Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261360 | XP_003597087.1 | 91.063 | 414 | 8 | 2 | 1 | 385 | 1 | 414 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261360 | sp|Q9M0Y3|ENT3_ARATH | 66.667 | 408 | 106 | 3 | 5 | 383 | 8 | 414 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261360 | G7IRM9 | 91.063 | 414 | 8 | 2 | 1 | 385 | 1 | 414 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015460 | Msa0261360 | 0.826934 | 2.065087e-54 | -8.615850e-47 |
| Msa0078610 | Msa0261360 | 0.811920 | 5.500116e-51 | -8.615850e-47 |
| Msa0092410 | Msa0261360 | 0.809631 | 1.719684e-50 | -8.615850e-47 |
| Msa0109590 | Msa0261360 | 0.821247 | 4.468855e-53 | -8.615850e-47 |
| Msa0130520 | Msa0261360 | 0.800515 | 1.390319e-48 | -8.615850e-47 |
| Msa0215590 | Msa0261360 | 0.802540 | 5.345367e-49 | -8.615850e-47 |
| Msa0220080 | Msa0261360 | 0.888677 | 4.773415e-73 | -8.615850e-47 |
| Msa0236070 | Msa0261360 | 0.810929 | 9.024879e-51 | -8.615850e-47 |
| Msa0244140 | Msa0261360 | 0.816745 | 4.719630e-52 | -8.615850e-47 |
| Msa0244190 | Msa0261360 | 0.816899 | 4.358084e-52 | -8.615850e-47 |
| Msa0261360 | Msa0269560 | 0.803055 | 4.184235e-49 | -8.615850e-47 |
| Msa0261360 | Msa0319290 | 0.813648 | 2.301617e-51 | -8.615850e-47 |
| Msa0261360 | Msa0333650 | 0.807354 | 5.267399e-50 | -8.615850e-47 |
| Msa0261360 | Msa0340690 | 0.924669 | 5.174109e-90 | -8.615850e-47 |
| Msa0261360 | Msa0340710 | 0.920980 | 6.424695e-88 | -8.615850e-47 |
| Msa0261360 | Msa0387370 | 0.814063 | 1.864242e-51 | -8.615850e-47 |
| Msa0261360 | Msa0468320 | 0.803194 | 3.917026e-49 | -8.615850e-47 |
| Msa0261360 | Msa0519190 | 0.816862 | 4.442750e-52 | -8.615850e-47 |
| Msa0261360 | Msa0521670 | 0.819130 | 1.364861e-52 | -8.615850e-47 |
| Msa0261360 | Msa0530100 | 0.808479 | 3.035478e-50 | -8.615850e-47 |
| Msa0261360 | Msa0532540 | 0.801350 | 9.384271e-49 | -8.615850e-47 |
| Msa0261360 | Msa0532930 | 0.801809 | 7.556091e-49 | -8.615850e-47 |
| Msa0261360 | Msa0582280 | 0.814722 | 1.332969e-51 | -8.615850e-47 |
| Msa0261360 | Msa0587030 | 0.813499 | 2.482364e-51 | -8.615850e-47 |
| Msa0261360 | Msa0589390 | 0.807849 | 4.134017e-50 | -8.615850e-47 |
| Msa0261360 | Msa0597000 | 0.838335 | 3.057802e-57 | -8.615850e-47 |
| Msa0261360 | Msa0600410 | -0.801321 | 9.516141e-49 | -8.615850e-47 |
| Msa0261360 | Msa0600890 | 0.802525 | 5.383102e-49 | -8.615850e-47 |
| Msa0261360 | Msa0615220 | 0.815603 | 8.496909e-52 | -8.615850e-47 |
| Msa0261360 | Msa0626850 | 0.821685 | 3.540256e-53 | -8.615850e-47 |
| Msa0261360 | Msa0664970 | 0.831132 | 1.985339e-55 | -8.615850e-47 |
| Msa0261360 | Msa0689780 | 0.802261 | 6.102620e-49 | -8.615850e-47 |
| Msa0261360 | Msa0713240 | 0.802075 | 6.663359e-49 | -8.615850e-47 |
| Msa0261360 | Msa0715410 | 0.819737 | 9.924121e-53 | -8.615850e-47 |
| Msa0261360 | Msa0721340 | 0.806253 | 8.996772e-50 | -8.615850e-47 |
| Msa0261360 | Msa0742150 | 0.811376 | 7.220494e-51 | -8.615850e-47 |
| Msa0261360 | Msa0749440 | 0.809903 | 1.503428e-50 | -8.615850e-47 |
| Msa0261360 | Msa0758230 | 0.803957 | 2.720227e-49 | -8.615850e-47 |
| Msa0261360 | Msa0773550 | 0.803037 | 4.220123e-49 | -8.615850e-47 |
| Msa0261360 | Msa0826760 | 0.800935 | 1.141324e-48 | -8.615850e-47 |
| Msa0261360 | Msa0861470 | 0.810758 | 9.830305e-51 | -8.615850e-47 |
| Msa0261360 | Msa0861570 | 0.800078 | 1.706366e-48 | -8.615850e-47 |
| Msa0261360 | Msa0888990 | 0.801314 | 9.545819e-49 | -8.615850e-47 |
| Msa0261360 | Msa0901320 | 0.831539 | 1.576206e-55 | -8.615850e-47 |
| Msa0261360 | Msa0902830 | 0.803955 | 2.723017e-49 | -8.615850e-47 |
| Msa0261360 | Msa0937330 | 0.800502 | 1.398808e-48 | -8.615850e-47 |
| Msa0261360 | Msa0944870 | 0.805187 | 1.506969e-49 | -8.615850e-47 |
| Msa0261360 | Msa0951400 | 0.830297 | 3.179802e-55 | -8.615850e-47 |
| Msa0261360 | Msa1000930 | 0.812601 | 3.906414e-51 | -8.615850e-47 |
| Msa0261360 | Msa1042660 | 0.805051 | 1.609047e-49 | -8.615850e-47 |
| Msa0261360 | Msa1115280 | 0.814392 | 1.576840e-51 | -8.615850e-47 |
| Msa0261360 | Msa1200250 | 0.811730 | 6.049120e-51 | -8.615850e-47 |
| Msa0261360 | Msa1258370 | 0.805772 | 1.136119e-49 | -8.615850e-47 |
| Msa0261360 | Msa1272610 | 0.808891 | 2.478716e-50 | -8.615850e-47 |
| Msa0261360 | Msa1276340 | 0.834352 | 3.150230e-56 | -8.615850e-47 |
| Msa0261360 | Msa1310440 | 0.806032 | 1.001424e-49 | -8.615850e-47 |
| Msa0261360 | Msa1329870 | 0.800929 | 1.144513e-48 | -8.615850e-47 |
| Msa0261360 | Msa1355890 | 0.842288 | 2.833848e-58 | -8.615850e-47 |
| Msa0261360 | Msa1371940 | 0.808413 | 3.134738e-50 | -8.615850e-47 |
| Msa0261360 | Msa1381480 | 0.822348 | 2.485365e-53 | -8.615850e-47 |
| Msa0261360 | Msa1382790 | 0.805850 | 1.094000e-49 | -8.615850e-47 |
| Msa0261360 | Msa1405220 | 0.805432 | 1.338719e-49 | -8.615850e-47 |
| Msa0261360 | Msa1420270 | 0.803263 | 3.790044e-49 | -8.615850e-47 |
| Msa0261360 | Msa1436600 | 0.802564 | 5.285138e-49 | -8.615850e-47 |
| Msa0261360 | Msa1454950 | 0.812615 | 3.877465e-51 | -8.615850e-47 |
| Msa0261360 | Msa1457160 | 0.842483 | 2.515215e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261360 | MtrunA17_Chr2g0323381 | 91.063 | 414 | 8 | 2 | 1 | 385 | 1 | 414 | 0.0 | 753 |
| Msa0261360 | MtrunA17_Chr4g0022871 | 77.536 | 414 | 64 | 2 | 1 | 385 | 1 | 414 | 0.0 | 644 |
| Msa0261360 | MtrunA17_Chr4g0022861 | 72.362 | 398 | 81 | 2 | 17 | 385 | 1 | 398 | 0.0 | 582 |
| Msa0261360 | MtrunA17_Chr2g0280971 | 64.619 | 407 | 114 | 3 | 7 | 383 | 35 | 441 | 0.0 | 518 |
| Msa0261360 | MtrunA17_Chr2g0280991 | 63.971 | 408 | 116 | 4 | 7 | 383 | 14 | 421 | 0.0 | 516 |
| Msa0261360 | MtrunA17_Chr4g0022801 | 67.424 | 396 | 72 | 3 | 47 | 385 | 10 | 405 | 0.0 | 510 |
| Msa0261360 | MtrunA17_Chr8g0335821 | 55.372 | 363 | 131 | 3 | 52 | 383 | 2 | 364 | 8.40e-123 | 359 |
| Msa0261360 | MtrunA17_Chr1g0184961 | 63.780 | 254 | 51 | 3 | 47 | 264 | 104 | 352 | 3.86e-102 | 306 |
| Msa0261360 | MtrunA17_Chr2g0280961 | 65.079 | 126 | 43 | 1 | 215 | 339 | 106 | 231 | 3.10e-49 | 166 |
| Msa0261360 | MtrunA17_Chr2g0280961 | 33.582 | 134 | 64 | 2 | 52 | 160 | 2 | 135 | 1.27e-12 | 67.0 |
| Msa0261360 | MtrunA17_Chr4g0020331 | 30.695 | 417 | 216 | 15 | 11 | 381 | 26 | 415 | 1.63e-43 | 156 |
| Msa0261360 | MtrunA17_Chr3g0103741 | 27.750 | 400 | 235 | 8 | 18 | 381 | 42 | 423 | 4.26e-36 | 136 |
| Msa0261360 | MtrunA17_Chr4g0063911 | 26.118 | 425 | 238 | 11 | 1 | 381 | 6 | 398 | 3.10e-30 | 119 |
| Msa0261360 | MtrunA17_Chr1g0184971 | 76.190 | 63 | 15 | 0 | 267 | 329 | 2 | 64 | 2.71e-28 | 106 |
| Msa0261360 | MtrunA17_Chr4g0022811 | 76.190 | 42 | 10 | 0 | 5 | 46 | 3 | 44 | 1.67e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0261360 | AT4G05120.1 | 66.667 | 408 | 106 | 3 | 5 | 383 | 8 | 414 | 0.0 | 552 |
| Msa0261360 | AT4G05120.2 | 66.667 | 408 | 106 | 3 | 5 | 383 | 8 | 414 | 0.0 | 552 |
| Msa0261360 | AT4G05110.3 | 63.235 | 408 | 120 | 3 | 5 | 383 | 8 | 414 | 0.0 | 523 |
| Msa0261360 | AT4G05110.1 | 63.235 | 408 | 120 | 3 | 5 | 383 | 8 | 414 | 0.0 | 523 |
| Msa0261360 | AT4G05110.2 | 62.990 | 408 | 121 | 3 | 5 | 383 | 8 | 414 | 0.0 | 521 |
| Msa0261360 | AT4G05140.1 | 62.500 | 408 | 124 | 2 | 5 | 383 | 8 | 415 | 0.0 | 518 |
| Msa0261360 | AT4G05130.1 | 60.584 | 411 | 130 | 4 | 5 | 385 | 8 | 416 | 7.99e-179 | 504 |
| Msa0261360 | AT3G09990.1 | 60.049 | 408 | 133 | 3 | 8 | 385 | 10 | 417 | 1.43e-171 | 485 |
| Msa0261360 | AT1G61630.1 | 57.177 | 418 | 140 | 5 | 1 | 383 | 1 | 414 | 2.20e-159 | 454 |
| Msa0261360 | AT1G70330.1 | 28.398 | 412 | 224 | 8 | 16 | 381 | 64 | 450 | 5.39e-43 | 155 |
| Msa0261360 | AT1G02630.1 | 27.670 | 412 | 231 | 9 | 5 | 381 | 10 | 389 | 8.03e-38 | 140 |
| Msa0261360 | AT1G02630.2 | 25.481 | 208 | 125 | 3 | 5 | 183 | 10 | 216 | 2.62e-14 | 73.9 |
Find 114 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTGAAATTCTTGAAAT+TGG | 0.116609 | 2_2:+59694379 | Msa0261360:CDS |
| GTGCATTAACCTCTGCTTTA+AGG | 0.117350 | 2_2:+59693458 | Msa0261360:CDS |
| TTTCTCCATGGTAGATTTAT+AGG | 0.187275 | 2_2:+59695108 | Msa0261360:three_prime_UTR |
| GACTCTTCCCTCTTCCTTCT+TGG | 0.207482 | 2_2:+59691133 | Msa0261360:five_prime_UTR |
| GAAAGAAATAGTACTTCTTT+AGG | 0.270591 | 2_2:-59693880 | None:intergenic |
| AGAGATATGATATGGTTAAA+TGG | 0.271531 | 2_2:+59695007 | Msa0261360:three_prime_UTR |
| ATTTCCATGTAATTTCAAAA+TGG | 0.285439 | 2_2:+59695242 | Msa0261360:three_prime_UTR |
| AGCAGCATTTGATAATTCTA+AGG | 0.310431 | 2_2:+59693492 | Msa0261360:CDS |
| GGGAAAATATGCTGCAATAT+TGG | 0.315284 | 2_2:+59692080 | Msa0261360:intron |
| GATAATGTTGACATCATTCT+TGG | 0.317000 | 2_2:+59694496 | Msa0261360:CDS |
| ATCTGCACCCAAAGGTTATA+AGG | 0.323238 | 2_2:+59694556 | Msa0261360:CDS |
| GTACTTCTTTAGGTATTGTT+TGG | 0.329362 | 2_2:-59693870 | None:intergenic |
| GGTTAAATGGCACAACAAAA+AGG | 0.338949 | 2_2:+59695020 | Msa0261360:three_prime_UTR |
| TAATTTCAAAATGGCTGTAT+TGG | 0.343524 | 2_2:+59695251 | Msa0261360:three_prime_UTR |
| AGGTCTTACCTTATAACCTT+TGG | 0.354635 | 2_2:-59694564 | None:intergenic |
| CTATGTGGTTTGGCAGCATC+TGG | 0.357354 | 2_2:+59693436 | Msa0261360:CDS |
| GGTCTTACCTTATAACCTTT+GGG | 0.357526 | 2_2:-59694563 | None:intergenic |
| ATATTGGTATGCTTCCTTCT+TGG | 0.358786 | 2_2:+59692096 | Msa0261360:CDS |
| ACACAAAATGCATTGAAGTA+TGG | 0.361696 | 2_2:+59695206 | Msa0261360:three_prime_UTR |
| CTAGACTGGTTGTGGTTGAT+AGG | 0.364036 | 2_2:+59694879 | Msa0261360:CDS |
| ATAGTGTCAATGCATAAATT+AGG | 0.364083 | 2_2:-59694066 | None:intergenic |
| AAGCTCAAAGAATGTTGATA+TGG | 0.364975 | 2_2:-59693728 | None:intergenic |
| TACAATGTGTGGGATCTAAT+AGG | 0.376699 | 2_2:+59694344 | Msa0261360:CDS |
| TAGCTGACCTGAATGAATTC+TGG | 0.378851 | 2_2:-59692947 | None:intergenic |
| TTACTACATTTACTTGTTCC+CGG | 0.391989 | 2_2:+59692164 | Msa0261360:CDS |
| GATACCGGAGCACATAGTTT+AGG | 0.399627 | 2_2:+59694115 | Msa0261360:CDS |
| AAGATCAGCTGAAACCGTTT+TGG | 0.400371 | 2_2:-59693833 | None:intergenic |
| GTACGGTAGTATTTCACAAT+TGG | 0.413573 | 2_2:-59693790 | None:intergenic |
| ACAGTCTTTCCTATGTGGTT+TGG | 0.413718 | 2_2:+59693426 | Msa0261360:intron |
| ATAATGTTGACATCATTCTT+GGG | 0.414131 | 2_2:+59694497 | Msa0261360:CDS |
| TAGTTGGATTTAGCAACATC+TGG | 0.417970 | 2_2:+59692815 | Msa0261360:intron |
| GGGTCCAGAACAAAATGCTT+TGG | 0.429540 | 2_2:+59694806 | Msa0261360:intron |
| GTATGCTTCCTTCTTGGCAA+TGG | 0.430207 | 2_2:+59692102 | Msa0261360:CDS |
| CATGTTCAAGGTGGAATGAT+TGG | 0.433600 | 2_2:+59692905 | Msa0261360:CDS |
| CATGAAGCCAGAATTCATTC+AGG | 0.440760 | 2_2:+59692940 | Msa0261360:CDS |
| GGTCCAGAACAAAATGCTTT+GGG | 0.444913 | 2_2:+59694807 | Msa0261360:CDS |
| TTGGTGTTGTTTCTACTTGG+AGG | 0.450252 | 2_2:+59694837 | Msa0261360:CDS |
| TGCTATATTGTCTTATAATG+AGG | 0.452571 | 2_2:+59692635 | Msa0261360:CDS |
| GTATCTTCAGACAGAAATCC+AGG | 0.455042 | 2_2:-59694097 | None:intergenic |
| TTGTTGGTGTTGTTTCTACT+TGG | 0.466918 | 2_2:+59694834 | Msa0261360:CDS |
| AAATGCTTTGGGAAACTTGT+TGG | 0.472777 | 2_2:+59694818 | Msa0261360:CDS |
| TGTGCAATTAGTGGTGCCTT+TGG | 0.477018 | 2_2:+59692869 | Msa0261360:CDS |
| TGCAGAATTATCATCCCTCC+AGG | 0.477663 | 2_2:+59692571 | Msa0261360:intron |
| GCAAGTGTTCCAACTGCAAA+TGG | 0.482568 | 2_2:-59692615 | None:intergenic |
| GGGTTACACTAGACTGGTTG+TGG | 0.484518 | 2_2:+59694871 | Msa0261360:CDS |
| ACTGCAAAGTATGGTGATCA+AGG | 0.485522 | 2_2:+59694467 | Msa0261360:CDS |
| ATTGGTATATGTGCAATTAG+TGG | 0.486598 | 2_2:+59692860 | Msa0261360:CDS |
| ATGTTACAGTCTTTCCTATG+TGG | 0.489292 | 2_2:+59693421 | Msa0261360:intron |
| TCTGCGCTTTAGTGGTTCAT+CGG | 0.494479 | 2_2:+59695290 | Msa0261360:three_prime_UTR |
| TCAGCTGATCTTGCAGCTGG+TGG | 0.503591 | 2_2:+59693844 | Msa0261360:CDS |
| AAAGACATCCATTGCCAAGA+AGG | 0.509411 | 2_2:-59692110 | None:intergenic |
| TCTCAATAAGCACAAACTAC+AGG | 0.510107 | 2_2:+59694917 | Msa0261360:three_prime_UTR |
| GTTTCAGCTGATCTTGCAGC+TGG | 0.510600 | 2_2:+59693841 | Msa0261360:CDS |
| GTGTTCCAACTGCAAATGGC+TGG | 0.520973 | 2_2:-59692611 | None:intergenic |
| TGTAATTAACCTTAAAGCAG+AGG | 0.522589 | 2_2:-59693467 | None:intergenic |
| TTGCAGGGGTTACACTAGAC+TGG | 0.523837 | 2_2:+59694865 | Msa0261360:CDS |
| GTGTTTAGATTAATATTCAA+AGG | 0.528049 | 2_2:+59695347 | Msa0261360:three_prime_UTR |
| ATTTCAAGAATTTCAAGAGT+GGG | 0.530371 | 2_2:-59694376 | None:intergenic |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 2_2:+59692821 | Msa0261360:CDS |
| CAAACATGAACACGCCAAGA+AGG | 0.542626 | 2_2:-59691147 | None:intergenic |
| ACATCTGGTAAAGGAGGACT+TGG | 0.542893 | 2_2:+59692830 | Msa0261360:CDS |
| ACAAACAGTGAGGTAACCAT+TGG | 0.544603 | 2_2:-59694525 | None:intergenic |
| TGCGTCATTTACACAAGGAA+GGG | 0.545584 | 2_2:+59695047 | Msa0261360:three_prime_UTR |
| TTTGCAGTGAAATAAAATGC+TGG | 0.546823 | 2_2:-59694452 | None:intergenic |
| TGTCTTTCTCAGCACTTCTG+TGG | 0.546855 | 2_2:+59691168 | Msa0261360:five_prime_UTR |
| GCATAAACCTCTAGACGTGT+TGG | 0.547583 | 2_2:-59691966 | None:intergenic |
| GGATTTCTGTCTGAAGATAC+CGG | 0.548527 | 2_2:+59694100 | Msa0261360:CDS |
| GTATAATAGAGATTAGTTCA+AGG | 0.548918 | 2_2:-59691193 | None:intergenic |
| GTTGCAGATGCTCATGTTCA+AGG | 0.549362 | 2_2:+59692893 | Msa0261360:CDS |
| TGTGGTTGATAGGCAAAGGT+TGG | 0.549746 | 2_2:+59694889 | Msa0261360:CDS |
| CAAAGTATGGTGATCAAGGT+TGG | 0.550801 | 2_2:+59694471 | Msa0261360:CDS |
| GCATTTGATAATTCTAAGGA+TGG | 0.554074 | 2_2:+59693496 | Msa0261360:CDS |
| TCATTCTTGGGGCTATCCAA+TGG | 0.554884 | 2_2:+59694509 | Msa0261360:CDS |
| TGCACACAAACAAGAGAGGA+AGG | 0.556796 | 2_2:+59693994 | Msa0261360:CDS |
| TACAGGAATAGTTGTGATTG+AGG | 0.557006 | 2_2:+59694934 | Msa0261360:three_prime_UTR |
| TGAACACGCCAAGAAGGAAG+AGG | 0.564741 | 2_2:-59691141 | None:intergenic |
| ACAAGAGAGGAAGGGAAACA+AGG | 0.569413 | 2_2:+59694003 | Msa0261360:CDS |
| TGTTCCTAAACTATGTGCTC+CGG | 0.571762 | 2_2:-59694119 | None:intergenic |
| GTATACCAGCCATTTGCAGT+TGG | 0.574201 | 2_2:+59692606 | Msa0261360:CDS |
| TAAACCTCTAGACGTGTTGG+AGG | 0.581439 | 2_2:-59691963 | None:intergenic |
| AGCATCAGAAGGATCCAAAA+CGG | 0.581586 | 2_2:+59693819 | Msa0261360:CDS |
| CTCCATGGTAGATTTATAGG+AGG | 0.592906 | 2_2:+59695111 | Msa0261360:three_prime_UTR |
| TAAAAGGGTCTGTTTCTCCA+TGG | 0.596121 | 2_2:+59695096 | Msa0261360:three_prime_UTR |
| TTTATTATTACGCTTGGACA+TGG | 0.598221 | 2_2:-59695145 | None:intergenic |
| ATGCGTCATTTACACAAGGA+AGG | 0.600520 | 2_2:+59695046 | Msa0261360:three_prime_UTR |
| TAATGTTGACATCATTCTTG+GGG | 0.600627 | 2_2:+59694498 | Msa0261360:CDS |
| AATGAATTCTGGCTTCATGT+AGG | 0.600985 | 2_2:-59692936 | None:intergenic |
| GCGTCATTTACACAAGGAAG+GGG | 0.604255 | 2_2:+59695048 | Msa0261360:three_prime_UTR |
| TGAGCCTCCAACACGTCTAG+AGG | 0.604316 | 2_2:+59691959 | Msa0261360:CDS |
| AATTTCAAGAATTTCAAGAG+TGG | 0.605836 | 2_2:-59694377 | None:intergenic |
| GAACACGCCAAGAAGGAAGA+GGG | 0.611432 | 2_2:-59691140 | None:intergenic |
| TTAGCAACATCTGGTAAAGG+AGG | 0.617570 | 2_2:+59692824 | Msa0261360:CDS |
| CAGATGCTGCCAAACCACAT+AGG | 0.618573 | 2_2:-59693435 | None:intergenic |
| TAATTGCAATGTACAATGTG+TGG | 0.621011 | 2_2:+59694333 | Msa0261360:CDS |
| CGTACAAAAGCAGCATCAGA+AGG | 0.622959 | 2_2:+59693808 | Msa0261360:CDS |
| ATGAGCATCTGCAACTCCAA+AGG | 0.623544 | 2_2:-59692885 | None:intergenic |
| AATTGCAATGTACAATGTGT+GGG | 0.632930 | 2_2:+59694334 | Msa0261360:CDS |
| GTTATGACATCTGCACCCAA+AGG | 0.634499 | 2_2:+59694548 | Msa0261360:CDS |
| AATAATTCAAGGCAGAGCCA+TGG | 0.635029 | 2_2:+59691929 | Msa0261360:exon |
| TACCTCCTATAAATCTACCA+TGG | 0.635378 | 2_2:-59695113 | None:intergenic |
| TGGAGGCTCAACGTTGACCA+TGG | 0.638186 | 2_2:-59691946 | None:intergenic |
| AAATGCATTGAAGTATGGTG+AGG | 0.655656 | 2_2:+59695211 | Msa0261360:three_prime_UTR |
| ACAAGTGTAAGCACCCTGGA+GGG | 0.662948 | 2_2:-59692585 | None:intergenic |
| GTATACAAGTGTAAGCACCC+TGG | 0.665189 | 2_2:-59692589 | None:intergenic |
| TGGTTGTGGTTGATAGGCAA+AGG | 0.669026 | 2_2:+59694885 | Msa0261360:CDS |
| GCACACAAACAAGAGAGGAA+GGG | 0.670991 | 2_2:+59693995 | Msa0261360:CDS |
| ATCATGCACACAAACAAGAG+AGG | 0.673529 | 2_2:+59693990 | Msa0261360:CDS |
| GAGCACATAGTTTAGGAACA+TGG | 0.674637 | 2_2:+59694122 | Msa0261360:CDS |
| TACAAGTGTAAGCACCCTGG+AGG | 0.676424 | 2_2:-59692586 | None:intergenic |
| TATCTTCAGACAGAAATCCA+GGG | 0.678514 | 2_2:-59694096 | None:intergenic |
| GTGTATGCGTCATTTACACA+AGG | 0.679944 | 2_2:+59695042 | Msa0261360:three_prime_UTR |
| GCAGAATTATCATCCCTCCA+GGG | 0.704317 | 2_2:+59692572 | Msa0261360:intron |
| GCAGATGCTCATGTTCAAGG+TGG | 0.722859 | 2_2:+59692896 | Msa0261360:CDS |
| ATGTCATAACACAAACAGTG+AGG | 0.743595 | 2_2:-59694535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATTATTAGCTTTTT+AGG | - | chr2_2:59693191-59693210 | None:intergenic | 10.0% |
| !!! | TTTATGTTTTAATTTATTGT+AGG | + | chr2_2:59694785-59694804 | Msa0261360:intron | 10.0% |
| !!! | TTATGTTTTAATTTATTGTA+GGG | + | chr2_2:59694786-59694805 | Msa0261360:intron | 10.0% |
| !!! | CAATTTTTTTAACAAATAAA+AGG | + | chr2_2:59695080-59695099 | Msa0261360:three_prime_UTR | 10.0% |
| !! | ATAACAATTAAATTACGTAA+AGG | - | chr2_2:59691265-59691284 | None:intergenic | 15.0% |
| !! | TAATAGAAATTAAAACTTCT+GGG | - | chr2_2:59691414-59691433 | None:intergenic | 15.0% |
| !! | TTAATAGAAATTAAAACTTC+TGG | - | chr2_2:59691415-59691434 | None:intergenic | 15.0% |
| !!! | GAAGTTTTAATTTCTATTAA+TGG | + | chr2_2:59691415-59691434 | Msa0261360:intron | 15.0% |
| !! | TATATGATATCAAAAAATTG+TGG | - | chr2_2:59691560-59691579 | None:intergenic | 15.0% |
| !! | TACATGCATTTATAATAATT+TGG | - | chr2_2:59691721-59691740 | None:intergenic | 15.0% |
| !!! | ATATATATTTCTAGTTATGT+TGG | + | chr2_2:59691825-59691844 | Msa0261360:intron | 15.0% |
| !!! | TTCATTTTTTTTCTTGTTAT+TGG | + | chr2_2:59692049-59692068 | Msa0261360:intron | 15.0% |
| !!! | GCTAATAATTTTAATTTCTA+TGG | + | chr2_2:59693196-59693215 | Msa0261360:intron | 15.0% |
| !!! | AATAATTTTAATTTCTATGG+TGG | + | chr2_2:59693199-59693218 | Msa0261360:intron | 15.0% |
| !!! | ATTAGATGAAATTTTGATTA+TGG | - | chr2_2:59693574-59693593 | None:intergenic | 15.0% |
| !! | AAAATTACCAAAGATTTAAA+AGG | - | chr2_2:59694166-59694185 | None:intergenic | 15.0% |
| !! | TATTATAGTAGTGTTTAATT+TGG | + | chr2_2:59694595-59694614 | Msa0261360:intron | 15.0% |
| !! | CATAAATATTAATGTGAATT+TGG | - | chr2_2:59694771-59694790 | None:intergenic | 15.0% |
| !! | TAAAAACGAAAAATAGAAAT+TGG | + | chr2_2:59694966-59694985 | Msa0261360:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTATTATTACGCT+TGG | - | chr2_2:59695154-59695173 | None:intergenic | 15.0% |
| !! | AAGCGTAATAATAAAAAAAA+AGG | + | chr2_2:59695153-59695172 | Msa0261360:three_prime_UTR | 15.0% |
| !! | TCCTTATAAATCAACAAAAA+TGG | - | chr2_2:59691609-59691628 | None:intergenic | 20.0% |
| !! | AAGTATATAACCTCAATTTA+AGG | - | chr2_2:59691884-59691903 | None:intergenic | 20.0% |
| !! | GATTGAAAAAGAATAATTCA+AGG | + | chr2_2:59691918-59691937 | Msa0261360:five_prime_UTR | 20.0% |
| !!! | TACTTTTATTTGCTTAAGAA+TGG | + | chr2_2:59692006-59692025 | Msa0261360:intron | 20.0% |
| !! | TTCATAAATCAATTACATAC+CGG | - | chr2_2:59692186-59692205 | None:intergenic | 20.0% |
| !!! | ACAATTTTAAAATAGAAGTC+TGG | - | chr2_2:59692261-59692280 | None:intergenic | 20.0% |
| !!! | TTTTTTCATAACCACTTTTT+TGG | + | chr2_2:59692701-59692720 | Msa0261360:intron | 20.0% |
| !! | ACAATTAGTTGAATAGATAT+AGG | - | chr2_2:59692741-59692760 | None:intergenic | 20.0% |
| !! | ATCAAACATAAACGAAATTA+TGG | - | chr2_2:59693074-59693093 | None:intergenic | 20.0% |
| !! | TTTATGTTTGATTCTATCTT+TGG | + | chr2_2:59693082-59693101 | Msa0261360:intron | 20.0% |
| !! | AAACCAAACATAACAATTTA+TGG | - | chr2_2:59693129-59693148 | None:intergenic | 20.0% |
| !!! | GATTTTTATCGATTTATGTT+AGG | - | chr2_2:59693280-59693299 | None:intergenic | 20.0% |
| !!! | ATTTTACGTTCAATTAATTC+AGG | + | chr2_2:59693331-59693350 | Msa0261360:intron | 20.0% |
| !! | CTAAATAGTATATAGAGTAA+TGG | - | chr2_2:59693667-59693686 | None:intergenic | 20.0% |
| !!! | TATTTCACAATTGGTATTTT+AGG | - | chr2_2:59693784-59693803 | None:intergenic | 20.0% |
| !!! | ATAATAATTTCCCTTTTTTC+AGG | + | chr2_2:59693961-59693980 | Msa0261360:intron | 20.0% |
| !!! | AGTTGTGCTTATAATTTTTT+AGG | + | chr2_2:59694297-59694316 | Msa0261360:intron | 20.0% |
| !!! | TATTTATGCTTTAAGGATAT+TGG | - | chr2_2:59694724-59694743 | None:intergenic | 20.0% |
| !! | TTTGGATTTCATATAGTATA+GGG | - | chr2_2:59694753-59694772 | None:intergenic | 20.0% |
| !! | ATTTGGATTTCATATAGTAT+AGG | - | chr2_2:59694754-59694773 | None:intergenic | 20.0% |
| !!! | CTATTTTTAGAGATATGATA+TGG | + | chr2_2:59694999-59695018 | Msa0261360:three_prime_UTR | 20.0% |
| !! | ATTTCCATGTAATTTCAAAA+TGG | + | chr2_2:59695242-59695261 | Msa0261360:three_prime_UTR | 20.0% |
| !! | GTATAATAGAGATTAGTTCA+AGG | - | chr2_2:59691196-59691215 | None:intergenic | 25.0% |
| ! | AAGATAATTAGAGAAGAAGA+GGG | - | chr2_2:59691239-59691258 | None:intergenic | 25.0% |
| ! | AAAGATAATTAGAGAAGAAG+AGG | - | chr2_2:59691240-59691259 | None:intergenic | 25.0% |
| ! | CGTAATTTAATTGTTATGCT+TGG | + | chr2_2:59691268-59691287 | Msa0261360:intron | 25.0% |
| ! | CATAAAAGGAAGAAAGATAT+TGG | + | chr2_2:59691331-59691350 | Msa0261360:intron | 25.0% |
| ! | ACTTTGATTCAAAATCTTGA+TGG | - | chr2_2:59691523-59691542 | None:intergenic | 25.0% |
| !!! | GCCATTTTTGTTGATTTATA+AGG | + | chr2_2:59691605-59691624 | Msa0261360:intron | 25.0% |
| ! | AACTGTGTACGTAAATTTAA+TGG | + | chr2_2:59691760-59691779 | Msa0261360:intron | 25.0% |
| ! | ATATACTTTCTTGTAGAACT+TGG | + | chr2_2:59691896-59691915 | Msa0261360:intron | 25.0% |
| ! | TATTTGCTTAAGAATGGAAA+TGG | + | chr2_2:59692012-59692031 | Msa0261360:intron | 25.0% |
| !!! | TTCTTGTTATTGGTATTCAT+AGG | + | chr2_2:59692059-59692078 | Msa0261360:intron | 25.0% |
| !!! | TCTTGTTATTGGTATTCATA+GGG | + | chr2_2:59692060-59692079 | Msa0261360:intron | 25.0% |
| ! | TCATAAATCAATTACATACC+GGG | - | chr2_2:59692185-59692204 | None:intergenic | 25.0% |
| !! | AAATTGTTTCTTACAAACCA+AGG | + | chr2_2:59692274-59692293 | Msa0261360:intron | 25.0% |
| !! | TTGAACAATTTGTCATTTAG+TGG | - | chr2_2:59692326-59692345 | None:intergenic | 25.0% |
| !!! | AAATATTTTTTGTGAACCTC+TGG | - | chr2_2:59692446-59692465 | None:intergenic | 25.0% |
| ! | TGCTATATTGTCTTATAATG+AGG | + | chr2_2:59692635-59692654 | Msa0261360:CDS | 25.0% |
| ! | CAAAAGTCAATACTAGATTA+AGG | + | chr2_2:59692658-59692677 | Msa0261360:intron | 25.0% |
| !! | AAAAAAGAGTATATCCAAAC+AGG | - | chr2_2:59692686-59692705 | None:intergenic | 25.0% |
| ! | TACTATTAACACCAAAAAAG+TGG | - | chr2_2:59692715-59692734 | None:intergenic | 25.0% |
| !!! | TCCAATAAATTTGTTGTAGT+TGG | + | chr2_2:59692799-59692818 | Msa0261360:intron | 25.0% |
| ! | TCCAACTACAACAAATTTAT+TGG | - | chr2_2:59692803-59692822 | None:intergenic | 25.0% |
| !! | TCGCAATTTAGAACTATAAT+CGG | - | chr2_2:59692975-59692994 | None:intergenic | 25.0% |
| ! | TGACCATAAATTGTTATGTT+TGG | + | chr2_2:59693123-59693142 | Msa0261360:intron | 25.0% |
| ! | ATCTATGATACTTACATCTA+TGG | + | chr2_2:59693392-59693411 | Msa0261360:intron | 25.0% |
| ! | CAATAGCAACAAATAAGAAT+TGG | - | chr2_2:59693621-59693640 | None:intergenic | 25.0% |
| ! | GAAAGAAATAGTACTTCTTT+AGG | - | chr2_2:59693883-59693902 | None:intergenic | 25.0% |
| ! | ATAGTGTCAATGCATAAATT+AGG | - | chr2_2:59694069-59694088 | None:intergenic | 25.0% |
| ! | ATTTCAAGAATTTCAAGAGT+GGG | - | chr2_2:59694379-59694398 | None:intergenic | 25.0% |
| ! | AATTTCAAGAATTTCAAGAG+TGG | - | chr2_2:59694380-59694399 | None:intergenic | 25.0% |
| ! | ACTCTTGAAATTCTTGAAAT+TGG | + | chr2_2:59694379-59694398 | Msa0261360:CDS | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | + | chr2_2:59694458-59694477 | Msa0261360:CDS | 25.0% |
| ! | ATAATGTTGACATCATTCTT+GGG | + | chr2_2:59694497-59694516 | Msa0261360:CDS | 25.0% |
| ! | ACTACTATAATATACTCTCA+AGG | - | chr2_2:59694587-59694606 | None:intergenic | 25.0% |
| ! | AGAGATATGATATGGTTAAA+TGG | + | chr2_2:59695007-59695026 | Msa0261360:three_prime_UTR | 25.0% |
| ! | TAATTTCAAAATGGCTGTAT+TGG | + | chr2_2:59695251-59695270 | Msa0261360:three_prime_UTR | 25.0% |
| ! | TCTATCTTCCTTTTTGTGTA+TGG | + | chr2_2:59691466-59691485 | Msa0261360:intron | 30.0% |
| TACATCTTGCAAATCAAGTA+TGG | - | chr2_2:59691499-59691518 | None:intergenic | 30.0% | |
| TCTAGAGGTTTATGCTTAAT+TGG | + | chr2_2:59691974-59691993 | Msa0261360:intron | 30.0% | |
| TTACTACATTTACTTGTTCC+CGG | + | chr2_2:59692164-59692183 | Msa0261360:CDS | 30.0% | |
| ATCAAGAAGTAAGTAAAGTC+TGG | - | chr2_2:59692224-59692243 | None:intergenic | 30.0% | |
| AAAATAGAAGTCTGGTAATC+TGG | - | chr2_2:59692253-59692272 | None:intergenic | 30.0% | |
| TAGTCAAACTTTACTTACTC+CGG | + | chr2_2:59692382-59692401 | Msa0261360:intron | 30.0% | |
| TTGAATTACACCAACATACA+AGG | - | chr2_2:59692492-59692511 | None:intergenic | 30.0% | |
| ACTTTGATTCCTTTACCATT+AGG | + | chr2_2:59692763-59692782 | Msa0261360:intron | 30.0% | |
| GAAAATCAAAACCATCCTAA+TGG | - | chr2_2:59692781-59692800 | None:intergenic | 30.0% | |
| ATTGGTATATGTGCAATTAG+TGG | + | chr2_2:59692860-59692879 | Msa0261360:CDS | 30.0% | |
| ! | TTTTGTATCCATACATCTGT+CGG | - | chr2_2:59693237-59693256 | None:intergenic | 30.0% |
| TAAGCGTGAATTTGATTATG+CGG | - | chr2_2:59693373-59693392 | None:intergenic | 30.0% | |
| TGTAATTAACCTTAAAGCAG+AGG | - | chr2_2:59693470-59693489 | None:intergenic | 30.0% | |
| ! | AGCAGCATTTGATAATTCTA+AGG | + | chr2_2:59693492-59693511 | Msa0261360:CDS | 30.0% |
| ! | GCATTTGATAATTCTAAGGA+TGG | + | chr2_2:59693496-59693515 | Msa0261360:CDS | 30.0% |
| AAGCTCAAAGAATGTTGATA+TGG | - | chr2_2:59693731-59693750 | None:intergenic | 30.0% | |
| ! | GTACTTCTTTAGGTATTGTT+TGG | - | chr2_2:59693873-59693892 | None:intergenic | 30.0% |
| TTACCAAAGATTTAAAAGGC+AGG | - | chr2_2:59694162-59694181 | None:intergenic | 30.0% | |
| TTTATCTACAGCAATCCATT+AGG | - | chr2_2:59694242-59694261 | None:intergenic | 30.0% | |
| TAATTGCAATGTACAATGTG+TGG | + | chr2_2:59694333-59694352 | Msa0261360:CDS | 30.0% | |
| AATTGCAATGTACAATGTGT+GGG | + | chr2_2:59694334-59694353 | Msa0261360:CDS | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | - | chr2_2:59694455-59694474 | None:intergenic | 30.0% | |
| GATAATGTTGACATCATTCT+TGG | + | chr2_2:59694496-59694515 | Msa0261360:CDS | 30.0% | |
| TAATGTTGACATCATTCTTG+GGG | + | chr2_2:59694498-59694517 | Msa0261360:CDS | 30.0% | |
| !! | AGTAGTGTTTAATTTGGAAC+CGG | + | chr2_2:59694601-59694620 | Msa0261360:intron | 30.0% |
| !! | TTATGCTTTAAGGATATTGG+TGG | - | chr2_2:59694721-59694740 | None:intergenic | 30.0% |
| GATCTGGTATTTATGCTTTA+AGG | - | chr2_2:59694731-59694750 | None:intergenic | 30.0% | |
| TTTCATATAGTATAGGGATC+TGG | - | chr2_2:59694747-59694766 | None:intergenic | 30.0% | |
| TTTCTCCATGGTAGATTTAT+AGG | + | chr2_2:59695108-59695127 | Msa0261360:three_prime_UTR | 30.0% | |
| TTTATTATTACGCTTGGACA+TGG | - | chr2_2:59695148-59695167 | None:intergenic | 30.0% | |
| !!! | GCATTTTGTGTTAATTTGCT+TGG | - | chr2_2:59695197-59695216 | None:intergenic | 30.0% |
| ACACAAAATGCATTGAAGTA+TGG | + | chr2_2:59695206-59695225 | Msa0261360:three_prime_UTR | 30.0% | |
| !!! | ACAGCCATTTTGAAATTACA+TGG | - | chr2_2:59695249-59695268 | None:intergenic | 30.0% |
| GATAGAAGAGCAAAGACTTT+AGG | - | chr2_2:59691452-59691471 | None:intergenic | 35.0% | |
| GTGATAGACCATACACAAAA+AGG | - | chr2_2:59691477-59691496 | None:intergenic | 35.0% | |
| CAGATTGAAGCCTTAAATTG+AGG | + | chr2_2:59691871-59691890 | Msa0261360:intron | 35.0% | |
| GGGAAAATATGCTGCAATAT+TGG | + | chr2_2:59692080-59692099 | Msa0261360:intron | 35.0% | |
| ATATTGGTATGCTTCCTTCT+TGG | + | chr2_2:59692096-59692115 | Msa0261360:CDS | 35.0% | |
| ACCAAGGAATTTGACTCAAA+TGG | + | chr2_2:59692290-59692309 | Msa0261360:intron | 35.0% | |
| ACCATTTGAGTCAAATTCCT+TGG | - | chr2_2:59692294-59692313 | None:intergenic | 35.0% | |
| ! | ATCTGAGTTTGATTTCTGAG+TGG | + | chr2_2:59692350-59692369 | Msa0261360:intron | 35.0% |
| ACTAGATTAAGGAACCTGTT+TGG | + | chr2_2:59692669-59692688 | Msa0261360:intron | 35.0% | |
| TGATTCCTTTACCATTAGGA+TGG | + | chr2_2:59692767-59692786 | Msa0261360:intron | 35.0% | |
| CAAAACCATCCTAATGGTAA+AGG | - | chr2_2:59692775-59692794 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | + | chr2_2:59692815-59692834 | Msa0261360:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | + | chr2_2:59692821-59692840 | Msa0261360:CDS | 35.0% | |
| !! | AATGAATTCTGGCTTCATGT+AGG | - | chr2_2:59692939-59692958 | None:intergenic | 35.0% |
| GCGATTCATAATTGCAATTG+TGG | + | chr2_2:59692991-59693010 | Msa0261360:intron | 35.0% | |
| ATTCAATTCCGACAGATGTA+TGG | + | chr2_2:59693226-59693245 | Msa0261360:intron | 35.0% | |
| ATGTTACAGTCTTTCCTATG+TGG | + | chr2_2:59693421-59693440 | Msa0261360:intron | 35.0% | |
| ! | TTCTAAGGATGGTCTTAGAA+AGG | + | chr2_2:59693507-59693526 | Msa0261360:intron | 35.0% |
| GTACGGTAGTATTTCACAAT+TGG | - | chr2_2:59693793-59693812 | None:intergenic | 35.0% | |
| ! | TGAGAAAGTTTGAGACACAT+TGG | - | chr2_2:59693920-59693939 | None:intergenic | 35.0% |
| !!! | ATTTCCCTTTTTTCAGGATG+AGG | + | chr2_2:59693967-59693986 | Msa0261360:intron | 35.0% |
| TGATCCTCATCCTGAAAAAA+GGG | - | chr2_2:59693974-59693993 | None:intergenic | 35.0% | |
| ATGATCCTCATCCTGAAAAA+AGG | - | chr2_2:59693975-59693994 | None:intergenic | 35.0% | |
| ! | TTGACACTATCTATTTTCCC+TGG | + | chr2_2:59694079-59694098 | Msa0261360:CDS | 35.0% |
| TATCTTCAGACAGAAATCCA+GGG | - | chr2_2:59694099-59694118 | None:intergenic | 35.0% | |
| ! | CTACCTGCCTTTTAAATCTT+TGG | + | chr2_2:59694156-59694175 | Msa0261360:intron | 35.0% |
| ! | TTTTACGAATCGAAACGACA+AGG | + | chr2_2:59694209-59694228 | Msa0261360:intron | 35.0% |
| TACAATGTGTGGGATCTAAT+AGG | + | chr2_2:59694344-59694363 | Msa0261360:CDS | 35.0% | |
| ATGTCATAACACAAACAGTG+AGG | - | chr2_2:59694538-59694557 | None:intergenic | 35.0% | |
| GGTCTTACCTTATAACCTTT+GGG | - | chr2_2:59694566-59694585 | None:intergenic | 35.0% | |
| AGGTCTTACCTTATAACCTT+TGG | - | chr2_2:59694567-59694586 | None:intergenic | 35.0% | |
| GATGGCTGTTTGATCAAAAT+CGG | + | chr2_2:59694663-59694682 | Msa0261360:intron | 35.0% | |
| TTGATCAAAATCGGATAGTC+TGG | + | chr2_2:59694672-59694691 | Msa0261360:intron | 35.0% | |
| !! | TTTCCCAAAGCATTTTGTTC+TGG | - | chr2_2:59694813-59694832 | None:intergenic | 35.0% |
| !! | AAATGCTTTGGGAAACTTGT+TGG | + | chr2_2:59694818-59694837 | Msa0261360:CDS | 35.0% |
| !! | TTGTTGGTGTTGTTTCTACT+TGG | + | chr2_2:59694834-59694853 | Msa0261360:CDS | 35.0% |
| !!! | TACTTGGAGGTATTTTTGCA+GGG | + | chr2_2:59694850-59694869 | Msa0261360:CDS | 35.0% |
| TCTCAATAAGCACAAACTAC+AGG | + | chr2_2:59694917-59694936 | Msa0261360:three_prime_UTR | 35.0% | |
| TACAGGAATAGTTGTGATTG+AGG | + | chr2_2:59694934-59694953 | Msa0261360:three_prime_UTR | 35.0% | |
| GGTTAAATGGCACAACAAAA+AGG | + | chr2_2:59695020-59695039 | Msa0261360:three_prime_UTR | 35.0% | |
| TACCTCCTATAAATCTACCA+TGG | - | chr2_2:59695116-59695135 | None:intergenic | 35.0% | |
| AAATGCATTGAAGTATGGTG+AGG | + | chr2_2:59695211-59695230 | Msa0261360:three_prime_UTR | 35.0% | |
| ! | TTGAATTTTCTGCGCTTTAG+TGG | + | chr2_2:59695282-59695301 | Msa0261360:three_prime_UTR | 35.0% |
| GTACACTCGTGTGTCATAAA+AGG | + | chr2_2:59691317-59691336 | Msa0261360:intron | 40.0% | |
| AATAATTCAAGGCAGAGCCA+TGG | + | chr2_2:59691929-59691948 | Msa0261360:exon | 40.0% | |
| AAAGACATCCATTGCCAAGA+AGG | - | chr2_2:59692113-59692132 | None:intergenic | 40.0% | |
| ! | GCAATGGATGTCTTTTCTCT+TGG | + | chr2_2:59692118-59692137 | Msa0261360:CDS | 40.0% |
| ! | CAGTAATCTGGAGTTCAATC+CGG | - | chr2_2:59692404-59692423 | None:intergenic | 40.0% |
| GGATTGAACTCCAGATTACT+GGG | + | chr2_2:59692403-59692422 | Msa0261360:intron | 40.0% | |
| GAAAATGAGTCCCAGTAATC+TGG | - | chr2_2:59692416-59692435 | None:intergenic | 40.0% | |
| ATGTGCTTCTCCTTGTATGT+TGG | + | chr2_2:59692479-59692498 | Msa0261360:intron | 40.0% | |
| AGGGATGATAATTCTGCACA+CGG | - | chr2_2:59692569-59692588 | None:intergenic | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | + | chr2_2:59692824-59692843 | Msa0261360:CDS | 40.0% | |
| ! | GGAGGACTTGGAACTTTTAT+TGG | + | chr2_2:59692842-59692861 | Msa0261360:CDS | 40.0% |
| CATGTTCAAGGTGGAATGAT+TGG | + | chr2_2:59692905-59692924 | Msa0261360:CDS | 40.0% | |
| CATGAAGCCAGAATTCATTC+AGG | + | chr2_2:59692940-59692959 | Msa0261360:CDS | 40.0% | |
| TAGCTGACCTGAATGAATTC+TGG | - | chr2_2:59692950-59692969 | None:intergenic | 40.0% | |
| ! | CTGCATTTTACGCGATATCA+AGG | + | chr2_2:59693023-59693042 | Msa0261360:intron | 40.0% |
| ACAGTCTTTCCTATGTGGTT+TGG | + | chr2_2:59693426-59693445 | Msa0261360:intron | 40.0% | |
| GTGCATTAACCTCTGCTTTA+AGG | + | chr2_2:59693458-59693477 | Msa0261360:CDS | 40.0% | |
| !!! | CTTCTGATGCTGCTTTTGTA+CGG | - | chr2_2:59693810-59693829 | None:intergenic | 40.0% |
| AGCATCAGAAGGATCCAAAA+CGG | + | chr2_2:59693819-59693838 | Msa0261360:CDS | 40.0% | |
| ! | AAGATCAGCTGAAACCGTTT+TGG | - | chr2_2:59693836-59693855 | None:intergenic | 40.0% |
| ATCATGCACACAAACAAGAG+AGG | + | chr2_2:59693990-59694009 | Msa0261360:CDS | 40.0% | |
| GTATCTTCAGACAGAAATCC+AGG | - | chr2_2:59694100-59694119 | None:intergenic | 40.0% | |
| GGATTTCTGTCTGAAGATAC+CGG | + | chr2_2:59694100-59694119 | Msa0261360:CDS | 40.0% | |
| TGTTCCTAAACTATGTGCTC+CGG | - | chr2_2:59694122-59694141 | None:intergenic | 40.0% | |
| GAGCACATAGTTTAGGAACA+TGG | + | chr2_2:59694122-59694141 | Msa0261360:CDS | 40.0% | |
| ACTGCAAAGTATGGTGATCA+AGG | + | chr2_2:59694467-59694486 | Msa0261360:CDS | 40.0% | |
| CAAAGTATGGTGATCAAGGT+TGG | + | chr2_2:59694471-59694490 | Msa0261360:CDS | 40.0% | |
| ACAAACAGTGAGGTAACCAT+TGG | - | chr2_2:59694528-59694547 | None:intergenic | 40.0% | |
| ATCTGCACCCAAAGGTTATA+AGG | + | chr2_2:59694556-59694575 | Msa0261360:CDS | 40.0% | |
| ATATCTCGAATGCGTGAATG+CGG | - | chr2_2:59694642-59694661 | None:intergenic | 40.0% | |
| !!! | ACCGTTCGGTTTTGATTGAA+CGG | + | chr2_2:59694695-59694714 | Msa0261360:intron | 40.0% |
| GGTCCAGAACAAAATGCTTT+GGG | + | chr2_2:59694807-59694826 | Msa0261360:CDS | 40.0% | |
| !! | TTGGTGTTGTTTCTACTTGG+AGG | + | chr2_2:59694837-59694856 | Msa0261360:CDS | 40.0% |
| !!! | CTACTTGGAGGTATTTTTGC+AGG | + | chr2_2:59694849-59694868 | Msa0261360:CDS | 40.0% |
| !!! | ACTTGGAGGTATTTTTGCAG+GGG | + | chr2_2:59694851-59694870 | Msa0261360:CDS | 40.0% |
| GTGTATGCGTCATTTACACA+AGG | + | chr2_2:59695042-59695061 | Msa0261360:three_prime_UTR | 40.0% | |
| ATGCGTCATTTACACAAGGA+AGG | + | chr2_2:59695046-59695065 | Msa0261360:three_prime_UTR | 40.0% | |
| TGCGTCATTTACACAAGGAA+GGG | + | chr2_2:59695047-59695066 | Msa0261360:three_prime_UTR | 40.0% | |
| ! | TAAAAGGGTCTGTTTCTCCA+TGG | + | chr2_2:59695096-59695115 | Msa0261360:three_prime_UTR | 40.0% |
| CTCCATGGTAGATTTATAGG+AGG | + | chr2_2:59695111-59695130 | Msa0261360:three_prime_UTR | 40.0% | |
| CAAACATGAACACGCCAAGA+AGG | - | chr2_2:59691150-59691169 | None:intergenic | 45.0% | |
| TGTCTTTCTCAGCACTTCTG+TGG | + | chr2_2:59691168-59691187 | Msa0261360:five_prime_UTR | 45.0% | |
| TAAACCTCTAGACGTGTTGG+AGG | - | chr2_2:59691966-59691985 | None:intergenic | 45.0% | |
| GCATAAACCTCTAGACGTGT+TGG | - | chr2_2:59691969-59691988 | None:intergenic | 45.0% | |
| GTATGCTTCCTTCTTGGCAA+TGG | + | chr2_2:59692102-59692121 | Msa0261360:CDS | 45.0% | |
| CGGATTGAACTCCAGATTAC+TGG | + | chr2_2:59692402-59692421 | Msa0261360:intron | 45.0% | |
| ! | CTCATTTTCCAGAGAACCAG+AGG | + | chr2_2:59692427-59692446 | Msa0261360:intron | 45.0% |
| !! | TTTGTGAACCTCTGGTTCTC+TGG | - | chr2_2:59692438-59692457 | None:intergenic | 45.0% |
| TGCAGAATTATCATCCCTCC+AGG | + | chr2_2:59692571-59692590 | Msa0261360:intron | 45.0% | |
| GCAGAATTATCATCCCTCCA+GGG | + | chr2_2:59692572-59692591 | Msa0261360:intron | 45.0% | |
| GTATACAAGTGTAAGCACCC+TGG | - | chr2_2:59692592-59692611 | None:intergenic | 45.0% | |
| GTATACCAGCCATTTGCAGT+TGG | + | chr2_2:59692606-59692625 | Msa0261360:CDS | 45.0% | |
| GCAAGTGTTCCAACTGCAAA+TGG | - | chr2_2:59692618-59692637 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGACT+TGG | + | chr2_2:59692830-59692849 | Msa0261360:CDS | 45.0% | |
| TGTGCAATTAGTGGTGCCTT+TGG | + | chr2_2:59692869-59692888 | Msa0261360:CDS | 45.0% | |
| ATGAGCATCTGCAACTCCAA+AGG | - | chr2_2:59692888-59692907 | None:intergenic | 45.0% | |
| GTTGCAGATGCTCATGTTCA+AGG | + | chr2_2:59692893-59692912 | Msa0261360:CDS | 45.0% | |
| CGTACAAAAGCAGCATCAGA+AGG | + | chr2_2:59693808-59693827 | Msa0261360:CDS | 45.0% | |
| TGCACACAAACAAGAGAGGA+AGG | + | chr2_2:59693994-59694013 | Msa0261360:CDS | 45.0% | |
| GCACACAAACAAGAGAGGAA+GGG | + | chr2_2:59693995-59694014 | Msa0261360:CDS | 45.0% | |
| ACAAGAGAGGAAGGGAAACA+AGG | + | chr2_2:59694003-59694022 | Msa0261360:CDS | 45.0% | |
| GATACCGGAGCACATAGTTT+AGG | + | chr2_2:59694115-59694134 | Msa0261360:CDS | 45.0% | |
| TACAGCAATCCATTAGGCGT+TGG | - | chr2_2:59694236-59694255 | None:intergenic | 45.0% | |
| TCATTCTTGGGGCTATCCAA+TGG | + | chr2_2:59694509-59694528 | Msa0261360:CDS | 45.0% | |
| GTTATGACATCTGCACCCAA+AGG | + | chr2_2:59694548-59694567 | Msa0261360:CDS | 45.0% | |
| TATCTCGAATGCGTGAATGC+GGG | - | chr2_2:59694641-59694660 | None:intergenic | 45.0% | |
| TCACGCATTCGAGATATCGA+TGG | + | chr2_2:59694645-59694664 | Msa0261360:intron | 45.0% | |
| GCCGTTCAATCAAAACCGAA+CGG | - | chr2_2:59694699-59694718 | None:intergenic | 45.0% | |
| GGGTCCAGAACAAAATGCTT+TGG | + | chr2_2:59694806-59694825 | Msa0261360:intron | 45.0% | |
| ! | CTAGACTGGTTGTGGTTGAT+AGG | + | chr2_2:59694879-59694898 | Msa0261360:CDS | 45.0% |
| !! | TGGTTGTGGTTGATAGGCAA+AGG | + | chr2_2:59694885-59694904 | Msa0261360:CDS | 45.0% |
| !! | TGTGGTTGATAGGCAAAGGT+TGG | + | chr2_2:59694889-59694908 | Msa0261360:CDS | 45.0% |
| GCGTCATTTACACAAGGAAG+GGG | + | chr2_2:59695048-59695067 | Msa0261360:three_prime_UTR | 45.0% | |
| TCTGCGCTTTAGTGGTTCAT+CGG | + | chr2_2:59695290-59695309 | Msa0261360:three_prime_UTR | 45.0% | |
| !!! | ATATATATATTTTTTCTTTT+TGG | - | chr2_2:59691811-59691830 | None:intergenic | 5.0% |
| !!! | AATTTGAAATTAAAATAAAA+TGG | - | chr2_2:59694190-59694209 | None:intergenic | 5.0% |
| !!! | AATTTTTTTAACAAATAAAA+GGG | + | chr2_2:59695081-59695100 | Msa0261360:three_prime_UTR | 5.0% |
| GACTCTTCCCTCTTCCTTCT+TGG | + | chr2_2:59691133-59691152 | Msa0261360:five_prime_UTR | 50.0% | |
| GAACACGCCAAGAAGGAAGA+GGG | - | chr2_2:59691143-59691162 | None:intergenic | 50.0% | |
| TGAACACGCCAAGAAGGAAG+AGG | - | chr2_2:59691144-59691163 | None:intergenic | 50.0% | |
| ACAAGTGTAAGCACCCTGGA+GGG | - | chr2_2:59692588-59692607 | None:intergenic | 50.0% | |
| TACAAGTGTAAGCACCCTGG+AGG | - | chr2_2:59692589-59692608 | None:intergenic | 50.0% | |
| GTGTTCCAACTGCAAATGGC+TGG | - | chr2_2:59692614-59692633 | None:intergenic | 50.0% | |
| GCAGATGCTCATGTTCAAGG+TGG | + | chr2_2:59692896-59692915 | Msa0261360:CDS | 50.0% | |
| CAGATGCTGCCAAACCACAT+AGG | - | chr2_2:59693438-59693457 | None:intergenic | 50.0% | |
| ! | CTATGTGGTTTGGCAGCATC+TGG | + | chr2_2:59693436-59693455 | Msa0261360:CDS | 50.0% |
| GTTTCAGCTGATCTTGCAGC+TGG | + | chr2_2:59693841-59693860 | Msa0261360:CDS | 50.0% | |
| ! | TTAATTTGGAACCGGCTCCC+TGG | + | chr2_2:59694609-59694628 | Msa0261360:intron | 50.0% |
| ! | TAATTTGGAACCGGCTCCCT+GGG | + | chr2_2:59694610-59694629 | Msa0261360:intron | 50.0% |
| ATCGGATAGTCTGGACCGTT+CGG | + | chr2_2:59694681-59694700 | Msa0261360:intron | 50.0% | |
| TTGCAGGGGTTACACTAGAC+TGG | + | chr2_2:59694865-59694884 | Msa0261360:CDS | 50.0% | |
| ! | GGGTTACACTAGACTGGTTG+TGG | + | chr2_2:59694871-59694890 | Msa0261360:CDS | 50.0% |
| TGGAGGCTCAACGTTGACCA+TGG | - | chr2_2:59691949-59691968 | None:intergenic | 55.0% | |
| TGAGCCTCCAACACGTCTAG+AGG | + | chr2_2:59691959-59691978 | Msa0261360:CDS | 55.0% | |
| TCAGCTGATCTTGCAGCTGG+TGG | + | chr2_2:59693844-59693863 | Msa0261360:CDS | 55.0% | |
| CGACAAGGACCAACGCCTAA+TGG | + | chr2_2:59694224-59694243 | Msa0261360:intron | 55.0% | |
| ! | AATTTGGAACCGGCTCCCTG+GGG | + | chr2_2:59694611-59694630 | Msa0261360:intron | 55.0% |
| GTGAATGCGGGAAATCCCCA+GGG | - | chr2_2:59694629-59694648 | None:intergenic | 55.0% | |
| CGTGAATGCGGGAAATCCCC+AGG | - | chr2_2:59694630-59694649 | None:intergenic | 60.0% | |
| GCGGGAAATCCCCAGGGAGC+CGG | - | chr2_2:59694623-59694642 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 59691078 | 59695369 | 59691078 | ID=Msa0261360;Name=Msa0261360 |
| chr2_2 | mRNA | 59691078 | 59695369 | 59691078 | ID=Msa0261360-mRNA-1;Parent=Msa0261360;Name=Msa0261360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=181|0.77|0.8|1|0.88|0.8|10|455|385 |
| chr2_2 | exon | 59691078 | 59691222 | 59691078 | ID=Msa0261360-mRNA-1:exon:18386;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59691912 | 59691980 | 59691912 | ID=Msa0261360-mRNA-1:exon:18387;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59692081 | 59692185 | 59692081 | ID=Msa0261360-mRNA-1:exon:18388;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59692576 | 59692662 | 59692576 | ID=Msa0261360-mRNA-1:exon:18389;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59692818 | 59692961 | 59692818 | ID=Msa0261360-mRNA-1:exon:18390;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59693430 | 59693517 | 59693430 | ID=Msa0261360-mRNA-1:exon:18391;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59693716 | 59693888 | 59693716 | ID=Msa0261360-mRNA-1:exon:18392;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59693983 | 59694143 | 59693983 | ID=Msa0261360-mRNA-1:exon:18393;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59694319 | 59694577 | 59694319 | ID=Msa0261360-mRNA-1:exon:18394;Parent=Msa0261360-mRNA-1 |
| chr2_2 | exon | 59694807 | 59695369 | 59694807 | ID=Msa0261360-mRNA-1:exon:18395;Parent=Msa0261360-mRNA-1 |
| chr2_2 | five_prime_UTR | 59691078 | 59691222 | 59691078 | ID=Msa0261360-mRNA-1:five_prime_utr;Parent=Msa0261360-mRNA-1 |
| chr2_2 | five_prime_UTR | 59691912 | 59691947 | 59691912 | ID=Msa0261360-mRNA-1:five_prime_utr;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59691948 | 59691980 | 59691948 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59692081 | 59692185 | 59692081 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59692576 | 59692662 | 59692576 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59692818 | 59692961 | 59692818 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59693430 | 59693517 | 59693430 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59693716 | 59693888 | 59693716 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59693983 | 59694143 | 59693983 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59694319 | 59694577 | 59694319 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | CDS | 59694807 | 59694914 | 59694807 | ID=Msa0261360-mRNA-1:cds;Parent=Msa0261360-mRNA-1 |
| chr2_2 | three_prime_UTR | 59694915 | 59695369 | 59694915 | ID=Msa0261360-mRNA-1:three_prime_utr;Parent=Msa0261360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
