AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530100 MtrunA17_Chr4g0002301 90.815 577 10 2 1 534 1 577 0.0 1056
Msa0530100 MtrunA17_Chr0c31g0494131 71.041 442 101 1 118 532 5 446 0.0 635
Msa0530100 MtrunA17_Chr4g0071731 61.485 431 141 3 1 408 1 429 0.0 529
Msa0530100 MtrunA17_Chr2g0286021 38.996 518 227 17 71 503 114 627 4.00e-97 307
Msa0530100 MtrunA17_Chr4g0071721 63.253 166 31 1 397 532 33 198 2.74e-63 205
Msa0530100 MtrunA17_Chr1g0187981 31.849 449 253 10 91 501 46 479 4.08e-56 198
Msa0530100 MtrunA17_Chr4g0059431 30.426 470 255 11 94 505 39 494 1.35e-48 177
Msa0530100 MtrunA17_Chr0c31g0494141 36.879 141 64 3 1 118 1 139 6.18e-20 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530100 AT1G51590.1 73.007 552 94 7 1 508 1 541 0.0 782
Msa0530100 AT3G21160.1 69.085 579 121 7 1 532 1 568 0.0 771
Msa0530100 AT1G51590.2 80.320 437 58 2 100 508 1 437 0.0 724
Msa0530100 AT3G21160.2 69.880 415 98 4 1 398 1 405 0.0 565
Msa0530100 AT1G30000.1 39.718 496 212 15 92 503 128 620 3.36e-95 302
Msa0530100 AT1G30000.2 39.718 496 212 15 92 503 148 640 9.58e-95 302
Msa0530100 AT5G43710.3 31.126 453 254 8 91 503 39 473 7.71e-56 197
Msa0530100 AT5G43710.2 31.126 453 254 8 91 503 39 473 8.51e-56 196
Msa0530100 AT5G43710.1 30.921 456 257 8 91 506 39 476 1.39e-55 197
Msa0530100 AT1G27520.1 31.360 456 261 8 91 505 36 480 5.94e-54 192

Find 155 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAATGCACTCAAAATT+TGG 0.175445 4_1:+4098529 None:intergenic
GGTTCCACAAAATAATATTA+AGG 0.181740 4_1:+4098550 None:intergenic
CTTAGTACATACGATCTTTC+AGG 0.182763 4_1:-4102427 Msa0530100:CDS
TCTTGATACACTATACATTA+TGG 0.190941 4_1:-4103155 Msa0530100:CDS
AATAACCGACTTGCATAATT+TGG 0.194478 4_1:-4104024 Msa0530100:intron
ACGGGGAATTTGTTCCATTT+TGG 0.211193 4_1:-4098709 Msa0530100:three_prime_UTR
TGCTCCAGGGATGCTTGCTT+TGG 0.216455 4_1:-4100107 Msa0530100:CDS
ATGAATACTTGCTTAAAGTT+TGG 0.236436 4_1:-4100647 Msa0530100:CDS
CTTCATATCTTGACTAAAAT+AGG 0.245731 4_1:-4098580 Msa0530100:three_prime_UTR
TCCTTTCTGCCACCTATTCT+AGG 0.259317 4_1:+4098809 None:intergenic
AAAACCTTCTGCTGATACTT+TGG 0.271291 4_1:+4101044 None:intergenic
TTTCAAGGGTGAGAGTATTT+TGG 0.274453 4_1:-4101123 Msa0530100:intron
GCTTTGGGATCATCTGGTTA+TGG 0.305745 4_1:-4100091 Msa0530100:CDS
CTCTAGCTGTAAAACTTTAT+AGG 0.313818 4_1:-4100608 Msa0530100:intron
TGAATACTTGCTTAAAGTTT+GGG 0.318324 4_1:-4100646 Msa0530100:CDS
GACAAGTTGATAATGTTATA+AGG 0.323001 4_1:+4102328 None:intergenic
GTCAATAGCTTTGGAGGTCT+TGG 0.324765 4_1:-4103196 Msa0530100:CDS
TTCTCATTTGAGTTCTTAAC+AGG 0.325798 4_1:+4098845 None:intergenic
AATTCCCCGTCTTTGAATCT+TGG 0.329487 4_1:+4098722 None:intergenic
TGAAGGTTCTGACATCTTAC+AGG 0.336158 4_1:+4098684 None:intergenic
TGAGTAGTGGTAGCAGTAAA+TGG 0.338172 4_1:-4105475 Msa0530100:CDS
GCTCCAGGGATGCTTGCTTT+GGG 0.341072 4_1:-4100106 Msa0530100:CDS
GTTCCACAAAATAATATTAA+GGG 0.343574 4_1:+4098551 None:intergenic
TCCCTTCGAGTCAACCTTCC+CGG 0.344813 4_1:+4103606 None:intergenic
CTTGATACACTATACATTAT+GGG 0.345860 4_1:-4103154 Msa0530100:CDS
ACATCTTACAGGCTCCAAAA+TGG 0.350692 4_1:+4098695 None:intergenic
ATCTTGGTATGTCTTGTTGC+CGG 0.354146 4_1:+4099322 None:intergenic
AAACCTTCTGCTGATACTTT+GGG 0.354260 4_1:+4101045 None:intergenic
TTGGGAAGCAATTGTGAAAC+AGG 0.354810 4_1:-4098661 Msa0530100:three_prime_UTR
TTGAATACCCATTCATCTAA+TGG 0.357605 4_1:+4098914 None:intergenic
TATAGAATGCACAGATATAT+AGG 0.370175 4_1:+4098486 None:intergenic
ATGCTTGCTTTGGGATCATC+TGG 0.372484 4_1:-4100097 Msa0530100:CDS
CGCATAGAGTCGGGCTATGT+TGG 0.374873 4_1:-4099260 Msa0530100:CDS
TTCCCTTCTCTGGATATCAA+TGG 0.381049 4_1:+4103546 None:intergenic
CGGTCATTCCATTAGATGAA+TGG 0.381669 4_1:-4098922 Msa0530100:CDS
TCCCTTCTCTGGATATCAAT+GGG 0.384629 4_1:+4103547 None:intergenic
TTGAGTCACTCTTCTACCTT+TGG 0.392975 4_1:-4099352 Msa0530100:CDS
CAGGTCCACTAAAGAGGTCT+TGG 0.393953 4_1:-4103575 Msa0530100:CDS
CATTTGGCGCCATGGGTGAT+AGG 0.398474 4_1:-4100820 Msa0530100:intron
TCCTATCACATTTGGCGCCA+TGG 0.401558 4_1:-4100828 Msa0530100:CDS
GTAATATAGGAAATAGAAAT+AGG 0.404305 4_1:-4098604 Msa0530100:three_prime_UTR
CAGCTGGGTCGCAAACTCTC+TGG 0.407952 4_1:-4102650 Msa0530100:CDS
ATAGGAAGTAATCCATCATC+AGG 0.411882 4_1:+4100887 None:intergenic
CTACAAATGATGAGTAATAT+AGG 0.413146 4_1:-4098617 Msa0530100:three_prime_UTR
GCAACAAGACATACCAAGAT+TGG 0.418963 4_1:-4099319 Msa0530100:CDS
CTGCTGATACTTTGGGTCTC+CGG 0.423512 4_1:+4101052 None:intergenic
AATAAAACATTCCCTGATGA+TGG 0.424362 4_1:-4100899 Msa0530100:CDS
TAAGATGTCAGAACCTTCAT+TGG 0.424861 4_1:-4098680 Msa0530100:three_prime_UTR
TCACCACAATCCAGAGTAGT+AGG 0.425238 4_1:-4102457 Msa0530100:intron
TTGCTTAAAGTTTGGGTACA+AGG 0.427453 4_1:-4100639 Msa0530100:CDS
ACACAGAAGCACACCCTTTG+AGG 0.428655 4_1:-4098892 Msa0530100:CDS
AAAAGTGGTGTCAATAGCTT+TGG 0.429770 4_1:-4103205 Msa0530100:CDS
TTCTACCTTTGGCGCCTAAC+CGG 0.433958 4_1:-4099341 Msa0530100:CDS
GGCTACTCTCCTATCACATT+TGG 0.436591 4_1:-4100836 Msa0530100:CDS
ACCATACCTGTAGTTCATCT+TGG 0.442790 4_1:+4103467 None:intergenic
GAACTAGCGTGCTTTGCTCC+AGG 0.446640 4_1:-4100121 Msa0530100:CDS
ATTATCCAAGACCTCTTTAG+TGG 0.450428 4_1:+4103570 None:intergenic
CAACAAGACATACCAAGATT+GGG 0.450877 4_1:-4099318 Msa0530100:CDS
TCACAATTGCTTCCCAATGA+AGG 0.454499 4_1:+4098667 None:intergenic
GTTTATGTCACTTGCGGAAG+AGG 0.455285 4_1:-4100050 Msa0530100:intron
ATATATTCCAACCCCAATCT+TGG 0.459533 4_1:+4099306 None:intergenic
AAGAGTGACTCAACTGTCTC+TGG 0.462962 4_1:+4099362 None:intergenic
GGTCATTCCATTAGATGAAT+GGG 0.464425 4_1:-4098921 Msa0530100:CDS
AATCCTCATAGTGGAACAAC+AGG 0.466061 4_1:-4100857 Msa0530100:CDS
TAATCTATCTGCAATATCTC+TGG 0.470494 4_1:+4102381 None:intergenic
AAGGTCTGTTAAGTTTGATT+CGG 0.471042 4_1:-4100313 Msa0530100:CDS
GATCCCAAAGCAAGCATCCC+TGG 0.472500 4_1:+4100103 None:intergenic
CAAGGACGTGCACACAATCC+TGG 0.473872 4_1:-4102304 Msa0530100:CDS
GCACACAATCCTGGATGGAC+CGG 0.474244 4_1:-4102295 Msa0530100:CDS
GGTATGTCTTGTTGCCGGTT+AGG 0.474868 4_1:+4099327 None:intergenic
ACTCAACTGTCTCTGGCCTC+AGG 0.476268 4_1:+4099369 None:intergenic
GGCAGAAAGGAAGGTCGGTC+GGG 0.477322 4_1:-4098797 Msa0530100:CDS
AAAGTGCATGATGGCACTGC+CGG 0.479791 4_1:-4103625 Msa0530100:CDS
TAGCCTGTTGTTCCACTATG+AGG 0.480434 4_1:+4100854 None:intergenic
CCTATCACATTTGGCGCCAT+GGG 0.481889 4_1:-4100827 Msa0530100:CDS
GGACGCTTCAAGTAATAAGC+TGG 0.482423 4_1:+4105440 None:intergenic
ATCTATATCAATCCTCATAG+TGG 0.483288 4_1:-4100866 Msa0530100:CDS
CTATAGAAGACAGATACTAT+AGG 0.490465 4_1:-4098468 Msa0530100:three_prime_UTR
AGTGGTGTCAATAGCTTTGG+AGG 0.491088 4_1:-4103202 Msa0530100:CDS
ATAAACTTCTGCGAATCATC+AGG 0.492014 4_1:+4100067 None:intergenic
CTATGAGGATTGATATAGAT+AGG 0.493737 4_1:+4100869 None:intergenic
CCCATGGCGCCAAATGTGAT+AGG 0.494378 4_1:+4100827 None:intergenic
TTCAACCAAGATTCAAAGAC+GGG 0.500517 4_1:-4098727 Msa0530100:three_prime_UTR
CAGATAGATTACTGCCTGCA+TGG 0.503951 4_1:-4102369 Msa0530100:CDS
CCTGCATGGAACACACCTAC+AGG 0.506080 4_1:-4102355 Msa0530100:CDS
CATATATAAGTAAAGGAAGA+TGG 0.506462 4_1:+4100281 None:intergenic
CCTGTAGGTGTGTTCCATGC+AGG 0.506768 4_1:+4102355 None:intergenic
AAGAAGCAATGCTTCATGCT+TGG 0.508050 4_1:-4103516 Msa0530100:CDS
TTCTTACGAGAAATATGCGT+GGG 0.509050 4_1:-4103491 Msa0530100:CDS
AAAAGCATAGCAAGACGCTT+AGG 0.510186 4_1:+4105419 None:intergenic
AAGAACTCTCGCATAGAGTC+GGG 0.510675 4_1:-4099269 Msa0530100:CDS
GTCGGGCTATGTTGGACTAA+AGG 0.512086 4_1:-4099252 Msa0530100:CDS
TCTAATGGAATGACCGAAGA+AGG 0.512329 4_1:+4098929 None:intergenic
AAAGATCGTATGTACTAAGA+AGG 0.512574 4_1:+4102431 None:intergenic
TCCTAGAATAGGTGGCAGAA+AGG 0.513208 4_1:-4098810 Msa0530100:CDS
CACACAATCCTGGATGGACC+GGG 0.515187 4_1:-4102294 Msa0530100:CDS
ATCTCTAAAACAGAGATATG+TGG 0.515657 4_1:-4100349 Msa0530100:intron
CTTCTCACATATATAAGTAA+AGG 0.516300 4_1:+4100274 None:intergenic
TGCTTAAAGTTTGGGTACAA+GGG 0.520166 4_1:-4100638 Msa0530100:CDS
TGGCAGAAAGGAAGGTCGGT+CGG 0.523530 4_1:-4098798 Msa0530100:CDS
AACTAACAGGTCCACTAAAG+AGG 0.528572 4_1:-4103581 Msa0530100:CDS
TCTCTAAAACAGAGATATGT+GGG 0.531080 4_1:-4100348 Msa0530100:intron
ATCTTGACTAAAATAGGTTG+TGG 0.532183 4_1:-4098574 Msa0530100:three_prime_UTR
TTCCTTGTCACAATCCTCAA+AGG 0.532807 4_1:+4098878 None:intergenic
AAACTTACCCCGGTCCATCC+AGG 0.536972 4_1:+4102286 None:intergenic
TGCCGGGAAGGTTGACTCGA+AGG 0.537750 4_1:-4103608 Msa0530100:CDS
TCTTTGAATCTTGGTTGAAG+TGG 0.543277 4_1:+4098731 None:intergenic
TCCTTGTCACAATCCTCAAA+GGG 0.549191 4_1:+4098879 None:intergenic
GGGAGTAGATCAGTGAGTAG+TGG 0.550997 4_1:-4105488 Msa0530100:CDS
AAGTGCATGATGGCACTGCC+GGG 0.556936 4_1:-4103624 Msa0530100:CDS
AAGATGTCAGAACCTTCATT+GGG 0.557909 4_1:-4098679 Msa0530100:three_prime_UTR
CTCACTTCCCAGGTTAACAC+TGG 0.559131 4_1:-4099022 Msa0530100:intron
AACTAGCGTGCTTTGCTCCA+GGG 0.559285 4_1:-4100120 Msa0530100:CDS
AGAATAGGTGGCAGAAAGGA+AGG 0.566046 4_1:-4098806 Msa0530100:CDS
AGACATACCAAGATTGGGGT+TGG 0.568978 4_1:-4099313 Msa0530100:CDS
ACATGAGTGTGGGTACATCA+TGG 0.569922 4_1:-4099397 Msa0530100:CDS
TCCCATTGATATCCAGAGAA+GGG 0.570283 4_1:-4103548 Msa0530100:CDS
TGTTGCCGGTTAGGCGCCAA+AGG 0.570883 4_1:+4099336 None:intergenic
CAATATCTCTGGCTTTGTCA+AGG 0.571901 4_1:+4102392 None:intergenic
GAAGAACTCTCGCATAGAGT+CGG 0.574661 4_1:-4099270 Msa0530100:CDS
GCCGGGAAGGTTGACTCGAA+GGG 0.576993 4_1:-4103607 Msa0530100:CDS
GTGGGGCCAAGATGAACTAC+AGG 0.591162 4_1:-4103473 Msa0530100:intron
ATCCCATTGATATCCAGAGA+AGG 0.596496 4_1:-4103549 Msa0530100:CDS
ATTGCTCTATCTCAAAGGAC+CGG 0.598269 4_1:-4101071 Msa0530100:CDS
ATACATGATTTATGTAACTG+AGG 0.598804 4_1:-4098509 Msa0530100:three_prime_UTR
TCTTACCAAATTATGCAAGT+CGG 0.598941 4_1:+4104019 None:intergenic
ATCTTTCGAAAATGGCGAGA+GGG 0.599552 4_1:-4105508 None:intergenic
AGTTCATTGCTCTATCTCAA+AGG 0.605447 4_1:-4101076 Msa0530100:CDS
GCAGAAGTTTATGTCACTTG+CGG 0.606147 4_1:-4100056 Msa0530100:CDS
AGTGGTTCATCAACTAGTCA+TGG 0.606457 4_1:+4098749 None:intergenic
ATGTTATAAGGAATTCCTGT+AGG 0.608699 4_1:+4102340 None:intergenic
TCATGGTAGAGAAGCATGAA+CGG 0.611540 4_1:+4098766 None:intergenic
ACTTATATATGTGAGAAGAG+TGG 0.613725 4_1:-4100269 Msa0530100:CDS
GACGTGCACACAATCCTGGA+TGG 0.617017 4_1:-4102300 Msa0530100:CDS
ATGTGGGAGAAATCAATGAA+AGG 0.620443 4_1:-4100332 Msa0530100:CDS
AACATTATCAACTTGTCACA+AGG 0.621612 4_1:-4102322 Msa0530100:CDS
GCATGATGGCACTGCCGGGA+AGG 0.623896 4_1:-4103620 Msa0530100:CDS
GAGTCAAATAAAGTGCATGA+TGG 0.624057 4_1:-4103634 Msa0530100:CDS
AGACCCAAAGTATCAGCAGA+AGG 0.635744 4_1:-4101048 Msa0530100:intron
CTTCAACCAAGATTCAAAGA+CGG 0.636333 4_1:-4098728 Msa0530100:three_prime_UTR
ACCCTTTGAGGATTGTGACA+AGG 0.641871 4_1:-4098880 Msa0530100:CDS
TAGGAAGTAATCCATCATCA+GGG 0.641994 4_1:+4100888 None:intergenic
GATGCAAAGTTTCTTTCTCG+CGG 0.643973 4_1:-4098984 Msa0530100:CDS
GTGTTAATACCTATCACCCA+TGG 0.646060 4_1:+4100811 None:intergenic
TAGGTGGCAGAAAGGAAGGT+CGG 0.649075 4_1:-4098802 Msa0530100:CDS
AACAAGACATACCAAGATTG+GGG 0.651954 4_1:-4099317 Msa0530100:CDS
TATATATGTGAGAAGAGTGG+AGG 0.655638 4_1:-4100266 Msa0530100:CDS
GATCTTTCGAAAATGGCGAG+AGG 0.677971 4_1:-4105509 None:intergenic
GATTGTGACAAGGAACGAAG+CGG 0.686601 4_1:-4098870 Msa0530100:CDS
ACACAATCCTGGATGGACCG+GGG 0.694750 4_1:-4102293 Msa0530100:intron
CCACAATCCAGAGTAGTAGG+TGG 0.698751 4_1:-4102454 Msa0530100:intron
GTTCTTACGAGAAATATGCG+TGG 0.702505 4_1:-4103492 Msa0530100:CDS
TCTTACGAGAAATATGCGTG+GGG 0.740661 4_1:-4103490 Msa0530100:CDS
GTACATCATGGAACATCCTG+AGG 0.744218 4_1:-4099385 Msa0530100:CDS
TCAACCAAGATTCAAAGACG+GGG 0.745743 4_1:-4098726 Msa0530100:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAAAGAACATTAAAA+CGG + chr4_1:4099297-4099316 None:intergenic 10.0%
!!! GAAATTATTTTTGATTTTTT+TGG - chr4_1:4099811-4099830 Msa0530100:intron 10.0%
!!! ATTTTTTATTATTTTTCCTT+TGG - chr4_1:4100253-4100272 Msa0530100:CDS 10.0%
!!! TTTTTTATTATTTTTCCTTT+GGG - chr4_1:4100254-4100273 Msa0530100:CDS 10.0%
!!! GTTTATTATACTTTTTTAAT+TGG + chr4_1:4101403-4101422 None:intergenic 10.0%
!! ATTAGAATAAAAGTTAAAAT+TGG + chr4_1:4102719-4102738 None:intergenic 10.0%
!!! CATATATTCATTTTTTTTTA+CGG - chr4_1:4102933-4102952 Msa0530100:intron 10.0%
!!! ATATATTCATTTTTTTTTAC+GGG - chr4_1:4102934-4102953 Msa0530100:intron 10.0%
!!! TAACTGTTTTTATTAAATAC+AGG - chr4_1:4099870-4099889 Msa0530100:intron 15.0%
!!! TTCTTTTCATTGTTATTTAT+TGG + chr4_1:4100032-4100051 None:intergenic 15.0%
!! AATAAATAACAATGAAAAGA+AGG - chr4_1:4100031-4100050 Msa0530100:intron 15.0%
!!! TTTTTATTATTTTTCCTTTG+GGG - chr4_1:4100255-4100274 Msa0530100:CDS 15.0%
!!! GTTGTTTCTAATATTATATT+TGG - chr4_1:4100932-4100951 Msa0530100:intron 15.0%
!!! TAATGTAACTTTTATGAATT+AGG + chr4_1:4101170-4101189 None:intergenic 15.0%
!!! TTATACTTTTTTAATTGGAA+GGG + chr4_1:4101398-4101417 None:intergenic 15.0%
!!! ATTATACTTTTTTAATTGGA+AGG + chr4_1:4101399-4101418 None:intergenic 15.0%
!! CGTAAAAAAAAATGAATATA+TGG + chr4_1:4102935-4102954 None:intergenic 15.0%
!!! TATATTCATTTTTTTTTACG+GGG - chr4_1:4102935-4102954 Msa0530100:intron 15.0%
!!! TTTTAGAGATTAAAAAGAAA+TGG + chr4_1:4103583-4103602 None:intergenic 15.0%
!! TTTATTCTCTGATATACTAT+CGG - chr4_1:4098762-4098781 Msa0530100:three_prime_UTR 20.0%
!! TAGTAATATCAAATCAGTAT+AGG + chr4_1:4098901-4098920 None:intergenic 20.0%
!!! ATACTGATTTGATATTACTA+AGG - chr4_1:4098901-4098920 Msa0530100:CDS 20.0%
!! CTTGTACAATAGATTAAAAA+TGG + chr4_1:4099609-4099628 None:intergenic 20.0%
!!! AAGTGTAACTTTATTTTTAG+AGG - chr4_1:4099782-4099801 Msa0530100:intron 20.0%
!!! AGTGTAACTTTATTTTTAGA+GGG - chr4_1:4099783-4099802 Msa0530100:intron 20.0%
!! TAATAAAAACAGTTATCTAC+TGG + chr4_1:4099865-4099884 None:intergenic 20.0%
!!! AATGATATGGAATGTTTTTA+AGG + chr4_1:4100001-4100020 None:intergenic 20.0%
!! ATTGGAAAAATGAAATGATA+TGG + chr4_1:4100014-4100033 None:intergenic 20.0%
!!! TTTTATTATTTTTCCTTTGG+GGG - chr4_1:4100256-4100275 Msa0530100:CDS 20.0%
!!! CAATAAAACAAAAAAGTACA+AGG + chr4_1:4100524-4100543 None:intergenic 20.0%
!! TCTAATATTATATTTGGCAA+AGG - chr4_1:4100938-4100957 Msa0530100:intron 20.0%
!! TATAATAAACTTAACTTACG+TGG - chr4_1:4101413-4101432 Msa0530100:intron 20.0%
!!! AGTACTATATTTTGTTCAAA+AGG + chr4_1:4101893-4101912 None:intergenic 20.0%
!!! TTGAATGTGTTTTTAATAGA+AGG - chr4_1:4101950-4101969 Msa0530100:intron 20.0%
!!! TTTTTGTTTTTATTGACTAC+TGG + chr4_1:4101996-4102015 None:intergenic 20.0%
!! AAAAGATAATCATGAAAACA+TGG + chr4_1:4102084-4102103 None:intergenic 20.0%
!!! TTTTCAAATAAACGTAGAAT+AGG - chr4_1:4103509-4103528 Msa0530100:CDS 20.0%
!! TCAATGGTAAATATTAAATG+CGG + chr4_1:4103748-4103767 None:intergenic 20.0%
!! AATATTTACCATTGATGTAT+TGG - chr4_1:4103753-4103772 Msa0530100:intron 20.0%
!!! TTATCTTTTGCTATAGAAAT+AGG + chr4_1:4104083-4104102 None:intergenic 20.0%
!! AAATTGTTTCCATTTATAAG+CGG - chr4_1:4104112-4104131 Msa0530100:intron 20.0%
!!! TTACTTTTTCTTTTTTTGAC+AGG - chr4_1:4104442-4104461 Msa0530100:intron 20.0%
!!! AAATTTACTTCTGCATTTTA+AGG - chr4_1:4104522-4104541 Msa0530100:intron 20.0%
!! CATTATTAAATGTGAAATTG+AGG + chr4_1:4104727-4104746 None:intergenic 20.0%
!! GTAATATAGGAAATAGAAAT+AGG - chr4_1:4105338-4105357 Msa0530100:intron 20.0%
!! GTTCCACAAAATAATATTAA+GGG + chr4_1:4105394-4105413 None:intergenic 20.0%
!! TTTCGGTTTCTTTTATTGTT+TGG - chr4_1:4098557-4098576 Msa0530100:three_prime_UTR 25.0%
!! TTCGGTTTCTTTTATTGTTT+GGG - chr4_1:4098558-4098577 Msa0530100:three_prime_UTR 25.0%
!!! TTTTGTTTCAATTCTGTGTT+TGG - chr4_1:4098645-4098664 Msa0530100:three_prime_UTR 25.0%
! ATCATATAGGATTTGTAAGA+AGG - chr4_1:4098826-4098845 Msa0530100:CDS 25.0%
! TTTGATATTACTAAGGAGTA+AGG - chr4_1:4098908-4098927 Msa0530100:CDS 25.0%
!! TAGGTTTATGATTTTTCACT+TGG - chr4_1:4098976-4098995 Msa0530100:CDS 25.0%
!! AGGTTTATGATTTTTCACTT+GGG - chr4_1:4098977-4098996 Msa0530100:CDS 25.0%
! ATTGATATTGTTCTGTGATA+AGG - chr4_1:4099065-4099084 Msa0530100:intron 25.0%
! TTACATTCAATTATTACCGA+TGG + chr4_1:4099385-4099404 None:intergenic 25.0%
!! TAATATAGCAGTGATACTTT+TGG - chr4_1:4099511-4099530 Msa0530100:intron 25.0%
! GTATTCTATAACTACCAATT+TGG + chr4_1:4099678-4099697 None:intergenic 25.0%
! GTAGTTATAGAATACTACAA+CGG - chr4_1:4099683-4099702 Msa0530100:intron 25.0%
! AAACTTTGTAGCATATATTG+TGG - chr4_1:4099726-4099745 Msa0530100:intron 25.0%
! AACTTTGTAGCATATATTGT+GGG - chr4_1:4099727-4099746 Msa0530100:intron 25.0%
! TTTATTGCATGATGATCTAA+TGG - chr4_1:4100537-4100556 Msa0530100:intron 25.0%
! GAATGGTACATGATATAAAT+TGG - chr4_1:4100620-4100639 Msa0530100:CDS 25.0%
! TCTTGATACACTATACATTA+TGG - chr4_1:4100787-4100806 Msa0530100:intron 25.0%
! CTTGATACACTATACATTAT+GGG - chr4_1:4100788-4100807 Msa0530100:intron 25.0%
! ATGATTCTAAATGAGTATAG+AGG + chr4_1:4100903-4100922 None:intergenic 25.0%
!! ATCTAGAACAGCAATAAAAT+TGG + chr4_1:4101023-4101042 None:intergenic 25.0%
!!! GTTATAGTGTTTAACTTGTA+TGG - chr4_1:4101055-4101074 Msa0530100:CDS 25.0%
!!! ACAAGTTTTGTTTTTTGACA+AGG + chr4_1:4101085-4101104 None:intergenic 25.0%
! GTCAAAAAACAAAACTTGTA+TGG - chr4_1:4101086-4101105 Msa0530100:CDS 25.0%
! AAATGTAATAAAGCCTAACT+AGG + chr4_1:4101246-4101265 None:intergenic 25.0%
!! AACCATAAGGTTACTTTATA+AGG - chr4_1:4101352-4101371 Msa0530100:intron 25.0%
! AACCTTATAAAGTAACCTTA+TGG + chr4_1:4101357-4101376 None:intergenic 25.0%
!!! GACAAGTTGATAATGTTATA+AGG + chr4_1:4101617-4101636 None:intergenic 25.0%
! TTGTAGTTAACTTAACATTG+AGG + chr4_1:4101754-4101773 None:intergenic 25.0%
!! TTTCATGATTATCTTTTGCT+TGG - chr4_1:4102087-4102106 Msa0530100:intron 25.0%
! CATTTCCATATTTGTATTAG+AGG - chr4_1:4102223-4102242 Msa0530100:intron 25.0%
!!! TTTTTGCCTTCATTTTTCAA+GGG - chr4_1:4102805-4102824 Msa0530100:intron 25.0%
! CATCTTATTCTGTGTTAATT+TGG - chr4_1:4103239-4103258 Msa0530100:intron 25.0%
! GTATTCATAAAAACTGCAAT+TGG + chr4_1:4103283-4103302 None:intergenic 25.0%
! ATGAATACTTGCTTAAAGTT+TGG - chr4_1:4103295-4103314 Msa0530100:intron 25.0%
! TGAATACTTGCTTAAAGTTT+GGG - chr4_1:4103296-4103315 Msa0530100:intron 25.0%
! TGTATAAAACATGATGAAGT+AGG + chr4_1:4103376-4103395 None:intergenic 25.0%
! ATAATTCTTTCATTGATCCA+AGG + chr4_1:4103441-4103460 None:intergenic 25.0%
! CATATATAAGTAAAGGAAGA+TGG + chr4_1:4103664-4103683 None:intergenic 25.0%
! CTTCTCACATATATAAGTAA+AGG + chr4_1:4103671-4103690 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+TGG + chr4_1:4104004-4104023 None:intergenic 25.0%
! TTATGAAAACCGCTTATAAA+TGG + chr4_1:4104124-4104143 None:intergenic 25.0%
! AAATACATGTAGAGTAAGTT+TGG + chr4_1:4104274-4104293 None:intergenic 25.0%
!! AGAACTATTTCTTTCATTCT+GGG - chr4_1:4104411-4104430 Msa0530100:intron 25.0%
!!! TTTTTCTTTTTTTGACAGGA+AGG - chr4_1:4104446-4104465 Msa0530100:intron 25.0%
! GATGCACATAGTATTAATTT+GGG + chr4_1:4104867-4104886 None:intergenic 25.0%
! TGATGCACATAGTATTAATT+TGG + chr4_1:4104868-4104887 None:intergenic 25.0%
!! CAAAAATCTTTTCCTAGAAT+AGG - chr4_1:4105121-4105140 Msa0530100:intron 25.0%
! CTACAAATGATGAGTAATAT+AGG - chr4_1:4105325-4105344 Msa0530100:intron 25.0%
! CTTCATATCTTGACTAAAAT+AGG - chr4_1:4105362-4105381 Msa0530100:intron 25.0%
! GGTTCCACAAAATAATATTA+AGG + chr4_1:4105395-4105414 None:intergenic 25.0%
! TATGAAATGCACTCAAAATT+TGG + chr4_1:4105416-4105435 None:intergenic 25.0%
! ATACATGATTTATGTAACTG+AGG - chr4_1:4105433-4105452 Msa0530100:CDS 25.0%
! TATAGAATGCACAGATATAT+AGG + chr4_1:4105459-4105478 None:intergenic 25.0%
CAAATGAAGAAATACATACC+TGG + chr4_1:4098609-4098628 None:intergenic 30.0%
CTAGTGTTCATAGATCATAT+AGG - chr4_1:4098813-4098832 Msa0530100:CDS 30.0%
ATAGGATTTGTAAGAAGGAA+AGG - chr4_1:4098831-4098850 Msa0530100:CDS 30.0%
AAACTAAGAGCTAATCCAAA+TGG + chr4_1:4098935-4098954 None:intergenic 30.0%
!! TTGGATTAGCTCTTAGTTTA+TGG - chr4_1:4098936-4098955 Msa0530100:CDS 30.0%
!! TGGATTAGCTCTTAGTTTAT+GGG - chr4_1:4098937-4098956 Msa0530100:CDS 30.0%
! GGTTTATGATTTTTCACTTG+GGG - chr4_1:4098978-4098997 Msa0530100:CDS 30.0%
TTGTTAAATAGAGGCTATGA+TGG - chr4_1:4099007-4099026 Msa0530100:CDS 30.0%
TACAAGATAATGAGTAGTTG+TGG - chr4_1:4099623-4099642 Msa0530100:intron 30.0%
TAACTACCAATTTGGTTGTT+TGG + chr4_1:4099670-4099689 None:intergenic 30.0%
!! TTTTTGGCACTTGAATAACT+TGG - chr4_1:4099827-4099846 Msa0530100:intron 30.0%
!! AATAACCGACTTGCATAATT+TGG - chr4_1:4099918-4099937 Msa0530100:intron 30.0%
TCTTACCAAATTATGCAAGT+CGG + chr4_1:4099926-4099945 None:intergenic 30.0%
AATGAAAAGAAGGAATGAGA+TGG - chr4_1:4100041-4100060 Msa0530100:intron 30.0%
! TTTTCAATCAGTACGAAAGT+AGG + chr4_1:4100098-4100117 None:intergenic 30.0%
! TAATTTTGTGCCAGATTGAT+TGG + chr4_1:4100144-4100163 None:intergenic 30.0%
ACTGATTGTATGTTCTTGAA+TGG - chr4_1:4100603-4100622 Msa0530100:intron 30.0%
AGCAAAAAACAATAACAACC+AGG + chr4_1:4100876-4100895 None:intergenic 30.0%
ATTCTAAATGAGTATAGAGG+TGG + chr4_1:4100900-4100919 None:intergenic 30.0%
! TGTTCTAGATGAACATTTCA+TGG - chr4_1:4101033-4101052 Msa0530100:intron 30.0%
GCAGCAATAAAGAGTTAAAT+AGG + chr4_1:4101140-4101159 None:intergenic 30.0%
!! AAACTCTCTGGATTTTAACA+AGG - chr4_1:4101304-4101323 Msa0530100:intron 30.0%
AAAGATCGTATGTACTAAGA+AGG + chr4_1:4101514-4101533 None:intergenic 30.0%
TAATCTATCTGCAATATCTC+TGG + chr4_1:4101564-4101583 None:intergenic 30.0%
ATGTTATAAGGAATTCCTGT+AGG + chr4_1:4101605-4101624 None:intergenic 30.0%
AACATTATCAACTTGTCACA+AGG - chr4_1:4101620-4101639 Msa0530100:intron 30.0%
ATATTGCTTTCATGTTCCAT+AGG - chr4_1:4101728-4101747 Msa0530100:intron 30.0%
GACACAAAAGTTGTAAACAA+TGG + chr4_1:4101778-4101797 None:intergenic 30.0%
! TACAACTTTTGTGTCCATAA+AGG - chr4_1:4101783-4101802 Msa0530100:intron 30.0%
!! AAGCTTTAAGGTTAAGATCA+AGG + chr4_1:4101830-4101849 None:intergenic 30.0%
TTGATCTTAACCTTAAAGCT+TGG - chr4_1:4101829-4101848 Msa0530100:intron 30.0%
!!! TTGTTTTTATTGACTACTGG+AGG + chr4_1:4101993-4102012 None:intergenic 30.0%
TAGACATGAAAAAACAATGC+AGG - chr4_1:4102130-4102149 Msa0530100:intron 30.0%
AGACATGAAAAAACAATGCA+GGG - chr4_1:4102131-4102150 Msa0530100:intron 30.0%
TGATCAATACTTAGCAAGAA+AGG + chr4_1:4102158-4102177 None:intergenic 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - chr4_1:4102391-4102410 Msa0530100:CDS 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - chr4_1:4102391-4102410 Msa0530100:CDS 30.0%
TTAATCATGTCACGAAAAAC+GGG + chr4_1:4102696-4102715 None:intergenic 30.0%
GTTAATCATGTCACGAAAAA+CGG + chr4_1:4102697-4102716 None:intergenic 30.0%
! TAATTTTGTATTCCTGACTC+TGG - chr4_1:4102735-4102754 Msa0530100:intron 30.0%
CTTGAAAAATGAAGGCAAAA+AGG + chr4_1:4102806-4102825 None:intergenic 30.0%
!! CTTTTTGCCTTCATTTTTCA+AGG - chr4_1:4102804-4102823 Msa0530100:intron 30.0%
!!! TTCATTTTTTTTTACGGGGA+AGG - chr4_1:4102939-4102958 Msa0530100:intron 30.0%
!!! TCATTTTTTTTTACGGGGAA+GGG - chr4_1:4102940-4102959 Msa0530100:intron 30.0%
AATAAAACATTCCCTGATGA+TGG - chr4_1:4103043-4103062 Msa0530100:intron 30.0%
CTATGAGGATTGATATAGAT+AGG + chr4_1:4103076-4103095 None:intergenic 30.0%
ATCTATATCAATCCTCATAG+TGG - chr4_1:4103076-4103095 Msa0530100:intron 30.0%
! GCTTTTATCGTGTAAAAAGA+TGG + chr4_1:4103167-4103186 None:intergenic 30.0%
TTCTTTAGTTAGTACTGTCT+GGG - chr4_1:4103199-4103218 Msa0530100:CDS 30.0%
CTCTAGCTGTAAAACTTTAT+AGG - chr4_1:4103334-4103353 Msa0530100:intron 30.0%
ATAAAACATGATGAAGTAGG+TGG + chr4_1:4103373-4103392 None:intergenic 30.0%
TCATTTGAATGATAGTTCCT+TGG - chr4_1:4103421-4103440 Msa0530100:intron 30.0%
!! ATCTCTAAAACAGAGATATG+TGG - chr4_1:4103593-4103612 Msa0530100:CDS 30.0%
!! TCTCTAAAACAGAGATATGT+GGG - chr4_1:4103594-4103613 Msa0530100:CDS 30.0%
AAGGTCTGTTAAGTTTGATT+CGG - chr4_1:4103629-4103648 Msa0530100:CDS 30.0%
ACTTATATATGTGAGAAGAG+TGG - chr4_1:4103673-4103692 Msa0530100:intron 30.0%
ACTTTCATCCAATACATCAA+TGG + chr4_1:4103764-4103783 None:intergenic 30.0%
! CATGGCTTTTGTATATTGAT+AGG + chr4_1:4103986-4104005 None:intergenic 30.0%
CAATATACAAAAGCCATGTT+TGG - chr4_1:4103988-4104007 Msa0530100:intron 30.0%
!! CTAACACAAAAGCATTTACA+TGG + chr4_1:4104053-4104072 None:intergenic 30.0%
ACTTAATTGAACTAATCGAC+TGG + chr4_1:4104247-4104266 None:intergenic 30.0%
GTATGACAACTTCATAAAGA+CGG + chr4_1:4104316-4104335 None:intergenic 30.0%
!! CTAATTTTGTTGGAGTTGAT+TGG + chr4_1:4104385-4104404 None:intergenic 30.0%
! GAGAACTATTTCTTTCATTC+TGG - chr4_1:4104410-4104429 Msa0530100:intron 30.0%
! GAACTATTTCTTTCATTCTG+GGG - chr4_1:4104412-4104431 Msa0530100:intron 30.0%
!!! AGACTTTTTTTTTGCCAAAG+TGG + chr4_1:4104803-4104822 None:intergenic 30.0%
TTGAATACCCATTCATCTAA+TGG + chr4_1:4105031-4105050 None:intergenic 30.0%
! TTCTCATTTGAGTTCTTAAC+AGG + chr4_1:4105100-4105119 None:intergenic 30.0%
! AAATCTTTTCCTAGAATAGG+TGG - chr4_1:4105124-4105143 Msa0530100:intron 30.0%
ATCTTGACTAAAATAGGTTG+TGG - chr4_1:4105368-4105387 Msa0530100:intron 30.0%
!! TGGCCCTTAATATTATTTTG+TGG - chr4_1:4105388-4105407 Msa0530100:intron 30.0%
CTATAGAAGACAGATACTAT+AGG - chr4_1:4105474-4105493 Msa0530100:CDS 30.0%
! GCTTTTCATCGTTTTCGTTT+CGG - chr4_1:4098540-4098559 Msa0530100:three_prime_UTR 35.0%
AACTTTAGTCAGAGAATACC+AGG - chr4_1:4098588-4098607 Msa0530100:three_prime_UTR 35.0%
TTATCAACACCTCTGATCAA+AGG - chr4_1:4098682-4098701 Msa0530100:three_prime_UTR 35.0%
GGGTGCTTCTTAGATAAAAT+AGG - chr4_1:4098957-4098976 Msa0530100:CDS 35.0%
! GGGATAGTGTTGTTAAATAG+AGG - chr4_1:4098998-4099017 Msa0530100:CDS 35.0%
AGTTATTGCCTATGAAGCAT+TGG - chr4_1:4099316-4099335 Msa0530100:CDS 35.0%
TGATATTGACATGTGACCAT+CGG - chr4_1:4099366-4099385 Msa0530100:CDS 35.0%
!! TCTCTTTCAGAAGTACTTCT+TGG - chr4_1:4099482-4099501 Msa0530100:intron 35.0%
!! CTCTTTCAGAAGTACTTCTT+GGG - chr4_1:4099483-4099502 Msa0530100:intron 35.0%
! TATAGCAGTGATACTTTTGG+AGG - chr4_1:4099514-4099533 Msa0530100:intron 35.0%
CGTAAATGCACAATTGAGTA+TGG - chr4_1:4099542-4099561 Msa0530100:intron 35.0%
GTTATAGAATACTACAACGG+CGG - chr4_1:4099686-4099705 Msa0530100:intron 35.0%
TTATAGAATACTACAACGGC+GGG - chr4_1:4099687-4099706 Msa0530100:intron 35.0%
!! AGGAAGTGTTCACTTGATAA+TGG + chr4_1:4100180-4100199 None:intergenic 35.0%
ATTCAAATAAGAACTCTGCC+CGG + chr4_1:4100216-4100235 None:intergenic 35.0%
GCAATTGGAATTGTTTCAGT+TGG - chr4_1:4100283-4100302 Msa0530100:CDS 35.0%
GAGTCAAATAAAGTGCATGA+TGG - chr4_1:4100308-4100327 Msa0530100:CDS 35.0%
ATTATCCAAGACCTCTTTAG+TGG + chr4_1:4100375-4100394 None:intergenic 35.0%
!!! CTTTTACTTTTTCCCTTCTC+TGG + chr4_1:4100409-4100428 None:intergenic 35.0%
TTCTTACGAGAAATATGCGT+GGG - chr4_1:4100451-4100470 Msa0530100:intron 35.0%
AATGGAGTGATGTGGTTATT+TGG - chr4_1:4100555-4100574 Msa0530100:intron 35.0%
! AAAAGTGGTGTCAATAGCTT+TGG - chr4_1:4100737-4100756 Msa0530100:intron 35.0%
AAAAGGTTACACTTACTCTC+GGG + chr4_1:4100837-4100856 None:intergenic 35.0%
GAAAAGGTTACACTTACTCT+CGG + chr4_1:4100838-4100857 None:intergenic 35.0%
CAATTGTGATACTCCTAGTT+AGG - chr4_1:4101230-4101249 Msa0530100:intron 35.0%
TAATACATTATCCTGACAGC+TGG - chr4_1:4101276-4101295 Msa0530100:intron 35.0%
AATACATTATCCTGACAGCT+GGG - chr4_1:4101277-4101296 Msa0530100:intron 35.0%
CTTAGTACATACGATCTTTC+AGG - chr4_1:4101515-4101534 Msa0530100:intron 35.0%
TAACTTAACATTGAGGCCTA+TGG + chr4_1:4101747-4101766 None:intergenic 35.0%
ACCTTAAAGCTTGGATATTG+TGG - chr4_1:4101838-4101857 Msa0530100:intron 35.0%
CTGCTTTCTAATGTTATTCG+TGG - chr4_1:4102187-4102206 Msa0530100:intron 35.0%
CCATGCCTCTAATACAAATA+TGG + chr4_1:4102231-4102250 None:intergenic 35.0%
CCATATTTGTATTAGAGGCA+TGG - chr4_1:4102228-4102247 Msa0530100:intron 35.0%
!! ACGAGAGTATGATTTGTTAG+CGG - chr4_1:4102324-4102343 Msa0530100:CDS 35.0%
GAATCCTATCTATCTGATGT+GGG + chr4_1:4102372-4102391 None:intergenic 35.0%
AGAATCCTATCTATCTGATG+TGG + chr4_1:4102373-4102392 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG - chr4_1:4102394-4102413 Msa0530100:CDS 35.0%
TGATACCATGTCACGAAAAT+CGG + chr4_1:4102464-4102483 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG - chr4_1:4102394-4102413 Msa0530100:CDS 35.0%
CTAACTCATCCTTACAAAAC+AGG + chr4_1:4102438-4102457 None:intergenic 35.0%
! CTGTTTTGTAAGGATGAGTT+AGG - chr4_1:4102669-4102688 Msa0530100:intron 35.0%
TAATCATGTCACGAAAAACG+GGG + chr4_1:4102695-4102714 None:intergenic 35.0%
GGAATCAGAAACTCATAAAG+CGG + chr4_1:4102785-4102804 None:intergenic 35.0%
!!! TTTCAAGGGTGAGAGTATTT+TGG - chr4_1:4102819-4102838 Msa0530100:intron 35.0%
AGTTCATTGCTCTATCTCAA+AGG - chr4_1:4102866-4102885 Msa0530100:intron 35.0%
AAACCTTCTGCTGATACTTT+GGG + chr4_1:4102900-4102919 None:intergenic 35.0%
AAAACCTTCTGCTGATACTT+TGG + chr4_1:4102901-4102920 None:intergenic 35.0%
!!! CATTTTTTTTTACGGGGAAG+GGG - chr4_1:4102941-4102960 Msa0530100:intron 35.0%
!!! ATTTTTTTTTACGGGGAAGG+GGG - chr4_1:4102942-4102961 Msa0530100:intron 35.0%
ATTCTCAACCTGAAAAAGCA+GGG + chr4_1:4103008-4103027 None:intergenic 35.0%
TAGGAAGTAATCCATCATCA+GGG + chr4_1:4103057-4103076 None:intergenic 35.0%
ATAGGAAGTAATCCATCATC+AGG + chr4_1:4103058-4103077 None:intergenic 35.0%
CTTCTTTAGTTAGTACTGTC+TGG - chr4_1:4103198-4103217 Msa0530100:CDS 35.0%
TTGCTTAAAGTTTGGGTACA+AGG - chr4_1:4103303-4103322 Msa0530100:intron 35.0%
TGCTTAAAGTTTGGGTACAA+GGG - chr4_1:4103304-4103323 Msa0530100:intron 35.0%
ATGTGGGAGAAATCAATGAA+AGG - chr4_1:4103610-4103629 Msa0530100:CDS 35.0%
TATATATGTGAGAAGAGTGG+AGG - chr4_1:4103676-4103695 Msa0530100:intron 35.0%
ATGATTCTGCATTGCAATAC+TGG - chr4_1:4103717-4103736 Msa0530100:intron 35.0%
ATAAACTTCTGCGAATCATC+AGG + chr4_1:4103878-4103897 None:intergenic 35.0%
! GCACATTAAGGCTTTTCAAA+TGG + chr4_1:4103931-4103950 None:intergenic 35.0%
TCAACAGAACAAGCACATTA+AGG + chr4_1:4103943-4103962 None:intergenic 35.0%
! GCGGTTTTCATAAACTATCA+CGG - chr4_1:4104131-4104150 Msa0530100:intron 35.0%
TAAACACTTGTGAGATGGTT+TGG + chr4_1:4104222-4104241 None:intergenic 35.0%
TCAACTCCAACAAAATTAGC+TGG - chr4_1:4104386-4104405 Msa0530100:intron 35.0%
! TTCTCTCCAGCTAATTTTGT+TGG + chr4_1:4104395-4104414 None:intergenic 35.0%
!!! TTCTTTTTTTGACAGGAAGG+AGG - chr4_1:4104449-4104468 Msa0530100:intron 35.0%
!! CATTTTAAGGACATGAGTGT+GGG - chr4_1:4104535-4104554 Msa0530100:intron 35.0%
CAACAAGACATACCAAGATT+GGG - chr4_1:4104624-4104643 Msa0530100:intron 35.0%
AACAAGACATACCAAGATTG+GGG - chr4_1:4104625-4104644 Msa0530100:intron 35.0%
ATATATTCCAACCCCAATCT+TGG + chr4_1:4104639-4104658 None:intergenic 35.0%
TACTCTCTTTGTCCCATATT+GGG - chr4_1:4104775-4104794 Msa0530100:intron 35.0%
TTTAACACCAGTGTTAACCT+GGG + chr4_1:4104930-4104949 None:intergenic 35.0%
GGTCATTCCATTAGATGAAT+GGG - chr4_1:4105021-4105040 Msa0530100:intron 35.0%
TCTTTGAATCTTGGTTGAAG+TGG + chr4_1:4105214-4105233 None:intergenic 35.0%
CTTCAACCAAGATTCAAAGA+CGG - chr4_1:4105214-4105233 Msa0530100:intron 35.0%
TTCAACCAAGATTCAAAGAC+GGG - chr4_1:4105215-4105234 Msa0530100:intron 35.0%
TAAGATGTCAGAACCTTCAT+TGG - chr4_1:4105262-4105281 Msa0530100:intron 35.0%
AAGATGTCAGAACCTTCATT+GGG - chr4_1:4105263-4105282 Msa0530100:intron 35.0%
TGAGTAGTGGTAGCAGTAAA+TGG - chr4_1:4098467-4098486 Msa0530100:three_prime_UTR 40.0%
! AAAAGCATAGCAAGACGCTT+AGG + chr4_1:4098526-4098545 None:intergenic 40.0%
TCTCTGATATACTATCGGTG+TGG - chr4_1:4098767-4098786 Msa0530100:three_prime_UTR 40.0%
ACTAAGGAGTAAGGACCATT+TGG - chr4_1:4098917-4098936 Msa0530100:CDS 40.0%
!! TGTGTAGCTTTGTTGTGTAG+CGG - chr4_1:4099119-4099138 Msa0530100:intron 40.0%
CTATCGCAGATCACAGAAAA+TGG + chr4_1:4099160-4099179 None:intergenic 40.0%
ACCGATGAATGAGAGAACTT+CGG - chr4_1:4099229-4099248 Msa0530100:intron 40.0%
TCCGAAGTTCTCTCATTCAT+CGG + chr4_1:4099233-4099252 None:intergenic 40.0%
ATTGGCACAGACAAGTACAT+CGG - chr4_1:4099334-4099353 Msa0530100:CDS 40.0%
CTTCATATTGCAGGTACATC+TGG + chr4_1:4099426-4099445 None:intergenic 40.0%
!! TTCAGAAGTACTTCTTGGGA+AGG - chr4_1:4099487-4099506 Msa0530100:intron 40.0%
ATGCACAATTGAGTATGGTG+TGG - chr4_1:4099547-4099566 Msa0530100:intron 40.0%
TGTGGCTGAAATCAGACTAT+AGG - chr4_1:4099565-4099584 Msa0530100:intron 40.0%
TCAGACTATAGGTCGAGAAT+AGG - chr4_1:4099576-4099595 Msa0530100:intron 40.0%
CAGACTATAGGTCGAGAATA+GGG - chr4_1:4099577-4099596 Msa0530100:intron 40.0%
TTCCTGCCAAACAACCAAAT+TGG - chr4_1:4099661-4099680 Msa0530100:intron 40.0%
TACCAATTTGGTTGTTTGGC+AGG + chr4_1:4099666-4099685 None:intergenic 40.0%
AATCAGTACGAAAGTAGGAG+TGG + chr4_1:4100093-4100112 None:intergenic 40.0%
ATCAAGTGAACACTTCCTTG+TGG - chr4_1:4100182-4100201 Msa0530100:intron 40.0%
ACTCGAAGGGAAAAACTAAC+AGG - chr4_1:4100348-4100367 Msa0530100:intron 40.0%
AACTAACAGGTCCACTAAAG+AGG - chr4_1:4100361-4100380 Msa0530100:intron 40.0%
ATCCCATTGATATCCAGAGA+AGG - chr4_1:4100393-4100412 Msa0530100:intron 40.0%
TCCCATTGATATCCAGAGAA+GGG - chr4_1:4100394-4100413 Msa0530100:intron 40.0%
TCCCTTCTCTGGATATCAAT+GGG + chr4_1:4100398-4100417 None:intergenic 40.0%
TTCCCTTCTCTGGATATCAA+TGG + chr4_1:4100399-4100418 None:intergenic 40.0%
AAGAAGCAATGCTTCATGCT+TGG - chr4_1:4100426-4100445 Msa0530100:intron 40.0%
GTTCTTACGAGAAATATGCG+TGG - chr4_1:4100450-4100469 Msa0530100:intron 40.0%
TCTTACGAGAAATATGCGTG+GGG - chr4_1:4100452-4100471 Msa0530100:intron 40.0%
ACCATACCTGTAGTTCATCT+TGG + chr4_1:4100478-4100497 None:intergenic 40.0%
GATGATCTAATGGAGTGATG+TGG - chr4_1:4100547-4100566 Msa0530100:intron 40.0%
!!! TTGACACCACTTTTTGACTG+AGG + chr4_1:4100731-4100750 None:intergenic 40.0%
!! GTGTTTTCGAGACAACCATA+AGG - chr4_1:4101339-4101358 Msa0530100:intron 40.0%
!! CAATATCTCTGGCTTTGTCA+AGG + chr4_1:4101553-4101572 None:intergenic 40.0%
! CTTTTGTGTCCATAAAGGTG+TGG - chr4_1:4101788-4101807 Msa0530100:intron 40.0%
!! CATAAAGGTGTGGCTTTTGT+GGG - chr4_1:4101798-4101817 Msa0530100:intron 40.0%
GCCACAATATCCAAGCTTTA+AGG + chr4_1:4101842-4101861 None:intergenic 40.0%
! TAGTACTAGCTTGATGCCAT+TGG - chr4_1:4101906-4101925 Msa0530100:intron 40.0%
CCACAAAATAGCAGATCCAA+TGG + chr4_1:4101925-4101944 None:intergenic 40.0%
!!! CCATTGGATCTGCTATTTTG+TGG - chr4_1:4101922-4101941 Msa0530100:intron 40.0%
! TGTATTAGAGGCATGGATCT+TGG - chr4_1:4102235-4102254 Msa0530100:intron 40.0%
TCATTCACATGCCTGACTTT+AGG - chr4_1:4102277-4102296 Msa0530100:intron 40.0%
AAAGCCTTTGACCTAAAGTC+AGG + chr4_1:4102291-4102310 None:intergenic 40.0%
TAGTCCCACATCAGATAGAT+AGG - chr4_1:4102365-4102384 Msa0530100:CDS 40.0%
ATACCATGTCACGAAAATCG+GGG + chr4_1:4102462-4102481 None:intergenic 40.0%
GATACCATGTCACGAAAATC+GGG + chr4_1:4102463-4102482 None:intergenic 40.0%
GAATCCTATCTATCCGATGT+GGG + chr4_1:4102602-4102621 None:intergenic 40.0%
AGAATCCTATCTATCCGATG+TGG + chr4_1:4102603-4102622 None:intergenic 40.0%
ACTCATCCTTACAAAACAGG+CGG + chr4_1:4102668-4102687 None:intergenic 40.0%
CTCTCACCCTTGAAAAATGA+AGG + chr4_1:4102814-4102833 None:intergenic 40.0%
!!! GAGAGTATTTTGGCAGATTC+TGG - chr4_1:4102829-4102848 Msa0530100:intron 40.0%
ATTGCTCTATCTCAAAGGAC+CGG - chr4_1:4102871-4102890 Msa0530100:intron 40.0%
CATTCTCAACCTGAAAAAGC+AGG + chr4_1:4103009-4103028 None:intergenic 40.0%
! AATCCTCATAGTGGAACAAC+AGG - chr4_1:4103085-4103104 Msa0530100:intron 40.0%
GTGTTAATACCTATCACCCA+TGG + chr4_1:4103134-4103153 None:intergenic 40.0%
! GCAGAAGTTTATGTCACTTG+CGG - chr4_1:4103886-4103905 Msa0530100:intron 40.0%
TGGCATAAACACTTGTGAGA+TGG + chr4_1:4104227-4104246 None:intergenic 40.0%
! GACTTTATTTGCAGCTTGCT+TGG - chr4_1:4104342-4104361 Msa0530100:intron 40.0%
! CTATTTCTTTCATTCTGGGG+AGG - chr4_1:4104415-4104434 Msa0530100:intron 40.0%
!! GCATTTTAAGGACATGAGTG+TGG - chr4_1:4104534-4104553 Msa0530100:intron 40.0%
TTGAGTCACTCTTCTACCTT+TGG - chr4_1:4104590-4104609 Msa0530100:intron 40.0%
! ATCTTGGTATGTCTTGTTGC+CGG + chr4_1:4104623-4104642 None:intergenic 40.0%
GCAACAAGACATACCAAGAT+TGG - chr4_1:4104623-4104642 Msa0530100:intron 40.0%
GTACTCTCTTTGTCCCATAT+TGG - chr4_1:4104774-4104793 Msa0530100:intron 40.0%
CTTTAACACCAGTGTTAACC+TGG + chr4_1:4104931-4104950 None:intergenic 40.0%
GATGCAAAGTTTCTTTCTCG+CGG - chr4_1:4104958-4104977 Msa0530100:intron 40.0%
! TCTTCTCTTTTCGCCTTCTT+CGG - chr4_1:4105000-4105019 Msa0530100:intron 40.0%
TCTAATGGAATGACCGAAGA+AGG + chr4_1:4105016-4105035 None:intergenic 40.0%
CGGTCATTCCATTAGATGAA+TGG - chr4_1:4105020-4105039 Msa0530100:intron 40.0%
TCCTTGTCACAATCCTCAAA+GGG + chr4_1:4105066-4105085 None:intergenic 40.0%
TTCCTTGTCACAATCCTCAA+AGG + chr4_1:4105067-4105086 None:intergenic 40.0%
! TCATGGTAGAGAAGCATGAA+CGG + chr4_1:4105179-4105198 None:intergenic 40.0%
AGTGGTTCATCAACTAGTCA+TGG + chr4_1:4105196-4105215 None:intergenic 40.0%
TCAACCAAGATTCAAAGACG+GGG - chr4_1:4105216-4105235 Msa0530100:intron 40.0%
AATTCCCCGTCTTTGAATCT+TGG + chr4_1:4105223-4105242 None:intergenic 40.0%
!! ACGGGGAATTTGTTCCATTT+TGG - chr4_1:4105233-4105252 Msa0530100:intron 40.0%
ACATCTTACAGGCTCCAAAA+TGG + chr4_1:4105250-4105269 None:intergenic 40.0%
! TGAAGGTTCTGACATCTTAC+AGG + chr4_1:4105261-4105280 None:intergenic 40.0%
TCACAATTGCTTCCCAATGA+AGG + chr4_1:4105278-4105297 None:intergenic 40.0%
TTGGGAAGCAATTGTGAAAC+AGG - chr4_1:4105281-4105300 Msa0530100:intron 40.0%
GGACGCTTCAAGTAATAAGC+TGG + chr4_1:4098505-4098524 None:intergenic 45.0%
!! GTGTAGCTTTGTTGTGTAGC+GGG - chr4_1:4099120-4099139 Msa0530100:intron 45.0%
TCGCAGATCACAGAAAATGG+CGG + chr4_1:4099157-4099176 None:intergenic 45.0%
TGTCTGTGCCAATGCTTCAT+AGG + chr4_1:4099327-4099346 None:intergenic 45.0%
GCAACGATGCTTCATATTGC+AGG + chr4_1:4099435-4099454 None:intergenic 45.0%
TGAGATGGCCTGCATACATT+TGG - chr4_1:4100056-4100075 Msa0530100:CDS 45.0%
TTGTCGTCTGCCAATCAATC+TGG - chr4_1:4100131-4100150 Msa0530100:intron 45.0%
GCCAAGATGAACTACAGGTA+TGG - chr4_1:4100474-4100493 Msa0530100:intron 45.0%
TACCAGCCTCAGTCAAAAAG+TGG - chr4_1:4100722-4100741 Msa0530100:intron 45.0%
!! AGTGGTGTCAATAGCTTTGG+AGG - chr4_1:4100740-4100759 Msa0530100:intron 45.0%
!! GTCAATAGCTTTGGAGGTCT+TGG - chr4_1:4100746-4100765 Msa0530100:intron 45.0%
GTCTTCATATGCAGGGGAAA+AGG + chr4_1:4100854-4100873 None:intergenic 45.0%
AACCAGGTCTTCATATGCAG+GGG + chr4_1:4100860-4100879 None:intergenic 45.0%
CAACCAGGTCTTCATATGCA+GGG + chr4_1:4100861-4100880 None:intergenic 45.0%
ACAACCAGGTCTTCATATGC+AGG + chr4_1:4100862-4100881 None:intergenic 45.0%
TCACCACAATCCAGAGTAGT+AGG - chr4_1:4101485-4101504 Msa0530100:intron 45.0%
CAGATAGATTACTGCCTGCA+TGG - chr4_1:4101573-4101592 Msa0530100:intron 45.0%
GCATGTGTAGAAACTTACCC+CGG + chr4_1:4101669-4101688 None:intergenic 45.0%
CCACAAAAGCCACACCTTTA+TGG + chr4_1:4101800-4101819 None:intergenic 45.0%
!! CCATAAAGGTGTGGCTTTTG+TGG - chr4_1:4101797-4101816 Msa0530100:intron 45.0%
CATGCCTGACTTTAGGTCAA+AGG - chr4_1:4102284-4102303 Msa0530100:intron 45.0%
! ATTTGTTAGCGGCCAACACT+CGG - chr4_1:4102335-4102354 Msa0530100:CDS 45.0%
GACATGGTATCAGAGCCTAT+CGG - chr4_1:4102472-4102491 Msa0530100:intron 45.0%
ACATGGTATCAGAGCCTATC+GGG - chr4_1:4102473-4102492 Msa0530100:intron 45.0%
TAGTCCCACATCGGATAGAT+AGG - chr4_1:4102595-4102614 Msa0530100:intron 45.0%
TACAAAACAGGCGGCTTGTA+CGG + chr4_1:4102659-4102678 None:intergenic 45.0%
! TACAAGCCGCCTGTTTTGTA+AGG - chr4_1:4102659-4102678 Msa0530100:intron 45.0%
! AGACCCAAAGTATCAGCAGA+AGG - chr4_1:4102894-4102913 Msa0530100:intron 45.0%
!!! GATTTGCTCCCTGCTTTTTC+AGG - chr4_1:4102997-4103016 Msa0530100:intron 45.0%
TAGCCTGTTGTTCCACTATG+AGG + chr4_1:4103091-4103110 None:intergenic 45.0%
GGCTACTCTCCTATCACATT+TGG - chr4_1:4103106-4103125 Msa0530100:intron 45.0%
TTCATCCATCTGCAGGTACT+CGG + chr4_1:4103804-4103823 None:intergenic 45.0%
!! ATGCTTGCTTTGGGATCATC+TGG - chr4_1:4103845-4103864 Msa0530100:intron 45.0%
!! GCTTTGGGATCATCTGGTTA+TGG - chr4_1:4103851-4103870 Msa0530100:intron 45.0%
! GTTTATGTCACTTGCGGAAG+AGG - chr4_1:4103892-4103911 Msa0530100:intron 45.0%
! CTTGTGAGATGGTTTGGAAG+AGG + chr4_1:4104216-4104235 None:intergenic 45.0%
ACATGAGTGTGGGTACATCA+TGG - chr4_1:4104545-4104564 Msa0530100:intron 45.0%
GTACATCATGGAACATCCTG+AGG - chr4_1:4104557-4104576 Msa0530100:intron 45.0%
AAGAGTGACTCAACTGTCTC+TGG + chr4_1:4104583-4104602 None:intergenic 45.0%
AGACATACCAAGATTGGGGT+TGG - chr4_1:4104629-4104648 Msa0530100:intron 45.0%
GAAGAACTCTCGCATAGAGT+CGG - chr4_1:4104672-4104691 Msa0530100:intron 45.0%
AAGAACTCTCGCATAGAGTC+GGG - chr4_1:4104673-4104692 Msa0530100:intron 45.0%
ATGTTGTTGTCTCACTTCCC+AGG - chr4_1:4104910-4104929 Msa0530100:intron 45.0%
! ACCCTTTGAGGATTGTGACA+AGG - chr4_1:4105062-4105081 Msa0530100:intron 45.0%
GATTGTGACAAGGAACGAAG+CGG - chr4_1:4105072-4105091 Msa0530100:intron 45.0%
TCCTAGAATAGGTGGCAGAA+AGG - chr4_1:4105132-4105151 Msa0530100:intron 45.0%
TCCTTTCTGCCACCTATTCT+AGG + chr4_1:4105136-4105155 None:intergenic 45.0%
AGAATAGGTGGCAGAAAGGA+AGG - chr4_1:4105136-4105155 Msa0530100:intron 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+TGG - chr4_1:4101455-4101474 Msa0530100:intron 5.0%
!! TTTGAAAATAAAAAATTATA+AGG + chr4_1:4103497-4103516 None:intergenic 5.0%
!! ATTTATTAAAAAAAATAAAG+TGG + chr4_1:4104837-4104856 None:intergenic 5.0%
GGGAGTAGATCAGTGAGTAG+TGG - chr4_1:4098454-4098473 Msa0530100:three_prime_UTR 50.0%
CAAGACACGCCTTTGATCAG+AGG + chr4_1:4098694-4098713 None:intergenic 50.0%
TCTGGTGTACGATGCACATG+TGG + chr4_1:4099408-4099427 None:intergenic 50.0%
!! AACGGCGGGTGTTGATTGTT+TGG - chr4_1:4099701-4099720 Msa0530100:intron 50.0%
CAGGTGTGCCAAATGTATGC+AGG + chr4_1:4100067-4100086 None:intergenic 50.0%
ACGAAAGTAGGAGTGGTGTC+AGG + chr4_1:4100086-4100105 None:intergenic 50.0%
TGGCAGACGACAATTCACGT+CGG + chr4_1:4100124-4100143 None:intergenic 50.0%
! TCCTTTGGGGGCTAAGCAAT+TGG - chr4_1:4100268-4100287 Msa0530100:CDS 50.0%
TCCAATTGCTTAGCCCCCAA+AGG + chr4_1:4100272-4100291 None:intergenic 50.0%
AAAGTGCATGATGGCACTGC+CGG - chr4_1:4100317-4100336 Msa0530100:CDS 50.0%
CAGGTCCACTAAAGAGGTCT+TGG - chr4_1:4100367-4100386 Msa0530100:intron 50.0%
!!! CACCACTTTTTGACTGAGGC+TGG + chr4_1:4100727-4100746 None:intergenic 50.0%
TTCCCCTGCATATGAAGACC+TGG - chr4_1:4100855-4100874 Msa0530100:CDS 50.0%
CCACCTACTACTCTGGATTG+TGG + chr4_1:4101491-4101510 None:intergenic 50.0%
CCACAATCCAGAGTAGTAGG+TGG - chr4_1:4101488-4101507 Msa0530100:intron 50.0%
AAGAAGGCCACCTACTACTC+TGG + chr4_1:4101498-4101517 None:intergenic 50.0%
TTTGTTAGCGGCCAACACTC+GGG - chr4_1:4102336-4102355 Msa0530100:CDS 50.0%
GACTAAATCCACCCGAGTGT+TGG + chr4_1:4102350-4102369 None:intergenic 50.0%
!! CAAAACTGGCTTGTACGGTG+AGG + chr4_1:4102424-4102443 None:intergenic 50.0%
TGTGTTAGCGGCCAACACTT+GGG - chr4_1:4102563-4102582 Msa0530100:intron 50.0%
TAAATCCCACCCCCAAGTGT+TGG + chr4_1:4102577-4102596 None:intergenic 50.0%
GGTGGGATTTAGTCCCACAT+CGG - chr4_1:4102586-4102605 Msa0530100:intron 50.0%
ATTCCTGACTCTGGCTGTGT+TGG - chr4_1:4102744-4102763 Msa0530100:intron 50.0%
CTGCTGATACTTTGGGTCTC+CGG + chr4_1:4102893-4102912 None:intergenic 50.0%
!!! TTTTTTTACGGGGAAGGGGG+AGG - chr4_1:4102945-4102964 Msa0530100:intron 50.0%
TCCTATCACATTTGGCGCCA+TGG - chr4_1:4103114-4103133 Msa0530100:intron 50.0%
CCTATCACATTTGGCGCCAT+GGG - chr4_1:4103115-4103134 Msa0530100:intron 50.0%
TTCAACCGAGTACCTGCAGA+TGG - chr4_1:4103796-4103815 Msa0530100:intron 50.0%
ACGCTAGTTCATCCATCTGC+AGG + chr4_1:4103811-4103830 None:intergenic 50.0%
AACTAGCGTGCTTTGCTCCA+GGG - chr4_1:4103822-4103841 Msa0530100:intron 50.0%
TTCTACCTTTGGCGCCTAAC+CGG - chr4_1:4104601-4104620 Msa0530100:intron 50.0%
! GGTATGTCTTGTTGCCGGTT+AGG + chr4_1:4104618-4104637 None:intergenic 50.0%
GTCGGGCTATGTTGGACTAA+AGG - chr4_1:4104690-4104709 Msa0530100:intron 50.0%
!! TCCCATATTGGGTGCCACTT+TGG - chr4_1:4104786-4104805 Msa0530100:intron 50.0%
GCCAAAGTGGCACCCAATAT+GGG + chr4_1:4104790-4104809 None:intergenic 50.0%
TGCCAAAGTGGCACCCAATA+TGG + chr4_1:4104791-4104810 None:intergenic 50.0%
CTCACTTCCCAGGTTAACAC+TGG - chr4_1:4104920-4104939 Msa0530100:intron 50.0%
! ACACAGAAGCACACCCTTTG+AGG - chr4_1:4105050-4105069 Msa0530100:intron 50.0%
TAGGTGGCAGAAAGGAAGGT+CGG - chr4_1:4105140-4105159 Msa0530100:intron 50.0%
GTCTGACACGTGTCAGTGTC+TGG - chr4_1:4098715-4098734 Msa0530100:three_prime_UTR 55.0%
CAGACGACAATTCACGTCGG+AGG + chr4_1:4100121-4100140 None:intergenic 55.0%
CTTCCTTGTGGCTGTGTTGC+CGG - chr4_1:4100194-4100213 Msa0530100:intron 55.0%
TTCCTTGTGGCTGTGTTGCC+GGG - chr4_1:4100195-4100214 Msa0530100:intron 55.0%
AAGTGCATGATGGCACTGCC+GGG - chr4_1:4100318-4100337 Msa0530100:CDS 55.0%
TCCCTTCGAGTCAACCTTCC+CGG + chr4_1:4100339-4100358 None:intergenic 55.0%
GTGGGGCCAAGATGAACTAC+AGG - chr4_1:4100469-4100488 Msa0530100:intron 55.0%
CCTGTAGGTGTGTTCCATGC+AGG + chr4_1:4101590-4101609 None:intergenic 55.0%
CCTGCATGGAACACACCTAC+AGG - chr4_1:4101587-4101606 Msa0530100:intron 55.0%
CAAGGACGTGCACACAATCC+TGG - chr4_1:4101638-4101657 Msa0530100:intron 55.0%
GACGTGCACACAATCCTGGA+TGG - chr4_1:4101642-4101661 Msa0530100:intron 55.0%
GCACACAATCCTGGATGGAC+CGG - chr4_1:4101647-4101666 Msa0530100:intron 55.0%
CACACAATCCTGGATGGACC+GGG - chr4_1:4101648-4101667 Msa0530100:intron 55.0%
ACACAATCCTGGATGGACCG+GGG - chr4_1:4101649-4101668 Msa0530100:intron 55.0%
AAACTTACCCCGGTCCATCC+AGG + chr4_1:4101659-4101678 None:intergenic 55.0%
! AGGCCCCGATTTTCGTGACA+TGG - chr4_1:4102456-4102475 Msa0530100:intron 55.0%
AGCCTATCGGGACCATCGTT+GGG - chr4_1:4102485-4102504 Msa0530100:intron 55.0%
AGATGCAGGAAGCCCAACGA+TGG + chr4_1:4102500-4102519 None:intergenic 55.0%
TTCCTGCATCTCCACGCTTC+AGG - chr4_1:4102509-4102528 Msa0530100:intron 55.0%
GTGTGTTAGCGGCCAACACT+TGG - chr4_1:4102562-4102581 Msa0530100:intron 55.0%
GTGTTAGCGGCCAACACTTG+GGG - chr4_1:4102564-4102583 Msa0530100:intron 55.0%
TGTTAGCGGCCAACACTTGG+GGG - chr4_1:4102565-4102584 Msa0530100:intron 55.0%
TGACCAACACAGCCAGAGTC+AGG + chr4_1:4102750-4102769 None:intergenic 55.0%
! GACTCTGGCTGTGTTGGTCA+CGG - chr4_1:4102750-4102769 Msa0530100:intron 55.0%
CCCATGGCGCCAAATGTGAT+AGG + chr4_1:4103118-4103137 None:intergenic 55.0%
CATTTGGCGCCATGGGTGAT+AGG - chr4_1:4103122-4103141 Msa0530100:intron 55.0%
GAACTAGCGTGCTTTGCTCC+AGG - chr4_1:4103821-4103840 Msa0530100:intron 55.0%
TGCTCCAGGGATGCTTGCTT+TGG - chr4_1:4103835-4103854 Msa0530100:intron 55.0%
GCTCCAGGGATGCTTGCTTT+GGG - chr4_1:4103836-4103855 Msa0530100:intron 55.0%
GATCCCAAAGCAAGCATCCC+TGG + chr4_1:4103842-4103861 None:intergenic 55.0%
ACTCAACTGTCTCTGGCCTC+AGG + chr4_1:4104576-4104595 None:intergenic 55.0%
CGCATAGAGTCGGGCTATGT+TGG - chr4_1:4104682-4104701 Msa0530100:intron 55.0%
TGGCAGAAAGGAAGGTCGGT+CGG - chr4_1:4105144-4105163 Msa0530100:intron 55.0%
!! TGCCGGGAAGGTTGACTCGA+AGG - chr4_1:4100334-4100353 Msa0530100:CDS 60.0%
!! GCCGGGAAGGTTGACTCGAA+GGG - chr4_1:4100335-4100354 Msa0530100:CDS 60.0%
GAGTTTGCGACCCAGCTGTC+AGG + chr4_1:4101290-4101309 None:intergenic 60.0%
CAGCTGGGTCGCAAACTCTC+TGG - chr4_1:4101292-4101311 Msa0530100:intron 60.0%
GAGCCTATCGGGACCATCGT+TGG - chr4_1:4102484-4102503 Msa0530100:intron 60.0%
AGCCCAACGATGGTCCCGAT+AGG + chr4_1:4102490-4102509 None:intergenic 60.0%
TCTCCACGCTTCAGGCCCAT+TGG - chr4_1:4102517-4102536 Msa0530100:intron 60.0%
CTCCACGCTTCAGGCCCATT+GGG - chr4_1:4102518-4102537 Msa0530100:intron 60.0%
TCCACGCTTCAGGCCCATTG+GGG - chr4_1:4102519-4102538 Msa0530100:intron 60.0%
AACAGGCGGCTTGTACGGTG+AGG + chr4_1:4102654-4102673 None:intergenic 60.0%
! TGTTGCCGGTTAGGCGCCAA+AGG + chr4_1:4104609-4104628 None:intergenic 60.0%
GGCAGAAAGGAAGGTCGGTC+GGG - chr4_1:4105145-4105164 Msa0530100:intron 60.0%
TGCCCGGCAACACAGCCACA+AGG + chr4_1:4100200-4100219 None:intergenic 65.0%
GCATGATGGCACTGCCGGGA+AGG - chr4_1:4100322-4100341 Msa0530100:CDS 65.0%
GTTAGCGGCCAACACTCGGG+TGG - chr4_1:4102339-4102358 Msa0530100:CDS 65.0%
GGCCTGAAGCGTGGAGATGC+AGG + chr4_1:4102514-4102533 None:intergenic 65.0%
ACGCTTCAGGCCCATTGGGG+CGG - chr4_1:4102522-4102541 Msa0530100:intron 65.0%
ACGCTTCAGCCCGCCCCAAT+GGG + chr4_1:4102535-4102554 None:intergenic 65.0%
! GCGTGAGGGGGGTGTGTTAG+CGG - chr4_1:4102551-4102570 Msa0530100:intron 65.0%
TAGCGGCCAACACTTGGGGG+TGG - chr4_1:4102568-4102587 Msa0530100:intron 65.0%
AGCGGCCAACACTTGGGGGT+GGG - chr4_1:4102569-4102588 Msa0530100:intron 65.0%
GCCCCAATGGGCCTGAAGCG+TGG + chr4_1:4102523-4102542 None:intergenic 70.0%
CGCTTCAGGCCCATTGGGGC+GGG - chr4_1:4102523-4102542 Msa0530100:intron 70.0%
CACGCTTCAGCCCGCCCCAA+TGG + chr4_1:4102536-4102555 None:intergenic 70.0%
!! TTGGGGCGGGCTGAAGCGTG+AGG - chr4_1:4102536-4102555 Msa0530100:intron 70.0%
!! TGGGGCGGGCTGAAGCGTGA+GGG - chr4_1:4102537-4102556 Msa0530100:intron 70.0%
!! GGGGCGGGCTGAAGCGTGAG+GGG - chr4_1:4102538-4102557 Msa0530100:intron 75.0%
!! GGGCGGGCTGAAGCGTGAGG+GGG - chr4_1:4102539-4102558 Msa0530100:intron 75.0%
!! GGCGGGCTGAAGCGTGAGGG+GGG - chr4_1:4102540-4102559 Msa0530100:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 4098445 4105519 4098445 ID=Msa0530100;Name=Msa0530100
chr4_1 mRNA 4098445 4105519 4098445 ID=Msa0530100-mRNA-1;Parent=Msa0530100;Name=Msa0530100-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.83|0.92|1|1|1|13|348|534
chr4_1 exon 4098445 4099032 4098445 ID=Msa0530100-mRNA-1:exon:1223;Parent=Msa0530100-mRNA-1
chr4_1 exon 4099250 4099420 4099250 ID=Msa0530100-mRNA-1:exon:1222;Parent=Msa0530100-mRNA-1
chr4_1 exon 4100051 4100149 4100051 ID=Msa0530100-mRNA-1:exon:1221;Parent=Msa0530100-mRNA-1
chr4_1 exon 4100250 4100358 4100250 ID=Msa0530100-mRNA-1:exon:1220;Parent=Msa0530100-mRNA-1
chr4_1 exon 4100609 4100674 4100609 ID=Msa0530100-mRNA-1:exon:1219;Parent=Msa0530100-mRNA-1
chr4_1 exon 4100821 4100945 4100821 ID=Msa0530100-mRNA-1:exon:1218;Parent=Msa0530100-mRNA-1
chr4_1 exon 4101049 4101138 4101049 ID=Msa0530100-mRNA-1:exon:1217;Parent=Msa0530100-mRNA-1
chr4_1 exon 4102294 4102465 4102294 ID=Msa0530100-mRNA-1:exon:1216;Parent=Msa0530100-mRNA-1
chr4_1 exon 4102604 4102669 4102604 ID=Msa0530100-mRNA-1:exon:1215;Parent=Msa0530100-mRNA-1
chr4_1 exon 4103124 4103236 4103124 ID=Msa0530100-mRNA-1:exon:1214;Parent=Msa0530100-mRNA-1
chr4_1 exon 4103474 4103662 4103474 ID=Msa0530100-mRNA-1:exon:1213;Parent=Msa0530100-mRNA-1
chr4_1 exon 4104025 4104072 4104025 ID=Msa0530100-mRNA-1:exon:1212;Parent=Msa0530100-mRNA-1
chr4_1 exon 4105403 4105519 4105403 ID=Msa0530100-mRNA-1:exon:1211;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4105403 4105519 4105403 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4104025 4104072 4104025 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4103474 4103662 4103474 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4103124 4103236 4103124 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4102604 4102669 4102604 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4102294 4102465 4102294 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4101049 4101138 4101049 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4100821 4100945 4100821 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4100609 4100674 4100609 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4100250 4100358 4100250 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4100051 4100149 4100051 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4099250 4099420 4099250 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 CDS 4098793 4099032 4098793 ID=Msa0530100-mRNA-1:cds;Parent=Msa0530100-mRNA-1
chr4_1 three_prime_UTR 4098445 4098792 4098445 ID=Msa0530100-mRNA-1:three_prime_utr;Parent=Msa0530100-mRNA-1
Gene Sequence

>Msa0530100

ATGGCGAGAGGGAGTAGATCAGTGAGTAGTGGTAGCAGTAAATGGAGATACTGTAATCCAGCTTATTACTTGAAGCGTCCTAAGCGTCTTGCTATGCTTTTCATCGTTTTCGTTTCGGTTGAAGTTGCTGAGCTACAGAAAGAAATAACCGACTTGCATAATTTGTTGGAAGAGTCAAATAAAGTGCATGATGGCACTGCCGGGAAGGTTGACTCGAAGGGAAAAACTAACAGGTCCACTAAAGAGGTCTTGGATAATCCCATTGATATCCAGAGAAGGGAAAAAGTAAAAGAAGCAATGCTTCATGCTTGGAGTTCTTACGAGAAATATGCGTGGGGCCAAGATGAACTACAGCCTCAGTCAAAAAGTGGTGTCAATAGCTTTGGAGGTCTTGGAGCAACTTTAATTGATTCTCTTGATACACTATACATTATGGGTCTCGATGAACAGTTTCAGAAAGCCCGAGACTGGGTCGCAAACTCTCTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTCGAGACAACCATAAGAGTAGTAGGTGGCCTTCTTAGTACATACGATCTTTCAGGCGACAAAATTTTCCTTGACAAAGCCAGAGATATTGCAGATAGATTACTGCCTGCATGGAACACACCTACAGGAATTCCTTATAACATTATCAACTTGTCACAAGGACGTGCACACAATCCTGGATGGACCGGGGGTGAGAGTATTTTGGCAGATTCTGGCACTGAACAACTAGAGTTCATTGCTCTATCTCAAAGGACCGGAGACCCAAAGTATCAGCAGAAGGTTGAGAATGTAATAACAGTGCTTAATAAAACATTCCCTGATGATGGATTACTTCCTATCTATATCAATCCTCATAGTGGAACAACAGGCTACTCTCCTATCACATTTGGCGCCATGGGTGATAGTTTTTATGAATACTTGCTTAAAGTTTGGGTACAAGGGAATAAGACTCTAGCTGTAAAACTTTATAGAGATATGTGGGAGAAATCAATGAAAGGTCTGTTAAGTTTGATTCGGAAGTCAACGCCATCTTCCTTTACTTATATATGTGAGAAGAGTGGAGGATCTCTCACTGACAAAATGGATGAACTAGCGTGCTTTGCTCCAGGGATGCTTGCTTTGGGATCATCTGGTTATGGTCCTGATGATTCGCAGAAGTTTATGTCACTTGCGGAAGAGGACATGAGTGTGGGTACATCATGGAACATCCTGAGGCCAGAGACAGTTGAGTCACTCTTCTACCTTTGGCGCCTAACCGGCAACAAGACATACCAAGATTGGGGTTGGAATATATTTCAAGCTTTCGAGAAGAACTCTCGCATAGAGTCGGGCTATGTTGGACTAAAGGATGTTAACACTGGTGTTAAAGACAACATGATGCAAAGTTTCTTTCTCGCGGAGACACTGAAGTATCTTTATCTTCTCTTTTCGCCTTCTTCGGTCATTCCATTAGATGAATGGGTATTCAACACAGAAGCACACCCTTTGAGGATTGTGACAAGGAACGAAGCGGAACCTGTTAAGAACTCAAATGAGAAGCAAAAATCTTTTCCTAGAATAGGTGGCAGAAAGGAAGGTCGGTCGGGTTAG

Protein sequence

>Msa0530100

MARGSRSVSSGSSKWRYCNPAYYLKRPKRLAMLFIVFVSVEVAELQKEITDLHNLLEESNKVHDGTAGKVDSKGKTNRSTKEVLDNPIDIQRREKVKEAMLHAWSSYEKYAWGQDELQPQSKSGVNSFGGLGATLIDSLDTLYIMGLDEQFQKARDWVANSLDFNKDYEASVFETTIRVVGGLLSTYDLSGDKIFLDKARDIADRLLPAWNTPTGIPYNIINLSQGRAHNPGWTGGESILADSGTEQLEFIALSQRTGDPKYQQKVENVITVLNKTFPDDGLLPIYINPHSGTTGYSPITFGAMGDSFYEYLLKVWVQGNKTLAVKLYRDMWEKSMKGLLSLIRKSTPSSFTYICEKSGGSLTDKMDELACFAPGMLALGSSGYGPDDSQKFMSLAEEDMSVGTSWNILRPETVESLFYLWRLTGNKTYQDWGWNIFQAFEKNSRIESGYVGLKDVNTGVKDNMMQSFFLAETLKYLYLLFSPSSVIPLDEWVFNTEAHPLRIVTRNEAEPVKNSNEKQKSFPRIGGRKEGRSG*