Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0722960 | XP_003613269.2 | 95.556 | 495 | 13 | 2 | 1 | 486 | 66 | 560 | 0.0 | 964 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0722960 | G7K1H4 | 95.556 | 495 | 13 | 2 | 1 | 486 | 66 | 560 | 0.0 | 964 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012080 | Msa0722960 | 0.822205 | 2.683192e-53 | -8.615850e-47 |
Msa0016670 | Msa0722960 | 0.850088 | 2.128548e-60 | -8.615850e-47 |
Msa0017510 | Msa0722960 | 0.804167 | 2.459878e-49 | -8.615850e-47 |
Msa0027260 | Msa0722960 | 0.805191 | 1.503449e-49 | -8.615850e-47 |
Msa0028640 | Msa0722960 | 0.801386 | 9.228821e-49 | -8.615850e-47 |
Msa0032090 | Msa0722960 | 0.816148 | 6.419079e-52 | -8.615850e-47 |
Msa0032430 | Msa0722960 | 0.815941 | 7.140274e-52 | -8.615850e-47 |
Msa0040690 | Msa0722960 | 0.827804 | 1.278158e-54 | -8.615850e-47 |
Msa0050390 | Msa0722960 | 0.806499 | 7.984767e-50 | -8.615850e-47 |
Msa0063890 | Msa0722960 | 0.808415 | 3.132079e-50 | -8.615850e-47 |
Msa0074240 | Msa0722960 | 0.802680 | 5.000850e-49 | -8.615850e-47 |
Msa0074320 | Msa0722960 | 0.834694 | 2.584244e-56 | -8.615850e-47 |
Msa0079380 | Msa0722960 | 0.812864 | 3.420184e-51 | -8.615850e-47 |
Msa0094120 | Msa0722960 | 0.801008 | 1.102837e-48 | -8.615850e-47 |
Msa0094140 | Msa0722960 | 0.808189 | 3.500269e-50 | -8.615850e-47 |
Msa0101440 | Msa0722960 | 0.810142 | 1.335489e-50 | -8.615850e-47 |
Msa0110970 | Msa0722960 | 0.831007 | 2.129949e-55 | -8.615850e-47 |
Msa0615440 | Msa0722960 | 0.803677 | 3.109575e-49 | -8.615850e-47 |
Msa0616020 | Msa0722960 | 0.801045 | 1.083767e-48 | -8.615850e-47 |
Msa0616220 | Msa0722960 | 0.813347 | 2.679647e-51 | -8.615850e-47 |
Msa0623080 | Msa0722960 | 0.800476 | 1.415530e-48 | -8.615850e-47 |
Msa0625070 | Msa0722960 | 0.812886 | 3.383064e-51 | -8.615850e-47 |
Msa0647130 | Msa0722960 | 0.808407 | 3.145359e-50 | -8.615850e-47 |
Msa0650020 | Msa0722960 | 0.807506 | 4.888510e-50 | -8.615850e-47 |
Msa0677290 | Msa0722960 | 0.824338 | 8.520411e-54 | -8.615850e-47 |
Msa0682330 | Msa0722960 | 0.802792 | 4.742180e-49 | -8.615850e-47 |
Msa0692080 | Msa0722960 | 0.809070 | 2.269614e-50 | -8.615850e-47 |
Msa0698490 | Msa0722960 | 0.805538 | 1.272012e-49 | -8.615850e-47 |
Msa0698660 | Msa0722960 | 0.809251 | 2.075310e-50 | -8.615850e-47 |
Msa0698920 | Msa0722960 | 0.820115 | 8.135487e-53 | -8.615850e-47 |
Msa0699550 | Msa0722960 | 0.800052 | 1.726587e-48 | -8.615850e-47 |
Msa0701280 | Msa0722960 | 0.812582 | 3.943679e-51 | -8.615850e-47 |
Msa0703230 | Msa0722960 | 0.803810 | 2.918133e-49 | -8.615850e-47 |
Msa0708520 | Msa0722960 | 0.815381 | 9.519765e-52 | -8.615850e-47 |
Msa0722810 | Msa0722960 | 0.972343 | 1.302312e-134 | -8.615850e-47 |
Msa0722960 | Msa0730430 | 0.813218 | 2.860674e-51 | -8.615850e-47 |
Msa0722960 | Msa0750880 | 0.812037 | 5.184716e-51 | -8.615850e-47 |
Msa0722960 | Msa0763830 | 0.958278 | 3.498067e-116 | -8.615850e-47 |
Msa0722960 | Msa0813740 | 0.829986 | 3.786796e-55 | -8.615850e-47 |
Msa0722960 | Msa0828560 | 0.822879 | 1.870578e-53 | -8.615850e-47 |
Msa0722960 | Msa0850960 | 0.838468 | 2.825407e-57 | -8.615850e-47 |
Msa0722960 | Msa0861870 | 0.803159 | 3.982305e-49 | -8.615850e-47 |
Msa0722960 | Msa0876190 | 0.830133 | 3.486983e-55 | -8.615850e-47 |
Msa0722960 | Msa0876200 | 0.823272 | 1.514417e-53 | -8.615850e-47 |
Msa0722960 | Msa0878500 | 0.812428 | 4.261297e-51 | -8.615850e-47 |
Msa0722960 | Msa0880140 | 0.803001 | 4.292528e-49 | -8.615850e-47 |
Msa0722960 | Msa0893480 | -0.801088 | 1.061903e-48 | -8.615850e-47 |
Msa0722960 | Msa0930780 | 0.807465 | 4.989221e-50 | -8.615850e-47 |
Msa0722960 | Msa0937670 | 0.801108 | 1.051986e-48 | -8.615850e-47 |
Msa0722960 | Msa0944190 | 0.822957 | 1.793936e-53 | -8.615850e-47 |
Msa0722960 | Msa0970420 | 0.817780 | 2.760851e-52 | -8.615850e-47 |
Msa0722960 | Msa1019640 | 0.800444 | 1.436833e-48 | -8.615850e-47 |
Msa0722960 | Msa1029250 | 0.804468 | 2.129661e-49 | -8.615850e-47 |
Msa0722960 | Msa1045140 | 0.808663 | 2.773222e-50 | -8.615850e-47 |
Msa0722960 | Msa1046300 | 0.812094 | 5.040207e-51 | -8.615850e-47 |
Msa0722960 | Msa1054240 | 0.801228 | 9.943346e-49 | -8.615850e-47 |
Msa0722960 | Msa1066490 | 0.813812 | 2.117175e-51 | -8.615850e-47 |
Msa0722960 | Msa1081150 | 0.807328 | 5.332553e-50 | -8.615850e-47 |
Msa0722960 | Msa1082700 | 0.810280 | 1.247094e-50 | -8.615850e-47 |
Msa0722960 | Msa1087710 | 0.804009 | 2.653256e-49 | -8.615850e-47 |
Msa0722960 | Msa1097640 | 0.800115 | 1.676824e-48 | -8.615850e-47 |
Msa0722960 | Msa1104140 | 0.812042 | 5.173255e-51 | -8.615850e-47 |
Msa0722960 | Msa1104370 | 0.813016 | 3.167606e-51 | -8.615850e-47 |
Msa0722960 | Msa1106700 | 0.821957 | 3.062401e-53 | -8.615850e-47 |
Msa0722960 | Msa1124110 | 0.804795 | 1.819684e-49 | -8.615850e-47 |
Msa0722960 | Msa1139810 | 0.808839 | 2.542194e-50 | -8.615850e-47 |
Msa0722960 | Msa1143650 | 0.806946 | 6.424471e-50 | -8.615850e-47 |
Msa0722960 | Msa1147900 | 0.811600 | 6.455367e-51 | -8.615850e-47 |
Msa0722960 | Msa1154710 | 0.817598 | 3.034362e-52 | -8.615850e-47 |
Msa0722960 | Msa1168950 | 0.807463 | 4.993463e-50 | -8.615850e-47 |
Msa0722960 | Msa1201650 | 0.800128 | 1.666432e-48 | -8.615850e-47 |
Msa0722960 | Msa1209460 | 0.805951 | 1.041822e-49 | -8.615850e-47 |
Msa0722960 | Msa1226620 | 0.816962 | 4.219341e-52 | -8.615850e-47 |
Msa0722960 | Msa1231550 | 0.842872 | 1.983330e-58 | -8.615850e-47 |
Msa0722960 | Msa1232710 | 0.813237 | 2.833889e-51 | -8.615850e-47 |
Msa0722960 | Msa1242240 | 0.807646 | 4.565723e-50 | -8.615850e-47 |
Msa0722960 | Msa1252190 | 0.836755 | 7.770841e-57 | -8.615850e-47 |
Msa0722960 | Msa1274060 | 0.810097 | 1.365454e-50 | -8.615850e-47 |
Msa0722960 | Msa1274280 | 0.818898 | 1.541399e-52 | -8.615850e-47 |
Msa0722960 | Msa1276660 | 0.803086 | 4.121936e-49 | -8.615850e-47 |
Msa0722960 | Msa1283840 | 0.818516 | 1.881697e-52 | -8.615850e-47 |
Msa0722960 | Msa1284260 | 0.809729 | 1.638491e-50 | -8.615850e-47 |
Msa0722960 | Msa1292830 | 0.821014 | 5.055693e-53 | -8.615850e-47 |
Msa0722960 | Msa1313300 | 0.813503 | 2.476995e-51 | -8.615850e-47 |
Msa0722960 | Msa1331590 | 0.826433 | 2.719852e-54 | -8.615850e-47 |
Msa0722960 | Msa1343070 | 0.811762 | 5.952775e-51 | -8.615850e-47 |
Msa0722960 | Msa1353060 | 0.817030 | 4.072696e-52 | -8.615850e-47 |
Msa0722960 | Msa1363330 | 0.802369 | 5.796585e-49 | -8.615850e-47 |
Msa0722960 | Msa1371430 | 0.800562 | 1.359953e-48 | -8.615850e-47 |
Msa0722960 | Msa1373330 | 0.815235 | 1.025888e-51 | -8.615850e-47 |
Msa0722960 | Msa1374120 | 0.812703 | 3.709536e-51 | -8.615850e-47 |
Msa0722960 | Msa1386600 | 0.802720 | 4.907248e-49 | -8.615850e-47 |
Msa0722960 | Msa1387870 | 0.804977 | 1.666841e-49 | -8.615850e-47 |
Msa0722960 | Msa1406040 | 0.808253 | 3.391795e-50 | -8.615850e-47 |
Msa0722960 | Msa1414490 | 0.820345 | 7.205907e-53 | -8.615850e-47 |
Msa0722960 | Msa1419370 | 0.805267 | 1.449645e-49 | -8.615850e-47 |
Msa0722960 | Msa1423350 | 0.814831 | 1.261084e-51 | -8.615850e-47 |
Msa0722960 | Msa1430280 | 0.815220 | 1.033707e-51 | -8.615850e-47 |
Msa0722960 | Msa1459380 | 0.800056 | 1.723536e-48 | -8.615850e-47 |
Msa0124060 | Msa0722960 | 0.802603 | 5.186708e-49 | -8.615850e-47 |
Msa0124340 | Msa0722960 | 0.800267 | 1.561509e-48 | -8.615850e-47 |
Msa0136070 | Msa0722960 | 0.834766 | 2.478703e-56 | -8.615850e-47 |
Msa0136100 | Msa0722960 | 0.831646 | 1.483112e-55 | -8.615850e-47 |
Msa0138820 | Msa0722960 | -0.803876 | 2.828153e-49 | -8.615850e-47 |
Msa0152140 | Msa0722960 | 0.814731 | 1.326763e-51 | -8.615850e-47 |
Msa0157290 | Msa0722960 | 0.804421 | 2.177839e-49 | -8.615850e-47 |
Msa0168500 | Msa0722960 | 0.813520 | 2.455365e-51 | -8.615850e-47 |
Msa0172070 | Msa0722960 | 0.818943 | 1.505154e-52 | -8.615850e-47 |
Msa0186890 | Msa0722960 | 0.801787 | 7.637062e-49 | -8.615850e-47 |
Msa0187690 | Msa0722960 | 0.828400 | 9.180595e-55 | -8.615850e-47 |
Msa0187930 | Msa0722960 | 0.802958 | 4.382846e-49 | -8.615850e-47 |
Msa0192510 | Msa0722960 | 0.817353 | 3.445317e-52 | -8.615850e-47 |
Msa0193120 | Msa0722960 | 0.832964 | 6.999936e-56 | -8.615850e-47 |
Msa0194540 | Msa0722960 | 0.814306 | 1.647923e-51 | -8.615850e-47 |
Msa0197890 | Msa0722960 | 0.821925 | 3.115931e-53 | -8.615850e-47 |
Msa0225740 | Msa0722960 | 0.809771 | 1.604788e-50 | -8.615850e-47 |
Msa0225760 | Msa0722960 | 0.807069 | 6.052044e-50 | -8.615850e-47 |
Msa0395960 | Msa0722960 | 0.809174 | 2.155815e-50 | -8.615850e-47 |
Msa0419820 | Msa0722960 | 0.820708 | 5.947919e-53 | -8.615850e-47 |
Msa0422850 | Msa0722960 | 0.820175 | 7.881872e-53 | -8.615850e-47 |
Msa0422930 | Msa0722960 | 0.820348 | 7.193381e-53 | -8.615850e-47 |
Msa0432770 | Msa0722960 | 0.803843 | 2.872286e-49 | -8.615850e-47 |
Msa0443500 | Msa0722960 | 0.802608 | 5.174522e-49 | -8.615850e-47 |
Msa0457470 | Msa0722960 | 0.809239 | 2.087606e-50 | -8.615850e-47 |
Msa0467300 | Msa0722960 | 0.807775 | 4.287411e-50 | -8.615850e-47 |
Msa0480000 | Msa0722960 | 0.803622 | 3.192439e-49 | -8.615850e-47 |
Msa0261340 | Msa0722960 | 0.807264 | 5.503630e-50 | -8.615850e-47 |
Msa0262310 | Msa0722960 | 0.807250 | 5.540937e-50 | -8.615850e-47 |
Msa0262340 | Msa0722960 | 0.813343 | 2.685381e-51 | -8.615850e-47 |
Msa0268130 | Msa0722960 | 0.813863 | 2.063251e-51 | -8.615850e-47 |
Msa0292400 | Msa0722960 | 0.848816 | 4.816453e-60 | -8.615850e-47 |
Msa0298990 | Msa0722960 | 0.804318 | 2.288446e-49 | -8.615850e-47 |
Msa0300690 | Msa0722960 | 0.803836 | 2.882245e-49 | -8.615850e-47 |
Msa0304300 | Msa0722960 | 0.803510 | 3.367622e-49 | -8.615850e-47 |
Msa0304510 | Msa0722960 | 0.804460 | 2.137892e-49 | -8.615850e-47 |
Msa0306300 | Msa0722960 | 0.815315 | 9.847670e-52 | -8.615850e-47 |
Msa0317250 | Msa0722960 | 0.815778 | 7.763582e-52 | -8.615850e-47 |
Msa0317310 | Msa0722960 | 0.805162 | 1.524955e-49 | -8.615850e-47 |
Msa0337620 | Msa0722960 | 0.827082 | 1.903481e-54 | -8.615850e-47 |
Msa0339480 | Msa0722960 | 0.816052 | 6.746966e-52 | -8.615850e-47 |
Msa0498060 | Msa0722960 | 0.821549 | 3.807046e-53 | -8.615850e-47 |
Msa0511310 | Msa0722960 | 0.806776 | 6.980839e-50 | -8.615850e-47 |
Msa0521880 | Msa0722960 | 0.831723 | 1.420215e-55 | -8.615850e-47 |
Msa0526540 | Msa0722960 | 0.800485 | 1.409685e-48 | -8.615850e-47 |
Msa0529680 | Msa0722960 | 0.809186 | 2.142503e-50 | -8.615850e-47 |
Msa0541860 | Msa0722960 | 0.803334 | 3.663376e-49 | -8.615850e-47 |
Msa0546680 | Msa0722960 | 0.806124 | 9.580931e-50 | -8.615850e-47 |
Msa0565960 | Msa0722960 | 0.823760 | 1.164380e-53 | -8.615850e-47 |
Msa0569200 | Msa0722960 | 0.820415 | 6.941629e-53 | -8.615850e-47 |
Msa0576690 | Msa0722960 | 0.830754 | 2.457790e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0722960 | MtrunA17_Chr5g0413801 | 95.556 | 495 | 13 | 2 | 1 | 486 | 66 | 560 | 0.0 | 964 |
Msa0722960 | MtrunA17_Chr8g0364941 | 68.064 | 501 | 97 | 7 | 1 | 486 | 69 | 521 | 0.0 | 632 |
Msa0722960 | MtrunA17_Chr6g0451131 | 59.218 | 358 | 119 | 8 | 1 | 331 | 66 | 423 | 3.10e-129 | 386 |
Msa0722960 | MtrunA17_Chr2g0315511 | 43.402 | 341 | 159 | 11 | 1 | 332 | 62 | 377 | 1.10e-72 | 238 |
Msa0722960 | MtrunA17_Chr8g0359721 | 57.516 | 153 | 64 | 1 | 53 | 205 | 24 | 175 | 1.93e-50 | 170 |
Msa0722960 | MtrunA17_Chr8g0364901 | 32.210 | 267 | 162 | 6 | 5 | 267 | 31 | 282 | 2.25e-33 | 130 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0722960 | AT1G70280.1 | 68.079 | 354 | 100 | 5 | 1 | 346 | 1 | 349 | 1.55e-166 | 478 |
Msa0722960 | AT1G70280.2 | 68.079 | 354 | 100 | 5 | 1 | 346 | 63 | 411 | 2.09e-165 | 477 |
Msa0722960 | AT1G23880.2 | 65.254 | 354 | 114 | 5 | 1 | 346 | 1 | 353 | 8.41e-156 | 449 |
Msa0722960 | AT1G23880.1 | 65.254 | 354 | 114 | 5 | 1 | 346 | 125 | 477 | 1.67e-154 | 451 |
Msa0722960 | AT5G14890.1 | 55.522 | 335 | 122 | 9 | 1 | 319 | 71 | 394 | 2.71e-109 | 333 |
Msa0722960 | AT3G14860.1 | 44.654 | 318 | 159 | 7 | 1 | 315 | 70 | 373 | 6.96e-77 | 249 |
Msa0722960 | AT3G14860.2 | 44.688 | 320 | 157 | 8 | 1 | 315 | 70 | 374 | 1.01e-76 | 249 |
Msa0722960 | AT1G23890.1 | 48.837 | 172 | 83 | 4 | 2 | 171 | 23 | 191 | 1.68e-42 | 152 |
Msa0722960 | AT1G23890.2 | 48.837 | 172 | 83 | 4 | 2 | 171 | 23 | 191 | 3.38e-41 | 152 |
Find 132 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGCATTTATTTGCCTTTC+AGG | 0.119350 | 5_1:-20527718 | None:intergenic |
TTCTTAGGGGTTGGAGTTCT+TGG | 0.127961 | 5_1:-20527796 | None:intergenic |
CACCAGGGCGACTGAAAATT+TGG | 0.170155 | 5_1:-20528479 | None:intergenic |
AAGGCAAGATCAAGAAATTT+TGG | 0.177285 | 5_1:+20528531 | Msa0722960:three_prime_UTR |
GAACATTGAGCATAATTTAA+AGG | 0.196182 | 5_1:+20528512 | Msa0722960:three_prime_UTR |
TAATGGGGAGCTTCTGATTC+TGG | 0.211291 | 5_1:+20525696 | Msa0722960:CDS |
CTTCTCGGTGCTGGCTTCTT+TGG | 0.219575 | 5_1:+20526882 | Msa0722960:CDS |
TAGTGGAAATAATGGGTTTC+AGG | 0.231590 | 5_1:+20527647 | Msa0722960:CDS |
ATTAGGAAAATTAGCGATTC+AGG | 0.250879 | 5_1:+20526008 | Msa0722960:CDS |
GCAGATCCTGCCACAAGTTT+TGG | 0.290153 | 5_1:-20525867 | None:intergenic |
CAAGGTAGAGCGCTCTATTA+TGG | 0.290949 | 5_1:+20527868 | Msa0722960:CDS |
TCAGGGGTTACGACAATTGC+TGG | 0.292338 | 5_1:+20526575 | Msa0722960:intron |
TTATTTGCCTTTCAGGTTGA+TGG | 0.296462 | 5_1:-20527711 | None:intergenic |
TGACAGATTTCAACGGCTTT+TGG | 0.297398 | 5_1:-20527528 | None:intergenic |
TGTTGCAGATATTATGAATA+TGG | 0.304153 | 5_1:+20525983 | Msa0722960:CDS |
GAAACCAATGAGATAGTATT+TGG | 0.308736 | 5_1:+20528189 | Msa0722960:CDS |
GGATCTGCTGAAGGATATTC+TGG | 0.315805 | 5_1:+20525882 | Msa0722960:CDS |
CTTTCAGGTTGATGGAATAA+AGG | 0.334420 | 5_1:-20527703 | None:intergenic |
CAGAAACTTATTTGTTTCTT+CGG | 0.337333 | 5_1:+20528451 | Msa0722960:three_prime_UTR |
GTCTGTAGTTATCAAGCCTT+TGG | 0.338039 | 5_1:+20528239 | Msa0722960:CDS |
GCAGTTGAGGTGTTGTCTAA+TGG | 0.342329 | 5_1:+20525679 | Msa0722960:CDS |
TTGATTTCACCCTCCCCTAT+TGG | 0.343493 | 5_1:-20528366 | None:intergenic |
GTTATCAAGCCTTTGGATTA+CGG | 0.356811 | 5_1:+20528246 | Msa0722960:CDS |
GAAGGAGGCTCGTCTTCATT+TGG | 0.360866 | 5_1:-20527766 | None:intergenic |
TCTTAGGGGTTGGAGTTCTT+GGG | 0.370584 | 5_1:-20527795 | None:intergenic |
GGCCTCAGTAGTGGAAATAA+TGG | 0.375297 | 5_1:+20527639 | Msa0722960:CDS |
GGGAAGCTTCTTACCAATGC+TGG | 0.376253 | 5_1:+20527616 | Msa0722960:CDS |
GGGAAAATTAAGCCGTGGAG+GGG | 0.379756 | 5_1:+20526598 | Msa0722960:CDS |
ATATTATGAATATGGCAATT+AGG | 0.393436 | 5_1:+20525991 | Msa0722960:CDS |
GTTCCCTACTTGTCATTGAC+AGG | 0.393882 | 5_1:+20526693 | Msa0722960:CDS |
GGAGTTCTTGGGTCAATAGA+AGG | 0.407998 | 5_1:-20527784 | None:intergenic |
GAAGGTCTCTTTGCATCCAT+TGG | 0.415306 | 5_1:+20527595 | Msa0722960:CDS |
CAGTTGAGGTGTTGTCTAAT+GGG | 0.419303 | 5_1:+20525680 | Msa0722960:CDS |
GGAGCTTCTGATTCTGGATT+CGG | 0.422081 | 5_1:+20525702 | Msa0722960:CDS |
CTGTACCTGCTTTCACCAAA+TGG | 0.422982 | 5_1:+20525119 | Msa0722960:five_prime_UTR |
ATTGCAATGCTTCTCGGTGC+TGG | 0.424767 | 5_1:+20526873 | Msa0722960:CDS |
GGATATTCTGGACACGTTGA+TGG | 0.428902 | 5_1:+20525894 | Msa0722960:CDS |
TGCACCAAATACTATCTCAT+TGG | 0.430196 | 5_1:-20528193 | None:intergenic |
CTTTGAAATTCATAGCTTTG+CGG | 0.434942 | 5_1:-20527676 | None:intergenic |
ACAGGAATTGCAATGCTTCT+CGG | 0.439351 | 5_1:+20526867 | Msa0722960:intron |
GACTTTGATGTGGTTTATGT+TGG | 0.439630 | 5_1:+20526662 | Msa0722960:CDS |
GGAAAATTAAGCCGTGGAGG+GGG | 0.440670 | 5_1:+20526599 | Msa0722960:CDS |
TGGCTTCTTTGGTTATATGC+TGG | 0.442934 | 5_1:+20526893 | Msa0722960:CDS |
TGTTGAATGACAGCGATTGC+TGG | 0.443118 | 5_1:+20525577 | Msa0722960:intron |
CATCAACAGTAATCCCCTTC+GGG | 0.446147 | 5_1:-20525944 | None:intergenic |
TAAAACATGTGTACAATGGA+TGG | 0.452424 | 5_1:+20527929 | Msa0722960:CDS |
TGCGGTAATGAATCTCCAAT+AGG | 0.458535 | 5_1:+20528351 | Msa0722960:three_prime_UTR |
CAGGGGTTACGACAATTGCT+GGG | 0.462604 | 5_1:+20526576 | Msa0722960:intron |
TCATCAACAGTAATCCCCTT+CGG | 0.464047 | 5_1:-20525945 | None:intergenic |
CAGGTTGATGGAATAAAGGT+TGG | 0.464853 | 5_1:-20527699 | None:intergenic |
TTTAAGTGAGAACACCCATT+TGG | 0.465712 | 5_1:-20525134 | None:intergenic |
GGAAGCTTCTTACCAATGCT+GGG | 0.467300 | 5_1:+20527617 | Msa0722960:CDS |
ATTTGGTGCAGTGCAGGAAC+AGG | 0.468187 | 5_1:+20528206 | Msa0722960:CDS |
GACAACACCTCAACTGCATA+AGG | 0.472947 | 5_1:-20525673 | None:intergenic |
CACTACTGAGGCCCCAGCAT+TGG | 0.480624 | 5_1:-20527629 | None:intergenic |
GGTGAAATAGATGAGGATAA+TGG | 0.481601 | 5_1:-20524980 | None:intergenic |
AATGTGGAAACTGTGTTTGA+TGG | 0.487534 | 5_1:+20525631 | Msa0722960:CDS |
GCCTCAGTAGTGGAAATAAT+GGG | 0.496088 | 5_1:+20527640 | Msa0722960:CDS |
ATTGCAAATGTGCAGATAGC+AGG | 0.500557 | 5_1:+20525844 | Msa0722960:intron |
GATAGTATTTGGTGCAGTGC+AGG | 0.501838 | 5_1:+20528200 | Msa0722960:CDS |
AAGGTCTCTTTGCATCCATT+GGG | 0.503206 | 5_1:+20527596 | Msa0722960:CDS |
GTGTTTGATGGAAGCAAGCT+TGG | 0.504687 | 5_1:+20525643 | Msa0722960:CDS |
CTGAAAGGCAAATAAATGCT+TGG | 0.505359 | 5_1:+20527719 | Msa0722960:CDS |
GAAAATTTAGCCTCTTCACT+TGG | 0.506261 | 5_1:-20526635 | None:intergenic |
ATTACAAAACTTTCTTGCAC+AGG | 0.511415 | 5_1:-20527742 | None:intergenic |
GCGGTAATGAATCTCCAATA+GGG | 0.511658 | 5_1:+20528352 | Msa0722960:three_prime_UTR |
TTATAAGATTCGTCTTCTGA+TGG | 0.521940 | 5_1:-20527565 | None:intergenic |
ATGTTCAATTTGTTTACACC+AGG | 0.522047 | 5_1:-20528495 | None:intergenic |
CTGTATATACTCAGTACTTG+TGG | 0.525525 | 5_1:-20528317 | None:intergenic |
TTCCCTACTTGTCATTGACA+GGG | 0.526010 | 5_1:+20526694 | Msa0722960:CDS |
ATTTAAGCATGACCATCAAA+AGG | 0.526506 | 5_1:-20528563 | None:intergenic |
TCGGTGTCTTTAATCATGAA+AGG | 0.531257 | 5_1:-20527826 | None:intergenic |
CAATGCTGGGGCCTCAGTAG+TGG | 0.531836 | 5_1:+20527630 | Msa0722960:CDS |
GGGGAAAATTAAGCCGTGGA+GGG | 0.534296 | 5_1:+20526597 | Msa0722960:CDS |
TGTACCTGCTTTCACCAAAT+GGG | 0.534825 | 5_1:+20525120 | Msa0722960:five_prime_UTR |
AGCAGGCCAAAACTTGTGGC+AGG | 0.539310 | 5_1:+20525861 | Msa0722960:CDS |
CTTTATTCCATCAACCTGAA+AGG | 0.543035 | 5_1:+20527704 | Msa0722960:CDS |
GAATCTTATAAGCAAGAAGA+AGG | 0.549566 | 5_1:+20527577 | Msa0722960:CDS |
CTTCACTTGGTCCATCGACA+TGG | 0.549805 | 5_1:-20526622 | None:intergenic |
GTAGAGCGCTCTATTATGGA+TGG | 0.553125 | 5_1:+20527872 | Msa0722960:CDS |
AACACCCATTTGGTGAAAGC+AGG | 0.559076 | 5_1:-20525124 | None:intergenic |
TGTGCTTATCAATACGAAAG+TGG | 0.563775 | 5_1:+20526758 | Msa0722960:CDS |
TCGTCTTCTGATGGAATCAA+AGG | 0.565286 | 5_1:-20527556 | None:intergenic |
GTTGAATGACAGCGATTGCT+GGG | 0.577934 | 5_1:+20525578 | Msa0722960:intron |
AGTGCAGGAACAGGATGAGA+AGG | 0.580723 | 5_1:+20528215 | Msa0722960:CDS |
ATGGAAAATTAAGAGAGGCT+AGG | 0.581572 | 5_1:+20525913 | Msa0722960:CDS |
CCACTAAAACATGTGTACAA+TGG | 0.582133 | 5_1:+20527925 | Msa0722960:CDS |
CATCTGTATAACGGATGGGT+CGG | 0.590072 | 5_1:+20528006 | Msa0722960:CDS |
AATTGAGCCTTATGCAGTTG+AGG | 0.593409 | 5_1:+20525666 | Msa0722960:CDS |
TCAATGATGAAGTTTGAGAG+TGG | 0.594836 | 5_1:+20525604 | Msa0722960:exon |
GCGCTCTATTATGGATGGGA+AGG | 0.596345 | 5_1:+20527877 | Msa0722960:CDS |
AAAACATCTGTATAACGGAT+GGG | 0.597862 | 5_1:+20528077 | Msa0722960:CDS |
AAAACATGTGTACAATGGAT+GGG | 0.602015 | 5_1:+20527930 | Msa0722960:CDS |
GCTAGGATGAACCACCCGAA+GGG | 0.604085 | 5_1:+20525930 | Msa0722960:CDS |
CTGCAACATAGATATTTCCT+CGG | 0.604716 | 5_1:-20525968 | None:intergenic |
GCGCAGCTGAATCTCCCTGA+TGG | 0.608680 | 5_1:-20526726 | None:intergenic |
GAAGCTTCTTACCAATGCTG+GGG | 0.609183 | 5_1:+20527618 | Msa0722960:CDS |
CATCTGTATAACGGATGGGA+CGG | 0.609816 | 5_1:+20528081 | Msa0722960:CDS |
CCCTACTTGTCATTGACAGG+GGG | 0.613053 | 5_1:+20526696 | Msa0722960:CDS |
GGCTAGGATGAACCACCCGA+AGG | 0.615525 | 5_1:+20525929 | Msa0722960:CDS |
AAAACATCTGTATAACGGAT+GGG | 0.615653 | 5_1:+20528002 | Msa0722960:CDS |
TAATGAATCTCCAATAGGGG+AGG | 0.617455 | 5_1:+20528356 | Msa0722960:three_prime_UTR |
CTTGTGGCAGGATCTGCTGA+AGG | 0.620300 | 5_1:+20525873 | Msa0722960:CDS |
AGATAGCAGGCCAAAACTTG+TGG | 0.620856 | 5_1:+20525857 | Msa0722960:intron |
TCGTAATCAGTATCATTCAT+CGG | 0.624454 | 5_1:+20528134 | Msa0722960:CDS |
AGAGAATCACCGTAATCCAA+AGG | 0.627579 | 5_1:-20528255 | None:intergenic |
TAGAGCGCTCTATTATGGAT+GGG | 0.629076 | 5_1:+20527873 | Msa0722960:CDS |
AGGGGTTACGACAATTGCTG+GGG | 0.629419 | 5_1:+20526577 | Msa0722960:intron |
CGGTAATGAATCTCCAATAG+GGG | 0.631029 | 5_1:+20528353 | Msa0722960:three_prime_UTR |
TGTCGATGGACCAAGTGAAG+AGG | 0.634224 | 5_1:+20526625 | Msa0722960:CDS |
ACCCATTATTTCCACTACTG+AGG | 0.636531 | 5_1:-20527641 | None:intergenic |
GAAATAGATGAGGATAATGG+TGG | 0.640252 | 5_1:-20524977 | None:intergenic |
AATGAATCTCCAATAGGGGA+GGG | 0.640999 | 5_1:+20528357 | Msa0722960:three_prime_UTR |
GGCGGTCTGACAGATTTCAA+CGG | 0.642172 | 5_1:-20527535 | None:intergenic |
TACGAAAGTGGATTTCCACT+CGG | 0.643863 | 5_1:+20526770 | Msa0722960:CDS |
TCCCTACTTGTCATTGACAG+GGG | 0.647961 | 5_1:+20526695 | Msa0722960:CDS |
AAAATGCAACAATTGTGGCA+AGG | 0.653611 | 5_1:+20527850 | Msa0722960:CDS |
CATGTGTACAATGGATGGGA+AGG | 0.653998 | 5_1:+20527934 | Msa0722960:CDS |
CTAGGATGAACCACCCGAAG+GGG | 0.655646 | 5_1:+20525931 | Msa0722960:CDS |
TGTTCAATTTGTTTACACCA+GGG | 0.660647 | 5_1:-20528494 | None:intergenic |
ACTTGCAGGTGAAATAGATG+AGG | 0.661290 | 5_1:-20524987 | None:intergenic |
ATTGGTAAGAAGCTTCCCAA+TGG | 0.665400 | 5_1:-20527611 | None:intergenic |
TCTTCTGATGGAATCAAAGG+CGG | 0.665746 | 5_1:-20527553 | None:intergenic |
CAACAGTAATCCCCTTCGGG+TGG | 0.668291 | 5_1:-20525941 | None:intergenic |
CGTTGATGGAAAATTAAGAG+AGG | 0.669642 | 5_1:+20525908 | Msa0722960:CDS |
TTACTATGAGCAAAGTCGCG+AGG | 0.674883 | 5_1:+20528167 | Msa0722960:CDS |
TCTATGATCATCATAATATG+CGG | 0.675458 | 5_1:+20528277 | Msa0722960:CDS |
GTTCTTGGGTCAATAGAAGG+AGG | 0.680904 | 5_1:-20527781 | None:intergenic |
GGGATTACTGTTGATGACCG+AGG | 0.686913 | 5_1:+20525951 | Msa0722960:CDS |
GTTTGAGAGTGGATACAATG+TGG | 0.694884 | 5_1:+20525615 | Msa0722960:CDS |
AGTTGAGGTGTTGTCTAATG+GGG | 0.701689 | 5_1:+20525681 | Msa0722960:CDS |
GGGGTTACGACAATTGCTGG+GGG | 0.722033 | 5_1:+20526578 | Msa0722960:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGATAAATGAAAAATT+GGG | - | chr5_1:20525035-20525054 | None:intergenic | 10.0% |
!! | AAAATTGATAAATGAAAAAT+TGG | - | chr5_1:20525036-20525055 | None:intergenic | 10.0% |
!!! | TTATAATGATTTCTTTTAAA+TGG | + | chr5_1:20528398-20528417 | Msa0722960:three_prime_UTR | 10.0% |
!! | TATTAAAACTATATTGTATC+TGG | - | chr5_1:20525304-20525323 | None:intergenic | 15.0% |
!!! | AGTTTTAATATATGTAGTTT+TGG | + | chr5_1:20525314-20525333 | Msa0722960:intron | 15.0% |
!!! | CTATTATTTTTGTTTTGTTT+TGG | + | chr5_1:20525535-20525554 | Msa0722960:intron | 15.0% |
!! | TAGAATAGTCATAAATAAAT+CGG | + | chr5_1:20527176-20527195 | Msa0722960:intron | 15.0% |
!!! | TTTTTTCAGACATTGTTAAT+GGG | + | chr5_1:20525083-20525102 | Msa0722960:intron | 20.0% |
!! | CTTCATATTAAAGTTGTATT+TGG | - | chr5_1:20525461-20525480 | None:intergenic | 20.0% |
!!! | TGCAATTTACATGTTATTTT+TGG | - | chr5_1:20525830-20525849 | None:intergenic | 20.0% |
!! | ATATTATGAATATGGCAATT+AGG | + | chr5_1:20525991-20526010 | Msa0722960:CDS | 20.0% |
!! | GTTATAATTTGATTAATCTC+TGG | + | chr5_1:20526041-20526060 | Msa0722960:intron | 20.0% |
!! | ATCCAAAAACAAAATATGAT+TGG | + | chr5_1:20527213-20527232 | Msa0722960:intron | 20.0% |
!!! | TACCAATCATATTTTGTTTT+TGG | - | chr5_1:20527218-20527237 | None:intergenic | 20.0% |
!! | TATACAGTAAAAAATGTTTG+CGG | + | chr5_1:20528333-20528352 | Msa0722960:three_prime_UTR | 20.0% |
!!! | AATGATTTCTTTTAAATGGT+AGG | + | chr5_1:20528402-20528421 | Msa0722960:three_prime_UTR | 20.0% |
!!! | CTTTTTTCAGACATTGTTAA+TGG | + | chr5_1:20525082-20525101 | Msa0722960:intron | 25.0% |
!!! | AGATAGATCTATACCTTTTT+TGG | - | chr5_1:20525167-20525186 | None:intergenic | 25.0% |
! | TGTTGCAGATATTATGAATA+TGG | + | chr5_1:20525983-20526002 | Msa0722960:CDS | 25.0% |
! | TCATTTGTGTGTATATGTAT+AGG | + | chr5_1:20526094-20526113 | Msa0722960:intron | 25.0% |
! | ATTCCTGTAAATGTTTCTTT+AGG | + | chr5_1:20526167-20526186 | Msa0722960:intron | 25.0% |
! | TAAGCATTTGTAAGATTGTT+TGG | + | chr5_1:20526253-20526272 | Msa0722960:intron | 25.0% |
! | AAGCATTTGTAAGATTGTTT+GGG | + | chr5_1:20526254-20526273 | Msa0722960:intron | 25.0% |
!! | GATATCTGTTTTCTCTTTTA+TGG | + | chr5_1:20526529-20526548 | Msa0722960:intron | 25.0% |
!! | TGTTTTCTCTTTTATGGAAA+AGG | + | chr5_1:20526535-20526554 | Msa0722960:intron | 25.0% |
!! | AATTAAGATGTCTGTTTTCA+GGG | + | chr5_1:20526558-20526577 | Msa0722960:intron | 25.0% |
!! | ATTTTCTTATGACTTTGATG+TGG | + | chr5_1:20526652-20526671 | Msa0722960:CDS | 25.0% |
!! | TGAAAGGATATGTTTTCTTA+GGG | - | chr5_1:20527813-20527832 | None:intergenic | 25.0% |
!! | ATGAAAGGATATGTTTTCTT+AGG | - | chr5_1:20527814-20527833 | None:intergenic | 25.0% |
!!! | TTATACAGATGTTTTTGTTG+TGG | - | chr5_1:20527997-20528016 | None:intergenic | 25.0% |
! | CAACAAAAACATCTGTATAA+CGG | + | chr5_1:20527997-20528016 | Msa0722960:CDS | 25.0% |
!!! | TTATACAGATGTTTTTGTTG+TGG | - | chr5_1:20527997-20528016 | None:intergenic | 25.0% |
! | CAACAAAAACATCTGTATAA+CGG | + | chr5_1:20527997-20528016 | Msa0722960:CDS | 25.0% |
! | TCTATGATCATCATAATATG+CGG | + | chr5_1:20528277-20528296 | Msa0722960:CDS | 25.0% |
!! | CAGAAACTTATTTGTTTCTT+CGG | + | chr5_1:20528451-20528470 | Msa0722960:three_prime_UTR | 25.0% |
! | GAACATTGAGCATAATTTAA+AGG | + | chr5_1:20528512-20528531 | Msa0722960:three_prime_UTR | 25.0% |
CTTAAACCAACTACCAAAAA+AGG | + | chr5_1:20525151-20525170 | Msa0722960:five_prime_UTR | 30.0% | |
!!! | TCTATACCTTTTTTGGTAGT+TGG | - | chr5_1:20525160-20525179 | None:intergenic | 30.0% |
!! | GTATAGTTAGTAGAAGTATC+TGG | + | chr5_1:20525262-20525281 | Msa0722960:intron | 30.0% |
ATTAGGAAAATTAGCGATTC+AGG | + | chr5_1:20526008-20526027 | Msa0722960:CDS | 30.0% | |
AACTGTCTTGTAGAAATTCA+AGG | + | chr5_1:20526135-20526154 | Msa0722960:intron | 30.0% | |
TTAGGCCAAACTTATATTCA+AGG | + | chr5_1:20526185-20526204 | Msa0722960:intron | 30.0% | |
TAGGCCAAACTTATATTCAA+GGG | + | chr5_1:20526186-20526205 | Msa0722960:intron | 30.0% | |
CAAACCCTTGAATATAAGTT+TGG | - | chr5_1:20526193-20526212 | None:intergenic | 30.0% | |
! | CTTATATTCAAGGGTTTGTT+TGG | + | chr5_1:20526195-20526214 | Msa0722960:intron | 30.0% |
ATAAGCTGAAAACAGCTTAT+GGG | - | chr5_1:20526300-20526319 | None:intergenic | 30.0% | |
AATAAGCTGAAAACAGCTTA+TGG | - | chr5_1:20526301-20526320 | None:intergenic | 30.0% | |
! | GAATTAAGATGTCTGTTTTC+AGG | + | chr5_1:20526557-20526576 | Msa0722960:intron | 30.0% |
! | ATTAAGATGTCTGTTTTCAG+GGG | + | chr5_1:20526559-20526578 | Msa0722960:intron | 30.0% |
!!! | GATTTGTTTTATTTACCGAG+TGG | - | chr5_1:20526788-20526807 | None:intergenic | 30.0% |
TTGAATGTAACCAAATGTGT+CGG | - | chr5_1:20527081-20527100 | None:intergenic | 30.0% | |
AAATAAATCGGATAGACAGT+TGG | + | chr5_1:20527188-20527207 | Msa0722960:intron | 30.0% | |
TCCAGATTTCTTGAGAAAAA+AGG | + | chr5_1:20527268-20527287 | Msa0722960:intron | 30.0% | |
!!! | TCCTTTTTTCTCAAGAAATC+TGG | - | chr5_1:20527272-20527291 | None:intergenic | 30.0% |
! | AATTCATCTCATGCTTTTGT+AGG | + | chr5_1:20527465-20527484 | Msa0722960:intron | 30.0% |
TTATAAGATTCGTCTTCTGA+TGG | - | chr5_1:20527568-20527587 | None:intergenic | 30.0% | |
GAATCTTATAAGCAAGAAGA+AGG | + | chr5_1:20527577-20527596 | Msa0722960:CDS | 30.0% | |
!! | CTTTGAAATTCATAGCTTTG+CGG | - | chr5_1:20527679-20527698 | None:intergenic | 30.0% |
ATTACAAAACTTTCTTGCAC+AGG | - | chr5_1:20527745-20527764 | None:intergenic | 30.0% | |
! | GAAAGGATATGTTTTCTTAG+GGG | - | chr5_1:20527812-20527831 | None:intergenic | 30.0% |
!!! | CCACAATTGTTGCATTTTTT+CGG | - | chr5_1:20527848-20527867 | None:intergenic | 30.0% |
TAAAACATGTGTACAATGGA+TGG | + | chr5_1:20527929-20527948 | Msa0722960:CDS | 30.0% | |
AAAACATGTGTACAATGGAT+GGG | + | chr5_1:20527930-20527949 | Msa0722960:CDS | 30.0% | |
! | AAAAACATCTGTATAACGGA+TGG | + | chr5_1:20528001-20528020 | Msa0722960:CDS | 30.0% |
!! | AAAACATCTGTATAACGGAT+GGG | + | chr5_1:20528002-20528021 | Msa0722960:CDS | 30.0% |
! | AAAAACATCTGTATAACGGA+TGG | + | chr5_1:20528001-20528020 | Msa0722960:CDS | 30.0% |
!! | AAAACATCTGTATAACGGAT+GGG | + | chr5_1:20528002-20528021 | Msa0722960:CDS | 30.0% |
TCGTAATCAGTATCATTCAT+CGG | + | chr5_1:20528134-20528153 | Msa0722960:CDS | 30.0% | |
GAAACCAATGAGATAGTATT+TGG | + | chr5_1:20528189-20528208 | Msa0722960:CDS | 30.0% | |
! | TGTTCAATTTGTTTACACCA+GGG | - | chr5_1:20528497-20528516 | None:intergenic | 30.0% |
! | ATGTTCAATTTGTTTACACC+AGG | - | chr5_1:20528498-20528517 | None:intergenic | 30.0% |
! | AAGGCAAGATCAAGAAATTT+TGG | + | chr5_1:20528531-20528550 | Msa0722960:three_prime_UTR | 30.0% |
ATTTAAGCATGACCATCAAA+AGG | - | chr5_1:20528566-20528585 | None:intergenic | 30.0% | |
! | GAAATAGATGAGGATAATGG+TGG | - | chr5_1:20524980-20524999 | None:intergenic | 35.0% |
GGTGAAATAGATGAGGATAA+TGG | - | chr5_1:20524983-20525002 | None:intergenic | 35.0% | |
TTTAAGTGAGAACACCCATT+TGG | - | chr5_1:20525137-20525156 | None:intergenic | 35.0% | |
TTTAGTATCAATCTCGTGTC+CGG | - | chr5_1:20525224-20525243 | None:intergenic | 35.0% | |
!!! | GTTTTGTTTTGGTTGTGATG+TGG | + | chr5_1:20525546-20525565 | Msa0722960:intron | 35.0% |
!! | TTTTGGTTGTGATGTGGAAT+TGG | + | chr5_1:20525552-20525571 | Msa0722960:intron | 35.0% |
TCAATGATGAAGTTTGAGAG+TGG | + | chr5_1:20525604-20525623 | Msa0722960:exon | 35.0% | |
AATGTGGAAACTGTGTTTGA+TGG | + | chr5_1:20525631-20525650 | Msa0722960:CDS | 35.0% | |
! | CGTTGATGGAAAATTAAGAG+AGG | + | chr5_1:20525908-20525927 | Msa0722960:CDS | 35.0% |
ATGGAAAATTAAGAGAGGCT+AGG | + | chr5_1:20525913-20525932 | Msa0722960:CDS | 35.0% | |
CTGCAACATAGATATTTCCT+CGG | - | chr5_1:20525971-20525990 | None:intergenic | 35.0% | |
GAAAAAAGAAACGTCTCTAG+AGG | - | chr5_1:20526076-20526095 | None:intergenic | 35.0% | |
!! | AGACAGTTGTGTTCTAGTTT+AGG | - | chr5_1:20526123-20526142 | None:intergenic | 35.0% |
TGGCCTAAAGAAACATTTAC+AGG | - | chr5_1:20526173-20526192 | None:intergenic | 35.0% | |
CTTATTTCCATAAGCTTTCC+AGG | + | chr5_1:20526315-20526334 | Msa0722960:intron | 35.0% | |
AAGTTATCCTGGAAAGCTTA+TGG | - | chr5_1:20526325-20526344 | None:intergenic | 35.0% | |
!! | GCTGTTTTCATAAGTTATCC+TGG | - | chr5_1:20526336-20526355 | None:intergenic | 35.0% |
GAAAATTTAGCCTCTTCACT+TGG | - | chr5_1:20526638-20526657 | None:intergenic | 35.0% | |
GACTTTGATGTGGTTTATGT+TGG | + | chr5_1:20526662-20526681 | Msa0722960:CDS | 35.0% | |
TGTGCTTATCAATACGAAAG+TGG | + | chr5_1:20526758-20526777 | Msa0722960:CDS | 35.0% | |
TTGCAATTCCTGTAGATTGA+AGG | - | chr5_1:20526860-20526879 | None:intergenic | 35.0% | |
!! | ATGCTAGCTTTAGAGAACAA+AGG | - | chr5_1:20527392-20527411 | None:intergenic | 35.0% |
!! | TAGTGGAAATAATGGGTTTC+AGG | + | chr5_1:20527647-20527666 | Msa0722960:CDS | 35.0% |
!! | CTTTCAGGTTGATGGAATAA+AGG | - | chr5_1:20527706-20527725 | None:intergenic | 35.0% |
CTTTATTCCATCAACCTGAA+AGG | + | chr5_1:20527704-20527723 | Msa0722960:CDS | 35.0% | |
!! | TTATTTGCCTTTCAGGTTGA+TGG | - | chr5_1:20527714-20527733 | None:intergenic | 35.0% |
CAAGCATTTATTTGCCTTTC+AGG | - | chr5_1:20527721-20527740 | None:intergenic | 35.0% | |
CTGAAAGGCAAATAAATGCT+TGG | + | chr5_1:20527719-20527738 | Msa0722960:CDS | 35.0% | |
! | TCGGTGTCTTTAATCATGAA+AGG | - | chr5_1:20527829-20527848 | None:intergenic | 35.0% |
CCGAAAAAATGCAACAATTG+TGG | + | chr5_1:20527845-20527864 | Msa0722960:CDS | 35.0% | |
AAAATGCAACAATTGTGGCA+AGG | + | chr5_1:20527850-20527869 | Msa0722960:CDS | 35.0% | |
!! | CCATTGTACACATGTTTTAG+TGG | - | chr5_1:20527928-20527947 | None:intergenic | 35.0% |
CCACTAAAACATGTGTACAA+TGG | + | chr5_1:20527925-20527944 | Msa0722960:CDS | 35.0% | |
TGCACCAAATACTATCTCAT+TGG | - | chr5_1:20528196-20528215 | None:intergenic | 35.0% | |
GTTATCAAGCCTTTGGATTA+CGG | + | chr5_1:20528246-20528265 | Msa0722960:CDS | 35.0% | |
CTGTATATACTCAGTACTTG+TGG | - | chr5_1:20528320-20528339 | None:intergenic | 35.0% | |
ACTTGCAGGTGAAATAGATG+AGG | - | chr5_1:20524990-20525009 | None:intergenic | 40.0% | |
TCAGTGAATGACTTACTTGC+AGG | - | chr5_1:20525004-20525023 | None:intergenic | 40.0% | |
TGTACCTGCTTTCACCAAAT+GGG | + | chr5_1:20525120-20525139 | Msa0722960:five_prime_UTR | 40.0% | |
TCTACGTGTCAATGTAGTCT+CGG | - | chr5_1:20525370-20525389 | None:intergenic | 40.0% | |
CACGTGTATTAGTGTCTTGT+TGG | + | chr5_1:20525432-20525451 | Msa0722960:intron | 40.0% | |
GTTTGAGAGTGGATACAATG+TGG | + | chr5_1:20525615-20525634 | Msa0722960:CDS | 40.0% | |
! | AATTGAGCCTTATGCAGTTG+AGG | + | chr5_1:20525666-20525685 | Msa0722960:CDS | 40.0% |
!! | CAGTTGAGGTGTTGTCTAAT+GGG | + | chr5_1:20525680-20525699 | Msa0722960:CDS | 40.0% |
!! | AGTTGAGGTGTTGTCTAATG+GGG | + | chr5_1:20525681-20525700 | Msa0722960:CDS | 40.0% |
ATAAGGTGAAGTTACCGCAT+TGG | - | chr5_1:20525779-20525798 | None:intergenic | 40.0% | |
GAGCAATGAGTGAGATCATA+AGG | - | chr5_1:20525796-20525815 | None:intergenic | 40.0% | |
!!! | GTTATTTTTGGCCTGCTAGT+AGG | - | chr5_1:20525818-20525837 | None:intergenic | 40.0% |
ATTGCAAATGTGCAGATAGC+AGG | + | chr5_1:20525844-20525863 | Msa0722960:intron | 40.0% | |
TCATCAACAGTAATCCCCTT+CGG | - | chr5_1:20525948-20525967 | None:intergenic | 40.0% | |
TCTACTTTGAACAGCAGAGT+TGG | + | chr5_1:20526482-20526501 | Msa0722960:intron | 40.0% | |
TTCCCTACTTGTCATTGACA+GGG | + | chr5_1:20526694-20526713 | Msa0722960:CDS | 40.0% | |
! | TACGAAAGTGGATTTCCACT+CGG | + | chr5_1:20526770-20526789 | Msa0722960:CDS | 40.0% |
AGTGTATGCCTTCAATCTAC+AGG | + | chr5_1:20526849-20526868 | Msa0722960:intron | 40.0% | |
ACAGGAATTGCAATGCTTCT+CGG | + | chr5_1:20526867-20526886 | Msa0722960:intron | 40.0% | |
TGGCTTCTTTGGTTATATGC+TGG | + | chr5_1:20526893-20526912 | Msa0722960:CDS | 40.0% | |
AAGTACAATTGTCGCATCTC+AGG | + | chr5_1:20526935-20526954 | Msa0722960:intron | 40.0% | |
TATAACACTGACACCTCAGA+TGG | + | chr5_1:20527032-20527051 | Msa0722960:intron | 40.0% | |
!! | TATTCTATGAAGCACCGACA+CGG | - | chr5_1:20527163-20527182 | None:intergenic | 40.0% |
! | AACGGCTTTTGGTAAAGACT+CGG | - | chr5_1:20527520-20527539 | None:intergenic | 40.0% |
! | TGACAGATTTCAACGGCTTT+TGG | - | chr5_1:20527531-20527550 | None:intergenic | 40.0% |
TCTTCTGATGGAATCAAAGG+CGG | - | chr5_1:20527556-20527575 | None:intergenic | 40.0% | |
TCGTCTTCTGATGGAATCAA+AGG | - | chr5_1:20527559-20527578 | None:intergenic | 40.0% | |
AAGGTCTCTTTGCATCCATT+GGG | + | chr5_1:20527596-20527615 | Msa0722960:CDS | 40.0% | |
ATTGGTAAGAAGCTTCCCAA+TGG | - | chr5_1:20527614-20527633 | None:intergenic | 40.0% | |
! | GCCTCAGTAGTGGAAATAAT+GGG | + | chr5_1:20527640-20527659 | Msa0722960:CDS | 40.0% |
ACCCATTATTTCCACTACTG+AGG | - | chr5_1:20527644-20527663 | None:intergenic | 40.0% | |
!! | CAGGTTGATGGAATAAAGGT+TGG | - | chr5_1:20527702-20527721 | None:intergenic | 40.0% |
! | GGATATGTTTTCTTAGGGGT+TGG | - | chr5_1:20527808-20527827 | None:intergenic | 40.0% |
! | TAGAGCGCTCTATTATGGAT+GGG | + | chr5_1:20527873-20527892 | Msa0722960:CDS | 40.0% |
! | TGCTGTTGTTGTTGTTGTTG+CGG | - | chr5_1:20528048-20528067 | None:intergenic | 40.0% |
GTCTGTAGTTATCAAGCCTT+TGG | + | chr5_1:20528239-20528258 | Msa0722960:CDS | 40.0% | |
AGAGAATCACCGTAATCCAA+AGG | - | chr5_1:20528258-20528277 | None:intergenic | 40.0% | |
TGCGGTAATGAATCTCCAAT+AGG | + | chr5_1:20528351-20528370 | Msa0722960:three_prime_UTR | 40.0% | |
GCGGTAATGAATCTCCAATA+GGG | + | chr5_1:20528352-20528371 | Msa0722960:three_prime_UTR | 40.0% | |
CGGTAATGAATCTCCAATAG+GGG | + | chr5_1:20528353-20528372 | Msa0722960:three_prime_UTR | 40.0% | |
TAATGAATCTCCAATAGGGG+AGG | + | chr5_1:20528356-20528375 | Msa0722960:three_prime_UTR | 40.0% | |
AATGAATCTCCAATAGGGGA+GGG | + | chr5_1:20528357-20528376 | Msa0722960:three_prime_UTR | 40.0% | |
! | TGGTACGCTATTCCTTTTGA+TGG | + | chr5_1:20528551-20528570 | Msa0722960:three_prime_UTR | 40.0% |
CTGTACCTGCTTTCACCAAA+TGG | + | chr5_1:20525119-20525138 | Msa0722960:five_prime_UTR | 45.0% | |
! | AACACCCATTTGGTGAAAGC+AGG | - | chr5_1:20525127-20525146 | None:intergenic | 45.0% |
CTACGTGTCAATGTAGTCTC+GGG | - | chr5_1:20525369-20525388 | None:intergenic | 45.0% | |
TGTTGAATGACAGCGATTGC+TGG | + | chr5_1:20525577-20525596 | Msa0722960:intron | 45.0% | |
GTTGAATGACAGCGATTGCT+GGG | + | chr5_1:20525578-20525597 | Msa0722960:intron | 45.0% | |
GTGTTTGATGGAAGCAAGCT+TGG | + | chr5_1:20525643-20525662 | Msa0722960:CDS | 45.0% | |
GACAACACCTCAACTGCATA+AGG | - | chr5_1:20525676-20525695 | None:intergenic | 45.0% | |
!! | GCAGTTGAGGTGTTGTCTAA+TGG | + | chr5_1:20525679-20525698 | Msa0722960:CDS | 45.0% |
TAATGGGGAGCTTCTGATTC+TGG | + | chr5_1:20525696-20525715 | Msa0722960:CDS | 45.0% | |
GGAGCTTCTGATTCTGGATT+CGG | + | chr5_1:20525702-20525721 | Msa0722960:CDS | 45.0% | |
GTTGTGTAAGTGTGCCAATG+CGG | + | chr5_1:20525762-20525781 | Msa0722960:intron | 45.0% | |
AGATAGCAGGCCAAAACTTG+TGG | + | chr5_1:20525857-20525876 | Msa0722960:intron | 45.0% | |
GGATCTGCTGAAGGATATTC+TGG | + | chr5_1:20525882-20525901 | Msa0722960:CDS | 45.0% | |
GGATATTCTGGACACGTTGA+TGG | + | chr5_1:20525894-20525913 | Msa0722960:CDS | 45.0% | |
CATCAACAGTAATCCCCTTC+GGG | - | chr5_1:20525947-20525966 | None:intergenic | 45.0% | |
GTTCCCTACTTGTCATTGAC+AGG | + | chr5_1:20526693-20526712 | Msa0722960:CDS | 45.0% | |
TCCCTACTTGTCATTGACAG+GGG | + | chr5_1:20526695-20526714 | Msa0722960:CDS | 45.0% | |
!! | TGAGTGCTTGTCTAGTTCTC+TGG | + | chr5_1:20526970-20526989 | Msa0722960:intron | 45.0% |
!! | CAAATGTGTCGGTGTCGTAT+CGG | - | chr5_1:20527070-20527089 | None:intergenic | 45.0% |
!! | ATTCTATGAAGCACCGACAC+GGG | - | chr5_1:20527162-20527181 | None:intergenic | 45.0% |
CTCATTGTAGCTGCATGACA+TGG | + | chr5_1:20527308-20527327 | Msa0722960:intron | 45.0% | |
GAAGGTCTCTTTGCATCCAT+TGG | + | chr5_1:20527595-20527614 | Msa0722960:CDS | 45.0% | |
GGAAGCTTCTTACCAATGCT+GGG | + | chr5_1:20527617-20527636 | Msa0722960:CDS | 45.0% | |
GAAGCTTCTTACCAATGCTG+GGG | + | chr5_1:20527618-20527637 | Msa0722960:CDS | 45.0% | |
! | GGCCTCAGTAGTGGAAATAA+TGG | + | chr5_1:20527639-20527658 | Msa0722960:CDS | 45.0% |
GTTCTTGGGTCAATAGAAGG+AGG | - | chr5_1:20527784-20527803 | None:intergenic | 45.0% | |
GGAGTTCTTGGGTCAATAGA+AGG | - | chr5_1:20527787-20527806 | None:intergenic | 45.0% | |
TCTTAGGGGTTGGAGTTCTT+GGG | - | chr5_1:20527798-20527817 | None:intergenic | 45.0% | |
TTCTTAGGGGTTGGAGTTCT+TGG | - | chr5_1:20527799-20527818 | None:intergenic | 45.0% | |
! | CAAGGTAGAGCGCTCTATTA+TGG | + | chr5_1:20527868-20527887 | Msa0722960:CDS | 45.0% |
! | GTAGAGCGCTCTATTATGGA+TGG | + | chr5_1:20527872-20527891 | Msa0722960:CDS | 45.0% |
CATGTGTACAATGGATGGGA+AGG | + | chr5_1:20527934-20527953 | Msa0722960:CDS | 45.0% | |
!! | CATCTGTATAACGGATGGGT+CGG | + | chr5_1:20528006-20528025 | Msa0722960:CDS | 45.0% |
!! | CATCTGTATAACGGATGGGA+CGG | + | chr5_1:20528081-20528100 | Msa0722960:CDS | 45.0% |
TTACTATGAGCAAAGTCGCG+AGG | + | chr5_1:20528167-20528186 | Msa0722960:CDS | 45.0% | |
!! | GATAGTATTTGGTGCAGTGC+AGG | + | chr5_1:20528200-20528219 | Msa0722960:CDS | 45.0% |
TTGATTTCACCCTCCCCTAT+TGG | - | chr5_1:20528369-20528388 | None:intergenic | 45.0% | |
!! | CAAAGCACTGACACAGACAC+CGG | + | chr5_1:20525202-20525221 | Msa0722960:intron | 50.0% |
CACTCATTGCTCCTACTAGC+AGG | + | chr5_1:20525804-20525823 | Msa0722960:intron | 50.0% | |
! | GCAGATCCTGCCACAAGTTT+TGG | - | chr5_1:20525870-20525889 | None:intergenic | 50.0% |
!! | GGGATTACTGTTGATGACCG+AGG | + | chr5_1:20525951-20525970 | Msa0722960:CDS | 50.0% |
TCAGGGGTTACGACAATTGC+TGG | + | chr5_1:20526575-20526594 | Msa0722960:intron | 50.0% | |
CAGGGGTTACGACAATTGCT+GGG | + | chr5_1:20526576-20526595 | Msa0722960:intron | 50.0% | |
AGGGGTTACGACAATTGCTG+GGG | + | chr5_1:20526577-20526596 | Msa0722960:intron | 50.0% | |
GGGGAAAATTAAGCCGTGGA+GGG | + | chr5_1:20526597-20526616 | Msa0722960:CDS | 50.0% | |
GGGAAAATTAAGCCGTGGAG+GGG | + | chr5_1:20526598-20526617 | Msa0722960:CDS | 50.0% | |
GGAAAATTAAGCCGTGGAGG+GGG | + | chr5_1:20526599-20526618 | Msa0722960:CDS | 50.0% | |
CTTCACTTGGTCCATCGACA+TGG | - | chr5_1:20526625-20526644 | None:intergenic | 50.0% | |
TGTCGATGGACCAAGTGAAG+AGG | + | chr5_1:20526625-20526644 | Msa0722960:CDS | 50.0% | |
CCCCCTGTCAATGACAAGTA+GGG | - | chr5_1:20526699-20526718 | None:intergenic | 50.0% | |
CCCTACTTGTCATTGACAGG+GGG | + | chr5_1:20526696-20526715 | Msa0722960:CDS | 50.0% | |
TCCCCCTGTCAATGACAAGT+AGG | - | chr5_1:20526700-20526719 | None:intergenic | 50.0% | |
! | ATTGCAATGCTTCTCGGTGC+TGG | + | chr5_1:20526873-20526892 | Msa0722960:CDS | 50.0% |
CGATACGACACCGACACATT+TGG | + | chr5_1:20527068-20527087 | Msa0722960:intron | 50.0% | |
GGCGGTCTGACAGATTTCAA+CGG | - | chr5_1:20527538-20527557 | None:intergenic | 50.0% | |
GGGAAGCTTCTTACCAATGC+TGG | + | chr5_1:20527616-20527635 | Msa0722960:CDS | 50.0% | |
GAAGGAGGCTCGTCTTCATT+TGG | - | chr5_1:20527769-20527788 | None:intergenic | 50.0% | |
GCGCTCTATTATGGATGGGA+AGG | + | chr5_1:20527877-20527896 | Msa0722960:CDS | 50.0% | |
!! | ATTTGGTGCAGTGCAGGAAC+AGG | + | chr5_1:20528206-20528225 | Msa0722960:CDS | 50.0% |
AGTGCAGGAACAGGATGAGA+AGG | + | chr5_1:20528215-20528234 | Msa0722960:CDS | 50.0% | |
! | TGCCAAATTTTCAGTCGCCC+TGG | + | chr5_1:20528477-20528496 | Msa0722960:three_prime_UTR | 50.0% |
CACCAGGGCGACTGAAAATT+TGG | - | chr5_1:20528482-20528501 | None:intergenic | 50.0% | |
AGCAGGCCAAAACTTGTGGC+AGG | + | chr5_1:20525861-20525880 | Msa0722960:CDS | 55.0% | |
CTTGTGGCAGGATCTGCTGA+AGG | + | chr5_1:20525873-20525892 | Msa0722960:CDS | 55.0% | |
GCTAGGATGAACCACCCGAA+GGG | + | chr5_1:20525930-20525949 | Msa0722960:CDS | 55.0% | |
CTAGGATGAACCACCCGAAG+GGG | + | chr5_1:20525931-20525950 | Msa0722960:CDS | 55.0% | |
CAACAGTAATCCCCTTCGGG+TGG | - | chr5_1:20525944-20525963 | None:intergenic | 55.0% | |
GGGGTTACGACAATTGCTGG+GGG | + | chr5_1:20526578-20526597 | Msa0722960:intron | 55.0% | |
GCTGGGGGAAAATTAAGCCG+TGG | + | chr5_1:20526593-20526612 | Msa0722960:CDS | 55.0% | |
GGGGGAAAATTAAGCCGTGG+AGG | + | chr5_1:20526596-20526615 | Msa0722960:CDS | 55.0% | |
ACAGGGGGAATCAAGCCATC+AGG | + | chr5_1:20526711-20526730 | Msa0722960:CDS | 55.0% | |
CAGGGGGAATCAAGCCATCA+GGG | + | chr5_1:20526712-20526731 | Msa0722960:CDS | 55.0% | |
!! | CTTCTCGGTGCTGGCTTCTT+TGG | + | chr5_1:20526882-20526901 | Msa0722960:CDS | 55.0% |
TCCAGTGTTTGTGCCCGTGT+CGG | + | chr5_1:20527146-20527165 | Msa0722960:intron | 55.0% | |
GGCTAGGATGAACCACCCGA+AGG | + | chr5_1:20525929-20525948 | Msa0722960:CDS | 60.0% | |
GCGCAGCTGAATCTCCCTGA+TGG | - | chr5_1:20526729-20526748 | None:intergenic | 60.0% | |
GACACCTCAGATGGCGTGTC+TGG | + | chr5_1:20527041-20527060 | Msa0722960:intron | 60.0% | |
GACACCAGACACGCCATCTG+AGG | - | chr5_1:20527048-20527067 | None:intergenic | 60.0% | |
ACCGACACGGGCACAAACAC+TGG | - | chr5_1:20527150-20527169 | None:intergenic | 60.0% | |
CACTACTGAGGCCCCAGCAT+TGG | - | chr5_1:20527632-20527651 | None:intergenic | 60.0% | |
CAATGCTGGGGCCTCAGTAG+TGG | + | chr5_1:20527630-20527649 | Msa0722960:CDS | 60.0% | |
CATCGACATGGCCCCCTCCA+CGG | - | chr5_1:20526613-20526632 | None:intergenic | 65.0% | |
CGTGGAGGGGGCCATGTCGA+TGG | + | chr5_1:20526611-20526630 | Msa0722960:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 20524894 | 20528586 | 20524894 | ID=Msa0722960;Name=Msa0722960 |
chr5_1 | mRNA | 20524894 | 20528586 | 20524894 | ID=Msa0722960-mRNA-1;Parent=Msa0722960;Name=Msa0722960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=212|0.83|0.85|1|1|1|7|257|486 |
chr5_1 | exon | 20524894 | 20525007 | 20524894 | ID=Msa0722960-mRNA-1:exon:7809;Parent=Msa0722960-mRNA-1 |
chr5_1 | exon | 20525092 | 20525172 | 20525092 | ID=Msa0722960-mRNA-1:exon:7810;Parent=Msa0722960-mRNA-1 |
chr5_1 | exon | 20525590 | 20525766 | 20525590 | ID=Msa0722960-mRNA-1:exon:7811;Parent=Msa0722960-mRNA-1 |
chr5_1 | exon | 20525859 | 20526029 | 20525859 | ID=Msa0722960-mRNA-1:exon:7812;Parent=Msa0722960-mRNA-1 |
chr5_1 | exon | 20526579 | 20526791 | 20526579 | ID=Msa0722960-mRNA-1:exon:7813;Parent=Msa0722960-mRNA-1 |
chr5_1 | exon | 20526871 | 20526944 | 20526871 | ID=Msa0722960-mRNA-1:exon:7814;Parent=Msa0722960-mRNA-1 |
chr5_1 | exon | 20527487 | 20528586 | 20527487 | ID=Msa0722960-mRNA-1:exon:7815;Parent=Msa0722960-mRNA-1 |
chr5_1 | five_prime_UTR | 20524894 | 20525007 | 20524894 | ID=Msa0722960-mRNA-1:five_prime_utr;Parent=Msa0722960-mRNA-1 |
chr5_1 | five_prime_UTR | 20525092 | 20525172 | 20525092 | ID=Msa0722960-mRNA-1:five_prime_utr;Parent=Msa0722960-mRNA-1 |
chr5_1 | five_prime_UTR | 20525590 | 20525606 | 20525590 | ID=Msa0722960-mRNA-1:five_prime_utr;Parent=Msa0722960-mRNA-1 |
chr5_1 | CDS | 20525607 | 20525766 | 20525607 | ID=Msa0722960-mRNA-1:cds;Parent=Msa0722960-mRNA-1 |
chr5_1 | CDS | 20525859 | 20526029 | 20525859 | ID=Msa0722960-mRNA-1:cds;Parent=Msa0722960-mRNA-1 |
chr5_1 | CDS | 20526579 | 20526791 | 20526579 | ID=Msa0722960-mRNA-1:cds;Parent=Msa0722960-mRNA-1 |
chr5_1 | CDS | 20526871 | 20526944 | 20526871 | ID=Msa0722960-mRNA-1:cds;Parent=Msa0722960-mRNA-1 |
chr5_1 | CDS | 20527487 | 20528329 | 20527487 | ID=Msa0722960-mRNA-1:cds;Parent=Msa0722960-mRNA-1 |
chr5_1 | three_prime_UTR | 20528330 | 20528586 | 20528330 | ID=Msa0722960-mRNA-1:three_prime_utr;Parent=Msa0722960-mRNA-1 |
Gene Sequence |
Protein sequence |