Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099480 | XP_013465878.1 | 88.076 | 369 | 40 | 3 | 1 | 367 | 1 | 367 | 2.87e-167 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099480 | sp|Q9LVK2|BIG1A_ARATH | 40.530 | 264 | 84 | 7 | 136 | 368 | 124 | 345 | 2.29e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099480 | A0A072VD40 | 88.076 | 369 | 40 | 3 | 1 | 367 | 1 | 367 | 1.37e-167 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0099480 | 0.821719 | 3.476633e-53 | -8.615850e-47 |
| Msa0025090 | Msa0099480 | 0.808258 | 3.383539e-50 | -8.615850e-47 |
| Msa0072590 | Msa0099480 | 0.810594 | 1.066405e-50 | -8.615850e-47 |
| Msa0081700 | Msa0099480 | 0.822729 | 2.026826e-53 | -8.615850e-47 |
| Msa0091300 | Msa0099480 | 0.817035 | 4.063455e-52 | -8.615850e-47 |
| Msa0099090 | Msa0099480 | 0.805045 | 1.613020e-49 | -8.615850e-47 |
| Msa0099350 | Msa0099480 | 0.806716 | 7.185924e-50 | -8.615850e-47 |
| Msa0099430 | Msa0099480 | 0.806109 | 9.649912e-50 | -8.615850e-47 |
| Msa0099480 | Msa0127910 | 0.813312 | 2.728398e-51 | -8.615850e-47 |
| Msa0099480 | Msa0148190 | 0.839775 | 1.294735e-57 | -8.615850e-47 |
| Msa0099480 | Msa0172110 | 0.805352 | 1.391690e-49 | -8.615850e-47 |
| Msa0099480 | Msa0174060 | 0.811305 | 7.483277e-51 | -8.615850e-47 |
| Msa0099480 | Msa0214800 | -0.816787 | 4.617818e-52 | -8.615850e-47 |
| Msa0099480 | Msa0223500 | 0.808804 | 2.587144e-50 | -8.615850e-47 |
| Msa0099480 | Msa0258280 | 0.812402 | 4.316782e-51 | -8.615850e-47 |
| Msa0099480 | Msa0264580 | 0.816622 | 5.030593e-52 | -8.615850e-47 |
| Msa0099480 | Msa0294200 | -0.814813 | 1.272871e-51 | -8.615850e-47 |
| Msa0099480 | Msa0295030 | 0.812596 | 3.915178e-51 | -8.615850e-47 |
| Msa0099480 | Msa0339970 | 0.815415 | 9.356325e-52 | -8.615850e-47 |
| Msa0099480 | Msa0362440 | 0.811837 | 5.732583e-51 | -8.615850e-47 |
| Msa0099480 | Msa0390590 | 0.817555 | 3.103191e-52 | -8.615850e-47 |
| Msa0099480 | Msa0432260 | 0.823906 | 1.076048e-53 | -8.615850e-47 |
| Msa0099480 | Msa0474120 | 0.801246 | 9.858936e-49 | -8.615850e-47 |
| Msa0099480 | Msa0483160 | 0.820972 | 5.169418e-53 | -8.615850e-47 |
| Msa0099480 | Msa0502900 | 0.811317 | 7.436052e-51 | -8.615850e-47 |
| Msa0099480 | Msa0526490 | 0.818409 | 1.989666e-52 | -8.615850e-47 |
| Msa0099480 | Msa0549550 | 0.815907 | 7.266295e-52 | -8.615850e-47 |
| Msa0099480 | Msa0559440 | 0.813605 | 2.351653e-51 | -8.615850e-47 |
| Msa0099480 | Msa0559640 | 0.806891 | 6.598931e-50 | -8.615850e-47 |
| Msa0099480 | Msa0563230 | 0.825566 | 4.372294e-54 | -8.615850e-47 |
| Msa0099480 | Msa0578890 | 0.819170 | 1.336478e-52 | -8.615850e-47 |
| Msa0099480 | Msa0604890 | 0.822484 | 2.310784e-53 | -8.615850e-47 |
| Msa0099480 | Msa0610850 | 0.821077 | 4.891753e-53 | -8.615850e-47 |
| Msa0099480 | Msa0617470 | 0.843624 | 1.249744e-58 | -8.615850e-47 |
| Msa0099480 | Msa0625550 | 0.801144 | 1.034449e-48 | -8.615850e-47 |
| Msa0099480 | Msa0646180 | 0.832886 | 7.316337e-56 | -8.615850e-47 |
| Msa0099480 | Msa0651340 | 0.822151 | 2.761087e-53 | -8.615850e-47 |
| Msa0099480 | Msa0654400 | 0.801015 | 1.099161e-48 | -8.615850e-47 |
| Msa0099480 | Msa0693560 | 0.816959 | 4.225466e-52 | -8.615850e-47 |
| Msa0099480 | Msa0700250 | 0.839982 | 1.144127e-57 | -8.615850e-47 |
| Msa0099480 | Msa0708840 | 0.809428 | 1.901715e-50 | -8.615850e-47 |
| Msa0099480 | Msa0722660 | 0.823754 | 1.168550e-53 | -8.615850e-47 |
| Msa0099480 | Msa0801320 | 0.812615 | 3.877827e-51 | -8.615850e-47 |
| Msa0099480 | Msa0869320 | 0.804457 | 2.140443e-49 | -8.615850e-47 |
| Msa0099480 | Msa0870220 | 0.815394 | 9.456550e-52 | -8.615850e-47 |
| Msa0099480 | Msa0903460 | 0.815377 | 9.535646e-52 | -8.615850e-47 |
| Msa0099480 | Msa0934290 | 0.815059 | 1.122163e-51 | -8.615850e-47 |
| Msa0099480 | Msa0935930 | 0.820097 | 8.209987e-53 | -8.615850e-47 |
| Msa0099480 | Msa0956600 | 0.817641 | 2.968208e-52 | -8.615850e-47 |
| Msa0099480 | Msa0971780 | 0.814940 | 1.192928e-51 | -8.615850e-47 |
| Msa0099480 | Msa0972930 | 0.820323 | 7.287052e-53 | -8.615850e-47 |
| Msa0099480 | Msa1018210 | 0.823704 | 1.200441e-53 | -8.615850e-47 |
| Msa0099480 | Msa1057940 | 0.803400 | 3.549976e-49 | -8.615850e-47 |
| Msa0099480 | Msa1104020 | 0.800386 | 1.476551e-48 | -8.615850e-47 |
| Msa0099480 | Msa1177360 | 0.805323 | 1.410866e-49 | -8.615850e-47 |
| Msa0099480 | Msa1213470 | 0.818815 | 1.609717e-52 | -8.615850e-47 |
| Msa0099480 | Msa1219530 | 0.800012 | 1.759433e-48 | -8.615850e-47 |
| Msa0099480 | Msa1300370 | 0.818584 | 1.815854e-52 | -8.615850e-47 |
| Msa0099480 | Msa1307110 | 0.801854 | 7.397341e-49 | -8.615850e-47 |
| Msa0099480 | Msa1359880 | 0.832370 | 9.829412e-56 | -8.615850e-47 |
| Msa0099480 | Msa1426690 | 0.804540 | 2.056671e-49 | -8.615850e-47 |
| Msa0099480 | Msa1433060 | 0.817704 | 2.872674e-52 | -8.615850e-47 |
| Msa0099480 | Msa1448840 | 0.816090 | 6.615648e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099480 | MtrunA17_Chr1g0150831 | 88.076 | 369 | 40 | 3 | 1 | 367 | 1 | 367 | 2.64e-171 | 481 |
| Msa0099480 | MtrunA17_Chr3g0136111 | 44.019 | 418 | 130 | 16 | 1 | 367 | 1 | 365 | 7.22e-56 | 187 |
| Msa0099480 | MtrunA17_Chr8g0343541 | 39.709 | 413 | 185 | 13 | 1 | 368 | 1 | 394 | 3.72e-35 | 133 |
| Msa0099480 | MtrunA17_Chr4g0070711 | 33.699 | 365 | 181 | 14 | 17 | 367 | 15 | 332 | 1.78e-22 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099480 | AT3G13980.1 | 40.530 | 264 | 84 | 7 | 136 | 368 | 124 | 345 | 2.33e-34 | 130 |
| Msa0099480 | AT1G54200.1 | 36.735 | 392 | 150 | 14 | 17 | 368 | 26 | 359 | 7.05e-32 | 124 |
| Msa0099480 | AT5G12050.1 | 32.915 | 398 | 171 | 13 | 16 | 365 | 7 | 356 | 6.68e-19 | 87.4 |
| Msa0099480 | AT3G42800.1 | 32.075 | 212 | 88 | 8 | 186 | 365 | 140 | 327 | 1.44e-13 | 71.6 |
Find 62 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTTGTTCTAACCGGTTT+TGG | 0.272024 | 1_3:-5689928 | None:intergenic |
| ATCTGCTTCTTCGTCTTTGT+TGG | 0.298054 | 1_3:-5690210 | None:intergenic |
| CGTCGATGGAACGGTAAATT+TGG | 0.311193 | 1_3:-5689594 | None:intergenic |
| TCCGATACAGATTCATTATA+CGG | 0.335788 | 1_3:+5689865 | Msa0099480:CDS |
| CAAGCGTGTCGGCATCATTT+AGG | 0.345034 | 1_3:+5689944 | Msa0099480:CDS |
| TAGGCTTGAAAAGGAGAAAC+AGG | 0.345846 | 1_3:+5689963 | Msa0099480:CDS |
| CGTCCTTCTTCTTCTTGTTA+CGG | 0.356974 | 1_3:-5690428 | None:intergenic |
| CAGTTCTACCTCAATTTCTT+CGG | 0.371586 | 1_3:+5689816 | Msa0099480:CDS |
| TTGGATCATTTGAGTGTGTT+TGG | 0.380923 | 1_3:+5690549 | Msa0099480:CDS |
| GGAAGAGGGTAGAGCTAAGG+TGG | 0.412222 | 1_3:+5690368 | Msa0099480:CDS |
| GCCGACACGCTTGTTCTAAC+CGG | 0.412919 | 1_3:-5689934 | None:intergenic |
| TCTTCTTCTTGTTACGGCTA+TGG | 0.415697 | 1_3:-5690422 | None:intergenic |
| GTTGGTTTGTTTAAAATCGT+TGG | 0.424352 | 1_3:-5689670 | None:intergenic |
| TAGGTGGAACTTTCTGTTGT+CGG | 0.435349 | 1_3:-5689764 | None:intergenic |
| CGTTCCACCTAGGCCAAAAC+CGG | 0.444322 | 1_3:+5689915 | Msa0099480:CDS |
| TGTGAGGAGCTTCCTGTGTA+TGG | 0.451538 | 1_3:+5690585 | Msa0099480:CDS |
| ATTTCTTCGGATTCTAGCTC+CGG | 0.469115 | 1_3:+5689829 | Msa0099480:CDS |
| AACGGTAAATTTGGTCTAAG+AGG | 0.473989 | 1_3:-5689585 | None:intergenic |
| GGCATCATTTAGGCTTGAAA+AGG | 0.486316 | 1_3:+5689954 | Msa0099480:CDS |
| AAGAGGGTGGAAGAGAATGA+AGG | 0.489820 | 1_3:-5689568 | None:intergenic |
| TGAGTGTGTTTGGAGATAGT+AGG | 0.500314 | 1_3:+5690559 | Msa0099480:CDS |
| TTTCTCCTTCGTCGATGGAA+CGG | 0.507353 | 1_3:-5689603 | None:intergenic |
| GGTGGAAGAGGGTAGAGCTA+AGG | 0.508069 | 1_3:+5690365 | Msa0099480:CDS |
| ATCATTTCTACCACAAAATG+AGG | 0.508732 | 1_3:-5690319 | None:intergenic |
| AGGGGAATCACGATTTCGAC+AGG | 0.517336 | 1_3:+5689983 | Msa0099480:CDS |
| AGAAAATCACGGCGAGGAAG+CGG | 0.522094 | 1_3:+5690038 | Msa0099480:CDS |
| GTGAAGCAACCGATTTCGCC+AGG | 0.534045 | 1_3:+5690114 | Msa0099480:CDS |
| TGGTAGAAATGATTACAAAA+CGG | 0.535489 | 1_3:+5690329 | Msa0099480:CDS |
| AACTGAAGAACAGAGCATCT+TGG | 0.537118 | 1_3:-5689798 | None:intergenic |
| CGTCGTGCTTCGTTCCACCT+AGG | 0.539775 | 1_3:+5689905 | Msa0099480:CDS |
| TGGAGATAGTAGGTATTGTG+AGG | 0.545793 | 1_3:+5690569 | Msa0099480:CDS |
| TATTAATCAAAATGAAGAAG+AGG | 0.551910 | 1_3:+5690476 | Msa0099480:CDS |
| GCTAGAATCCGAAGAAATTG+AGG | 0.552801 | 1_3:-5689824 | None:intergenic |
| AGAGGGTGGAAGAGAATGAA+GGG | 0.557335 | 1_3:-5689567 | None:intergenic |
| AGAGGGTAGAGCTAAGGTGG+AGG | 0.559315 | 1_3:+5690371 | Msa0099480:CDS |
| TAATGAATCTGTATCGGAGG+AGG | 0.579684 | 1_3:-5689860 | None:intergenic |
| TCCGTATAATGAATCTGTAT+CGG | 0.585229 | 1_3:-5689866 | None:intergenic |
| AAGGGTTTATGAACCTCTCG+TGG | 0.590814 | 1_3:-5689549 | None:intergenic |
| TCTTCGGATTCTAGCTCCGG+TGG | 0.592579 | 1_3:+5689832 | Msa0099480:CDS |
| ACGGTAAATTTGGTCTAAGA+GGG | 0.594369 | 1_3:-5689584 | None:intergenic |
| CGAAGAAGCAGATGAACACG+TGG | 0.595534 | 1_3:+5690220 | Msa0099480:CDS |
| ATCGGAGGAGGAGAATCCAC+CGG | 0.611196 | 1_3:-5689848 | None:intergenic |
| AATAAAGAACAAATCAAGAG+CGG | 0.611789 | 1_3:+5690065 | Msa0099480:CDS |
| TAGCCGTAACAAGAAGAAGA+AGG | 0.613655 | 1_3:+5690425 | Msa0099480:CDS |
| AAACAAAGCACAGAAAATCA+CGG | 0.616367 | 1_3:+5690027 | Msa0099480:CDS |
| GTAAATTTGGTCTAAGAGGG+TGG | 0.617354 | 1_3:-5689581 | None:intergenic |
| CTTGGTCGTGATCACGTAGG+TGG | 0.626477 | 1_3:-5689780 | None:intergenic |
| AGGCTTGAAAAGGAGAAACA+GGG | 0.627580 | 1_3:+5689964 | Msa0099480:CDS |
| GGATGAAGATGATGATGATG+TGG | 0.631674 | 1_3:+5690497 | Msa0099480:CDS |
| ATTTACCGTTCCATCGACGA+AGG | 0.641766 | 1_3:+5689598 | Msa0099480:CDS |
| CGAAGAAGCAGATGAACACG+TGG | 0.648153 | 1_3:-5690268 | None:intergenic |
| ACCGGTTAGAACAAGCGTGT+CGG | 0.655186 | 1_3:+5689933 | Msa0099480:CDS |
| GGCTTGAAAAGGAGAAACAG+GGG | 0.655509 | 1_3:+5689965 | Msa0099480:CDS |
| ATTTCTACCACAAAATGAGG+CGG | 0.655870 | 1_3:-5690316 | None:intergenic |
| TATTAGCAAACAGAGAGTTG+AGG | 0.659213 | 1_3:-5690155 | None:intergenic |
| AAGCAACCGATTTCGCCAGG+TGG | 0.662604 | 1_3:+5690117 | Msa0099480:CDS |
| GTATAATGAATCTGTATCGG+AGG | 0.669558 | 1_3:-5689863 | None:intergenic |
| ACACGAGTAGTTCCATACAC+AGG | 0.691654 | 1_3:-5690597 | None:intergenic |
| AGAGATCAACAAACCACGAG+AGG | 0.700583 | 1_3:+5689536 | Msa0099480:CDS |
| AAGCACAGAAAATCACGGCG+AGG | 0.718569 | 1_3:+5690032 | Msa0099480:CDS |
| CATCTTGGTCGTGATCACGT+AGG | 0.729154 | 1_3:-5689783 | None:intergenic |
| GAAGAAGCAGATGAACACGT+GGG | 0.763160 | 1_3:+5690221 | Msa0099480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATCAAAATGAAGAAG+AGG | + | chr1_3:5690476-5690495 | Msa0099480:CDS | 20.0% |
| !! | TATTAATCAAAATGAAGAAG+AGG | + | chr1_3:5690476-5690495 | Msa0099480:CDS | 20.0% |
| !!! | GTAAAATTTTGTTGATTCAG+TGG | - | chr1_3:5689638-5689657 | None:intergenic | 25.0% |
| !! | GTTATTGTTATGTTTTCTGT+CGG | - | chr1_3:5689698-5689717 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCGATTTT+TGG | - | chr1_3:5689730-5689749 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | + | chr1_3:5690065-5690084 | Msa0099480:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | + | chr1_3:5690329-5690348 | Msa0099480:CDS | 25.0% |
| !!! | GGACGATTTAGTTTTATTAA+AGG | + | chr1_3:5690446-5690465 | Msa0099480:CDS | 25.0% |
| !!! | GTAAAATTTTGTTGATTCAG+TGG | - | chr1_3:5689638-5689657 | None:intergenic | 25.0% |
| !! | GTTATTGTTATGTTTTCTGT+CGG | - | chr1_3:5689698-5689717 | None:intergenic | 25.0% |
| !!! | GAAACAGTTTTTTCGATTTT+TGG | - | chr1_3:5689730-5689749 | None:intergenic | 25.0% |
| ! | AATAAAGAACAAATCAAGAG+CGG | + | chr1_3:5690065-5690084 | Msa0099480:CDS | 25.0% |
| ! | TGGTAGAAATGATTACAAAA+CGG | + | chr1_3:5690329-5690348 | Msa0099480:CDS | 25.0% |
| !!! | GGACGATTTAGTTTTATTAA+AGG | + | chr1_3:5690446-5690465 | Msa0099480:CDS | 25.0% |
| !! | GTTGGTTTGTTTAAAATCGT+TGG | - | chr1_3:5689673-5689692 | None:intergenic | 30.0% |
| TCCGATACAGATTCATTATA+CGG | + | chr1_3:5689865-5689884 | Msa0099480:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | - | chr1_3:5689869-5689888 | None:intergenic | 30.0% | |
| AAACAAAGCACAGAAAATCA+CGG | + | chr1_3:5690027-5690046 | Msa0099480:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | - | chr1_3:5690322-5690341 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | + | chr1_3:5690530-5690549 | Msa0099480:CDS | 30.0% |
| !! | GTTGGTTTGTTTAAAATCGT+TGG | - | chr1_3:5689673-5689692 | None:intergenic | 30.0% |
| TCCGATACAGATTCATTATA+CGG | + | chr1_3:5689865-5689884 | Msa0099480:CDS | 30.0% | |
| TCCGTATAATGAATCTGTAT+CGG | - | chr1_3:5689869-5689888 | None:intergenic | 30.0% | |
| AAACAAAGCACAGAAAATCA+CGG | + | chr1_3:5690027-5690046 | Msa0099480:CDS | 30.0% | |
| ATCATTTCTACCACAAAATG+AGG | - | chr1_3:5690322-5690341 | None:intergenic | 30.0% | |
| !!! | AAGTTCTGATCTTTTTGAGT+TGG | + | chr1_3:5690530-5690549 | Msa0099480:CDS | 30.0% |
| ACGGTAAATTTGGTCTAAGA+GGG | - | chr1_3:5689587-5689606 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | - | chr1_3:5689588-5689607 | None:intergenic | 35.0% | |
| !! | TTATGTTTTCTGTCGGTTGT+TGG | - | chr1_3:5689691-5689710 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | + | chr1_3:5689816-5689835 | Msa0099480:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | - | chr1_3:5689866-5689885 | None:intergenic | 35.0% | |
| TATTAGCAAACAGAGAGTTG+AGG | - | chr1_3:5690158-5690177 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | - | chr1_3:5690319-5690338 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | + | chr1_3:5690342-5690361 | Msa0099480:CDS | 35.0% |
| ! | ACAAAACGGTACGTTTTTGT+GGG | + | chr1_3:5690343-5690362 | Msa0099480:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | + | chr1_3:5690549-5690568 | Msa0099480:CDS | 35.0% | |
| ACGGTAAATTTGGTCTAAGA+GGG | - | chr1_3:5689587-5689606 | None:intergenic | 35.0% | |
| AACGGTAAATTTGGTCTAAG+AGG | - | chr1_3:5689588-5689607 | None:intergenic | 35.0% | |
| !! | TTATGTTTTCTGTCGGTTGT+TGG | - | chr1_3:5689691-5689710 | None:intergenic | 35.0% |
| CAGTTCTACCTCAATTTCTT+CGG | + | chr1_3:5689816-5689835 | Msa0099480:CDS | 35.0% | |
| GTATAATGAATCTGTATCGG+AGG | - | chr1_3:5689866-5689885 | None:intergenic | 35.0% | |
| TATTAGCAAACAGAGAGTTG+AGG | - | chr1_3:5690158-5690177 | None:intergenic | 35.0% | |
| ATTTCTACCACAAAATGAGG+CGG | - | chr1_3:5690319-5690338 | None:intergenic | 35.0% | |
| ! | TACAAAACGGTACGTTTTTG+TGG | + | chr1_3:5690342-5690361 | Msa0099480:CDS | 35.0% |
| ! | ACAAAACGGTACGTTTTTGT+GGG | + | chr1_3:5690343-5690362 | Msa0099480:CDS | 35.0% |
| TTGGATCATTTGAGTGTGTT+TGG | + | chr1_3:5690549-5690568 | Msa0099480:CDS | 35.0% | |
| GTAAATTTGGTCTAAGAGGG+TGG | - | chr1_3:5689584-5689603 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTTCGTCGA+TGG | - | chr1_3:5689611-5689630 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | - | chr1_3:5689767-5689786 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | - | chr1_3:5689801-5689820 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | - | chr1_3:5689827-5689846 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | + | chr1_3:5689829-5689848 | Msa0099480:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | - | chr1_3:5689863-5689882 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | + | chr1_3:5689954-5689973 | Msa0099480:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | + | chr1_3:5689963-5689982 | Msa0099480:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | + | chr1_3:5689964-5689983 | Msa0099480:CDS | 40.0% | |
| ATCTGCTTCTTCGTCTTTGT+TGG | - | chr1_3:5690213-5690232 | None:intergenic | 40.0% | |
| ! | CAAAACGGTACGTTTTTGTG+GGG | + | chr1_3:5690344-5690363 | Msa0099480:CDS | 40.0% |
| TCTTCTTCTTGTTACGGCTA+TGG | - | chr1_3:5690425-5690444 | None:intergenic | 40.0% | |
| TAGCCGTAACAAGAAGAAGA+AGG | + | chr1_3:5690425-5690444 | Msa0099480:CDS | 40.0% | |
| CGTCCTTCTTCTTCTTGTTA+CGG | - | chr1_3:5690431-5690450 | None:intergenic | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | + | chr1_3:5690497-5690516 | Msa0099480:CDS | 40.0% |
| TGAGTGTGTTTGGAGATAGT+AGG | + | chr1_3:5690559-5690578 | Msa0099480:CDS | 40.0% | |
| ! | TGGAGATAGTAGGTATTGTG+AGG | + | chr1_3:5690569-5690588 | Msa0099480:CDS | 40.0% |
| GTAAATTTGGTCTAAGAGGG+TGG | - | chr1_3:5689584-5689603 | None:intergenic | 40.0% | |
| !! | TTTTGTTTCTCCTTCGTCGA+TGG | - | chr1_3:5689611-5689630 | None:intergenic | 40.0% |
| TAGGTGGAACTTTCTGTTGT+CGG | - | chr1_3:5689767-5689786 | None:intergenic | 40.0% | |
| ! | AACTGAAGAACAGAGCATCT+TGG | - | chr1_3:5689801-5689820 | None:intergenic | 40.0% |
| GCTAGAATCCGAAGAAATTG+AGG | - | chr1_3:5689827-5689846 | None:intergenic | 40.0% | |
| !! | ATTTCTTCGGATTCTAGCTC+CGG | + | chr1_3:5689829-5689848 | Msa0099480:CDS | 40.0% |
| TAATGAATCTGTATCGGAGG+AGG | - | chr1_3:5689863-5689882 | None:intergenic | 40.0% | |
| GGCATCATTTAGGCTTGAAA+AGG | + | chr1_3:5689954-5689973 | Msa0099480:CDS | 40.0% | |
| TAGGCTTGAAAAGGAGAAAC+AGG | + | chr1_3:5689963-5689982 | Msa0099480:CDS | 40.0% | |
| AGGCTTGAAAAGGAGAAACA+GGG | + | chr1_3:5689964-5689983 | Msa0099480:CDS | 40.0% | |
| ATCTGCTTCTTCGTCTTTGT+TGG | - | chr1_3:5690213-5690232 | None:intergenic | 40.0% | |
| ! | CAAAACGGTACGTTTTTGTG+GGG | + | chr1_3:5690344-5690363 | Msa0099480:CDS | 40.0% |
| TCTTCTTCTTGTTACGGCTA+TGG | - | chr1_3:5690425-5690444 | None:intergenic | 40.0% | |
| TAGCCGTAACAAGAAGAAGA+AGG | + | chr1_3:5690425-5690444 | Msa0099480:CDS | 40.0% | |
| CGTCCTTCTTCTTCTTGTTA+CGG | - | chr1_3:5690431-5690450 | None:intergenic | 40.0% | |
| ! | GGATGAAGATGATGATGATG+TGG | + | chr1_3:5690497-5690516 | Msa0099480:CDS | 40.0% |
| TGAGTGTGTTTGGAGATAGT+AGG | + | chr1_3:5690559-5690578 | Msa0099480:CDS | 40.0% | |
| ! | TGGAGATAGTAGGTATTGTG+AGG | + | chr1_3:5690569-5690588 | Msa0099480:CDS | 40.0% |
| AGAGATCAACAAACCACGAG+AGG | + | chr1_3:5689536-5689555 | Msa0099480:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | - | chr1_3:5689552-5689571 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | - | chr1_3:5689570-5689589 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | - | chr1_3:5689571-5689590 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | - | chr1_3:5689597-5689616 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGA+AGG | + | chr1_3:5689598-5689617 | Msa0099480:CDS | 45.0% | |
| TTTCTCCTTCGTCGATGGAA+CGG | - | chr1_3:5689606-5689625 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | - | chr1_3:5689931-5689950 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | + | chr1_3:5689965-5689984 | Msa0099480:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | - | chr1_3:5690126-5690145 | None:intergenic | 45.0% |
| ! | AAACTCGTGAGTTTTCCACC+TGG | - | chr1_3:5690135-5690154 | None:intergenic | 45.0% |
| GAAGAAGCAGATGAACACGT+GGG | + | chr1_3:5690221-5690240 | Msa0099480:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | + | chr1_3:5690277-5690296 | Msa0099480:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | + | chr1_3:5690309-5690328 | Msa0099480:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | - | chr1_3:5690600-5690619 | None:intergenic | 45.0% | |
| AGAGATCAACAAACCACGAG+AGG | + | chr1_3:5689536-5689555 | Msa0099480:CDS | 45.0% | |
| AAGGGTTTATGAACCTCTCG+TGG | - | chr1_3:5689552-5689571 | None:intergenic | 45.0% | |
| AGAGGGTGGAAGAGAATGAA+GGG | - | chr1_3:5689570-5689589 | None:intergenic | 45.0% | |
| AAGAGGGTGGAAGAGAATGA+AGG | - | chr1_3:5689571-5689590 | None:intergenic | 45.0% | |
| CGTCGATGGAACGGTAAATT+TGG | - | chr1_3:5689597-5689616 | None:intergenic | 45.0% | |
| ATTTACCGTTCCATCGACGA+AGG | + | chr1_3:5689598-5689617 | Msa0099480:CDS | 45.0% | |
| TTTCTCCTTCGTCGATGGAA+CGG | - | chr1_3:5689606-5689625 | None:intergenic | 45.0% | |
| !! | ACGCTTGTTCTAACCGGTTT+TGG | - | chr1_3:5689931-5689950 | None:intergenic | 45.0% |
| GGCTTGAAAAGGAGAAACAG+GGG | + | chr1_3:5689965-5689984 | Msa0099480:CDS | 45.0% | |
| ! | AGTTTTCCACCTGGCGAAAT+CGG | - | chr1_3:5690126-5690145 | None:intergenic | 45.0% |
| ! | AAACTCGTGAGTTTTCCACC+TGG | - | chr1_3:5690135-5690154 | None:intergenic | 45.0% |
| GAAGAAGCAGATGAACACGT+GGG | + | chr1_3:5690221-5690240 | Msa0099480:CDS | 45.0% | |
| ! | CATCTGCTTCTTCGTTTTCG+CGG | + | chr1_3:5690277-5690296 | Msa0099480:CDS | 45.0% |
| ! | AGCAAAACCGCCTCATTTTG+TGG | + | chr1_3:5690309-5690328 | Msa0099480:CDS | 45.0% |
| ACACGAGTAGTTCCATACAC+AGG | - | chr1_3:5690600-5690619 | None:intergenic | 45.0% | |
| CATCTTGGTCGTGATCACGT+AGG | - | chr1_3:5689786-5689805 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | - | chr1_3:5689925-5689944 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | + | chr1_3:5689933-5689952 | Msa0099480:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | + | chr1_3:5689944-5689963 | Msa0099480:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | + | chr1_3:5689983-5690002 | Msa0099480:CDS | 50.0% | |
| AAGCACAGAAAATCACGGCG+AGG | + | chr1_3:5690032-5690051 | Msa0099480:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | + | chr1_3:5690038-5690057 | Msa0099480:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1_3:5690220-5690239 | Msa0099480:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | - | chr1_3:5690220-5690239 | None:intergenic | 50.0% | |
| ! | AACGGTACGTTTTTGTGGGG+TGG | + | chr1_3:5690347-5690366 | Msa0099480:CDS | 50.0% |
| ! | ACGTTTTTGTGGGGTGGAAG+AGG | + | chr1_3:5690353-5690372 | Msa0099480:CDS | 50.0% |
| ! | CGTTTTTGTGGGGTGGAAGA+GGG | + | chr1_3:5690354-5690373 | Msa0099480:CDS | 50.0% |
| TGTGAGGAGCTTCCTGTGTA+TGG | + | chr1_3:5690585-5690604 | Msa0099480:CDS | 50.0% | |
| CATCTTGGTCGTGATCACGT+AGG | - | chr1_3:5689786-5689805 | None:intergenic | 50.0% | |
| !! | GTTCTAACCGGTTTTGGCCT+AGG | - | chr1_3:5689925-5689944 | None:intergenic | 50.0% |
| ACCGGTTAGAACAAGCGTGT+CGG | + | chr1_3:5689933-5689952 | Msa0099480:CDS | 50.0% | |
| ! | CAAGCGTGTCGGCATCATTT+AGG | + | chr1_3:5689944-5689963 | Msa0099480:CDS | 50.0% |
| AGGGGAATCACGATTTCGAC+AGG | + | chr1_3:5689983-5690002 | Msa0099480:CDS | 50.0% | |
| AAGCACAGAAAATCACGGCG+AGG | + | chr1_3:5690032-5690051 | Msa0099480:CDS | 50.0% | |
| AGAAAATCACGGCGAGGAAG+CGG | + | chr1_3:5690038-5690057 | Msa0099480:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | + | chr1_3:5690220-5690239 | Msa0099480:CDS | 50.0% | |
| CGAAGAAGCAGATGAACACG+TGG | - | chr1_3:5690220-5690239 | None:intergenic | 50.0% | |
| ! | AACGGTACGTTTTTGTGGGG+TGG | + | chr1_3:5690347-5690366 | Msa0099480:CDS | 50.0% |
| ! | ACGTTTTTGTGGGGTGGAAG+AGG | + | chr1_3:5690353-5690372 | Msa0099480:CDS | 50.0% |
| ! | CGTTTTTGTGGGGTGGAAGA+GGG | + | chr1_3:5690354-5690373 | Msa0099480:CDS | 50.0% |
| TGTGAGGAGCTTCCTGTGTA+TGG | + | chr1_3:5690585-5690604 | Msa0099480:CDS | 50.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | - | chr1_3:5689783-5689802 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | + | chr1_3:5689832-5689851 | Msa0099480:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | - | chr1_3:5689851-5689870 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | + | chr1_3:5689915-5689934 | Msa0099480:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | - | chr1_3:5689922-5689941 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | - | chr1_3:5689937-5689956 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | + | chr1_3:5690114-5690133 | Msa0099480:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | + | chr1_3:5690117-5690136 | Msa0099480:CDS | 55.0% |
| GGTGGAAGAGGGTAGAGCTA+AGG | + | chr1_3:5690365-5690384 | Msa0099480:CDS | 55.0% | |
| GGAAGAGGGTAGAGCTAAGG+TGG | + | chr1_3:5690368-5690387 | Msa0099480:CDS | 55.0% | |
| AGAGGGTAGAGCTAAGGTGG+AGG | + | chr1_3:5690371-5690390 | Msa0099480:CDS | 55.0% | |
| CTTGGTCGTGATCACGTAGG+TGG | - | chr1_3:5689783-5689802 | None:intergenic | 55.0% | |
| !! | TCTTCGGATTCTAGCTCCGG+TGG | + | chr1_3:5689832-5689851 | Msa0099480:CDS | 55.0% |
| ATCGGAGGAGGAGAATCCAC+CGG | - | chr1_3:5689851-5689870 | None:intergenic | 55.0% | |
| CGTTCCACCTAGGCCAAAAC+CGG | + | chr1_3:5689915-5689934 | Msa0099480:CDS | 55.0% | |
| !! | CTAACCGGTTTTGGCCTAGG+TGG | - | chr1_3:5689922-5689941 | None:intergenic | 55.0% |
| GCCGACACGCTTGTTCTAAC+CGG | - | chr1_3:5689937-5689956 | None:intergenic | 55.0% | |
| ! | GTGAAGCAACCGATTTCGCC+AGG | + | chr1_3:5690114-5690133 | Msa0099480:CDS | 55.0% |
| ! | AAGCAACCGATTTCGCCAGG+TGG | + | chr1_3:5690117-5690136 | Msa0099480:CDS | 55.0% |
| GGTGGAAGAGGGTAGAGCTA+AGG | + | chr1_3:5690365-5690384 | Msa0099480:CDS | 55.0% | |
| GGAAGAGGGTAGAGCTAAGG+TGG | + | chr1_3:5690368-5690387 | Msa0099480:CDS | 55.0% | |
| AGAGGGTAGAGCTAAGGTGG+AGG | + | chr1_3:5690371-5690390 | Msa0099480:CDS | 55.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | + | chr1_3:5689905-5689924 | Msa0099480:CDS | 60.0% | |
| CGTCGTGCTTCGTTCCACCT+AGG | + | chr1_3:5689905-5689924 | Msa0099480:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5689520 | 5690626 | 5689520 | ID=Msa0099480;Name=Msa0099480 |
| chr1_3 | mRNA | 5689520 | 5690626 | 5689520 | ID=Msa0099480-mRNA-1;Parent=Msa0099480;Name=Msa0099480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|368 |
| chr1_3 | exon | 5689520 | 5690626 | 5689520 | ID=Msa0099480-mRNA-1:exon:2170;Parent=Msa0099480-mRNA-1 |
| chr1_3 | CDS | 5689520 | 5690626 | 5689520 | ID=Msa0099480-mRNA-1:cds;Parent=Msa0099480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
