+TGG | + | chr1_4:17814060-17814079 | None:intergenic | 35.0% |
TTGACCAAGTCAAAATCAGA+GGG | + | chr1_4:17815507-17815526 | None:intergenic | 35.0% | |
TTTGACCAAGTCAAAATCAG+AGG | + | chr1_4:17815506-17815525 | None:intergenic | 35.0% | |
!!! | ACGTTTTGGAGAAGATGTAA+TGG | + | chr1_4:17814612-17814631 | None:intergenic | 35.0% |
GTACCTCTGAACATAATTCA+AGG | + | chr1_4:17814894-17814913 | None:intergenic | 35.0% | |
TGTGATGAATTTGAGGGAAT+TGG | - | chr1_4:17815073-17815092 | Msa0153860:intron | 35.0% | |
GTGATGAATTTGAGGGAATT+GGG | - | chr1_4:17815074-17815093 | Msa0153860:intron | 35.0% | |
ATTTGAGGGAATTGGGTTAA+TGG | - | chr1_4:17815081-17815100 | Msa0153860:intron | 35.0% | |
TTTGAGGGAATTGGGTTAAT+GGG | - | chr1_4:17815082-17815101 | Msa0153860:intron | 35.0% | |
!! | TTGGTTTGAATTTTGGTGGA+AGG | - | chr1_4:17815141-17815160 | Msa0153860:intron | 35.0% |
!! | GAATTTTGGTGGAAGGAAAA+CGG | - | chr1_4:17815148-17815167 | Msa0153860:intron | 35.0% |
GGAGAGAAAAAGAGAAGAAA+AGG | - | chr1_4:17815191-17815210 | Msa0153860:intron | 35.0% | |
! | TTGAAGAATGGAGTACCTAT+GGG | + | chr1_4:17815256-17815275 | None:intergenic | 35.0% |
! | ATTGAAGAATGGAGTACCTA+TGG | + | chr1_4:17815257-17815276 | None:intergenic | 35.0% |
GAAGATAGAAGGAAGAAGAA+AGG | - | chr1_4:17815296-17815315 | Msa0153860:CDS | 35.0% | |
GGAAGAAAGAAATAGAAACC+AGG | - | chr1_4:17815342-17815361 | Msa0153860:CDS | 35.0% | |
TTTGACCAAGTCAAAATCAG+AGG | - | chr1_4:17815506-17815525 | Msa0153860:intron | 35.0% | |
TTGACCAAGTCAAAATCAGA+GGG | - | chr1_4:17815507-17815526 | Msa0153860:intron | 35.0% | |
! | GAAAGGCTAAAATGCACTTT+TGG | + | chr1_4:17815629-17815648 | None:intergenic | 35.0% |
! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_4:17815817-17815836 | None:intergenic | 35.0% |
! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_4:17815819-17815838 | Msa0153860:CDS | 35.0% |
! | TAGAGATTTTGCTTGGGTTT+GGG | + | chr1_4:17815864-17815883 | None:intergenic | 35.0% |
! | TTAGAGATTTTGCTTGGGTT+TGG | + | chr1_4:17815865-17815884 | None:intergenic | 35.0% |
! | CATGCTTAGAGATTTTGCTT+GGG | + | chr1_4:17815870-17815889 | None:intergenic | 35.0% |
ACAAACTCAGTTTCCAACAG+AGG | - | chr1_4:17812203-17812222 | Msa0153860:three_prime_UTR | 40.0% | |
TCCAAATCAACACCCTGAAT+TGG | - | chr1_4:17812395-17812414 | Msa0153860:CDS | 40.0% | |
! | TGAACGTATGTTGACTGTGT+TGG | - | chr1_4:17812428-17812447 | Msa0153860:CDS | 40.0% |
GATAAAGATGGAGGCTCTTT+GGG | - | chr1_4:17812549-17812568 | Msa0153860:CDS | 40.0% | |
AACAAAGCAATGGCTCAATC+TGG | - | chr1_4:17813032-17813051 | Msa0153860:intron | 40.0% | |
! | GTCTCAACACTAGTTGATGT+AGG | - | chr1_4:17813104-17813123 | Msa0153860:intron | 40.0% |
! | TCAACACTAGTTGATGTAGG+TGG | - | chr1_4:17813107-17813126 | Msa0153860:intron | 40.0% |
GCACATTAATCTTTGCTTGC+AGG | - | chr1_4:17813389-17813408 | Msa0153860:intron | 40.0% | |
! | TGGTGATGCCATCTTACTAA+AGG | - | chr1_4:17813454-17813473 | Msa0153860:intron | 40.0% |
AAGGTTAGTGAGTACATGAG+AGG | - | chr1_4:17813473-17813492 | Msa0153860:intron | 40.0% | |
AGGTTAGTGAGTACATGAGA+GGG | - | chr1_4:17813474-17813493 | Msa0153860:intron | 40.0% | |
! | CAAAGGGGTGTACACATTAA+GGG | + | chr1_4:17813814-17813833 | None:intergenic | 40.0% |
! | ACAAAGGGGTGTACACATTA+AGG | + | chr1_4:17813815-17813834 | None:intergenic | 40.0% |
TTGCAAAAGGGGGTAAAGTT+GGG | + | chr1_4:17815540-17815559 | None:intergenic | 40.0% | |
TGACCAAGTCAAAATCAGAG+GGG | + | chr1_4:17815508-17815527 | None:intergenic | 40.0% | |
!!! | TTTTGACTTGGTCAAAGCAG+AGG | - | chr1_4:17814326-17814345 | Msa0153860:intron | 40.0% |
TAGTGAAGAGAGAAACGATG+AGG | + | chr1_4:17814477-17814496 | None:intergenic | 40.0% | |
TGTGTTTGAAGATGAGTGAG+TGG | + | chr1_4:17814834-17814853 | None:intergenic | 40.0% | |
GGTCCTTGAATTATGTTCAG+AGG | - | chr1_4:17814888-17814907 | Msa0153860:intron | 40.0% | |
ATGAAGATCTGGAAACGAGA+GGG | + | chr1_4:17815016-17815035 | None:intergenic | 40.0% | |
! | AATGGGTATGGTGATGAAGA+TGG | - | chr1_4:17815099-17815118 | Msa0153860:intron | 40.0% |
ATGAAGATGGTGCATGAAGT+TGG | - | chr1_4:17815112-17815131 | Msa0153860:intron | 40.0% | |
!!! | TGCATGAAGTTGGTGAGTTT+TGG | - | chr1_4:17815122-17815141 | Msa0153860:intron | 40.0% |
TTCTTCCCTCTGTTCTTTCA+CGG | + | chr1_4:17815329-17815348 | None:intergenic | 40.0% | |
! | CGGCTCAGATTCCTTTTAAT+TGG | - | chr1_4:17815385-17815404 | Msa0153860:CDS | 40.0% |
!!! | TTTTGACTTGGTCAAAGCAG+AGG | + | chr1_4:17814326-17814345 | None:intergenic | 40.0% |
TGACCAAGTCAAAATCAGAG+GGG | - | chr1_4:17815508-17815527 | Msa0153860:intron | 40.0% | |
TTGCAAAAGGGGGTAAAGTT+GGG | - | chr1_4:17815540-17815559 | Msa0153860:intron | 40.0% | |
CACAAAGCTTTGCCAAAACA+TGG | - | chr1_4:17815802-17815821 | Msa0153860:CDS | 40.0% | |
AGCTTTGCCAAAACATGGAA+AGG | - | chr1_4:17815807-17815826 | Msa0153860:CDS | 40.0% | |
! | GCATGCTTAGAGATTTTGCT+TGG | + | chr1_4:17815871-17815890 | None:intergenic | 40.0% |
CAAAACTTATGCATGAGCTC+TGG | - | chr1_4:17815955-17815974 | Msa0153860:CDS | 40.0% | |
AGTGATATCTCAGCTATGTC+TGG | - | chr1_4:17816003-17816022 | Msa0153860:CDS | 40.0% | |
ACAAACTCAGTTTCCAACAG+AGG | - | chr1_4:17812203-17812222 | Msa0153860:three_prime_UTR | 40.0% | |
TCCAAATCAACACCCTGAAT+TGG | - | chr1_4:17812395-17812414 | Msa0153860:CDS | 40.0% | |
! | TGAACGTATGTTGACTGTGT+TGG | - | chr1_4:17812428-17812447 | Msa0153860:CDS | 40.0% |
GATAAAGATGGAGGCTCTTT+GGG | - | chr1_4:17812549-17812568 | Msa0153860:CDS | 40.0% | |
AACAAAGCAATGGCTCAATC+TGG | - | chr1_4:17813032-17813051 | Msa0153860:intron | 40.0% | |
! | GTCTCAACACTAGTTGATGT+AGG | - | chr1_4:17813104-17813123 | Msa0153860:intron | 40.0% |
! | TCAACACTAGTTGATGTAGG+TGG | - | chr1_4:17813107-17813126 | Msa0153860:intron | 40.0% |
GCACATTAATCTTTGCTTGC+AGG | - | chr1_4:17813389-17813408 | Msa0153860:intron | 40.0% | |
! | TGGTGATGCCATCTTACTAA+AGG | - | chr1_4:17813454-17813473 | Msa0153860:intron | 40.0% |
AAGGTTAGTGAGTACATGAG+AGG | - | chr1_4:17813473-17813492 | Msa0153860:intron | 40.0% | |
AGGTTAGTGAGTACATGAGA+GGG | - | chr1_4:17813474-17813493 | Msa0153860:intron | 40.0% | |
! | CAAAGGGGTGTACACATTAA+GGG | + | chr1_4:17813814-17813833 | None:intergenic | 40.0% |
! | ACAAAGGGGTGTACACATTA+AGG | + | chr1_4:17813815-17813834 | None:intergenic | 40.0% |
TTGCAAAAGGGGGTAAAGTT+GGG | + | chr1_4:17815540-17815559 | None:intergenic | 40.0% | |
TGACCAAGTCAAAATCAGAG+GGG | + | chr1_4:17815508-17815527 | None:intergenic | 40.0% | |
!!! | TTTTGACTTGGTCAAAGCAG+AGG | - | chr1_4:17814326-17814345 | Msa0153860:intron | 40.0% |
TAGTGAAGAGAGAAACGATG+AGG | + | chr1_4:17814477-17814496 | None:intergenic | 40.0% | |
TGTGTTTGAAGATGAGTGAG+TGG | + | chr1_4:17814834-17814853 | None:intergenic | 40.0% | |
GGTCCTTGAATTATGTTCAG+AGG | - | chr1_4:17814888-17814907 | Msa0153860:intron | 40.0% | |
ATGAAGATCTGGAAACGAGA+GGG | + | chr1_4:17815016-17815035 | None:intergenic | 40.0% | |
! | AATGGGTATGGTGATGAAGA+TGG | - | chr1_4:17815099-17815118 | Msa0153860:intron | 40.0% |
ATGAAGATGGTGCATGAAGT+TGG | - | chr1_4:17815112-17815131 | Msa0153860:intron | 40.0% | |
!!! | TGCATGAAGTTGGTGAGTTT+TGG | - | chr1_4:17815122-17815141 | Msa0153860:intron | 40.0% |
TTCTTCCCTCTGTTCTTTCA+CGG | + | chr1_4:17815329-17815348 | None:intergenic | 40.0% | |
! | CGGCTCAGATTCCTTTTAAT+TGG | - | chr1_4:17815385-17815404 | Msa0153860:CDS | 40.0% |
!!! | TTTTGACTTGGTCAAAGCAG+AGG | + | chr1_4:17814326-17814345 | None:intergenic | 40.0% |
TGACCAAGTCAAAATCAGAG+GGG | - | chr1_4:17815508-17815527 | Msa0153860:intron | 40.0% | |
TTGCAAAAGGGGGTAAAGTT+GGG | - | chr1_4:17815540-17815559 | Msa0153860:intron | 40.0% | |
CACAAAGCTTTGCCAAAACA+TGG | - | chr1_4:17815802-17815821 | Msa0153860:CDS | 40.0% | |
AGCTTTGCCAAAACATGGAA+AGG | - | chr1_4:17815807-17815826 | Msa0153860:CDS | 40.0% | |
! | GCATGCTTAGAGATTTTGCT+TGG | + | chr1_4:17815871-17815890 | None:intergenic | 40.0% |
CAAAACTTATGCATGAGCTC+TGG | - | chr1_4:17815955-17815974 | Msa0153860:CDS | 40.0% | |
AGTGATATCTCAGCTATGTC+TGG | - | chr1_4:17816003-17816022 | Msa0153860:CDS | 40.0% | |
!! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1_4:17812399-17812418 | None:intergenic | 45.0% |
GGATAAAGATGGAGGCTCTT+TGG | - | chr1_4:17812548-17812567 | Msa0153860:CDS | 45.0% | |
!! | CGATGGATTAATGCTGAGAG+TGG | + | chr1_4:17812576-17812595 | None:intergenic | 45.0% |
CTCTCAGCATTAATCCATCG+TGG | - | chr1_4:17812576-17812595 | Msa0153860:CDS | 45.0% | |
! | ACACTAGTTGATGTAGGTGG+TGG | - | chr1_4:17813110-17813129 | Msa0153860:intron | 45.0% |
!! | TTGATGTAGGTGGTGGAGTA+GGG | - | chr1_4:17813117-17813136 | Msa0153860:intron | 45.0% |
TGGTGCATCTTGAACCACTT+GGG | + | chr1_4:17813204-17813223 | None:intergenic | 45.0% | |
TTGGTGCATCTTGAACCACT+TGG | + | chr1_4:17813205-17813224 | None:intergenic | 45.0% | |
AGTAAGATGGCATCACCACT+TGG | + | chr1_4:17813452-17813471 | None:intergenic | 45.0% | |
! | TGTGGAAAAGTGCGGAATCT+GGG | - | chr1_4:17813625-17813644 | Msa0153860:intron | 45.0% |
GCCCTTGCACATAATTTCTC+TGG | - | chr1_4:17813658-17813677 | Msa0153860:intron | 45.0% | |
! | GCACTTTTGACCCCTAAGTT+TGG | - | chr1_4:17814214-17814233 | Msa0153860:intron | 45.0% |
TGCAAAAGGGGGTAAAGTTG+GGG | + | chr1_4:17815541-17815560 | None:intergenic | 45.0% | |
GTTGCAAAAGGGGGTAAAGT+TGG | + | chr1_4:17815539-17815558 | None:intergenic | 45.0% | |
! | TACCCCCTTTTGCAACTCAT+AGG | - | chr1_4:17814293-17814312 | Msa0153860:intron | 45.0% |
GACCTATGAGTTGCAAAAGG+GGG | + | chr1_4:17815530-17815549 | None:intergenic | 45.0% | |
GGACCTATGAGTTGCAAAAG+GGG | + | chr1_4:17815529-17815548 | None:intergenic | 45.0% | |
GGGACCTATGAGTTGCAAAA+GGG | + | chr1_4:17815528-17815547 | None:intergenic | 45.0% | |
AAGCAGAGGTGACCAATAGA+TGG | - | chr1_4:17814340-17814359 | Msa0153860:intron | 45.0% | |
AAGAGAGAAACGATGAGGTG+GGG | + | chr1_4:17814472-17814491 | None:intergenic | 45.0% | |
GAAGAGAGAAACGATGAGGT+GGG | + | chr1_4:17814473-17814492 | None:intergenic | 45.0% | |
TGAAGAGAGAAACGATGAGG+TGG | + | chr1_4:17814474-17814493 | None:intergenic | 45.0% | |
! | TGTTGTGCTGTGGTGTTTTG+GGG | + | chr1_4:17814553-17814572 | None:intergenic | 45.0% |
! | GTGTTGTGCTGTGGTGTTTT+GGG | + | chr1_4:17814554-17814573 | None:intergenic | 45.0% |
! | TGTGTTGTGCTGTGGTGTTT+TGG | + | chr1_4:17814555-17814574 | None:intergenic | 45.0% |
AAGGTTGTTGTGTTGTGCTG+TGG | + | chr1_4:17814563-17814582 | None:intergenic | 45.0% | |
! | ACAAGTGCCGTTACACAGTA+TGG | - | chr1_4:17814938-17814957 | Msa0153860:CDS | 45.0% |
ATCCTGGCCATACTGTGTAA+CGG | + | chr1_4:17814948-17814967 | None:intergenic | 45.0% | |
CATGAAGATCTGGAAACGAG+AGG | + | chr1_4:17815017-17815036 | None:intergenic | 45.0% | |
! | GGGAATTGGGTTAATGGGTA+TGG | - | chr1_4:17815087-17815106 | Msa0153860:intron | 45.0% |
AAACTGCCGTGAAAGAACAG+AGG | - | chr1_4:17815320-17815339 | Msa0153860:CDS | 45.0% | |
AACTGCCGTGAAAGAACAGA+GGG | - | chr1_4:17815321-17815340 | Msa0153860:CDS | 45.0% | |
CGAAAAGACTTAAATGCCCC+TGG | + | chr1_4:17815363-17815382 | None:intergenic | 45.0% | |
! | GGCATTTAAGTCTTTTCGCG+CGG | - | chr1_4:17815365-17815384 | Msa0153860:CDS | 45.0% |
AAGCAGAGGTGACCAATAGA+TGG | + | chr1_4:17814340-17814359 | None:intergenic | 45.0% | |
GGGACCTATGAGTTGCAAAA+GGG | - | chr1_4:17815528-17815547 | Msa0153860:intron | 45.0% | |
GGACCTATGAGTTGCAAAAG+GGG | - | chr1_4:17815529-17815548 | Msa0153860:intron | 45.0% | |
GACCTATGAGTTGCAAAAGG+GGG | - | chr1_4:17815530-17815549 | Msa0153860:intron | 45.0% | |
! | TACCCCCTTTTGCAACTCAT+AGG | + | chr1_4:17814293-17814312 | None:intergenic | 45.0% |
GTTGCAAAAGGGGGTAAAGT+TGG | - | chr1_4:17815539-17815558 | Msa0153860:intron | 45.0% | |
TGCAAAAGGGGGTAAAGTTG+GGG | - | chr1_4:17815541-17815560 | Msa0153860:intron | 45.0% | |
! | CACTTTTGGTCCCCTAAGTT+TGG | + | chr1_4:17815615-17815634 | None:intergenic | 45.0% |
! | CTCAGCTATGTCTGGAGTAA+TGG | - | chr1_4:17816011-17816030 | Msa0153860:CDS | 45.0% |
!! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1_4:17812399-17812418 | None:intergenic | 45.0% |
GGATAAAGATGGAGGCTCTT+TGG | - | chr1_4:17812548-17812567 | Msa0153860:CDS | 45.0% | |
!! | CGATGGATTAATGCTGAGAG+TGG | + | chr1_4:17812576-17812595 | None:intergenic | 45.0% |
CTCTCAGCATTAATCCATCG+TGG | - | chr1_4:17812576-17812595 | Msa0153860:CDS | 45.0% | |
! | ACACTAGTTGATGTAGGTGG+TGG | - | chr1_4:17813110-17813129 | Msa0153860:intron | 45.0% |
!! | TTGATGTAGGTGGTGGAGTA+GGG | - | chr1_4:17813117-17813136 | Msa0153860:intron | 45.0% |
TGGTGCATCTTGAACCACTT+GGG | + | chr1_4:17813204-17813223 | None:intergenic | 45.0% | |
TTGGTGCATCTTGAACCACT+TGG | + | chr1_4:17813205-17813224 | None:intergenic | 45.0% | |
AGTAAGATGGCATCACCACT+TGG | + | chr1_4:17813452-17813471 | None:intergenic | 45.0% | |
! | TGTGGAAAAGTGCGGAATCT+GGG | - | chr1_4:17813625-17813644 | Msa0153860:intron | 45.0% |
GCCCTTGCACATAATTTCTC+TGG | - | chr1_4:17813658-17813677 | Msa0153860:intron | 45.0% | |
! | GCACTTTTGACCCCTAAGTT+TGG | - | chr1_4:17814214-17814233 | Msa0153860:intron | 45.0% |
TGCAAAAGGGGGTAAAGTTG+GGG | + | chr1_4:17815541-17815560 | None:intergenic | 45.0% | |
GTTGCAAAAGGGGGTAAAGT+TGG | + | chr1_4:17815539-17815558 | None:intergenic | 45.0% | |
! | TACCCCCTTTTGCAACTCAT+AGG | - | chr1_4:17814293-17814312 | Msa0153860:intron | 45.0% |
GACCTATGAGTTGCAAAAGG+GGG | + | chr1_4:17815530-17815549 | None:intergenic | 45.0% | |
GGACCTATGAGTTGCAAAAG+GGG | + | chr1_4:17815529-17815548 | None:intergenic | 45.0% | |
GGGACCTATGAGTTGCAAAA+GGG | + | chr1_4:17815528-17815547 | None:intergenic | 45.0% | |
AAGCAGAGGTGACCAATAGA+TGG | - | chr1_4:17814340-17814359 | Msa0153860:intron | 45.0% | |
AAGAGAGAAACGATGAGGTG+GGG | + | chr1_4:17814472-17814491 | None:intergenic | 45.0% | |
GAAGAGAGAAACGATGAGGT+GGG | + | chr1_4:17814473-17814492 | None:intergenic | 45.0% | |
TGAAGAGAGAAACGATGAGG+TGG | + | chr1_4:17814474-17814493 | None:intergenic | 45.0% | |
! | TGTTGTGCTGTGGTGTTTTG+GGG | + | chr1_4:17814553-17814572 | None:intergenic | 45.0% |
! | GTGTTGTGCTGTGGTGTTTT+GGG | + | chr1_4:17814554-17814573 | None:intergenic | 45.0% |
! | TGTGTTGTGCTGTGGTGTTT+TGG | + | chr1_4:17814555-17814574 | None:intergenic | 45.0% |
AAGGTTGTTGTGTTGTGCTG+TGG | + | chr1_4:17814563-17814582 | None:intergenic | 45.0% | |
! | ACAAGTGCCGTTACACAGTA+TGG | - | chr1_4:17814938-17814957 | Msa0153860:CDS | 45.0% |
ATCCTGGCCATACTGTGTAA+CGG | + | chr1_4:17814948-17814967 | None:intergenic | 45.0% | |
CATGAAGATCTGGAAACGAG+AGG | + | chr1_4:17815017-17815036 | None:intergenic | 45.0% | |
! | GGGAATTGGGTTAATGGGTA+TGG | - | chr1_4:17815087-17815106 | Msa0153860:intron | 45.0% |
AAACTGCCGTGAAAGAACAG+AGG | - | chr1_4:17815320-17815339 | Msa0153860:CDS | 45.0% | |
AACTGCCGTGAAAGAACAGA+GGG | - | chr1_4:17815321-17815340 | Msa0153860:CDS | 45.0% | |
CGAAAAGACTTAAATGCCCC+TGG | + | chr1_4:17815363-17815382 | None:intergenic | 45.0% | |
! | GGCATTTAAGTCTTTTCGCG+CGG | - | chr1_4:17815365-17815384 | Msa0153860:CDS | 45.0% |
AAGCAGAGGTGACCAATAGA+TGG | + | chr1_4:17814340-17814359 | None:intergenic | 45.0% | |
GGGACCTATGAGTTGCAAAA+GGG | - | chr1_4:17815528-17815547 | Msa0153860:intron | 45.0% | |
GGACCTATGAGTTGCAAAAG+GGG | - | chr1_4:17815529-17815548 | Msa0153860:intron | 45.0% | |
GACCTATGAGTTGCAAAAGG+GGG | - | chr1_4:17815530-17815549 | Msa0153860:intron | 45.0% | |
! | TACCCCCTTTTGCAACTCAT+AGG | + | chr1_4:17814293-17814312 | None:intergenic | 45.0% |
GTTGCAAAAGGGGGTAAAGT+TGG | - | chr1_4:17815539-17815558 | Msa0153860:intron | 45.0% | |
TGCAAAAGGGGGTAAAGTTG+GGG | - | chr1_4:17815541-17815560 | Msa0153860:intron | 45.0% | |
! | CACTTTTGGTCCCCTAAGTT+TGG | + | chr1_4:17815615-17815634 | None:intergenic | 45.0% |
! | CTCAGCTATGTCTGGAGTAA+TGG | - | chr1_4:17816011-17816030 | Msa0153860:CDS | 45.0% |
!! | ATAAAAAAAAAGAATTAAAA+AGG | - | chr1_4:17814440-17814459 | Msa0153860:intron | 5.0% |
!! | ATAAAAAAAAAGAATTAAAA+AGG | - | chr1_4:17814440-17814459 | Msa0153860:intron | 5.0% |
AACACCCTGAATTGGCTGAG+AGG | - | chr1_4:17812403-17812422 | Msa0153860:CDS | 50.0% | |
CAAGCCTCTCAGCCAATTCA+GGG | + | chr1_4:17812410-17812429 | None:intergenic | 50.0% | |
TCAAGCCTCTCAGCCAATTC+AGG | + | chr1_4:17812411-17812430 | None:intergenic | 50.0% | |
!! | GTTGATGTAGGTGGTGGAGT+AGG | - | chr1_4:17813116-17813135 | Msa0153860:intron | 50.0% |
GGTGCATCTTGAACCACTTG+GGG | + | chr1_4:17813203-17813222 | None:intergenic | 50.0% | |
CAAGATGCACCAACTCATCC+AGG | - | chr1_4:17813212-17813231 | Msa0153860:intron | 50.0% | |
GCAGGGATAGAGCATGTTGA+AGG | - | chr1_4:17813407-17813426 | Msa0153860:intron | 50.0% | |
! | GTGTGGAAAAGTGCGGAATC+TGG | - | chr1_4:17813624-17813643 | Msa0153860:intron | 50.0% |
! | GTGGAAAAGTGCGGAATCTG+GGG | - | chr1_4:17813626-17813645 | Msa0153860:intron | 50.0% |
TTTGACCCCTAAGTTTGGCC+AGG | - | chr1_4:17814219-17814238 | Msa0153860:intron | 50.0% | |
TTGACCCCTAAGTTTGGCCA+GGG | - | chr1_4:17814220-17814239 | Msa0153860:intron | 50.0% | |
CAAAAGGGGGTAAAGTTGGG+GGG | + | chr1_4:17815543-17815562 | None:intergenic | 50.0% | |
GCAAAAGGGGGTAAAGTTGG+GGG | + | chr1_4:17815542-17815561 | None:intergenic | 50.0% | |
GGGGACCTATGAGTTGCAAA+AGG | + | chr1_4:17815527-17815546 | None:intergenic | 50.0% | |
!!! | GGTCCCCTCTGATTTTGACT+TGG | - | chr1_4:17814314-17814333 | Msa0153860:intron | 50.0% |
GCAAGCTTCTTGTGCTGTGA+TGG | + | chr1_4:17814524-17814543 | None:intergenic | 50.0% | |
GTATGGCCAGGATTACTCTC+CGG | - | chr1_4:17814955-17814974 | Msa0153860:CDS | 50.0% | |
TGGAAACGAGAGGGTGAATC+CGG | + | chr1_4:17815007-17815026 | None:intergenic | 50.0% | |
!!! | GGTCCCCTCTGATTTTGACT+TGG | + | chr1_4:17814314-17814333 | None:intergenic | 50.0% |
GGGGACCTATGAGTTGCAAA+AGG | - | chr1_4:17815527-17815546 | Msa0153860:intron | 50.0% | |
GCAAAAGGGGGTAAAGTTGG+GGG | - | chr1_4:17815542-17815561 | Msa0153860:intron | 50.0% | |
CAAAAGGGGGTAAAGTTGGG+GGG | - | chr1_4:17815543-17815562 | Msa0153860:intron | 50.0% | |
AACACCCTGAATTGGCTGAG+AGG | - | chr1_4:17812403-17812422 | Msa0153860:CDS | 50.0% | |
CAAGCCTCTCAGCCAATTCA+GGG | + | chr1_4:17812410-17812429 | None:intergenic | 50.0% | |
TCAAGCCTCTCAGCCAATTC+AGG | + | chr1_4:17812411-17812430 | None:intergenic | 50.0% | |
!! | GTTGATGTAGGTGGTGGAGT+AGG | - | chr1_4:17813116-17813135 | Msa0153860:intron | 50.0% |
GGTGCATCTTGAACCACTTG+GGG | + | chr1_4:17813203-17813222 | None:intergenic | 50.0% | |
CAAGATGCACCAACTCATCC+AGG | - | chr1_4:17813212-17813231 | Msa0153860:intron | 50.0% | |
GCAGGGATAGAGCATGTTGA+AGG | - | chr1_4:17813407-17813426 | Msa0153860:intron | 50.0% | |
! | GTGTGGAAAAGTGCGGAATC+TGG | - | chr1_4:17813624-17813643 | Msa0153860:intron | 50.0% |
! | GTGGAAAAGTGCGGAATCTG+GGG | - | chr1_4:17813626-17813645 | Msa0153860:intron | 50.0% |
TTTGACCCCTAAGTTTGGCC+AGG | - | chr1_4:17814219-17814238 | Msa0153860:intron | 50.0% | |
TTGACCCCTAAGTTTGGCCA+GGG | - | chr1_4:17814220-17814239 | Msa0153860:intron | 50.0% | |
CAAAAGGGGGTAAAGTTGGG+GGG | + | chr1_4:17815543-17815562 | None:intergenic | 50.0% | |
GCAAAAGGGGGTAAAGTTGG+GGG | + | chr1_4:17815542-17815561 | None:intergenic | 50.0% | |
GGGGACCTATGAGTTGCAAA+AGG | + | chr1_4:17815527-17815546 | None:intergenic | 50.0% | |
!!! | GGTCCCCTCTGATTTTGACT+TGG | - | chr1_4:17814314-17814333 | Msa0153860:intron | 50.0% |
GCAAGCTTCTTGTGCTGTGA+TGG | + | chr1_4:17814524-17814543 | None:intergenic | 50.0% | |
GTATGGCCAGGATTACTCTC+CGG | - | chr1_4:17814955-17814974 | Msa0153860:CDS | 50.0% | |
TGGAAACGAGAGGGTGAATC+CGG | + | chr1_4:17815007-17815026 | None:intergenic | 50.0% | |
!!! | GGTCCCCTCTGATTTTGACT+TGG | + | chr1_4:17814314-17814333 | None:intergenic | 50.0% |
GGGGACCTATGAGTTGCAAA+AGG | - | chr1_4:17815527-17815546 | Msa0153860:intron | 50.0% | |
GCAAAAGGGGGTAAAGTTGG+GGG | - | chr1_4:17815542-17815561 | Msa0153860:intron | 50.0% | |
CAAAAGGGGGTAAAGTTGGG+GGG | - | chr1_4:17815543-17815562 | Msa0153860:intron | 50.0% | |
TCGCTCCCTGGCCAAACTTA+GGG | + | chr1_4:17815601-17815620 | None:intergenic | 55.0% | |
ATCGCTCCCTGGCCAAACTT+AGG | + | chr1_4:17815600-17815619 | None:intergenic | 55.0% | |
! | GTTTGGCCAGGGAGCGATTT+TGG | - | chr1_4:17814231-17814250 | Msa0153860:intron | 55.0% |
AAAGTTGGGGGGCTGGAAAG+TGG | + | chr1_4:17815554-17815573 | None:intergenic | 55.0% | |
GTCACGTGGCGTCCATCTAT+TGG | + | chr1_4:17814355-17814374 | None:intergenic | 55.0% | |
TGCCGTTACACAGTATGGCC+AGG | - | chr1_4:17814943-17814962 | Msa0153860:CDS | 55.0% | |
AAACGAGAGGGTGAATCCGG+TGG | + | chr1_4:17815004-17815023 | None:intergenic | 55.0% | |
! | CACGTGAGGGCATGAAGATC+TGG | + | chr1_4:17815027-17815046 | None:intergenic | 55.0% |
ACCAATAGATGGACGCCACG+TGG | + | chr1_4:17814351-17814370 | None:intergenic | 55.0% | |
AAAGTTGGGGGGCTGGAAAG+TGG | - | chr1_4:17815554-17815573 | Msa0153860:intron | 55.0% | |
! | GTTTGGCCAGGGAGCGATTT+TGG | + | chr1_4:17814231-17814250 | None:intergenic | 55.0% |
ATCGCTCCCTGGCCAAACTT+AGG | - | chr1_4:17815600-17815619 | Msa0153860:intron | 55.0% | |
TCGCTCCCTGGCCAAACTTA+GGG | - | chr1_4:17815601-17815620 | Msa0153860:intron | 55.0% | |
TGGTCCCCTAAGTTTGGCCA+GGG | + | chr1_4:17815609-17815628 | None:intergenic | 55.0% | |
TTGGTCCCCTAAGTTTGGCC+AGG | + | chr1_4:17815610-17815629 | None:intergenic | 55.0% | |
! | TTGCTTGGGTTTGGGACCTC+AGG | + | chr1_4:17815856-17815875 | None:intergenic | 55.0% |
TCGCTCCCTGGCCAAACTTA+GGG | + | chr1_4:17815601-17815620 | None:intergenic | 55.0% | |
ATCGCTCCCTGGCCAAACTT+AGG | + | chr1_4:17815600-17815619 | None:intergenic | 55.0% | |
! | GTTTGGCCAGGGAGCGATTT+TGG | - | chr1_4:17814231-17814250 | Msa0153860:intron | 55.0% |
AAAGTTGGGGGGCTGGAAAG+TGG | + | chr1_4:17815554-17815573 | None:intergenic | 55.0% | |
GTCACGTGGCGTCCATCTAT+TGG | + | chr1_4:17814355-17814374 | None:intergenic | 55.0% | |
TGCCGTTACACAGTATGGCC+AGG | - | chr1_4:17814943-17814962 | Msa0153860:CDS | 55.0% | |
AAACGAGAGGGTGAATCCGG+TGG | + | chr1_4:17815004-17815023 | None:intergenic | 55.0% | |
! | CACGTGAGGGCATGAAGATC+TGG | + | chr1_4:17815027-17815046 | None:intergenic | 55.0% |
ACCAATAGATGGACGCCACG+TGG | + | chr1_4:17814351-17814370 | None:intergenic | 55.0% | |
AAAGTTGGGGGGCTGGAAAG+TGG | - | chr1_4:17815554-17815573 | Msa0153860:intron | 55.0% | |
! | GTTTGGCCAGGGAGCGATTT+TGG | + | chr1_4:17814231-17814250 | None:intergenic | 55.0% |
ATCGCTCCCTGGCCAAACTT+AGG | - | chr1_4:17815600-17815619 | Msa0153860:intron | 55.0% | |
TCGCTCCCTGGCCAAACTTA+GGG | - | chr1_4:17815601-17815620 | Msa0153860:intron | 55.0% | |
TGGTCCCCTAAGTTTGGCCA+GGG | + | chr1_4:17815609-17815628 | None:intergenic | 55.0% | |
TTGGTCCCCTAAGTTTGGCC+AGG | + | chr1_4:17815610-17815629 | None:intergenic | 55.0% | |
! | TTGCTTGGGTTTGGGACCTC+AGG | + | chr1_4:17815856-17815875 | None:intergenic | 55.0% |
CGCTCCCTGGCCAAACTTAG+GGG | + | chr1_4:17815602-17815621 | None:intergenic | 60.0% | |
! | GTAGCGCCGGAGAGTAATCC+TGG | + | chr1_4:17814964-17814983 | None:intergenic | 60.0% |
!! | GTGAATCCGGTGGTGGGTAG+CGG | + | chr1_4:17814994-17815013 | None:intergenic | 60.0% |
GAGAGGGTGAATCCGGTGGT+GGG | + | chr1_4:17815000-17815019 | None:intergenic | 60.0% | |
! | AATCCGGTGGTGGCACGTGA+GGG | + | chr1_4:17815040-17815059 | None:intergenic | 60.0% |
! | AAATCCGGTGGTGGCACGTG+AGG | + | chr1_4:17815041-17815060 | None:intergenic | 60.0% |
GCCACGTGGCGTCCATCTAT+TGG | - | chr1_4:17815473-17815492 | Msa0153860:intron | 60.0% | |
CGCTCCCTGGCCAAACTTAG+GGG | - | chr1_4:17815602-17815621 | Msa0153860:intron | 60.0% | |
CGCTCCCTGGCCAAACTTAG+GGG | + | chr1_4:17815602-17815621 | None:intergenic | 60.0% | |
! | GTAGCGCCGGAGAGTAATCC+TGG | + | chr1_4:17814964-17814983 | None:intergenic | 60.0% |
!! | GTGAATCCGGTGGTGGGTAG+CGG | + | chr1_4:17814994-17815013 | None:intergenic | 60.0% |
GAGAGGGTGAATCCGGTGGT+GGG | + | chr1_4:17815000-17815019 | None:intergenic | 60.0% | |
! | AATCCGGTGGTGGCACGTGA+GGG | + | chr1_4:17815040-17815059 | None:intergenic | 60.0% |
! | AAATCCGGTGGTGGCACGTG+AGG | + | chr1_4:17815041-17815060 | None:intergenic | 60.0% |
GCCACGTGGCGTCCATCTAT+TGG | - | chr1_4:17815473-17815492 | Msa0153860:intron | 60.0% | |
CGCTCCCTGGCCAAACTTAG+GGG | - | chr1_4:17815602-17815621 | Msa0153860:intron | 60.0% | |
AGGGGGCCAAAATCGCTCCC+TGG | + | chr1_4:17815589-17815608 | None:intergenic | 65.0% | |
AGGGGGTAAAGTTGGGGGGC+TGG | + | chr1_4:17815547-17815566 | None:intergenic | 65.0% | |
TAGCGGCGGTGAAGTAGCGC+CGG | + | chr1_4:17814977-17814996 | None:intergenic | 65.0% | |
!! | AATCCGGTGGTGGGTAGCGG+CGG | + | chr1_4:17814991-17815010 | None:intergenic | 65.0% |
CGAGAGGGTGAATCCGGTGG+TGG | + | chr1_4:17815001-17815020 | None:intergenic | 65.0% | |
ATGCCCTCACGTGCCACCAC+CGG | - | chr1_4:17815034-17815053 | Msa0153860:intron | 65.0% | |
AGGGGGTAAAGTTGGGGGGC+TGG | - | chr1_4:17815547-17815566 | Msa0153860:intron | 65.0% | |
AGGGGGCCAAAATCGCTCCC+TGG | - | chr1_4:17815589-17815608 | Msa0153860:intron | 65.0% | |
AGGGGGCCAAAATCGCTCCC+TGG | + | chr1_4:17815589-17815608 | None:intergenic | 65.0% | |
AGGGGGTAAAGTTGGGGGGC+TGG | + | chr1_4:17815547-17815566 | None:intergenic | 65.0% | |
TAGCGGCGGTGAAGTAGCGC+CGG | + | chr1_4:17814977-17814996 | None:intergenic | 65.0% | |
!! | AATCCGGTGGTGGGTAGCGG+CGG | + | chr1_4:17814991-17815010 | None:intergenic | 65.0% |
CGAGAGGGTGAATCCGGTGG+TGG | + | chr1_4:17815001-17815020 | None:intergenic | 65.0% | |
ATGCCCTCACGTGCCACCAC+CGG | - | chr1_4:17815034-17815053 | Msa0153860:intron | 65.0% | |
AGGGGGTAAAGTTGGGGGGC+TGG | - | chr1_4:17815547-17815566 | Msa0153860:intron | 65.0% | |
AGGGGGCCAAAATCGCTCCC+TGG | - | chr1_4:17815589-17815608 | Msa0153860:intron | 65.0% | |
TCACCGCCGCTACCCACCAC+CGG | - | chr1_4:17814985-17815004 | Msa0153860:intron | 70.0% | |
TCACCGCCGCTACCCACCAC+CGG | - | chr1_4:17814985-17815004 | Msa0153860:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 17812139 | 17816256 | 17812139 | ID=Msa0153860;Name=Msa0153860 |
chr1_4 | mRNA | 17812139 | 17816256 | 17812139 | ID=Msa0153860-mRNA-1;Parent=Msa0153860;Name=Msa0153860-mRNA-1;_AED=0.10;_eAED=0.10;_QI=47|0.66|0.75|1|1|1|4|209|333 |
chr1_4 | exon | 17812139 | 17812647 | 17812139 | ID=Msa0153860-mRNA-1:exon:6704;Parent=Msa0153860-mRNA-1 |
chr1_4 | exon | 17814920 | 17814984 | 17814920 | ID=Msa0153860-mRNA-1:exon:6703;Parent=Msa0153860-mRNA-1 |
chr1_4 | exon | 17815270 | 17815478 | 17815270 | ID=Msa0153860-mRNA-1:exon:6702;Parent=Msa0153860-mRNA-1 |
chr1_4 | exon | 17815782 | 17816256 | 17815782 | ID=Msa0153860-mRNA-1:exon:6701;Parent=Msa0153860-mRNA-1 |
chr1_4 | five_prime_UTR | 17816210 | 17816256 | 17816210 | ID=Msa0153860-mRNA-1:five_prime_utr;Parent=Msa0153860-mRNA-1 |
chr1_4 | CDS | 17815782 | 17816209 | 17815782 | ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1 |
chr1_4 | CDS | 17815270 | 17815478 | 17815270 | ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1 |
chr1_4 | CDS | 17814920 | 17814984 | 17814920 | ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1 |
chr1_4 | CDS | 17812348 | 17812647 | 17812348 | ID=Msa0153860-mRNA-1:cds;Parent=Msa0153860-mRNA-1 |
chr1_4 | three_prime_UTR | 17812139 | 17812347 | 17812139 | ID=Msa0153860-mRNA-1:three_prime_utr;Parent=Msa0153860-mRNA-1 |
Gene Sequence |
Protein sequence |