Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970410 | XP_013450758.3 | 80.335 | 239 | 31 | 4 | 2 | 228 | 111 | 345 | 9.94e-130 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970410 | sp|Q6BPT6|AIM32_DEBHA | 40.952 | 105 | 58 | 2 | 59 | 163 | 173 | 273 | 6.31e-19 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970410 | A0A396HEH8 | 80.335 | 239 | 31 | 4 | 2 | 228 | 111 | 345 | 4.75e-130 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa0970410 | 0.819103 | 1.384628e-52 | -8.615850e-47 |
| Msa0051620 | Msa0970410 | 0.828106 | 1.081007e-54 | -8.615850e-47 |
| Msa0051730 | Msa0970410 | 0.833271 | 5.867937e-56 | -8.615850e-47 |
| Msa0107410 | Msa0970410 | 0.823589 | 1.276748e-53 | -8.615850e-47 |
| Msa0611060 | Msa0970410 | 0.805245 | 1.465176e-49 | -8.615850e-47 |
| Msa0629040 | Msa0970410 | 0.800563 | 1.359200e-48 | -8.615850e-47 |
| Msa0652590 | Msa0970410 | 0.805440 | 1.333436e-49 | -8.615850e-47 |
| Msa0652600 | Msa0970410 | 0.810149 | 1.330387e-50 | -8.615850e-47 |
| Msa0654400 | Msa0970410 | -0.824110 | 9.637215e-54 | -8.615850e-47 |
| Msa0654500 | Msa0970410 | -0.828269 | 9.872602e-55 | -8.615850e-47 |
| Msa0657340 | Msa0970410 | 0.840435 | 8.710453e-58 | -8.615850e-47 |
| Msa0672090 | Msa0970410 | 0.821916 | 3.130840e-53 | -8.615850e-47 |
| Msa0701430 | Msa0970410 | 0.834141 | 3.557285e-56 | -8.615850e-47 |
| Msa0716620 | Msa0970410 | 0.827510 | 1.503196e-54 | -8.615850e-47 |
| Msa0728230 | Msa0970410 | 0.815910 | 7.255499e-52 | -8.615850e-47 |
| Msa0728570 | Msa0970410 | 0.811367 | 7.253904e-51 | -8.615850e-47 |
| Msa0742690 | Msa0970410 | -0.807854 | 4.123302e-50 | -8.615850e-47 |
| Msa0744540 | Msa0970410 | 0.832856 | 7.444258e-56 | -8.615850e-47 |
| Msa0744550 | Msa0970410 | 0.850529 | 1.600618e-60 | -8.615850e-47 |
| Msa0744560 | Msa0970410 | 0.849751 | 2.644123e-60 | -8.615850e-47 |
| Msa0744710 | Msa0970410 | 0.838130 | 3.451420e-57 | -8.615850e-47 |
| Msa0751970 | Msa0970410 | 0.801558 | 8.507451e-49 | -8.615850e-47 |
| Msa0772350 | Msa0970410 | 0.809264 | 2.062297e-50 | -8.615850e-47 |
| Msa0779830 | Msa0970410 | -0.802640 | 5.098311e-49 | -8.615850e-47 |
| Msa0794200 | Msa0970410 | 0.801298 | 9.619407e-49 | -8.615850e-47 |
| Msa0795320 | Msa0970410 | 0.835604 | 1.523108e-56 | -8.615850e-47 |
| Msa0806910 | Msa0970410 | 0.801340 | 9.430833e-49 | -8.615850e-47 |
| Msa0826240 | Msa0970410 | 0.843065 | 1.761940e-58 | -8.615850e-47 |
| Msa0826360 | Msa0970410 | 0.813607 | 2.349566e-51 | -8.615850e-47 |
| Msa0826370 | Msa0970410 | 0.839443 | 1.580012e-57 | -8.615850e-47 |
| Msa0826380 | Msa0970410 | 0.839890 | 1.208371e-57 | -8.615850e-47 |
| Msa0826450 | Msa0970410 | 0.835563 | 1.560131e-56 | -8.615850e-47 |
| Msa0837550 | Msa0970410 | 0.812737 | 3.647420e-51 | -8.615850e-47 |
| Msa0129290 | Msa0970410 | 0.809743 | 1.627414e-50 | -8.615850e-47 |
| Msa0143640 | Msa0970410 | 0.825961 | 3.522961e-54 | -8.615850e-47 |
| Msa0146090 | Msa0970410 | 0.826698 | 2.351882e-54 | -8.615850e-47 |
| Msa0150620 | Msa0970410 | 0.801594 | 8.365896e-49 | -8.615850e-47 |
| Msa0153860 | Msa0970410 | 0.807684 | 4.482521e-50 | -8.615850e-47 |
| Msa0183960 | Msa0970410 | -0.807813 | 4.208589e-50 | -8.615850e-47 |
| Msa0224210 | Msa0970410 | 0.804042 | 2.612122e-49 | -8.615850e-47 |
| Msa0378320 | Msa0970410 | 0.804105 | 2.534667e-49 | -8.615850e-47 |
| Msa0390790 | Msa0970410 | 0.805127 | 1.550742e-49 | -8.615850e-47 |
| Msa0393100 | Msa0970410 | 0.813657 | 2.290434e-51 | -8.615850e-47 |
| Msa0402800 | Msa0970410 | 0.825051 | 5.787241e-54 | -8.615850e-47 |
| Msa0427660 | Msa0970410 | 0.816664 | 4.921757e-52 | -8.615850e-47 |
| Msa0449620 | Msa0970410 | 0.818903 | 1.537291e-52 | -8.615850e-47 |
| Msa0460510 | Msa0970410 | -0.803136 | 4.025302e-49 | -8.615850e-47 |
| Msa0480530 | Msa0970410 | 0.828168 | 1.044443e-54 | -8.615850e-47 |
| Msa0480540 | Msa0970410 | 0.849837 | 2.501464e-60 | -8.615850e-47 |
| Msa0480550 | Msa0970410 | 0.852679 | 3.941306e-61 | -8.615850e-47 |
| Msa0242720 | Msa0970410 | 0.827563 | 1.460411e-54 | -8.615850e-47 |
| Msa0246140 | Msa0970410 | 0.853922 | 1.734210e-61 | -8.615850e-47 |
| Msa0267700 | Msa0970410 | 0.809036 | 2.307712e-50 | -8.615850e-47 |
| Msa0324810 | Msa0970410 | 0.807172 | 5.755546e-50 | -8.615850e-47 |
| Msa0493870 | Msa0970410 | 0.803326 | 3.676699e-49 | -8.615850e-47 |
| Msa0497860 | Msa0970410 | 0.828988 | 6.620094e-55 | -8.615850e-47 |
| Msa0506370 | Msa0970410 | 0.813363 | 2.658605e-51 | -8.615850e-47 |
| Msa0508160 | Msa0970410 | 0.807723 | 4.397973e-50 | -8.615850e-47 |
| Msa0513670 | Msa0970410 | 0.801650 | 8.147547e-49 | -8.615850e-47 |
| Msa0518490 | Msa0970410 | 0.806078 | 9.793380e-50 | -8.615850e-47 |
| Msa0526840 | Msa0970410 | -0.818627 | 1.775539e-52 | -8.615850e-47 |
| Msa0537210 | Msa0970410 | 0.833401 | 5.446731e-56 | -8.615850e-47 |
| Msa0554770 | Msa0970410 | -0.817167 | 3.795553e-52 | -8.615850e-47 |
| Msa0559440 | Msa0970410 | -0.808041 | 3.763672e-50 | -8.615850e-47 |
| Msa0559640 | Msa0970410 | -0.816429 | 5.555655e-52 | -8.615850e-47 |
| Msa0561110 | Msa0970410 | 0.827716 | 1.341709e-54 | -8.615850e-47 |
| Msa0565180 | Msa0970410 | 0.838607 | 2.600204e-57 | -8.615850e-47 |
| Msa0580840 | Msa0970410 | 0.818617 | 1.785537e-52 | -8.615850e-47 |
| Msa0862750 | Msa0970410 | -0.803629 | 3.181748e-49 | -8.615850e-47 |
| Msa0865810 | Msa0970410 | 0.844131 | 9.140382e-59 | -8.615850e-47 |
| Msa0865820 | Msa0970410 | 0.843200 | 1.621877e-58 | -8.615850e-47 |
| Msa0865830 | Msa0970410 | 0.836301 | 1.014234e-56 | -8.615850e-47 |
| Msa0874750 | Msa0970410 | 0.824139 | 9.490728e-54 | -8.615850e-47 |
| Msa0934290 | Msa0970410 | -0.801954 | 7.056405e-49 | -8.615850e-47 |
| Msa0956600 | Msa0970410 | -0.834207 | 3.425649e-56 | -8.615850e-47 |
| Msa0970410 | Msa0971780 | -0.803587 | 3.245945e-49 | -8.615850e-47 |
| Msa0970410 | Msa0976400 | 0.821935 | 3.099419e-53 | -8.615850e-47 |
| Msa0970410 | Msa1003730 | 0.801424 | 9.064851e-49 | -8.615850e-47 |
| Msa0970410 | Msa1003920 | 0.803685 | 3.097528e-49 | -8.615850e-47 |
| Msa0970410 | Msa1018210 | -0.811015 | 8.646949e-51 | -8.615850e-47 |
| Msa0970410 | Msa1030210 | 0.806316 | 8.727490e-50 | -8.615850e-47 |
| Msa0970410 | Msa1031780 | 0.803075 | 4.144198e-49 | -8.615850e-47 |
| Msa0970410 | Msa1057940 | -0.826073 | 3.312608e-54 | -8.615850e-47 |
| Msa0970410 | Msa1061840 | 0.803952 | 2.726222e-49 | -8.615850e-47 |
| Msa0970410 | Msa1069250 | 0.818941 | 1.507282e-52 | -8.615850e-47 |
| Msa0970410 | Msa1071350 | 0.816016 | 6.872142e-52 | -8.615850e-47 |
| Msa0970410 | Msa1075090 | 0.804036 | 2.619671e-49 | -8.615850e-47 |
| Msa0970410 | Msa1104020 | -0.803661 | 3.133962e-49 | -8.615850e-47 |
| Msa0970410 | Msa1110900 | 0.820326 | 7.276449e-53 | -8.615850e-47 |
| Msa0970410 | Msa1121720 | -0.802793 | 4.740008e-49 | -8.615850e-47 |
| Msa0970410 | Msa1174280 | 0.835766 | 1.386127e-56 | -8.615850e-47 |
| Msa0970410 | Msa1179340 | 0.807546 | 4.794351e-50 | -8.615850e-47 |
| Msa0970410 | Msa1202110 | 0.829924 | 3.919802e-55 | -8.615850e-47 |
| Msa0970410 | Msa1202470 | 0.807792 | 4.250565e-50 | -8.615850e-47 |
| Msa0970410 | Msa1211610 | 0.813639 | 2.311860e-51 | -8.615850e-47 |
| Msa0970410 | Msa1223560 | 0.826996 | 1.996206e-54 | -8.615850e-47 |
| Msa0970410 | Msa1254870 | 0.827991 | 1.152155e-54 | -8.615850e-47 |
| Msa0970410 | Msa1263500 | 0.829042 | 6.422646e-55 | -8.615850e-47 |
| Msa0970410 | Msa1275220 | 0.809764 | 1.610102e-50 | -8.615850e-47 |
| Msa0970410 | Msa1299480 | 0.817390 | 3.381044e-52 | -8.615850e-47 |
| Msa0970410 | Msa1313720 | 0.808534 | 2.954364e-50 | -8.615850e-47 |
| Msa0970410 | Msa1328430 | 0.828934 | 6.822746e-55 | -8.615850e-47 |
| Msa0970410 | Msa1349830 | 0.801629 | 8.227519e-49 | -8.615850e-47 |
| Msa0970410 | Msa1356100 | -0.802978 | 4.340662e-49 | -8.615850e-47 |
| Msa0970410 | Msa1375640 | 0.820597 | 6.305592e-53 | -8.615850e-47 |
| Msa0970410 | Msa1382740 | 0.801863 | 7.368052e-49 | -8.615850e-47 |
| Msa0970410 | Msa1387610 | 0.838947 | 2.124527e-57 | -8.615850e-47 |
| Msa0970410 | Msa1398120 | 0.837759 | 4.300712e-57 | -8.615850e-47 |
| Msa0970410 | Msa1401110 | 0.822439 | 2.367290e-53 | -8.615850e-47 |
| Msa0970410 | Msa1449470 | 0.830591 | 2.693590e-55 | -8.615850e-47 |
| Msa0970410 | Msa1459920 | 0.834750 | 2.502447e-56 | -8.615850e-47 |
| Msa0970410 | Msa1459930 | 0.821862 | 3.221738e-53 | -8.615850e-47 |
| Msa0970410 | Msa1461840 | -0.800582 | 1.347120e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970410 | MtrunA17_Chr6g0449451 | 80.335 | 239 | 31 | 4 | 2 | 228 | 111 | 345 | 9.14e-134 | 381 |
| Msa0970410 | MtrunA17_Chr7g0227301 | 73.059 | 219 | 45 | 2 | 2 | 206 | 74 | 292 | 8.40e-117 | 337 |
| Msa0970410 | MtrunA17_Chr6g0449431 | 76.136 | 176 | 30 | 2 | 30 | 205 | 19 | 182 | 5.82e-91 | 270 |
| Msa0970410 | MtrunA17_Chr5g0446741 | 48.246 | 228 | 107 | 4 | 2 | 219 | 127 | 353 | 7.43e-69 | 218 |
| Msa0970410 | MtrunA17_Chr3g0078811 | 53.459 | 159 | 74 | 0 | 2 | 160 | 127 | 285 | 1.78e-61 | 195 |
| Msa0970410 | MtrunA17_Chr6g0449421 | 90.000 | 50 | 3 | 1 | 30 | 79 | 51 | 98 | 1.88e-24 | 94.4 |
| Msa0970410 | MtrunA17_Chr6g0449411 | 87.805 | 41 | 5 | 0 | 78 | 118 | 23 | 63 | 1.20e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970410 | AT5G40510.1 | 54.054 | 222 | 97 | 2 | 2 | 222 | 79 | 296 | 1.22e-85 | 258 |
| Msa0970410 | AT5G40510.2 | 54.054 | 222 | 97 | 2 | 2 | 222 | 115 | 332 | 4.15e-85 | 258 |
| Msa0970410 | AT3G27570.2 | 56.109 | 221 | 87 | 3 | 2 | 215 | 81 | 298 | 2.86e-82 | 249 |
| Msa0970410 | AT3G27570.1 | 56.109 | 221 | 87 | 3 | 2 | 215 | 120 | 337 | 1.11e-81 | 249 |
| Msa0970410 | AT4G26620.1 | 45.794 | 214 | 115 | 1 | 2 | 214 | 127 | 340 | 3.79e-65 | 209 |
| Msa0970410 | AT5G55900.2 | 46.078 | 204 | 102 | 2 | 2 | 199 | 11 | 212 | 5.94e-62 | 196 |
| Msa0970410 | AT5G55900.1 | 46.078 | 204 | 102 | 2 | 2 | 199 | 115 | 316 | 8.16e-61 | 197 |
Find 55 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTGTATTTGATCATTTC+TGG | 0.115811 | 6_4:+1919738 | None:intergenic |
| CCCTGCTTACATTGCTCTCT+TGG | 0.244241 | 6_4:+1918047 | None:intergenic |
| AATGAAGAAATTCAGCTTAG+AGG | 0.270475 | 6_4:-1918903 | Msa0970410:CDS |
| GAAAGATCAGATTTCTGTTA+TGG | 0.295318 | 6_4:-1918877 | Msa0970410:CDS |
| GTTATGGCTTGTTCTCATAT+TGG | 0.310524 | 6_4:-1918861 | Msa0970410:CDS |
| TCTTTCCATTACCAAGCTTC+TGG | 0.316686 | 6_4:+1918191 | None:intergenic |
| TCTCCCTTAACTTCAGCAAT+AGG | 0.342537 | 6_4:+1918220 | None:intergenic |
| GGTTGTTGCCAAGGTGTTGA+TGG | 0.346032 | 6_4:-1918133 | Msa0970410:CDS |
| GCCACCTATTGCTGAAGTTA+AGG | 0.375556 | 6_4:-1918224 | Msa0970410:CDS |
| ACCTGTATTTGATCATTTCT+GGG | 0.389616 | 6_4:+1919739 | None:intergenic |
| GAATTGTTTCAGAGGTCAAA+TGG | 0.395969 | 6_4:-1918248 | Msa0970410:intron |
| AGTAAGGCAGGCACATCATT+AGG | 0.407951 | 6_4:+1918467 | None:intergenic |
| GTTGTTGCCAAGGTGTTGAT+GGG | 0.422367 | 6_4:-1918132 | Msa0970410:CDS |
| TTGATTGAAAAGGGGTTTGA+AGG | 0.422542 | 6_4:-1919087 | Msa0970410:intron |
| AGTAACAATGAAAACGTTGT+TGG | 0.435959 | 6_4:-1918154 | Msa0970410:CDS |
| GGCAATGTGTTGGTCTAGTA+AGG | 0.444132 | 6_4:+1918451 | None:intergenic |
| TCCCAGAAATGATCAAATAC+AGG | 0.447003 | 6_4:-1919740 | Msa0970410:intron |
| CCACCTATTGCTGAAGTTAA+GGG | 0.453799 | 6_4:-1918223 | Msa0970410:CDS |
| AATTGTTTCAGAGGTCAAAT+GGG | 0.469390 | 6_4:-1918247 | Msa0970410:intron |
| AATGACCAGAAGCTTGGTAA+TGG | 0.477763 | 6_4:-1918196 | Msa0970410:CDS |
| ACCAAGAGAGCAATGTAAGC+AGG | 0.482598 | 6_4:-1918048 | Msa0970410:CDS |
| ATGTGAGGTGTGGTGTTTGT+GGG | 0.485855 | 6_4:-1918947 | Msa0970410:CDS |
| TAGTTTCTTCAATGATGTAA+TGG | 0.500573 | 6_4:-1919051 | Msa0970410:CDS |
| AACGTTGTTGGTTGTTGCCA+AGG | 0.511391 | 6_4:-1918142 | Msa0970410:CDS |
| AATTTAATCACATTTAGTCC+TGG | 0.524943 | 6_4:-1918819 | Msa0970410:CDS |
| GGAGAAAATGACCAGAAGCT+TGG | 0.526588 | 6_4:-1918202 | Msa0970410:CDS |
| ATGGCTTGTTCTCATATTGG+TGG | 0.527123 | 6_4:-1918858 | Msa0970410:CDS |
| ATGTGTTGGTCTAGTAAGGC+AGG | 0.531040 | 6_4:+1918455 | None:intergenic |
| TTGAGCTTGTCAATGAGAGC+AGG | 0.534670 | 6_4:+1918924 | None:intergenic |
| ATTGGTGGTCATAAGTATGC+TGG | 0.540034 | 6_4:-1918843 | Msa0970410:CDS |
| GATGTGAGGTGTGGTGTTTG+TGG | 0.540888 | 6_4:-1918948 | Msa0970410:CDS |
| CCAAGAGAGCAATGTAAGCA+GGG | 0.556937 | 6_4:-1918047 | Msa0970410:CDS |
| CCTCTCCCTTGGCAATGTGT+TGG | 0.560206 | 6_4:+1918441 | None:intergenic |
| ACATTTAGTCCTGGACCAGA+TGG | 0.561723 | 6_4:-1918810 | Msa0970410:CDS |
| GAAAATTAAGACGTCGCCGT+CGG | 0.574111 | 6_4:+1919761 | None:intergenic |
| GAAGAGGACGGCTTCTCCGA+CGG | 0.576918 | 6_4:-1919777 | Msa0970410:CDS |
| CCCTTAACTTCAGCAATAGG+TGG | 0.579323 | 6_4:+1918223 | None:intergenic |
| TCTTGCACTCCACCATCCCA+TGG | 0.587486 | 6_4:+1919017 | None:intergenic |
| TGTGAGACGATTGAAGAGGA+CGG | 0.605377 | 6_4:-1919789 | Msa0970410:CDS |
| AAGAAACCCCATCAACACCT+TGG | 0.609631 | 6_4:+1918125 | None:intergenic |
| CTCATGGAAGTCGCGATGTG+AGG | 0.623197 | 6_4:-1918962 | Msa0970410:CDS |
| AGTTTGTGAGACGATTGAAG+AGG | 0.628975 | 6_4:-1919793 | Msa0970410:CDS |
| GGAGTGCAAGATGTGATAGC+AGG | 0.631484 | 6_4:-1919005 | Msa0970410:CDS |
| CCAACACATTGCCAAGGGAG+AGG | 0.633790 | 6_4:-1918441 | Msa0970410:CDS |
| ACTAGACCAACACATTGCCA+AGG | 0.634640 | 6_4:-1918447 | Msa0970410:CDS |
| AGTTGTAAACCATGGGATGG+TGG | 0.642180 | 6_4:-1919026 | Msa0970410:CDS |
| CAAGAGAGCAATGTAAGCAG+GGG | 0.643709 | 6_4:-1918046 | Msa0970410:CDS |
| TTGTTGCCAAGGTGTTGATG+GGG | 0.644778 | 6_4:-1918131 | Msa0970410:CDS |
| AATGGTGAGTTGTAAACCAT+GGG | 0.656762 | 6_4:-1919033 | Msa0970410:CDS |
| CTAGACCAACACATTGCCAA+GGG | 0.659473 | 6_4:-1918446 | Msa0970410:CDS |
| AAGAGAGCAATGTAAGCAGG+GGG | 0.676699 | 6_4:-1918045 | Msa0970410:CDS |
| TAATGGTGAGTTGTAAACCA+TGG | 0.677466 | 6_4:-1919034 | Msa0970410:CDS |
| ATTGTTTCAGAGGTCAAATG+GGG | 0.679466 | 6_4:-1918246 | Msa0970410:intron |
| GGAAGTCGCGATGTGAGGTG+TGG | 0.682334 | 6_4:-1918957 | Msa0970410:CDS |
| GTGAGTTGTAAACCATGGGA+TGG | 0.686051 | 6_4:-1919029 | Msa0970410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAATTAATAACTTGT+TGG | + | chr6_4:1918127-1918146 | None:intergenic | 10.0% |
| !! | TTAACAACATTATTTATTTA+TGG | + | chr6_4:1918186-1918205 | None:intergenic | 10.0% |
| !! | ATTCAATATAATATATAAGA+TGG | + | chr6_4:1920369-1920388 | None:intergenic | 10.0% |
| !! | ATCTTATATATTATATTGAA+TGG | - | chr6_4:1920368-1920387 | Msa0970410:intron | 10.0% |
| !!! | ATAACTAAATTGATATTTTG+AGG | - | chr6_4:1918705-1918724 | Msa0970410:intron | 15.0% |
| !! | AAACATTTCTTACTTAATAA+TGG | + | chr6_4:1918989-1919008 | None:intergenic | 15.0% |
| !! | AATAATCAATTCTCTTATTA+TGG | - | chr6_4:1919220-1919239 | Msa0970410:intron | 15.0% |
| !!! | TTAATGTTTTATATTGTGAA+TGG | - | chr6_4:1919542-1919561 | Msa0970410:intron | 15.0% |
| !! | AGTAAAAAATTTGGAAAAAA+AGG | - | chr6_4:1920005-1920024 | Msa0970410:intron | 15.0% |
| !!! | TTAAAAGATTTTATTGTTGT+TGG | - | chr6_4:1920134-1920153 | Msa0970410:intron | 15.0% |
| !!! | ACTTAAGTCTTTAAAAATGT+TGG | + | chr6_4:1918580-1918599 | None:intergenic | 20.0% |
| !! | AAATTGGATACAAATTAACA+TGG | + | chr6_4:1918795-1918814 | None:intergenic | 20.0% |
| !!! | ATTTGAGTTAACATCAAAAT+TGG | + | chr6_4:1918811-1918830 | None:intergenic | 20.0% |
| !!! | TGTTAACTCAAATTTCATTT+TGG | - | chr6_4:1918818-1918837 | Msa0970410:CDS | 20.0% |
| !!! | ACACCATTCTTTTTTTTTTT+AGG | - | chr6_4:1919014-1919033 | Msa0970410:CDS | 20.0% |
| !!! | CACCATTCTTTTTTTTTTTA+GGG | - | chr6_4:1919015-1919034 | Msa0970410:CDS | 20.0% |
| !! | ATCCCTAAAAAAAAAAAGAA+TGG | + | chr6_4:1919020-1919039 | None:intergenic | 20.0% |
| !!! | TTTGAAAGTAATGTTTGTTA+AGG | - | chr6_4:1919333-1919352 | Msa0970410:intron | 20.0% |
| !!! | GACATTAGAATTTGTTTATT+TGG | - | chr6_4:1920343-1920362 | Msa0970410:intron | 20.0% |
| !!! | ATTTTTTATCCAAAAGCATG+TGG | - | chr6_4:1918731-1918750 | Msa0970410:intron | 25.0% |
| ! | AGAAAGAATTAGTATACAAG+TGG | + | chr6_4:1919094-1919113 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTTGATTGAAAA+GGG | - | chr6_4:1919579-1919598 | Msa0970410:intron | 25.0% |
| ! | TAGTTTCTTCAATGATGTAA+TGG | - | chr6_4:1919624-1919643 | Msa0970410:intron | 25.0% |
| ! | AATTTAATCACATTTAGTCC+TGG | - | chr6_4:1919856-1919875 | Msa0970410:intron | 25.0% |
| ! | CATTGTTCAAAACAAATAAG+AGG | + | chr6_4:1919936-1919955 | None:intergenic | 25.0% |
| ! | GTTGATGCTAGTAAAAAATT+TGG | - | chr6_4:1919996-1920015 | Msa0970410:intron | 25.0% |
| ! | CATACCTGTAATTCAATATT+AGG | + | chr6_4:1920177-1920196 | None:intergenic | 25.0% |
| ! | CTAATATTGAATTACAGGTA+TGG | - | chr6_4:1920175-1920194 | Msa0970410:intron | 25.0% |
| ! | CAACTAATAAAATATCCATG+TGG | + | chr6_4:1920307-1920326 | None:intergenic | 25.0% |
| ! | AATTGTATGAATTGTTTCAG+AGG | - | chr6_4:1920419-1920438 | Msa0970410:intron | 25.0% |
| ! | GTTTTTGAACTTGAAATGAG+AGG | + | chr6_4:1918227-1918246 | None:intergenic | 30.0% |
| TTTGCTTGTACATCTCATAA+CGG | + | chr6_4:1918327-1918346 | None:intergenic | 30.0% | |
| CAAAAATGACATTGTCATCA+AGG | - | chr6_4:1918483-1918502 | Msa0970410:CDS | 30.0% | |
| ! | CTCTACAAATTTTGTAGAGT+CGG | + | chr6_4:1918552-1918571 | None:intergenic | 30.0% |
| CTCTACAAAATTTGTAGAGT+CGG | - | chr6_4:1918553-1918572 | Msa0970410:intron | 30.0% | |
| TGGATTTACGATTGTTAGTT+TGG | - | chr6_4:1918838-1918857 | Msa0970410:CDS | 30.0% | |
| ACCTGTATTTGATCATTTCT+GGG | + | chr6_4:1918939-1918958 | None:intergenic | 30.0% | |
| TACCTGTATTTGATCATTTC+TGG | + | chr6_4:1918940-1918959 | None:intergenic | 30.0% | |
| GAAATCGTAAAAAATGTGCT+AGG | + | chr6_4:1919072-1919091 | None:intergenic | 30.0% | |
| TAATTCTTTCTTTCTCTCCT+TGG | - | chr6_4:1919103-1919122 | Msa0970410:intron | 30.0% | |
| ! | TTTCGTGTTTTCATATTCCA+AGG | + | chr6_4:1919123-1919142 | None:intergenic | 30.0% |
| !! | GTGTTGTTGTTTGATTGAAA+AGG | - | chr6_4:1919578-1919597 | Msa0970410:intron | 30.0% |
| !! | GTTGTTGTTTGATTGAAAAG+GGG | - | chr6_4:1919580-1919599 | Msa0970410:intron | 30.0% |
| !! | TATATTTTTGTGTGTGCTCA+TGG | - | chr6_4:1919697-1919716 | Msa0970410:intron | 30.0% |
| AATGAAGAAATTCAGCTTAG+AGG | - | chr6_4:1919772-1919791 | Msa0970410:CDS | 30.0% | |
| GAAAGATCAGATTTCTGTTA+TGG | - | chr6_4:1919798-1919817 | Msa0970410:CDS | 30.0% | |
| ! | TTACATGTGTCGATATTATG+TGG | - | chr6_4:1920043-1920062 | Msa0970410:intron | 30.0% |
| AATTGTTTCAGAGGTCAAAT+GGG | - | chr6_4:1920428-1920447 | Msa0970410:intron | 30.0% | |
| AGTAACAATGAAAACGTTGT+TGG | - | chr6_4:1920521-1920540 | Msa0970410:intron | 30.0% | |
| !!! | AAGTTTTGAGCAAAACAAAG+TGG | - | chr6_4:1920586-1920605 | Msa0970410:intron | 30.0% |
| TTGCTTGTACATCTCATAAC+GGG | + | chr6_4:1918326-1918345 | None:intergenic | 35.0% | |
| ! | AAAGTGGTTGCAACACTTTT+AGG | + | chr6_4:1918454-1918473 | None:intergenic | 35.0% |
| !!! | ATTTTTGCGAGCTTTGAAAG+TGG | + | chr6_4:1918470-1918489 | None:intergenic | 35.0% |
| CAAGATGTGAACTTGCATTA+GGG | - | chr6_4:1918610-1918629 | Msa0970410:intron | 35.0% | |
| ! | AAACCCTAACATGTGTTGAT+TGG | - | chr6_4:1918757-1918776 | Msa0970410:intron | 35.0% |
| TCCCAGAAATGATCAAATAC+AGG | - | chr6_4:1918935-1918954 | Msa0970410:CDS | 35.0% | |
| ATTATGGTTCTCTCTCTAAC+TGG | - | chr6_4:1919236-1919255 | Msa0970410:intron | 35.0% | |
| TTGATTGAAAAGGGGTTTGA+AGG | - | chr6_4:1919588-1919607 | Msa0970410:intron | 35.0% | |
| TAATGGTGAGTTGTAAACCA+TGG | - | chr6_4:1919641-1919660 | Msa0970410:intron | 35.0% | |
| AATGGTGAGTTGTAAACCAT+GGG | - | chr6_4:1919642-1919661 | Msa0970410:intron | 35.0% | |
| !! | GTTATGGCTTGTTCTCATAT+TGG | - | chr6_4:1919814-1919833 | Msa0970410:intron | 35.0% |
| ATGGAAAAATCATGGGTCAT+TGG | - | chr6_4:1919884-1919903 | Msa0970410:intron | 35.0% | |
| GTCTGATGTTCGATATGTAT+CGG | + | chr6_4:1920078-1920097 | None:intergenic | 35.0% | |
| CGTGCCTAATATTGAATTAC+AGG | - | chr6_4:1920170-1920189 | Msa0970410:intron | 35.0% | |
| GAGAGGTCATACAAAAACTA+TGG | - | chr6_4:1920251-1920270 | Msa0970410:intron | 35.0% | |
| AGGTCATACAAAAACTATGG+AGG | - | chr6_4:1920254-1920273 | Msa0970410:intron | 35.0% | |
| ! | AGTCAAAAGCACACATTAAG+TGG | + | chr6_4:1920283-1920302 | None:intergenic | 35.0% |
| GAATTGTTTCAGAGGTCAAA+TGG | - | chr6_4:1920427-1920446 | Msa0970410:intron | 35.0% | |
| ATTGTTTCAGAGGTCAAATG+GGG | - | chr6_4:1920429-1920448 | Msa0970410:intron | 35.0% | |
| TTTGGAAGAAGACATGGTTG+CGG | + | chr6_4:1918275-1918294 | None:intergenic | 40.0% | |
| ! | ATAACGGGAGAAACCGTATT+TGG | + | chr6_4:1918311-1918330 | None:intergenic | 40.0% |
| ATGTACAAGCAAAACCTTGC+TGG | - | chr6_4:1918334-1918353 | Msa0970410:intron | 40.0% | |
| ATGACGATCGTAGGATTCAA+CGG | + | chr6_4:1918362-1918381 | None:intergenic | 40.0% | |
| TAGAAAGACATGACGATCGT+AGG | + | chr6_4:1918371-1918390 | None:intergenic | 40.0% | |
| GTTACAAGAACCACCAAACT+TGG | - | chr6_4:1918392-1918411 | Msa0970410:intron | 40.0% | |
| !! | GTTGCAACACTTTTAGGAAG+GGG | + | chr6_4:1918448-1918467 | None:intergenic | 40.0% |
| !! | GGTTGCAACACTTTTAGGAA+GGG | + | chr6_4:1918449-1918468 | None:intergenic | 40.0% |
| !! | TGGTTGCAACACTTTTAGGA+AGG | + | chr6_4:1918450-1918469 | None:intergenic | 40.0% |
| TTGTAGAGTCGGTGCAAATT+AGG | + | chr6_4:1918541-1918560 | None:intergenic | 40.0% | |
| CCTAATGCAAGTTCACATCT+TGG | + | chr6_4:1918612-1918631 | None:intergenic | 40.0% | |
| CCAAGATGTGAACTTGCATT+AGG | - | chr6_4:1918609-1918628 | Msa0970410:intron | 40.0% | |
| AGGCCAATCAACACATGTTA+GGG | + | chr6_4:1918763-1918782 | None:intergenic | 40.0% | |
| AAGGCCAATCAACACATGTT+AGG | + | chr6_4:1918764-1918783 | None:intergenic | 40.0% | |
| !! | ACATGTGTTGATTGGCCTTT+AGG | - | chr6_4:1918765-1918784 | Msa0970410:intron | 40.0% |
| AATTAACATGGCCGACCTAA+AGG | + | chr6_4:1918783-1918802 | None:intergenic | 40.0% | |
| AGTTTGTGAGACGATTGAAG+AGG | - | chr6_4:1918882-1918901 | Msa0970410:CDS | 40.0% | |
| !! | ATGGCTTGTTCTCATATTGG+TGG | - | chr6_4:1919817-1919836 | Msa0970410:intron | 40.0% |
| ! | ATTGGTGGTCATAAGTATGC+TGG | - | chr6_4:1919832-1919851 | Msa0970410:intron | 40.0% |
| ! | ATGATTTTTCCATCTGGTCC+AGG | + | chr6_4:1919877-1919896 | None:intergenic | 40.0% |
| TGGACCAGATGGAAAAATCA+TGG | - | chr6_4:1919876-1919895 | Msa0970410:intron | 40.0% | |
| GGACCAGATGGAAAAATCAT+GGG | - | chr6_4:1919877-1919896 | Msa0970410:intron | 40.0% | |
| ! | TGACCCATGATTTTTCCATC+TGG | + | chr6_4:1919883-1919902 | None:intergenic | 40.0% |
| CAATGAAACACTCACGAACA+CGG | - | chr6_4:1919951-1919970 | Msa0970410:intron | 40.0% | |
| ! | ACGTCTTTCATCAGAAGTGT+TGG | - | chr6_4:1920098-1920117 | Msa0970410:intron | 40.0% |
| ! | TTTTTGTATGACCTCTCCCT+TGG | + | chr6_4:1920248-1920267 | None:intergenic | 40.0% |
| CCACCTATTGCTGAAGTTAA+GGG | - | chr6_4:1920452-1920471 | Msa0970410:intron | 40.0% | |
| TCTCCCTTAACTTCAGCAAT+AGG | + | chr6_4:1920458-1920477 | None:intergenic | 40.0% | |
| AATGACCAGAAGCTTGGTAA+TGG | - | chr6_4:1920479-1920498 | Msa0970410:intron | 40.0% | |
| TCTTTCCATTACCAAGCTTC+TGG | + | chr6_4:1920487-1920506 | None:intergenic | 40.0% | |
| ! | GACGACTTTGGAAGAAGACA+TGG | + | chr6_4:1918281-1918300 | None:intergenic | 45.0% |
| TTTAGGAAGGGGATGGTCAT+CGG | + | chr6_4:1918437-1918456 | None:intergenic | 45.0% | |
| !! | CAACACTTTTAGGAAGGGGA+TGG | + | chr6_4:1918444-1918463 | None:intergenic | 45.0% |
| TAGAGTCGGTGCAAATTAGG+AGG | + | chr6_4:1918538-1918557 | None:intergenic | 45.0% | |
| GATGTGAACTTGCATTAGGG+AGG | - | chr6_4:1918613-1918632 | Msa0970410:intron | 45.0% | |
| CTTGCATTAGGGAGGATTTG+AGG | - | chr6_4:1918621-1918640 | Msa0970410:intron | 45.0% | |
| ! | GGGTTTAAGCCACATGCTTT+TGG | + | chr6_4:1918743-1918762 | None:intergenic | 45.0% |
| !! | GTGTTGATTGGCCTTTAGGT+CGG | - | chr6_4:1918769-1918788 | Msa0970410:intron | 45.0% |
| TGTGAGACGATTGAAGAGGA+CGG | - | chr6_4:1918886-1918905 | Msa0970410:CDS | 45.0% | |
| GAAAATTAAGACGTCGCCGT+CGG | + | chr6_4:1918917-1918936 | None:intergenic | 45.0% | |
| GTGAGTTGTAAACCATGGGA+TGG | - | chr6_4:1919646-1919665 | Msa0970410:intron | 45.0% | |
| AGTTGTAAACCATGGGATGG+TGG | - | chr6_4:1919649-1919668 | Msa0970410:intron | 45.0% | |
| ATGTGAGGTGTGGTGTTTGT+GGG | - | chr6_4:1919728-1919747 | Msa0970410:intron | 45.0% | |
| TTGAGCTTGTCAATGAGAGC+AGG | + | chr6_4:1919754-1919773 | None:intergenic | 45.0% | |
| ACATTTAGTCCTGGACCAGA+TGG | - | chr6_4:1919865-1919884 | Msa0970410:intron | 45.0% | |
| AGTAAGGCAGGCACATCATT+AGG | + | chr6_4:1920211-1920230 | None:intergenic | 45.0% | |
| ! | ATGTGTTGGTCTAGTAAGGC+AGG | + | chr6_4:1920223-1920242 | None:intergenic | 45.0% |
| ! | GGCAATGTGTTGGTCTAGTA+AGG | + | chr6_4:1920227-1920246 | None:intergenic | 45.0% |
| ACTAGACCAACACATTGCCA+AGG | - | chr6_4:1920228-1920247 | Msa0970410:intron | 45.0% | |
| CTAGACCAACACATTGCCAA+GGG | - | chr6_4:1920229-1920248 | Msa0970410:intron | 45.0% | |
| !!! | GTGTGCTTTTGACTTCCACA+TGG | - | chr6_4:1920289-1920308 | Msa0970410:intron | 45.0% |
| GCCACCTATTGCTGAAGTTA+AGG | - | chr6_4:1920451-1920470 | Msa0970410:intron | 45.0% | |
| CCCTTAACTTCAGCAATAGG+TGG | + | chr6_4:1920455-1920474 | None:intergenic | 45.0% | |
| GGAGAAAATGACCAGAAGCT+TGG | - | chr6_4:1920473-1920492 | Msa0970410:intron | 45.0% | |
| ! | AACGTTGTTGGTTGTTGCCA+AGG | - | chr6_4:1920533-1920552 | Msa0970410:intron | 45.0% |
| !! | GTTGTTGCCAAGGTGTTGAT+GGG | - | chr6_4:1920543-1920562 | Msa0970410:intron | 45.0% |
| !! | TTGTTGCCAAGGTGTTGATG+GGG | - | chr6_4:1920544-1920563 | Msa0970410:intron | 45.0% |
| AAGAAACCCCATCAACACCT+TGG | + | chr6_4:1920553-1920572 | None:intergenic | 45.0% | |
| ACCAAGAGAGCAATGTAAGC+AGG | - | chr6_4:1920627-1920646 | Msa0970410:intron | 45.0% | |
| CCAAGAGAGCAATGTAAGCA+GGG | - | chr6_4:1920628-1920647 | Msa0970410:intron | 45.0% | |
| CAAGAGAGCAATGTAAGCAG+GGG | - | chr6_4:1920629-1920648 | Msa0970410:intron | 45.0% | |
| AAGAGAGCAATGTAAGCAGG+GGG | - | chr6_4:1920630-1920649 | Msa0970410:intron | 45.0% | |
| ATGTAAGCAGGGGGAAAAAG+TGG | - | chr6_4:1920639-1920658 | Msa0970410:intron | 45.0% | |
| !! | AAAAAAACATTATTTATTTA+TGG | + | chr6_4:1918154-1918173 | None:intergenic | 5.0% |
| !!! | AAATAAATAATGTTTTTTTT+AGG | - | chr6_4:1918155-1918174 | Msa0970410:CDS | 5.0% |
| TGACTGTGAGCTCGAGTATG+AGG | - | chr6_4:1918073-1918092 | Msa0970410:CDS | 50.0% | |
| GACTGTGAGCTCGAGTATGA+GGG | - | chr6_4:1918074-1918093 | Msa0970410:CDS | 50.0% | |
| AAGACATGGTTGCGGAGGAA+TGG | + | chr6_4:1918267-1918286 | None:intergenic | 50.0% | |
| !! | TTTGGCGGTGTTGACGACTT+TGG | + | chr6_4:1918293-1918312 | None:intergenic | 50.0% |
| GTCGTCAACACCGCCAAATA+CGG | - | chr6_4:1918295-1918314 | Msa0970410:intron | 50.0% | |
| ACGGGAGAAACCGTATTTGG+CGG | + | chr6_4:1918308-1918327 | None:intergenic | 50.0% | |
| AGGATTCAACGGTTCCAGCA+AGG | + | chr6_4:1918351-1918370 | None:intergenic | 50.0% | |
| GGAGTGCAAGATGTGATAGC+AGG | - | chr6_4:1919670-1919689 | Msa0970410:intron | 50.0% | |
| GATGTGAGGTGTGGTGTTTG+TGG | - | chr6_4:1919727-1919746 | Msa0970410:intron | 50.0% | |
| !! | CAGAAGTGTTGGTGTTGCAG+AGG | - | chr6_4:1920109-1920128 | Msa0970410:intron | 50.0% |
| !! | GGTTGTTGCCAAGGTGTTGA+TGG | - | chr6_4:1920542-1920561 | Msa0970410:intron | 50.0% |
| CCCTGCTTACATTGCTCTCT+TGG | + | chr6_4:1920631-1920650 | None:intergenic | 50.0% | |
| GGAAGAAGACATGGTTGCGG+AGG | + | chr6_4:1918272-1918291 | None:intergenic | 55.0% | |
| TCATCGGAGGCTTCAACACG+CGG | + | chr6_4:1918421-1918440 | None:intergenic | 55.0% | |
| TCTTGCACTCCACCATCCCA+TGG | + | chr6_4:1919661-1919680 | None:intergenic | 55.0% | |
| CTCATGGAAGTCGCGATGTG+AGG | - | chr6_4:1919713-1919732 | Msa0970410:intron | 55.0% | |
| CCTCTCCCTTGGCAATGTGT+TGG | + | chr6_4:1920237-1920256 | None:intergenic | 55.0% | |
| CCAACACATTGCCAAGGGAG+AGG | - | chr6_4:1920234-1920253 | Msa0970410:intron | 55.0% | |
| CAACACGCGGAGGCCAAGTT+TGG | + | chr6_4:1918408-1918427 | None:intergenic | 60.0% | |
| AGGAAGGGGATGGTCATCGG+AGG | + | chr6_4:1918434-1918453 | None:intergenic | 60.0% | |
| GAAGAGGACGGCTTCTCCGA+CGG | - | chr6_4:1918898-1918917 | Msa0970410:CDS | 60.0% | |
| GGAAGTCGCGATGTGAGGTG+TGG | - | chr6_4:1919718-1919737 | Msa0970410:intron | 60.0% | |
| CACGCGGAGGCCAAGTTTGG+TGG | + | chr6_4:1918405-1918424 | None:intergenic | 65.0% | |
| TCGGAGGCTTCAACACGCGG+AGG | + | chr6_4:1918418-1918437 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1918015 | 1920682 | 1918015 | ID=Msa0970410;Name=Msa0970410 |
| chr6_4 | mRNA | 1918015 | 1920682 | 1918015 | ID=Msa0970410-mRNA-1;Parent=Msa0970410;Name=Msa0970410-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.2|0.8|1|1|5|0|240 |
| chr6_4 | exon | 1920680 | 1920682 | 1920680 | ID=Msa0970410-mRNA-1:exon:952;Parent=Msa0970410-mRNA-1 |
| chr6_4 | exon | 1919741 | 1919826 | 1919741 | ID=Msa0970410-mRNA-1:exon:951;Parent=Msa0970410-mRNA-1 |
| chr6_4 | exon | 1918792 | 1919097 | 1918792 | ID=Msa0970410-mRNA-1:exon:950;Parent=Msa0970410-mRNA-1 |
| chr6_4 | exon | 1918422 | 1918505 | 1918422 | ID=Msa0970410-mRNA-1:exon:949;Parent=Msa0970410-mRNA-1 |
| chr6_4 | exon | 1918015 | 1918258 | 1918015 | ID=Msa0970410-mRNA-1:exon:948;Parent=Msa0970410-mRNA-1 |
| chr6_4 | CDS | 1920680 | 1920682 | 1920680 | ID=Msa0970410-mRNA-1:cds;Parent=Msa0970410-mRNA-1 |
| chr6_4 | CDS | 1919741 | 1919826 | 1919741 | ID=Msa0970410-mRNA-1:cds;Parent=Msa0970410-mRNA-1 |
| chr6_4 | CDS | 1918792 | 1919097 | 1918792 | ID=Msa0970410-mRNA-1:cds;Parent=Msa0970410-mRNA-1 |
| chr6_4 | CDS | 1918422 | 1918505 | 1918422 | ID=Msa0970410-mRNA-1:cds;Parent=Msa0970410-mRNA-1 |
| chr6_4 | CDS | 1918015 | 1918258 | 1918015 | ID=Msa0970410-mRNA-1:cds;Parent=Msa0970410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
