Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041720 | I3SPL3 | 92.780 | 277 | 4 | 3 | 1 | 277 | 1 | 261 | 5.64e-176 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0041720 | 0.801128 | 1.041808e-48 | -8.615850e-47 |
| Msa0007440 | Msa0041720 | 0.802373 | 5.786843e-49 | -8.615850e-47 |
| Msa0011960 | Msa0041720 | 0.803054 | 4.185885e-49 | -8.615850e-47 |
| Msa0012080 | Msa0041720 | 0.822660 | 2.103735e-53 | -8.615850e-47 |
| Msa0024710 | Msa0041720 | 0.835724 | 1.420777e-56 | -8.615850e-47 |
| Msa0029240 | Msa0041720 | 0.812913 | 3.337892e-51 | -8.615850e-47 |
| Msa0035120 | Msa0041720 | 0.804596 | 2.001888e-49 | -8.615850e-47 |
| Msa0040690 | Msa0041720 | 0.807894 | 4.043892e-50 | -8.615850e-47 |
| Msa0041720 | Msa0046760 | 0.804948 | 1.690342e-49 | -8.615850e-47 |
| Msa0041720 | Msa0054440 | 0.819276 | 1.264393e-52 | -8.615850e-47 |
| Msa0041720 | Msa0054480 | 0.825440 | 4.682456e-54 | -8.615850e-47 |
| Msa0041720 | Msa0056450 | 0.809550 | 1.789913e-50 | -8.615850e-47 |
| Msa0041720 | Msa0070700 | 0.803722 | 3.043853e-49 | -8.615850e-47 |
| Msa0041720 | Msa0078900 | 0.803771 | 2.972819e-49 | -8.615850e-47 |
| Msa0041720 | Msa0091250 | -0.812208 | 4.759492e-51 | -8.615850e-47 |
| Msa0041720 | Msa0097590 | 0.809476 | 1.856631e-50 | -8.615850e-47 |
| Msa0041720 | Msa0097610 | 0.809550 | 1.790150e-50 | -8.615850e-47 |
| Msa0041720 | Msa0103250 | 0.805082 | 1.584699e-49 | -8.615850e-47 |
| Msa0041720 | Msa0104700 | 0.837112 | 6.300394e-57 | -8.615850e-47 |
| Msa0041720 | Msa0105620 | 0.829140 | 6.080351e-55 | -8.615850e-47 |
| Msa0041720 | Msa0112770 | 0.810323 | 1.220166e-50 | -8.615850e-47 |
| Msa0041720 | Msa0116770 | 0.809397 | 1.931156e-50 | -8.615850e-47 |
| Msa0041720 | Msa0125650 | 0.813920 | 2.004448e-51 | -8.615850e-47 |
| Msa0041720 | Msa0127100 | 0.803868 | 2.839113e-49 | -8.615850e-47 |
| Msa0041720 | Msa0136070 | 0.843704 | 1.189272e-58 | -8.615850e-47 |
| Msa0041720 | Msa0136100 | 0.849859 | 2.467125e-60 | -8.615850e-47 |
| Msa0041720 | Msa0140500 | -0.819523 | 1.110733e-52 | -8.615850e-47 |
| Msa0041720 | Msa0150990 | 0.825652 | 4.171967e-54 | -8.615850e-47 |
| Msa0041720 | Msa0152140 | 0.815423 | 9.316368e-52 | -8.615850e-47 |
| Msa0041720 | Msa0165210 | 0.809067 | 2.272760e-50 | -8.615850e-47 |
| Msa0041720 | Msa0165220 | 0.804953 | 1.686248e-49 | -8.615850e-47 |
| Msa0041720 | Msa0166560 | 0.808105 | 3.647127e-50 | -8.615850e-47 |
| Msa0041720 | Msa0167820 | 0.802551 | 5.316001e-49 | -8.615850e-47 |
| Msa0041720 | Msa0171540 | 0.819760 | 9.807865e-53 | -8.615850e-47 |
| Msa0041720 | Msa0178510 | 0.800112 | 1.679108e-48 | -8.615850e-47 |
| Msa0041720 | Msa0187030 | 0.800051 | 1.727418e-48 | -8.615850e-47 |
| Msa0041720 | Msa0187120 | 0.818194 | 2.225720e-52 | -8.615850e-47 |
| Msa0041720 | Msa0188150 | 0.817679 | 2.909247e-52 | -8.615850e-47 |
| Msa0041720 | Msa0188350 | 0.802722 | 4.901489e-49 | -8.615850e-47 |
| Msa0041720 | Msa0189300 | 0.827333 | 1.657501e-54 | -8.615850e-47 |
| Msa0041720 | Msa0197660 | 0.821476 | 3.956473e-53 | -8.615850e-47 |
| Msa0041720 | Msa0205010 | 0.812692 | 3.731486e-51 | -8.615850e-47 |
| Msa0041720 | Msa0217700 | 0.821298 | 4.349812e-53 | -8.615850e-47 |
| Msa0041720 | Msa0219430 | 0.801402 | 9.159873e-49 | -8.615850e-47 |
| Msa0041720 | Msa0229170 | 0.813173 | 2.927053e-51 | -8.615850e-47 |
| Msa0041720 | Msa0231660 | 0.822793 | 1.958330e-53 | -8.615850e-47 |
| Msa0041720 | Msa0239800 | 0.824581 | 7.467684e-54 | -8.615850e-47 |
| Msa0041720 | Msa0240900 | 0.802669 | 5.028356e-49 | -8.615850e-47 |
| Msa0041720 | Msa0241470 | 0.821585 | 3.733253e-53 | -8.615850e-47 |
| Msa0041720 | Msa0259210 | 0.814254 | 1.691742e-51 | -8.615850e-47 |
| Msa0041720 | Msa0259220 | 0.818498 | 1.899799e-52 | -8.615850e-47 |
| Msa0041720 | Msa0267780 | 0.800137 | 1.659529e-48 | -8.615850e-47 |
| Msa0041720 | Msa0268090 | 0.801548 | 8.549914e-49 | -8.615850e-47 |
| Msa0041720 | Msa0271530 | 0.811616 | 6.404008e-51 | -8.615850e-47 |
| Msa0041720 | Msa0277820 | 0.804725 | 1.882062e-49 | -8.615850e-47 |
| Msa0041720 | Msa0279700 | 0.800860 | 1.182116e-48 | -8.615850e-47 |
| Msa0041720 | Msa0296820 | 0.820047 | 8.431180e-53 | -8.615850e-47 |
| Msa0041720 | Msa0309750 | 0.806244 | 9.036480e-50 | -8.615850e-47 |
| Msa0041720 | Msa0316900 | 0.807535 | 4.820158e-50 | -8.615850e-47 |
| Msa0041720 | Msa0317510 | 0.816291 | 5.963777e-52 | -8.615850e-47 |
| Msa0041720 | Msa0317970 | 0.835624 | 1.505624e-56 | -8.615850e-47 |
| Msa0041720 | Msa0330340 | 0.800873 | 1.175141e-48 | -8.615850e-47 |
| Msa0041720 | Msa0336310 | 0.811728 | 6.053783e-51 | -8.615850e-47 |
| Msa0041720 | Msa0336320 | 0.819009 | 1.453967e-52 | -8.615850e-47 |
| Msa0041720 | Msa0340450 | 0.812134 | 4.940164e-51 | -8.615850e-47 |
| Msa0041720 | Msa0357900 | 0.802048 | 6.750098e-49 | -8.615850e-47 |
| Msa0041720 | Msa0358890 | 0.824112 | 9.626274e-54 | -8.615850e-47 |
| Msa0041720 | Msa0360210 | 0.802077 | 6.658156e-49 | -8.615850e-47 |
| Msa0041720 | Msa0367870 | 0.803816 | 2.910338e-49 | -8.615850e-47 |
| Msa0041720 | Msa0381610 | -0.822965 | 1.785969e-53 | -8.615850e-47 |
| Msa0041720 | Msa0382270 | 0.825814 | 3.817684e-54 | -8.615850e-47 |
| Msa0041720 | Msa0387370 | 0.805752 | 1.146842e-49 | -8.615850e-47 |
| Msa0041720 | Msa0406770 | 0.800260 | 1.566300e-48 | -8.615850e-47 |
| Msa0041720 | Msa0428050 | 0.801660 | 8.108171e-49 | -8.615850e-47 |
| Msa0041720 | Msa0428240 | 0.801715 | 7.900527e-49 | -8.615850e-47 |
| Msa0041720 | Msa0435690 | 0.825239 | 5.225106e-54 | -8.615850e-47 |
| Msa0041720 | Msa0481530 | 0.802755 | 4.824930e-49 | -8.615850e-47 |
| Msa0041720 | Msa0481750 | 0.804932 | 1.703691e-49 | -8.615850e-47 |
| Msa0041720 | Msa0495330 | 0.801960 | 7.034641e-49 | -8.615850e-47 |
| Msa0041720 | Msa0506670 | 0.800629 | 1.317334e-48 | -8.615850e-47 |
| Msa0041720 | Msa0511310 | 0.804447 | 2.150521e-49 | -8.615850e-47 |
| Msa0041720 | Msa0517090 | 0.814125 | 1.806570e-51 | -8.615850e-47 |
| Msa0041720 | Msa0520710 | 0.824945 | 6.130350e-54 | -8.615850e-47 |
| Msa0041720 | Msa0529890 | 0.825177 | 5.404396e-54 | -8.615850e-47 |
| Msa0041720 | Msa0530260 | 0.806142 | 9.496362e-50 | -8.615850e-47 |
| Msa0041720 | Msa0532960 | 0.804538 | 2.059060e-49 | -8.615850e-47 |
| Msa0041720 | Msa0532990 | 0.831035 | 2.097454e-55 | -8.615850e-47 |
| Msa0041720 | Msa0542090 | 0.805184 | 1.509050e-49 | -8.615850e-47 |
| Msa0041720 | Msa0542130 | 0.802116 | 6.536190e-49 | -8.615850e-47 |
| Msa0041720 | Msa0545700 | 0.808777 | 2.621092e-50 | -8.615850e-47 |
| Msa0041720 | Msa0572840 | 0.806530 | 7.866731e-50 | -8.615850e-47 |
| Msa0041720 | Msa0584860 | 0.810393 | 1.178742e-50 | -8.615850e-47 |
| Msa0041720 | Msa0585560 | 0.819524 | 1.109998e-52 | -8.615850e-47 |
| Msa0041720 | Msa0615440 | 0.826929 | 2.071612e-54 | -8.615850e-47 |
| Msa0041720 | Msa0620620 | 0.826007 | 3.435870e-54 | -8.615850e-47 |
| Msa0041720 | Msa0625720 | 0.823376 | 1.432342e-53 | -8.615850e-47 |
| Msa0041720 | Msa0658590 | 0.802232 | 6.186331e-49 | -8.615850e-47 |
| Msa0041720 | Msa0661320 | 0.814586 | 1.428899e-51 | -8.615850e-47 |
| Msa0041720 | Msa0663390 | 0.806529 | 7.870614e-50 | -8.615850e-47 |
| Msa0041720 | Msa0679290 | -0.809263 | 2.062777e-50 | -8.615850e-47 |
| Msa0041720 | Msa0679700 | 0.815508 | 8.920729e-52 | -8.615850e-47 |
| Msa0041720 | Msa0680660 | 0.818041 | 2.410747e-52 | -8.615850e-47 |
| Msa0041720 | Msa0689260 | 0.804455 | 2.142433e-49 | -8.615850e-47 |
| Msa0041720 | Msa0698490 | 0.825856 | 3.731936e-54 | -8.615850e-47 |
| Msa0041720 | Msa0698660 | 0.819376 | 1.200083e-52 | -8.615850e-47 |
| Msa0041720 | Msa0707250 | 0.818427 | 1.970962e-52 | -8.615850e-47 |
| Msa0041720 | Msa0721280 | 0.805480 | 1.307967e-49 | -8.615850e-47 |
| Msa0041720 | Msa0731940 | 0.813983 | 1.942046e-51 | -8.615850e-47 |
| Msa0041720 | Msa0756460 | 0.802810 | 4.700558e-49 | -8.615850e-47 |
| Msa0041720 | Msa0762970 | 0.823464 | 1.366147e-53 | -8.615850e-47 |
| Msa0041720 | Msa0793800 | 0.803362 | 3.615286e-49 | -8.615850e-47 |
| Msa0041720 | Msa0805430 | 0.805815 | 1.112762e-49 | -8.615850e-47 |
| Msa0041720 | Msa0817460 | 0.826712 | 2.334051e-54 | -8.615850e-47 |
| Msa0041720 | Msa0826760 | 0.833400 | 5.451023e-56 | -8.615850e-47 |
| Msa0041720 | Msa0831530 | 0.800822 | 1.203183e-48 | -8.615850e-47 |
| Msa0041720 | Msa0832340 | 0.802876 | 4.555746e-49 | -8.615850e-47 |
| Msa0041720 | Msa0853520 | 0.813227 | 2.847601e-51 | -8.615850e-47 |
| Msa0041720 | Msa0865330 | 0.804646 | 1.955001e-49 | -8.615850e-47 |
| Msa0041720 | Msa0868160 | 0.814784 | 1.291840e-51 | -8.615850e-47 |
| Msa0041720 | Msa0890550 | 0.818238 | 2.175393e-52 | -8.615850e-47 |
| Msa0041720 | Msa0927380 | 0.802986 | 4.323315e-49 | -8.615850e-47 |
| Msa0041720 | Msa0959360 | 0.802433 | 5.622734e-49 | -8.615850e-47 |
| Msa0041720 | Msa0960740 | 0.825677 | 4.114984e-54 | -8.615850e-47 |
| Msa0041720 | Msa0974070 | 0.807815 | 4.204144e-50 | -8.615850e-47 |
| Msa0041720 | Msa0974080 | 0.809118 | 2.216507e-50 | -8.615850e-47 |
| Msa0041720 | Msa0994390 | 0.808451 | 3.077574e-50 | -8.615850e-47 |
| Msa0041720 | Msa1000930 | 0.804137 | 2.495194e-49 | -8.615850e-47 |
| Msa0041720 | Msa1006840 | 0.805442 | 1.332332e-49 | -8.615850e-47 |
| Msa0041720 | Msa1019640 | 0.809405 | 1.923688e-50 | -8.615850e-47 |
| Msa0041720 | Msa1026940 | 0.827174 | 1.809484e-54 | -8.615850e-47 |
| Msa0041720 | Msa1029070 | 0.816692 | 4.851857e-52 | -8.615850e-47 |
| Msa0041720 | Msa1031930 | 0.800284 | 1.548954e-48 | -8.615850e-47 |
| Msa0041720 | Msa1034500 | 0.805010 | 1.640856e-49 | -8.615850e-47 |
| Msa0041720 | Msa1038080 | 0.833581 | 4.911637e-56 | -8.615850e-47 |
| Msa0041720 | Msa1040840 | 0.819475 | 1.139007e-52 | -8.615850e-47 |
| Msa0041720 | Msa1064250 | 0.819950 | 8.873147e-53 | -8.615850e-47 |
| Msa0041720 | Msa1075540 | 0.812014 | 5.246272e-51 | -8.615850e-47 |
| Msa0041720 | Msa1080640 | 0.825510 | 4.505783e-54 | -8.615850e-47 |
| Msa0041720 | Msa1080800 | 0.820677 | 6.046112e-53 | -8.615850e-47 |
| Msa0041720 | Msa1089450 | 0.819505 | 1.121068e-52 | -8.615850e-47 |
| Msa0041720 | Msa1104090 | 0.800731 | 1.256286e-48 | -8.615850e-47 |
| Msa0041720 | Msa1104370 | 0.809216 | 2.111793e-50 | -8.615850e-47 |
| Msa0041720 | Msa1111870 | 0.820810 | 5.634300e-53 | -8.615850e-47 |
| Msa0041720 | Msa1113170 | 0.802711 | 4.927894e-49 | -8.615850e-47 |
| Msa0041720 | Msa1121490 | 0.805866 | 1.085629e-49 | -8.615850e-47 |
| Msa0041720 | Msa1126450 | 0.820565 | 6.415438e-53 | -8.615850e-47 |
| Msa0041720 | Msa1129690 | 0.804250 | 2.363894e-49 | -8.615850e-47 |
| Msa0041720 | Msa1135890 | 0.826526 | 2.585380e-54 | -8.615850e-47 |
| Msa0041720 | Msa1137570 | 0.810033 | 1.409666e-50 | -8.615850e-47 |
| Msa0041720 | Msa1147900 | 0.808793 | 2.600697e-50 | -8.615850e-47 |
| Msa0041720 | Msa1156160 | 0.814475 | 1.511907e-51 | -8.615850e-47 |
| Msa0041720 | Msa1162780 | 0.804627 | 1.972669e-49 | -8.615850e-47 |
| Msa0041720 | Msa1173300 | 0.808467 | 3.053966e-50 | -8.615850e-47 |
| Msa0041720 | Msa1206360 | 0.801667 | 8.080223e-49 | -8.615850e-47 |
| Msa0041720 | Msa1206850 | 0.803337 | 3.657412e-49 | -8.615850e-47 |
| Msa0041720 | Msa1208880 | 0.813124 | 2.999713e-51 | -8.615850e-47 |
| Msa0041720 | Msa1210110 | 0.803827 | 2.894175e-49 | -8.615850e-47 |
| Msa0041720 | Msa1218450 | 0.805621 | 1.221772e-49 | -8.615850e-47 |
| Msa0041720 | Msa1245930 | 0.817247 | 3.640614e-52 | -8.615850e-47 |
| Msa0041720 | Msa1259060 | 0.823541 | 1.310598e-53 | -8.615850e-47 |
| Msa0041720 | Msa1265590 | 0.801465 | 8.891987e-49 | -8.615850e-47 |
| Msa0041720 | Msa1275590 | 0.809672 | 1.685639e-50 | -8.615850e-47 |
| Msa0041720 | Msa1277660 | 0.803695 | 3.083766e-49 | -8.615850e-47 |
| Msa0041720 | Msa1280420 | 0.807443 | 5.043221e-50 | -8.615850e-47 |
| Msa0041720 | Msa1286610 | 0.824240 | 8.985109e-54 | -8.615850e-47 |
| Msa0041720 | Msa1287460 | 0.803215 | 3.876290e-49 | -8.615850e-47 |
| Msa0041720 | Msa1307600 | 0.804503 | 2.094115e-49 | -8.615850e-47 |
| Msa0041720 | Msa1344340 | 0.875426 | 3.110156e-68 | -8.615850e-47 |
| Msa0041720 | Msa1353470 | 0.806303 | 8.784123e-50 | -8.615850e-47 |
| Msa0041720 | Msa1357890 | 0.805642 | 1.209842e-49 | -8.615850e-47 |
| Msa0041720 | Msa1358250 | 0.802590 | 5.219898e-49 | -8.615850e-47 |
| Msa0041720 | Msa1358670 | 0.817877 | 2.625311e-52 | -8.615850e-47 |
| Msa0041720 | Msa1360980 | 0.813791 | 2.140339e-51 | -8.615850e-47 |
| Msa0041720 | Msa1365600 | 0.801444 | 8.977835e-49 | -8.615850e-47 |
| Msa0041720 | Msa1379500 | 0.803541 | 3.318976e-49 | -8.615850e-47 |
| Msa0041720 | Msa1390700 | 0.812457 | 4.199848e-51 | -8.615850e-47 |
| Msa0041720 | Msa1392780 | 0.811990 | 5.308507e-51 | -8.615850e-47 |
| Msa0041720 | Msa1392910 | 0.815444 | 9.217378e-52 | -8.615850e-47 |
| Msa0041720 | Msa1398090 | 0.807025 | 6.182268e-50 | -8.615850e-47 |
| Msa0041720 | Msa1400580 | 0.832015 | 1.202770e-55 | -8.615850e-47 |
| Msa0041720 | Msa1410420 | 0.806329 | 8.672795e-50 | -8.615850e-47 |
| Msa0041720 | Msa1416370 | 0.800664 | 1.296435e-48 | -8.615850e-47 |
| Msa0041720 | Msa1423350 | 0.831839 | 1.329331e-55 | -8.615850e-47 |
| Msa0041720 | Msa1425880 | 0.815213 | 1.037316e-51 | -8.615850e-47 |
| Msa0041720 | Msa1435070 | 0.826003 | 3.442981e-54 | -8.615850e-47 |
| Msa0041720 | Msa1439700 | 0.820260 | 7.535990e-53 | -8.615850e-47 |
| Msa0041720 | Msa1439710 | 0.817795 | 2.739077e-52 | -8.615850e-47 |
| Msa0041720 | Msa1440310 | 0.833064 | 6.610562e-56 | -8.615850e-47 |
| Msa0041720 | Msa1445390 | -0.820410 | 6.962674e-53 | -8.615850e-47 |
| Msa0041720 | Msa1446780 | 0.821177 | 4.638835e-53 | -8.615850e-47 |
| Msa0041720 | Msa1449340 | -0.817122 | 3.883407e-52 | -8.615850e-47 |
| Msa0041720 | Msa1454530 | 0.812019 | 5.231873e-51 | -8.615850e-47 |
| Msa0041720 | Msa1457920 | 0.805025 | 1.629232e-49 | -8.615850e-47 |
| Msa0041720 | Msa1466540 | 0.829249 | 5.720533e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041720 | MtrunA17_Chr1g0207261 | 92.780 | 277 | 4 | 3 | 1 | 277 | 1 | 261 | 1.09e-179 | 494 |
| Msa0041720 | MtrunA17_Chr5g0393771 | 58.108 | 74 | 26 | 1 | 125 | 198 | 19 | 87 | 2.53e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041720 | AT3G19650.1 | 32.051 | 312 | 152 | 9 | 7 | 277 | 10 | 302 | 1.40e-16 | 78.6 |
Find 96 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCCTTTCATTCCTTTC+TGG | 0.052010 | 1_1:-72198921 | None:intergenic |
| CCATCTCTTCTATATTTCTT+AGG | 0.105254 | 1_1:-72196819 | None:intergenic |
| CTTCTTTGGGATTAGGATTT+AGG | 0.107492 | 1_1:-72196595 | None:intergenic |
| TTCAAACTGTAGCCAATATT+TGG | 0.187432 | 1_1:+72199246 | Msa0041720:three_prime_UTR |
| CTTCTCTGTTTGAGTCTTAA+TGG | 0.200939 | 1_1:-72199126 | None:intergenic |
| ATCTGAATCGAATCCTTCTT+TGG | 0.219588 | 1_1:-72196609 | None:intergenic |
| ATCTGATCATCCTCATTCTT+TGG | 0.243825 | 1_1:-72199191 | None:intergenic |
| TGAGGAAAAGGCCAGCATTT+AGG | 0.247990 | 1_1:+72198817 | Msa0041720:CDS |
| TTTCTGGAGGGTGGCTAGTA+TGG | 0.266311 | 1_1:-72198905 | None:intergenic |
| TCGAATCCTTCTTTGGGATT+AGG | 0.276855 | 1_1:-72196602 | None:intergenic |
| TGAGAAATCACTGGCTAAAC+TGG | 0.294321 | 1_1:+72198734 | Msa0041720:CDS |
| GAGGAAAAGGCCAGCATTTA+GGG | 0.296936 | 1_1:+72198818 | Msa0041720:CDS |
| TATAAAGAAATCATGAAAAT+TGG | 0.297933 | 1_1:-72199339 | None:intergenic |
| CTTCCTAGGTTCTCGCTTGT+TGG | 0.303209 | 1_1:-72199009 | None:intergenic |
| TTCTCTGTTTGAGTCTTAAT+GGG | 0.316375 | 1_1:-72199125 | None:intergenic |
| CATCTCTTCTATATTTCTTA+GGG | 0.330904 | 1_1:-72196818 | None:intergenic |
| AGAGGAAGAGACAAATTTAA+TGG | 0.334230 | 1_1:+72199086 | Msa0041720:CDS |
| TAATATCATAATGATCGATT+TGG | 0.355259 | 1_1:-72199413 | None:intergenic |
| TTTGACCTGTCTCCAACCTT+TGG | 0.360011 | 1_1:-72198695 | None:intergenic |
| AATATTTGGTAAGCTTGTTA+TGG | 0.363167 | 1_1:+72199260 | Msa0041720:three_prime_UTR |
| ATAACAAGCTTACCAAATAT+TGG | 0.366379 | 1_1:-72199258 | None:intergenic |
| TCTGAATCGAATCCTTCTTT+GGG | 0.370152 | 1_1:-72196608 | None:intergenic |
| GCTTCTCAGGTCTATCTAGA+TGG | 0.381632 | 1_1:-72198965 | None:intergenic |
| TCCTCTACAATTCGCTTCTC+AGG | 0.409939 | 1_1:-72198978 | None:intergenic |
| TCAGGTCTATCTAGATGGTT+AGG | 0.410188 | 1_1:-72198960 | None:intergenic |
| TGATAATAAGAGCGAGATCT+TGG | 0.413507 | 1_1:-72196924 | None:intergenic |
| TCATGAAAATTGGTAATCTC+TGG | 0.425387 | 1_1:-72199329 | None:intergenic |
| AAGATCTCGCTCTTATTATC+AGG | 0.426217 | 1_1:+72196926 | Msa0041720:CDS |
| GATGAAAATCCATCCTTCCT+AGG | 0.435435 | 1_1:-72199023 | None:intergenic |
| GGGTTATCCCTAATGACAAC+GGG | 0.443071 | 1_1:+72199519 | Msa0041720:three_prime_UTR |
| TCTGTTGAGCACTTGAGCTC+TGG | 0.443320 | 1_1:+72199469 | Msa0041720:three_prime_UTR |
| TCCTTTCATTCCTTTCTGGA+GGG | 0.447281 | 1_1:-72198917 | None:intergenic |
| TGGAGGTTGAGATGAATGTT+TGG | 0.448773 | 1_1:-72196904 | None:intergenic |
| GGATGATCAGATTGCAAAGC+TGG | 0.457045 | 1_1:+72199202 | Msa0041720:CDS |
| TTCCTTTCATTCCTTTCTGG+AGG | 0.457901 | 1_1:-72198918 | None:intergenic |
| CAACACCTTCTGTGAGGAAA+AGG | 0.461132 | 1_1:+72198805 | Msa0041720:CDS |
| TTTACTGTCACTGTCGCAGC+TGG | 0.462931 | 1_1:-72198876 | None:intergenic |
| GAGACATGTAAATCTAGAAC+AGG | 0.478739 | 1_1:-72199691 | None:intergenic |
| TGGTTCAGAATGATCATTTG+TGG | 0.481130 | 1_1:-72196877 | None:intergenic |
| ATCTTCTTCTCCCTAAATGC+TGG | 0.485997 | 1_1:-72198828 | None:intergenic |
| AAAGGTATATGCTCAAAGTA+AGG | 0.495225 | 1_1:+72198665 | Msa0041720:CDS |
| CTAAATCCTAATCCCAAAGA+AGG | 0.496188 | 1_1:+72196596 | Msa0041720:five_prime_UTR |
| AGAATGACGACGCTTCGAAT+CGG | 0.503307 | 1_1:-72196678 | None:intergenic |
| TTTCATTCCTTTCTGGAGGG+TGG | 0.506208 | 1_1:-72198914 | None:intergenic |
| TTTCATCAAGAGTAAGGTAT+GGG | 0.512420 | 1_1:+72199039 | Msa0041720:CDS |
| TGGTCGAAGCACTGGTCAAA+GGG | 0.514223 | 1_1:+72198516 | Msa0041720:CDS |
| GTGCAGGTTGGTCGAAGCAC+TGG | 0.521659 | 1_1:+72198508 | Msa0041720:CDS |
| AGAAGCGAATTGTAGAGGAC+AGG | 0.530152 | 1_1:+72198982 | Msa0041720:CDS |
| CCTAAGAAATATAGAAGAGA+TGG | 0.536031 | 1_1:+72196819 | Msa0041720:CDS |
| TAAATATGAATTGTTGATGA+GGG | 0.536912 | 1_1:-72199667 | None:intergenic |
| TAAGGAGAATAACCAAAGGT+TGG | 0.542846 | 1_1:+72198683 | Msa0041720:CDS |
| AATAACCAAAGGTTGGAGAC+AGG | 0.542889 | 1_1:+72198690 | Msa0041720:CDS |
| TTGGTCGAAGCACTGGTCAA+AGG | 0.551358 | 1_1:+72198515 | Msa0041720:CDS |
| TAATAAGAGCGAGATCTTGG+AGG | 0.562376 | 1_1:-72196921 | None:intergenic |
| GCAAAGAGATGAGAAATCAC+TGG | 0.563837 | 1_1:+72198725 | Msa0041720:CDS |
| ATAAATATGAATTGTTGATG+AGG | 0.565427 | 1_1:-72199668 | None:intergenic |
| TTAAGACTCAAACAGAGAAG+TGG | 0.567545 | 1_1:+72199129 | Msa0041720:CDS |
| GCTAAATTCAGCATAGCACC+TGG | 0.571010 | 1_1:+72199443 | Msa0041720:three_prime_UTR |
| AAGCGAGAACCTAGGAAGGA+TGG | 0.574352 | 1_1:+72199014 | Msa0041720:CDS |
| ACCCTCCAGAAAGGAATGAA+AGG | 0.576042 | 1_1:+72198916 | Msa0041720:CDS |
| TCCAGAAAGGAATGAAAGGA+AGG | 0.580588 | 1_1:+72198920 | Msa0041720:CDS |
| ATACTAGCCACCCTCCAGAA+AGG | 0.585699 | 1_1:+72198907 | Msa0041720:CDS |
| GAAACATGATTTGTATCAAG+AGG | 0.586742 | 1_1:+72199151 | Msa0041720:CDS |
| AGATTATATTCCAAAGAATG+AGG | 0.586751 | 1_1:+72199181 | Msa0041720:CDS |
| AAATCACTGGCTAAACTGGA+TGG | 0.588753 | 1_1:+72198738 | Msa0041720:CDS |
| ACCTGAGAAGCGAATTGTAG+AGG | 0.590811 | 1_1:+72198977 | Msa0041720:CDS |
| GTAGATAGTTTAGCAAAGCA+TGG | 0.591110 | 1_1:-72199584 | None:intergenic |
| GTTGAGCACTTGAGCTCTGG+CGG | 0.592419 | 1_1:+72199472 | Msa0041720:three_prime_UTR |
| ATGACGACGCTTCGAATCGG+AGG | 0.593613 | 1_1:-72196675 | None:intergenic |
| AGTGACAGTGATACGTAGAA+AGG | 0.593843 | 1_1:+72196559 | Msa0041720:five_prime_UTR |
| TATTTCAACATGTGCCATGT+GGG | 0.594116 | 1_1:+72199299 | Msa0041720:three_prime_UTR |
| TGAATGGGGCAATACTGTGC+AGG | 0.607456 | 1_1:+72198492 | Msa0041720:CDS |
| GGATTCGATTCAGATTCTTG+TGG | 0.613152 | 1_1:+72196617 | Msa0041720:five_prime_UTR |
| GAAGCGAATTGTAGAGGACA+GGG | 0.619839 | 1_1:+72198983 | Msa0041720:CDS |
| TTCATCAAGAGTAAGGTATG+GGG | 0.620262 | 1_1:+72199040 | Msa0041720:CDS |
| CAACAAGCGAGAACCTAGGA+AGG | 0.622024 | 1_1:+72199010 | Msa0041720:CDS |
| CAAGTGCTCAACAGAGACCC+AGG | 0.622481 | 1_1:-72199461 | None:intergenic |
| GATCTCAGTGGATTCAAGAG+AGG | 0.625358 | 1_1:+72198848 | Msa0041720:CDS |
| AGAAAGGAATGAAAGGAAGG+AGG | 0.636511 | 1_1:+72198923 | Msa0041720:CDS |
| TCATCAAGAGTAAGGTATGG+GGG | 0.637056 | 1_1:+72199041 | Msa0041720:CDS |
| AATCCAACAAGCGAGAACCT+AGG | 0.638185 | 1_1:+72199006 | Msa0041720:CDS |
| CTAAATTCAGCATAGCACCT+GGG | 0.648130 | 1_1:+72199444 | Msa0041720:three_prime_UTR |
| ACTGGTCAAAGGGAAGCTGA+TGG | 0.653810 | 1_1:+72198526 | Msa0041720:CDS |
| GGTTGAGATGAATGTTTGGA+CGG | 0.657350 | 1_1:-72196900 | None:intergenic |
| TTATTTCAACATGTGCCATG+TGG | 0.659372 | 1_1:+72199298 | Msa0041720:three_prime_UTR |
| CTAAGCTCGATCGTGAACCA+AGG | 0.670920 | 1_1:+72196699 | Msa0041720:CDS |
| AGGGTTATCCCTAATGACAA+CGG | 0.671801 | 1_1:+72199518 | Msa0041720:three_prime_UTR |
| TGGGGCAATACTGTGCAGGT+TGG | 0.672427 | 1_1:+72198496 | Msa0041720:CDS |
| AAAGTAAGGAGAATAACCAA+AGG | 0.679155 | 1_1:+72198679 | Msa0041720:CDS |
| TGAGATGAATGTTTGGACGG+TGG | 0.681415 | 1_1:-72196897 | None:intergenic |
| ATGATCCAACACCTTCTGTG+AGG | 0.687855 | 1_1:+72198799 | Msa0041720:CDS |
| TCTCTGGAAATTGTCCCACA+TGG | 0.701395 | 1_1:-72199313 | None:intergenic |
| TAGGGAGAAGAAGATCTCAG+TGG | 0.726006 | 1_1:+72198836 | Msa0041720:CDS |
| GGAGGCAATAGCAATCACAG+AGG | 0.738956 | 1_1:+72199068 | Msa0041720:CDS |
| GTTATCCCTAATGACAACGG+GGG | 0.742554 | 1_1:+72199521 | Msa0041720:three_prime_UTR |
| GGTTATCCCTAATGACAACG+GGG | 0.760777 | 1_1:+72199520 | Msa0041720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATTTTATTTAAATGTT+AGG | + | chr1_1:72197388-72197407 | Msa0041720:intron | 10.0% |
| !!! | ATCATTTTATTTAAATGTTA+GGG | + | chr1_1:72197389-72197408 | Msa0041720:intron | 10.0% |
| !!! | AATCATTTATTTTTAAACAA+AGG | - | chr1_1:72197672-72197691 | None:intergenic | 10.0% |
| !!! | TGATATATATTATTTTCTTT+TGG | + | chr1_1:72198570-72198589 | Msa0041720:intron | 10.0% |
| !!! | TTGTCTTTTATTAACATTTA+TGG | - | chr1_1:72198113-72198132 | None:intergenic | 15.0% |
| !! | TATAAAGAAATCATGAAAAT+TGG | - | chr1_1:72199342-72199361 | None:intergenic | 15.0% |
| !!! | TTTTGTTTGAATGTTGATTA+TGG | + | chr1_1:72196780-72196799 | Msa0041720:intron | 20.0% |
| !! | TTAATGTGCTTCTTTATATT+TGG | + | chr1_1:72196980-72196999 | Msa0041720:intron | 20.0% |
| !! | AAATGTTAATAAAAGACAAC+TGG | + | chr1_1:72198114-72198133 | Msa0041720:intron | 20.0% |
| !! | ACATCTATAGCATATAAAAA+GGG | - | chr1_1:72198366-72198385 | None:intergenic | 20.0% |
| !! | AACATCTATAGCATATAAAA+AGG | - | chr1_1:72198367-72198386 | None:intergenic | 20.0% |
| !!! | CTTTACATGTTTTAGTTTTA+TGG | + | chr1_1:72199370-72199389 | Msa0041720:three_prime_UTR | 20.0% |
| !! | TAATATCATAATGATCGATT+TGG | - | chr1_1:72199416-72199435 | None:intergenic | 20.0% |
| !!! | CTAAACTATCTACTTTTTTT+TGG | + | chr1_1:72199594-72199613 | Msa0041720:three_prime_UTR | 20.0% |
| !!! | ATCTACTTTTTTTTGGTATA+TGG | + | chr1_1:72199601-72199620 | Msa0041720:three_prime_UTR | 20.0% |
| !!! | TAAATATGAATTGTTGATGA+GGG | - | chr1_1:72199670-72199689 | None:intergenic | 20.0% |
| !! | ATAAATATGAATTGTTGATG+AGG | - | chr1_1:72199671-72199690 | None:intergenic | 20.0% |
| ! | CATCTCTTCTATATTTCTTA+GGG | - | chr1_1:72196821-72196840 | None:intergenic | 25.0% |
| ! | ATGCAAATTTGAATGTAGTT+AGG | - | chr1_1:72197019-72197038 | None:intergenic | 25.0% |
| !!! | GTTTTCCAACATTTTAAGTT+TGG | - | chr1_1:72197222-72197241 | None:intergenic | 25.0% |
| ! | TTGTCAATAGCATATTATAG+CGG | + | chr1_1:72197246-72197265 | Msa0041720:intron | 25.0% |
| !!! | GAATTTTTTATCTCATTCTG+AGG | - | chr1_1:72197363-72197382 | None:intergenic | 25.0% |
| !!! | TAAGTGTGTGTTTGTTTTAT+CGG | - | chr1_1:72197585-72197604 | None:intergenic | 25.0% |
| ! | TCTAAATCAAGTAGTTAACT+TGG | + | chr1_1:72197777-72197796 | Msa0041720:intron | 25.0% |
| ! | CTAAATCAAGTAGTTAACTT+GGG | + | chr1_1:72197778-72197797 | Msa0041720:intron | 25.0% |
| ! | TGGTAAACAATAAATACGTT+GGG | + | chr1_1:72197863-72197882 | Msa0041720:intron | 25.0% |
| ! | TAGGATTTGCATTATGATTA+AGG | - | chr1_1:72197978-72197997 | None:intergenic | 25.0% |
| ! | ACCCAATACAACAATATATA+CGG | - | chr1_1:72198080-72198099 | None:intergenic | 25.0% |
| ! | AAAACCAATCTCAACATTTA+TGG | - | chr1_1:72198205-72198224 | None:intergenic | 25.0% |
| ! | TACCTTTATATAAGCAGTAT+TGG | + | chr1_1:72198273-72198292 | Msa0041720:intron | 25.0% |
| ! | TTCCAATACTGCTTATATAA+AGG | - | chr1_1:72198278-72198297 | None:intergenic | 25.0% |
| ! | TTGGAAAGAAAACATCTTAA+TGG | + | chr1_1:72198292-72198311 | Msa0041720:intron | 25.0% |
| !!! | TGTATGCAAACTATTTTTCT+GGG | + | chr1_1:72198393-72198412 | Msa0041720:intron | 25.0% |
| !!! | TCTTTTGGCTTTATTGTATA+TGG | + | chr1_1:72198585-72198604 | Msa0041720:intron | 25.0% |
| ! | TTTATTGTATATGGATGGTT+TGG | + | chr1_1:72198594-72198613 | Msa0041720:intron | 25.0% |
| ! | AGATTATATTCCAAAGAATG+AGG | + | chr1_1:72199181-72199200 | Msa0041720:CDS | 25.0% |
| ! | ATAACAAGCTTACCAAATAT+TGG | - | chr1_1:72199261-72199280 | None:intergenic | 25.0% |
| !!! | AATATTTGGTAAGCTTGTTA+TGG | + | chr1_1:72199260-72199279 | Msa0041720:three_prime_UTR | 25.0% |
| !! | ATTTTTGCAAATAGGTTAAC+AGG | + | chr1_1:72199498-72199517 | Msa0041720:three_prime_UTR | 25.0% |
| !! | TTTTTGCAAATAGGTTAACA+GGG | + | chr1_1:72199499-72199518 | Msa0041720:three_prime_UTR | 25.0% |
| ! | AATCTCGATGAGACATTTTA+GGG | - | chr1_1:72196655-72196674 | None:intergenic | 30.0% |
| CCATCTCTTCTATATTTCTT+AGG | - | chr1_1:72196822-72196841 | None:intergenic | 30.0% | |
| CCTAAGAAATATAGAAGAGA+TGG | + | chr1_1:72196819-72196838 | Msa0041720:CDS | 30.0% | |
| !!! | CCAACATTTTAAGTTTGGTT+TGG | - | chr1_1:72197217-72197236 | None:intergenic | 30.0% |
| CCAAACCAAACTTAAAATGT+TGG | + | chr1_1:72197214-72197233 | Msa0041720:intron | 30.0% | |
| !! | ATGTAGCTTCTTTAAAACCA+CGG | - | chr1_1:72197519-72197538 | None:intergenic | 30.0% |
| TTATCGGTGGAATAAACAAA+CGG | - | chr1_1:72197569-72197588 | None:intergenic | 30.0% | |
| !! | GTTGATAACATTGTTGGAAA+AGG | + | chr1_1:72197626-72197645 | Msa0041720:intron | 30.0% |
| TGATTTCTCTATTCACAAAG+AGG | + | chr1_1:72197687-72197706 | Msa0041720:intron | 30.0% | |
| ! | ACTACTTGATTTAGAGCTAA+AGG | - | chr1_1:72197772-72197791 | None:intergenic | 30.0% |
| TTTATTGTTTACCAGCTTGT+AGG | - | chr1_1:72197857-72197876 | None:intergenic | 30.0% | |
| CTGGTAAACAATAAATACGT+TGG | + | chr1_1:72197862-72197881 | Msa0041720:intron | 30.0% | |
| TAAACAATAAATACGTTGGG+AGG | + | chr1_1:72197866-72197885 | Msa0041720:intron | 30.0% | |
| TAACATCGAGAAAATGGAAA+TGG | - | chr1_1:72198003-72198022 | None:intergenic | 30.0% | |
| TGCCGTATATATTGTTGTAT+TGG | + | chr1_1:72198075-72198094 | Msa0041720:intron | 30.0% | |
| GCCGTATATATTGTTGTATT+GGG | + | chr1_1:72198076-72198095 | Msa0041720:intron | 30.0% | |
| AATCTCAACATTTATGGTGA+AGG | - | chr1_1:72198199-72198218 | None:intergenic | 30.0% | |
| TTCACCATAAATGTTGAGAT+TGG | + | chr1_1:72198198-72198217 | Msa0041720:intron | 30.0% | |
| AATGGACATTGAAGATAACT+TGG | + | chr1_1:72198310-72198329 | Msa0041720:intron | 30.0% | |
| !! | GTGTATGCAAACTATTTTTC+TGG | + | chr1_1:72198392-72198411 | Msa0041720:intron | 30.0% |
| !! | GTATGCAAACTATTTTTCTG+GGG | + | chr1_1:72198394-72198413 | Msa0041720:intron | 30.0% |
| !!! | TGTTTTAACAGCATCATGAA+TGG | + | chr1_1:72198476-72198495 | Msa0041720:intron | 30.0% |
| !! | GTTTTAACAGCATCATGAAT+GGG | + | chr1_1:72198477-72198496 | Msa0041720:intron | 30.0% |
| ! | TTTTAACAGCATCATGAATG+GGG | + | chr1_1:72198478-72198497 | Msa0041720:intron | 30.0% |
| !! | TTGGCTTTATTGTATATGGA+TGG | + | chr1_1:72198589-72198608 | Msa0041720:intron | 30.0% |
| !! | GTTTGGAATCGAAGAATTTT+GGG | - | chr1_1:72198642-72198661 | None:intergenic | 30.0% |
| !! | TGTTTGGAATCGAAGAATTT+TGG | - | chr1_1:72198643-72198662 | None:intergenic | 30.0% |
| ! | AAAGGTATATGCTCAAAGTA+AGG | + | chr1_1:72198665-72198684 | Msa0041720:CDS | 30.0% |
| AAAGTAAGGAGAATAACCAA+AGG | + | chr1_1:72198679-72198698 | Msa0041720:CDS | 30.0% | |
| ! | ATGGATTTTCATCAAGAGTA+AGG | + | chr1_1:72199033-72199052 | Msa0041720:CDS | 30.0% |
| ! | TTTTCATCAAGAGTAAGGTA+TGG | + | chr1_1:72199038-72199057 | Msa0041720:CDS | 30.0% |
| TTTCATCAAGAGTAAGGTAT+GGG | + | chr1_1:72199039-72199058 | Msa0041720:CDS | 30.0% | |
| AGAGGAAGAGACAAATTTAA+TGG | + | chr1_1:72199086-72199105 | Msa0041720:CDS | 30.0% | |
| TTCTCTGTTTGAGTCTTAAT+GGG | - | chr1_1:72199128-72199147 | None:intergenic | 30.0% | |
| ! | GAAACATGATTTGTATCAAG+AGG | + | chr1_1:72199151-72199170 | Msa0041720:CDS | 30.0% |
| TTCAAACTGTAGCCAATATT+TGG | + | chr1_1:72199246-72199265 | Msa0041720:three_prime_UTR | 30.0% | |
| ! | TCATGAAAATTGGTAATCTC+TGG | - | chr1_1:72199332-72199351 | None:intergenic | 30.0% |
| !! | CTTCTTTGGGATTAGGATTT+AGG | - | chr1_1:72196598-72196617 | None:intergenic | 35.0% |
| CTAAATCCTAATCCCAAAGA+AGG | + | chr1_1:72196596-72196615 | Msa0041720:five_prime_UTR | 35.0% | |
| TCTGAATCGAATCCTTCTTT+GGG | - | chr1_1:72196611-72196630 | None:intergenic | 35.0% | |
| ATCTGAATCGAATCCTTCTT+TGG | - | chr1_1:72196612-72196631 | None:intergenic | 35.0% | |
| ! | GAATCTCGATGAGACATTTT+AGG | - | chr1_1:72196656-72196675 | None:intergenic | 35.0% |
| TGGTTCAGAATGATCATTTG+TGG | - | chr1_1:72196880-72196899 | None:intergenic | 35.0% | |
| TGATAATAAGAGCGAGATCT+TGG | - | chr1_1:72196927-72196946 | None:intergenic | 35.0% | |
| AAGATCTCGCTCTTATTATC+AGG | + | chr1_1:72196926-72196945 | Msa0041720:CDS | 35.0% | |
| ! | AAAGAAGCACATTAAGCTGA+AGG | - | chr1_1:72196975-72196994 | None:intergenic | 35.0% |
| ATGTAGTTAGGAACAGAAGT+TGG | - | chr1_1:72197007-72197026 | None:intergenic | 35.0% | |
| !!! | TTTTATCTCATTCTGAGGTG+AGG | - | chr1_1:72197358-72197377 | None:intergenic | 35.0% |
| TGAATGGATGTCTCACTAAA+TGG | - | chr1_1:72197441-72197460 | None:intergenic | 35.0% | |
| ACATCCATTCATGCAATGTT+TGG | + | chr1_1:72197450-72197469 | Msa0041720:intron | 35.0% | |
| ATGTCCAAACATTGCATGAA+TGG | - | chr1_1:72197457-72197476 | None:intergenic | 35.0% | |
| TGTATAACCCTGCATACAAT+TGG | + | chr1_1:72197817-72197836 | Msa0041720:intron | 35.0% | |
| AGTAGCTAACATCGAGAAAA+TGG | - | chr1_1:72198009-72198028 | None:intergenic | 35.0% | |
| ATGTTAGCTACTACAACATG+TGG | + | chr1_1:72198017-72198036 | Msa0041720:intron | 35.0% | |
| GTTACTTATTCGAGATTACC+AGG | + | chr1_1:72198050-72198069 | Msa0041720:intron | 35.0% | |
| AACAATATATACGGCAATCC+TGG | - | chr1_1:72198071-72198090 | None:intergenic | 35.0% | |
| ! | ACAACTGGAATTTGCTTTGA+CGG | + | chr1_1:72198129-72198148 | Msa0041720:intron | 35.0% |
| TGACCTCCTTATAAATCAAG+GGG | - | chr1_1:72198238-72198257 | None:intergenic | 35.0% | |
| CTGACCTCCTTATAAATCAA+GGG | - | chr1_1:72198239-72198258 | None:intergenic | 35.0% | |
| ACTGACCTCCTTATAAATCA+AGG | - | chr1_1:72198240-72198259 | None:intergenic | 35.0% | |
| GATGCTGTTAAAACATGCAT+TGG | - | chr1_1:72198471-72198490 | None:intergenic | 35.0% | |
| TCTTCGATTCCAAACAGAAA+AGG | + | chr1_1:72198647-72198666 | Msa0041720:intron | 35.0% | |
| ! | GAGCATATACCTTTTCTGTT+TGG | - | chr1_1:72198659-72198678 | None:intergenic | 35.0% |
| TAAGGAGAATAACCAAAGGT+TGG | + | chr1_1:72198683-72198702 | Msa0041720:CDS | 35.0% | |
| TTCATCAAGAGTAAGGTATG+GGG | + | chr1_1:72199040-72199059 | Msa0041720:CDS | 35.0% | |
| CTTCTCTGTTTGAGTCTTAA+TGG | - | chr1_1:72199129-72199148 | None:intergenic | 35.0% | |
| TTAAGACTCAAACAGAGAAG+TGG | + | chr1_1:72199129-72199148 | Msa0041720:CDS | 35.0% | |
| ATCTGATCATCCTCATTCTT+TGG | - | chr1_1:72199194-72199213 | None:intergenic | 35.0% | |
| TTATTTCAACATGTGCCATG+TGG | + | chr1_1:72199298-72199317 | Msa0041720:three_prime_UTR | 35.0% | |
| TATTTCAACATGTGCCATGT+GGG | + | chr1_1:72199299-72199318 | Msa0041720:three_prime_UTR | 35.0% | |
| GTAGATAGTTTAGCAAAGCA+TGG | - | chr1_1:72199587-72199606 | None:intergenic | 35.0% | |
| AGTGACAGTGATACGTAGAA+AGG | + | chr1_1:72196559-72196578 | Msa0041720:five_prime_UTR | 40.0% | |
| !! | TCGAATCCTTCTTTGGGATT+AGG | - | chr1_1:72196605-72196624 | None:intergenic | 40.0% |
| GGATTCGATTCAGATTCTTG+TGG | + | chr1_1:72196617-72196636 | Msa0041720:five_prime_UTR | 40.0% | |
| ! | GAAGAAGAAGAAGTGTACCT+TGG | - | chr1_1:72196719-72196738 | None:intergenic | 40.0% |
| GGTTGAGATGAATGTTTGGA+CGG | - | chr1_1:72196903-72196922 | None:intergenic | 40.0% | |
| TGGAGGTTGAGATGAATGTT+TGG | - | chr1_1:72196907-72196926 | None:intergenic | 40.0% | |
| TAATAAGAGCGAGATCTTGG+AGG | - | chr1_1:72196924-72196943 | None:intergenic | 40.0% | |
| TGCATACACCTGAAACTTGA+TGG | + | chr1_1:72197034-72197053 | Msa0041720:intron | 40.0% | |
| TACACCTGAAACTTGATGGA+AGG | + | chr1_1:72197038-72197057 | Msa0041720:intron | 40.0% | |
| ! | AACTTGATGGAAGGCATGTA+TGG | + | chr1_1:72197047-72197066 | Msa0041720:intron | 40.0% |
| TTTACAGCTGTAGATGTGTC+CGG | + | chr1_1:72197122-72197141 | Msa0041720:intron | 40.0% | |
| TCCTAAGAGCTTAATACCAG+CGG | - | chr1_1:72197187-72197206 | None:intergenic | 40.0% | |
| AGTAGAGCAACCTATTGTAG+CGG | + | chr1_1:72197300-72197319 | Msa0041720:intron | 40.0% | |
| !!! | ACTATTTTGGCCGCTACAAT+AGG | - | chr1_1:72197313-72197332 | None:intergenic | 40.0% |
| TATTGTAGCGGCCAAAATAG+TGG | + | chr1_1:72197312-72197331 | Msa0041720:intron | 40.0% | |
| TCATGCAATGTTTGGACATG+TGG | + | chr1_1:72197458-72197477 | Msa0041720:intron | 40.0% | |
| TCTCACCTTTCAAAGCCATT+TGG | + | chr1_1:72197493-72197512 | Msa0041720:intron | 40.0% | |
| !! | TCTTTAAAACCACGGCCAAA+TGG | - | chr1_1:72197511-72197530 | None:intergenic | 40.0% |
| !!! | GTGTGTGTTTGTTTTATCGG+TGG | - | chr1_1:72197582-72197601 | None:intergenic | 40.0% |
| ! | TTAGCTGCCATTTCACTATG+TGG | + | chr1_1:72197602-72197621 | Msa0041720:intron | 40.0% |
| ! | TAGCTGCCATTTCACTATGT+GGG | + | chr1_1:72197603-72197622 | Msa0041720:intron | 40.0% |
| ATCAACCCCACATAGTGAAA+TGG | - | chr1_1:72197612-72197631 | None:intergenic | 40.0% | |
| !! | TGTGGGGTTGATAACATTGT+TGG | + | chr1_1:72197620-72197639 | Msa0041720:intron | 40.0% |
| AAGCTGACCAATTGTATGCA+GGG | - | chr1_1:72197827-72197846 | None:intergenic | 40.0% | |
| TAAATACGTTGGGAGGAAAC+TGG | + | chr1_1:72197873-72197892 | Msa0041720:intron | 40.0% | |
| AAATACGTTGGGAGGAAACT+GGG | + | chr1_1:72197874-72197893 | Msa0041720:intron | 40.0% | |
| CCAAAGCAAACAGTAACGAA+TGG | - | chr1_1:72197916-72197935 | None:intergenic | 40.0% | |
| CCATTCGTTACTGTTTGCTT+TGG | + | chr1_1:72197913-72197932 | Msa0041720:intron | 40.0% | |
| AATTGCTCACAACTTGTACC+AGG | - | chr1_1:72197949-72197968 | None:intergenic | 40.0% | |
| CGAGAAAATGGAAATGGTGT+AGG | - | chr1_1:72197997-72198016 | None:intergenic | 40.0% | |
| TTAGCTACTACAACATGTGG+TGG | + | chr1_1:72198020-72198039 | Msa0041720:intron | 40.0% | |
| TAGCTACTACAACATGTGGT+GGG | + | chr1_1:72198021-72198040 | Msa0041720:intron | 40.0% | |
| CCTTATAAATCAAGGGGCAA+AGG | - | chr1_1:72198232-72198251 | None:intergenic | 40.0% | |
| CCTTTGCCCCTTGATTTATA+AGG | + | chr1_1:72198229-72198248 | Msa0041720:intron | 40.0% | |
| TTGCCCCTTGATTTATAAGG+AGG | + | chr1_1:72198232-72198251 | Msa0041720:intron | 40.0% | |
| !!! | AAACTATTTTTCTGGGGCGT+GGG | + | chr1_1:72198400-72198419 | Msa0041720:intron | 40.0% |
| AATAACCAAAGGTTGGAGAC+AGG | + | chr1_1:72198690-72198709 | Msa0041720:CDS | 40.0% | |
| GCAAAGAGATGAGAAATCAC+TGG | + | chr1_1:72198725-72198744 | Msa0041720:CDS | 40.0% | |
| ! | TGAGAAATCACTGGCTAAAC+TGG | + | chr1_1:72198734-72198753 | Msa0041720:CDS | 40.0% |
| ! | AAATCACTGGCTAAACTGGA+TGG | + | chr1_1:72198738-72198757 | Msa0041720:CDS | 40.0% |
| !! | GAAGAGACAGTTTTCGAGAA+AGG | + | chr1_1:72198772-72198791 | Msa0041720:CDS | 40.0% |
| ATCTTCTTCTCCCTAAATGC+TGG | - | chr1_1:72198831-72198850 | None:intergenic | 40.0% | |
| TCCTTTCATTCCTTTCTGGA+GGG | - | chr1_1:72198920-72198939 | None:intergenic | 40.0% | |
| TTCCTTTCATTCCTTTCTGG+AGG | - | chr1_1:72198921-72198940 | None:intergenic | 40.0% | |
| TCCAGAAAGGAATGAAAGGA+AGG | + | chr1_1:72198920-72198939 | Msa0041720:CDS | 40.0% | |
| TCCTTCCTTTCATTCCTTTC+TGG | - | chr1_1:72198924-72198943 | None:intergenic | 40.0% | |
| AGAAAGGAATGAAAGGAAGG+AGG | + | chr1_1:72198923-72198942 | Msa0041720:CDS | 40.0% | |
| TCAGGTCTATCTAGATGGTT+AGG | - | chr1_1:72198963-72198982 | None:intergenic | 40.0% | |
| GATGAAAATCCATCCTTCCT+AGG | - | chr1_1:72199026-72199045 | None:intergenic | 40.0% | |
| TCATCAAGAGTAAGGTATGG+GGG | + | chr1_1:72199041-72199060 | Msa0041720:CDS | 40.0% | |
| CTAAATTCAGCATAGCACCT+GGG | + | chr1_1:72199444-72199463 | Msa0041720:three_prime_UTR | 40.0% | |
| ! | GGCGGTCAATTTTTGCAAAT+AGG | + | chr1_1:72199490-72199509 | Msa0041720:three_prime_UTR | 40.0% |
| AGGGTTATCCCTAATGACAA+CGG | + | chr1_1:72199518-72199537 | Msa0041720:three_prime_UTR | 40.0% | |
| GATGAGGGAAAAAAGAACAC+AGG | - | chr1_1:72199655-72199674 | None:intergenic | 40.0% | |
| AGAATGACGACGCTTCGAAT+CGG | - | chr1_1:72196681-72196700 | None:intergenic | 45.0% | |
| TGAGATGAATGTTTGGACGG+TGG | - | chr1_1:72196900-72196919 | None:intergenic | 45.0% | |
| CATGCCTTCCATCAAGTTTC+AGG | - | chr1_1:72197045-72197064 | None:intergenic | 45.0% | |
| ! | TGGAAGGCATGTATGGTGTT+TGG | + | chr1_1:72197054-72197073 | Msa0041720:intron | 45.0% |
| ACTGACACAAACATGGACAC+CGG | - | chr1_1:72197144-72197163 | None:intergenic | 45.0% | |
| !! | ACGAAGCACTGACACAAACA+TGG | - | chr1_1:72197151-72197170 | None:intergenic | 45.0% |
| TGTTTGTGTCAGTGCTTCGT+AGG | + | chr1_1:72197151-72197170 | Msa0041720:intron | 45.0% | |
| TCCGCTGGTATTAAGCTCTT+AGG | + | chr1_1:72197183-72197202 | Msa0041720:intron | 45.0% | |
| ! | AGCTGCCATTTCACTATGTG+GGG | + | chr1_1:72197604-72197623 | Msa0041720:intron | 45.0% |
| CAAGCTGACCAATTGTATGC+AGG | - | chr1_1:72197828-72197847 | None:intergenic | 45.0% | |
| !!! | CAAACTATTTTTCTGGGGCG+TGG | + | chr1_1:72198399-72198418 | Msa0041720:intron | 45.0% |
| ! | GCATTGGAAAGCATATACCG+AGG | - | chr1_1:72198455-72198474 | None:intergenic | 45.0% |
| TTTGACCTGTCTCCAACCTT+TGG | - | chr1_1:72198698-72198717 | None:intergenic | 45.0% | |
| ATGATCCAACACCTTCTGTG+AGG | + | chr1_1:72198799-72198818 | Msa0041720:CDS | 45.0% | |
| !! | CTTTTCCTCACAGAAGGTGT+TGG | - | chr1_1:72198807-72198826 | None:intergenic | 45.0% |
| CAACACCTTCTGTGAGGAAA+AGG | + | chr1_1:72198805-72198824 | Msa0041720:CDS | 45.0% | |
| TGAGGAAAAGGCCAGCATTT+AGG | + | chr1_1:72198817-72198836 | Msa0041720:CDS | 45.0% | |
| GAGGAAAAGGCCAGCATTTA+GGG | + | chr1_1:72198818-72198837 | Msa0041720:CDS | 45.0% | |
| TAGGGAGAAGAAGATCTCAG+TGG | + | chr1_1:72198836-72198855 | Msa0041720:CDS | 45.0% | |
| ! | GATCTCAGTGGATTCAAGAG+AGG | + | chr1_1:72198848-72198867 | Msa0041720:CDS | 45.0% |
| ! | TTTCATTCCTTTCTGGAGGG+TGG | - | chr1_1:72198917-72198936 | None:intergenic | 45.0% |
| ACCCTCCAGAAAGGAATGAA+AGG | + | chr1_1:72198916-72198935 | Msa0041720:CDS | 45.0% | |
| GCTTCTCAGGTCTATCTAGA+TGG | - | chr1_1:72198968-72198987 | None:intergenic | 45.0% | |
| ACCTGAGAAGCGAATTGTAG+AGG | + | chr1_1:72198977-72198996 | Msa0041720:CDS | 45.0% | |
| TCCTCTACAATTCGCTTCTC+AGG | - | chr1_1:72198981-72199000 | None:intergenic | 45.0% | |
| AGAAGCGAATTGTAGAGGAC+AGG | + | chr1_1:72198982-72199001 | Msa0041720:CDS | 45.0% | |
| GAAGCGAATTGTAGAGGACA+GGG | + | chr1_1:72198983-72199002 | Msa0041720:CDS | 45.0% | |
| AATCCAACAAGCGAGAACCT+AGG | + | chr1_1:72199006-72199025 | Msa0041720:CDS | 45.0% | |
| GGATGATCAGATTGCAAAGC+TGG | + | chr1_1:72199202-72199221 | Msa0041720:CDS | 45.0% | |
| ! | TCTCTGGAAATTGTCCCACA+TGG | - | chr1_1:72199316-72199335 | None:intergenic | 45.0% |
| GCTAAATTCAGCATAGCACC+TGG | + | chr1_1:72199443-72199462 | Msa0041720:three_prime_UTR | 45.0% | |
| GGGTTATCCCTAATGACAAC+GGG | + | chr1_1:72199519-72199538 | Msa0041720:three_prime_UTR | 45.0% | |
| GGTTATCCCTAATGACAACG+GGG | + | chr1_1:72199520-72199539 | Msa0041720:three_prime_UTR | 45.0% | |
| GTTATCCCTAATGACAACGG+GGG | + | chr1_1:72199521-72199540 | Msa0041720:three_prime_UTR | 45.0% | |
| ATGATCCCCCGTTGTCATTA+GGG | - | chr1_1:72199529-72199548 | None:intergenic | 45.0% | |
| AATGATCCCCCGTTGTCATT+AGG | - | chr1_1:72199530-72199549 | None:intergenic | 45.0% | |
| !!! | ATTTAAATAAAATGATTTTA+CGG | - | chr1_1:72197385-72197404 | None:intergenic | 5.0% |
| !! | TATATATCAATATAAAATTA+AGG | - | chr1_1:72198559-72198578 | None:intergenic | 5.0% |
| CTAAGCTCGATCGTGAACCA+AGG | + | chr1_1:72196699-72196718 | Msa0041720:CDS | 50.0% | |
| !! | CGTAGGTGTTGTTTATCCGC+TGG | + | chr1_1:72197168-72197187 | Msa0041720:intron | 50.0% |
| ! | ATCTGCGGCAGCCACTATTT+TGG | - | chr1_1:72197326-72197345 | None:intergenic | 50.0% |
| GTGAGGCACAATAGCATCTG+CGG | - | chr1_1:72197341-72197360 | None:intergenic | 50.0% | |
| !! | CACGGCCAAATGGCTTTGAA+AGG | - | chr1_1:72197501-72197520 | None:intergenic | 50.0% |
| CTTTCAAAGCCATTTGGCCG+TGG | + | chr1_1:72197499-72197518 | Msa0041720:intron | 50.0% | |
| GCTTGTAGCTACCTACAAGC+TGG | + | chr1_1:72197843-72197862 | Msa0041720:intron | 50.0% | |
| TGCTTTGGCTGTTAACTGCC+TGG | + | chr1_1:72197928-72197947 | Msa0041720:intron | 50.0% | |
| ! | CTACTACAACATGTGGTGGG+TGG | + | chr1_1:72198024-72198043 | Msa0041720:intron | 50.0% |
| ! | GCATATACCGAGGCACTTGA+AGG | - | chr1_1:72198445-72198464 | None:intergenic | 50.0% |
| TGAATGGGGCAATACTGTGC+AGG | + | chr1_1:72198492-72198511 | Msa0041720:CDS | 50.0% | |
| !! | TTGGTCGAAGCACTGGTCAA+AGG | + | chr1_1:72198515-72198534 | Msa0041720:CDS | 50.0% |
| !! | TGGTCGAAGCACTGGTCAAA+GGG | + | chr1_1:72198516-72198535 | Msa0041720:CDS | 50.0% |
| ACTGGTCAAAGGGAAGCTGA+TGG | + | chr1_1:72198526-72198545 | Msa0041720:CDS | 50.0% | |
| TTTACTGTCACTGTCGCAGC+TGG | - | chr1_1:72198879-72198898 | None:intergenic | 50.0% | |
| ! | TTTCTGGAGGGTGGCTAGTA+TGG | - | chr1_1:72198908-72198927 | None:intergenic | 50.0% |
| ATACTAGCCACCCTCCAGAA+AGG | + | chr1_1:72198907-72198926 | Msa0041720:CDS | 50.0% | |
| CTTCCTAGGTTCTCGCTTGT+TGG | - | chr1_1:72199012-72199031 | None:intergenic | 50.0% | |
| CAACAAGCGAGAACCTAGGA+AGG | + | chr1_1:72199010-72199029 | Msa0041720:CDS | 50.0% | |
| AAGCGAGAACCTAGGAAGGA+TGG | + | chr1_1:72199014-72199033 | Msa0041720:CDS | 50.0% | |
| AGAGTAAGGTATGGGGGAAG+TGG | + | chr1_1:72199047-72199066 | Msa0041720:CDS | 50.0% | |
| GGAGGCAATAGCAATCACAG+AGG | + | chr1_1:72199068-72199087 | Msa0041720:CDS | 50.0% | |
| TCTGTTGAGCACTTGAGCTC+TGG | + | chr1_1:72199469-72199488 | Msa0041720:three_prime_UTR | 50.0% | |
| ATGACGACGCTTCGAATCGG+AGG | - | chr1_1:72196678-72196697 | None:intergenic | 55.0% | |
| ! | ACCGAGGCACTTGAAGGCAT+GGG | - | chr1_1:72198439-72198458 | None:intergenic | 55.0% |
| ! | TACCGAGGCACTTGAAGGCA+TGG | - | chr1_1:72198440-72198459 | None:intergenic | 55.0% |
| TGGGGCAATACTGTGCAGGT+TGG | + | chr1_1:72198496-72198515 | Msa0041720:CDS | 55.0% | |
| !!! | GCTGGCCTTTTCCTCACAGA+AGG | - | chr1_1:72198813-72198832 | None:intergenic | 55.0% |
| GTAAGGTATGGGGGAAGTGG+AGG | + | chr1_1:72199050-72199069 | Msa0041720:CDS | 55.0% | |
| CAAGTGCTCAACAGAGACCC+AGG | - | chr1_1:72199464-72199483 | None:intergenic | 55.0% | |
| ! | GTTGAGCACTTGAGCTCTGG+CGG | + | chr1_1:72199472-72199491 | Msa0041720:three_prime_UTR | 55.0% |
| TGCATGCCGCGTTGCAGTCA+GGG | - | chr1_1:72197278-72197297 | None:intergenic | 60.0% | |
| TTGCATGCCGCGTTGCAGTC+AGG | - | chr1_1:72197279-72197298 | None:intergenic | 60.0% | |
| ! | CCGAGGCACTTGAAGGCATG+GGG | - | chr1_1:72198438-72198457 | None:intergenic | 60.0% |
| CCCCATGCCTTCAAGTGCCT+CGG | + | chr1_1:72198435-72198454 | Msa0041720:intron | 60.0% | |
| !! | GTGCAGGTTGGTCGAAGCAC+TGG | + | chr1_1:72198508-72198527 | Msa0041720:CDS | 60.0% |
| AGCGACCCCTGACTGCAACG+CGG | + | chr1_1:72197269-72197288 | Msa0041720:intron | 65.0% | |
| GCATGCCGCGTTGCAGTCAG+GGG | - | chr1_1:72197277-72197296 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72196550 | 72199698 | 72196550 | ID=Msa0041720;Name=Msa0041720 |
| chr1_1 | mRNA | 72196550 | 72199698 | 72196550 | ID=Msa0041720-mRNA-1;Parent=Msa0041720;Name=Msa0041720-mRNA-1;_AED=0.26;_eAED=0.26;_QI=109|0.66|0.75|1|1|1|4|454|277 |
| chr1_1 | exon | 72196550 | 72196720 | 72196550 | ID=Msa0041720-mRNA-1:exon:24020;Parent=Msa0041720-mRNA-1 |
| chr1_1 | exon | 72196818 | 72196947 | 72196818 | ID=Msa0041720-mRNA-1:exon:24021;Parent=Msa0041720-mRNA-1 |
| chr1_1 | exon | 72198487 | 72198547 | 72198487 | ID=Msa0041720-mRNA-1:exon:24022;Parent=Msa0041720-mRNA-1 |
| chr1_1 | exon | 72198664 | 72199698 | 72198664 | ID=Msa0041720-mRNA-1:exon:24023;Parent=Msa0041720-mRNA-1 |
| chr1_1 | five_prime_UTR | 72196550 | 72196658 | 72196550 | ID=Msa0041720-mRNA-1:five_prime_utr;Parent=Msa0041720-mRNA-1 |
| chr1_1 | CDS | 72196659 | 72196720 | 72196659 | ID=Msa0041720-mRNA-1:cds;Parent=Msa0041720-mRNA-1 |
| chr1_1 | CDS | 72196818 | 72196947 | 72196818 | ID=Msa0041720-mRNA-1:cds;Parent=Msa0041720-mRNA-1 |
| chr1_1 | CDS | 72198487 | 72198547 | 72198487 | ID=Msa0041720-mRNA-1:cds;Parent=Msa0041720-mRNA-1 |
| chr1_1 | CDS | 72198664 | 72199244 | 72198664 | ID=Msa0041720-mRNA-1:cds;Parent=Msa0041720-mRNA-1 |
| chr1_1 | three_prime_UTR | 72199245 | 72199698 | 72199245 | ID=Msa0041720-mRNA-1:three_prime_utr;Parent=Msa0041720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
