Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298780 | XP_013462985.1 | 96.060 | 533 | 21 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1048 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298780 | sp|Q8GRL7|TBCE_ARATH | 62.264 | 530 | 194 | 4 | 6 | 533 | 5 | 530 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0298780 | 0.805395 | 1.363119e-49 | -8.615850e-47 |
| Msa0027230 | Msa0298780 | 0.809881 | 1.519509e-50 | -8.615850e-47 |
| Msa0032090 | Msa0298780 | 0.824553 | 7.584178e-54 | -8.615850e-47 |
| Msa0032430 | Msa0298780 | 0.800518 | 1.388105e-48 | -8.615850e-47 |
| Msa0040690 | Msa0298780 | 0.801226 | 9.951198e-49 | -8.615850e-47 |
| Msa0052610 | Msa0298780 | 0.823040 | 1.715334e-53 | -8.615850e-47 |
| Msa0067870 | Msa0298780 | 0.814123 | 1.808590e-51 | -8.615850e-47 |
| Msa0074320 | Msa0298780 | 0.815493 | 8.986599e-52 | -8.615850e-47 |
| Msa0075220 | Msa0298780 | 0.801615 | 8.283282e-49 | -8.615850e-47 |
| Msa0079380 | Msa0298780 | 0.818179 | 2.243140e-52 | -8.615850e-47 |
| Msa0172070 | Msa0298780 | 0.801853 | 7.401129e-49 | -8.615850e-47 |
| Msa0187690 | Msa0298780 | 0.820264 | 7.519440e-53 | -8.615850e-47 |
| Msa0198350 | Msa0298780 | 0.849660 | 2.803611e-60 | -8.615850e-47 |
| Msa0255090 | Msa0298780 | 0.814353 | 1.608690e-51 | -8.615850e-47 |
| Msa0259380 | Msa0298780 | 0.811011 | 8.666919e-51 | -8.615850e-47 |
| Msa0292400 | Msa0298780 | 0.841187 | 5.531365e-58 | -8.615850e-47 |
| Msa0294160 | Msa0298780 | 0.818082 | 2.360050e-52 | -8.615850e-47 |
| Msa0298780 | Msa0300690 | 0.811790 | 5.871143e-51 | -8.615850e-47 |
| Msa0298780 | Msa0357990 | 0.805235 | 1.472222e-49 | -8.615850e-47 |
| Msa0298780 | Msa0422850 | 0.800524 | 1.384010e-48 | -8.615850e-47 |
| Msa0298780 | Msa0435420 | 0.805742 | 1.152393e-49 | -8.615850e-47 |
| Msa0298780 | Msa0526540 | 0.806873 | 6.659099e-50 | -8.615850e-47 |
| Msa0298780 | Msa0532070 | 0.814960 | 1.180406e-51 | -8.615850e-47 |
| Msa0298780 | Msa0576940 | 0.803117 | 4.062629e-49 | -8.615850e-47 |
| Msa0298780 | Msa0616240 | 0.804960 | 1.680704e-49 | -8.615850e-47 |
| Msa0298780 | Msa0677290 | 0.801387 | 9.222995e-49 | -8.615850e-47 |
| Msa0298780 | Msa0699570 | 0.802114 | 6.542154e-49 | -8.615850e-47 |
| Msa0298780 | Msa0738040 | 0.800019 | 1.753644e-48 | -8.615850e-47 |
| Msa0298780 | Msa0770720 | 0.806697 | 7.253075e-50 | -8.615850e-47 |
| Msa0298780 | Msa0822890 | 0.815867 | 7.417308e-52 | -8.615850e-47 |
| Msa0298780 | Msa0861510 | 0.809290 | 2.036178e-50 | -8.615850e-47 |
| Msa0298780 | Msa0861600 | 0.802987 | 4.322765e-49 | -8.615850e-47 |
| Msa0298780 | Msa0930780 | 0.802856 | 4.600722e-49 | -8.615850e-47 |
| Msa0298780 | Msa0980140 | 0.810924 | 9.050960e-51 | -8.615850e-47 |
| Msa0298780 | Msa1019240 | 0.806682 | 7.306879e-50 | -8.615850e-47 |
| Msa0298780 | Msa1043690 | 0.801034 | 1.088999e-48 | -8.615850e-47 |
| Msa0298780 | Msa1079230 | 0.829487 | 5.009436e-55 | -8.615850e-47 |
| Msa0298780 | Msa1104140 | 0.811501 | 6.783362e-51 | -8.615850e-47 |
| Msa0298780 | Msa1104210 | 0.808383 | 3.181373e-50 | -8.615850e-47 |
| Msa0298780 | Msa1106700 | 0.835810 | 1.351038e-56 | -8.615850e-47 |
| Msa0298780 | Msa1124110 | 0.842871 | 1.984040e-58 | -8.615850e-47 |
| Msa0298780 | Msa1143650 | 0.845120 | 4.951384e-59 | -8.615850e-47 |
| Msa0298780 | Msa1168950 | 0.842770 | 2.110924e-58 | -8.615850e-47 |
| Msa0298780 | Msa1169040 | 0.848494 | 5.913403e-60 | -8.615850e-47 |
| Msa0298780 | Msa1252190 | 0.823793 | 1.143688e-53 | -8.615850e-47 |
| Msa0298780 | Msa1254610 | 0.809716 | 1.649178e-50 | -8.615850e-47 |
| Msa0298780 | Msa1292830 | 0.819664 | 1.031489e-52 | -8.615850e-47 |
| Msa0298780 | Msa1363330 | 0.805109 | 1.564612e-49 | -8.615850e-47 |
| Msa0298780 | Msa1369150 | 0.822190 | 2.704385e-53 | -8.615850e-47 |
| Msa0298780 | Msa1374120 | 0.815908 | 7.264058e-52 | -8.615850e-47 |
| Msa0298780 | Msa1375560 | 0.803138 | 4.022127e-49 | -8.615850e-47 |
| Msa0298780 | Msa1386600 | 0.806001 | 1.016721e-49 | -8.615850e-47 |
| Msa0298780 | Msa1418090 | 0.800683 | 1.284920e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298780 | MtrunA17_Chr2g0291891 | 96.060 | 533 | 21 | 0 | 1 | 533 | 1 | 533 | 0.0 | 1048 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298780 | AT1G71440.1 | 62.264 | 530 | 194 | 4 | 6 | 533 | 5 | 530 | 0.0 | 644 |
Find 141 sgRNAs with CRISPR-Local
Find 469 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCATCATTGGCATTTA+TGG | 0.073081 | 2_3:-52991362 | Msa0298780:CDS |
| ATCGGTCAAACTTCTTATTT+TGG | 0.076304 | 2_3:-52985364 | Msa0298780:three_prime_UTR |
| TGAAATTCGGGTGTTGAATT+TGG | 0.154485 | 2_3:+52992273 | None:intergenic |
| ACGAGTTTCTATTCAATTAT+TGG | 0.155902 | 2_3:-52991431 | Msa0298780:CDS |
| TTGAATAGAAACTCGTTTAT+TGG | 0.162985 | 2_3:+52991438 | None:intergenic |
| ATAAAGGATATCAGGCTTTC+TGG | 0.164006 | 2_3:-52988011 | Msa0298780:intron |
| AAGAAATAAATTTAGCTTCA+TGG | 0.206298 | 2_3:+52985808 | None:intergenic |
| TTCTCTGCGACTGTTGAATT+TGG | 0.209412 | 2_3:-52989745 | Msa0298780:CDS |
| CGGATTGTGTGGAAAGTTAT+TGG | 0.219218 | 2_3:-52985192 | Msa0298780:three_prime_UTR |
| TTTAGTAGGTAATAAGATTT+TGG | 0.220178 | 2_3:-52985394 | Msa0298780:three_prime_UTR |
| GGGTGCTGTTTGATTTCTTC+AGG | 0.249727 | 2_3:+52986661 | None:intergenic |
| CGTCATCGCTTATGGACTTT+GGG | 0.251178 | 2_3:-52985544 | Msa0298780:CDS |
| CGAGTTTCTATTCAATTATT+GGG | 0.262405 | 2_3:-52991430 | Msa0298780:CDS |
| CCTTTCGCAGCATCAGTTAT+TGG | 0.277844 | 2_3:+52987984 | None:intergenic |
| CAATGACTCGTCATCGCTTA+TGG | 0.297595 | 2_3:-52985552 | Msa0298780:CDS |
| ATCCCATTACACAAATTCTT+AGG | 0.300079 | 2_3:+52992057 | None:intergenic |
| GAATTTGTGTAATGGGATTT+CGG | 0.316427 | 2_3:-52992052 | Msa0298780:CDS |
| TCGTTGGCCTACTTGAAATT+CGG | 0.317167 | 2_3:+52992260 | None:intergenic |
| GTCCTAAGAATTTGTGTAAT+GGG | 0.317362 | 2_3:-52992059 | Msa0298780:CDS |
| CACCCAAGTGTATTTCTATA+TGG | 0.321194 | 2_3:-52985285 | Msa0298780:three_prime_UTR |
| ACTGAAAAGCATCCGTGTTC+TGG | 0.327639 | 2_3:-52990391 | Msa0298780:CDS |
| CTTTCGCAGCATCAGTTATT+GGG | 0.328668 | 2_3:+52987985 | None:intergenic |
| ATATCTTTATAAAGGATATC+AGG | 0.331218 | 2_3:-52988019 | Msa0298780:intron |
| AATCATGGGTTGGAGTTGAT+TGG | 0.337078 | 2_3:-52992167 | Msa0298780:CDS |
| TGTGTCATCCTCTATGGTTC+GGG | 0.345070 | 2_3:-52989775 | Msa0298780:CDS |
| TCAGCCTGTGTCATCCTCTA+TGG | 0.345340 | 2_3:-52989781 | Msa0298780:intron |
| AATGCATCATTGGCATTTAT+GGG | 0.352973 | 2_3:-52991361 | Msa0298780:CDS |
| ATATGGTGACATTAAGTTGT+AGG | 0.353837 | 2_3:+52990431 | None:intergenic |
| CGTTGGCCTACTTGAAATTC+GGG | 0.354883 | 2_3:+52992261 | None:intergenic |
| ATTGTCTCGAATTGTACTTT+TGG | 0.355976 | 2_3:-52985257 | Msa0298780:three_prime_UTR |
| AAGAACCTTACCACCAAGTT+AGG | 0.365250 | 2_3:+52988792 | None:intergenic |
| GCTGGCAGCTTCTTTGTCAA+TGG | 0.366876 | 2_3:+52985980 | None:intergenic |
| AAAATACCGAACACCATTGA+TGG | 0.369907 | 2_3:+52992116 | None:intergenic |
| CTGTGTCATCCTCTATGGTT+CGG | 0.374447 | 2_3:-52989776 | Msa0298780:CDS |
| TAAATAATACCGGTGTAGAT+TGG | 0.378971 | 2_3:-52990365 | Msa0298780:CDS |
| AAGAATCTATTCTGTTTAGT+AGG | 0.383265 | 2_3:-52985408 | Msa0298780:three_prime_UTR |
| GAAGATCAACCGCCTTCAAT+TGG | 0.384335 | 2_3:-52986176 | Msa0298780:CDS |
| ATTAAATCTGTTTCCTAACT+TGG | 0.388407 | 2_3:-52988805 | Msa0298780:CDS |
| CCGCCTTCAATTGGAACAAC+TGG | 0.391385 | 2_3:-52986167 | Msa0298780:CDS |
| AATGGAAGCTCAGATTTATA+TGG | 0.396341 | 2_3:+52990414 | None:intergenic |
| GCAAAAGTTCAGATATTGAA+TGG | 0.398980 | 2_3:-52987927 | Msa0298780:CDS |
| TTTATGGGTGTTAGTTCCCC+TGG | 0.399620 | 2_3:-52991346 | Msa0298780:CDS |
| GGAGTTAACAAATGCATCAT+TGG | 0.404377 | 2_3:-52991371 | Msa0298780:CDS |
| CGAGCGATCAAAACAAATCT+TGG | 0.412406 | 2_3:+52987954 | None:intergenic |
| AAACAATATAAGCAGAATAC+TGG | 0.412478 | 2_3:-52990187 | Msa0298780:intron |
| AATTTCTATGCAGGTATGTT+CGG | 0.413171 | 2_3:-52986711 | Msa0298780:intron |
| GTTGGAGTTGATTGGGATCA+TGG | 0.419978 | 2_3:-52992159 | Msa0298780:CDS |
| CCACTCCGAAAGAAGATTCC+CGG | 0.423409 | 2_3:+52990821 | None:intergenic |
| AAATAATACCGGTGTAGATT+GGG | 0.426269 | 2_3:-52990364 | Msa0298780:CDS |
| TCGTCATCGCTTATGGACTT+TGG | 0.428261 | 2_3:-52985545 | Msa0298780:CDS |
| CCACCAGTTGTTCCAATTGA+AGG | 0.429636 | 2_3:+52986164 | None:intergenic |
| TTTGCAGTGTACGATGAAAC+TGG | 0.432526 | 2_3:+52992395 | None:intergenic |
| AAGTATGTTGGAAATGTAGA+AGG | 0.433321 | 2_3:-52992198 | Msa0298780:CDS |
| GTTAATAGATATACAAGAAC+TGG | 0.433987 | 2_3:-52990850 | Msa0298780:intron |
| AATTGAAGAGCTACATATCA+TGG | 0.434163 | 2_3:-52990211 | Msa0298780:CDS |
| ATCATGGGTTGGAGTTGATT+GGG | 0.441951 | 2_3:-52992166 | Msa0298780:CDS |
| TAGAAGGCTATTCAGAATCA+TGG | 0.447363 | 2_3:-52992182 | Msa0298780:CDS |
| TCTGTCCGGGAATCTTCTTT+CGG | 0.449309 | 2_3:-52990826 | Msa0298780:CDS |
| CGTCCTAAGAATTTGTGTAA+TGG | 0.452747 | 2_3:-52992060 | Msa0298780:CDS |
| TCGCTTATGGACTTTGGGGT+TGG | 0.471103 | 2_3:-52985539 | Msa0298780:CDS |
| TAATATTGTGAACCATCATC+AGG | 0.471674 | 2_3:+52989019 | None:intergenic |
| TGATAAGCTAAGTCGATTTG+AGG | 0.475126 | 2_3:-52991392 | Msa0298780:CDS |
| AAACTGGTCGGCGGCGTCGC+AGG | 0.482207 | 2_3:+52992411 | None:intergenic |
| GAAGTGTGTTGGAGCATCCA+TGG | 0.482760 | 2_3:-52986014 | Msa0298780:CDS |
| AAATCTGTTTCCTAACTTGG+TGG | 0.484903 | 2_3:-52988802 | Msa0298780:intron |
| ATACAAGAACTGGATCTGTC+CGG | 0.485004 | 2_3:-52990840 | Msa0298780:CDS |
| ATATTATGAATCAGAAGTTA+CGG | 0.485560 | 2_3:-52989002 | Msa0298780:CDS |
| AAAACTGCGCTGCCTTCTGT+TGG | 0.486046 | 2_3:-52988963 | Msa0298780:CDS |
| ATCAACAATCTTCGTCTACA+AGG | 0.486830 | 2_3:+52985501 | None:intergenic |
| GGCCAACGAGTACATGCATC+TGG | 0.490236 | 2_3:-52992246 | Msa0298780:CDS |
| AAAATATTATGATCAGCCTT+AGG | 0.498226 | 2_3:-52985468 | Msa0298780:three_prime_UTR |
| CAAAAGTTCAGATATTGAAT+GGG | 0.499360 | 2_3:-52987926 | Msa0298780:CDS |
| TGAAGCTTTCTCAGCTAAGA+TGG | 0.499779 | 2_3:-52989689 | Msa0298780:intron |
| TCTGGTGATTCAACGCGAAT+CGG | 0.504366 | 2_3:-52992228 | Msa0298780:CDS |
| ATCCTGAGCTAATTGCTTGT+GGG | 0.504945 | 2_3:+52986141 | None:intergenic |
| AAAGGAAGGACTCTGAGATT+AGG | 0.509373 | 2_3:-52987794 | Msa0298780:intron |
| AAACTGCGCTGCCTTCTGTT+GGG | 0.514438 | 2_3:-52988962 | Msa0298780:intron |
| TAACTGATGCTGCGAAAGGT+GGG | 0.519779 | 2_3:-52987980 | Msa0298780:CDS |
| ATGCAGGTATGTTCGGCTTG+TGG | 0.520315 | 2_3:-52986704 | Msa0298780:intron |
| GCTGTCACTCTGAAGTGTGT+TGG | 0.522962 | 2_3:-52986025 | Msa0298780:CDS |
| CATGGAGATGGCAAACATGA+TGG | 0.524688 | 2_3:-52992141 | Msa0298780:CDS |
| ATGGATCCATCAATGGTGTT+CGG | 0.528362 | 2_3:-52992122 | Msa0298780:CDS |
| AAACAAAGCAATGTGTTACT+AGG | 0.528805 | 2_3:-52992341 | Msa0298780:five_prime_UTR |
| AAATTTATTTCTTCAAGAAG+AGG | 0.530706 | 2_3:-52985798 | Msa0298780:intron |
| TACCGGTGTAGATTGGGAGC+AGG | 0.531608 | 2_3:-52990358 | Msa0298780:intron |
| TTCAACAAAACAAAAGATGC+AGG | 0.531945 | 2_3:-52992301 | Msa0298780:exon |
| GGCCCACAAGCAATTAGCTC+AGG | 0.532040 | 2_3:-52986143 | Msa0298780:CDS |
| TATAAGATTAATCGCACCTA+AGG | 0.535386 | 2_3:+52985452 | None:intergenic |
| TACAAGAACTGGATCTGTCC+GGG | 0.537233 | 2_3:-52990839 | Msa0298780:CDS |
| AAGAAATCAAACAGCACCCC+AGG | 0.538360 | 2_3:-52986657 | Msa0298780:intron |
| TGAACAGTTACCTGCTCTGA+AGG | 0.541292 | 2_3:-52990466 | Msa0298780:CDS |
| AAGTTGAGAGCCTTCAGAGC+AGG | 0.541486 | 2_3:+52990456 | None:intergenic |
| ATCGGCACAGTGAAGTATGT+TGG | 0.543408 | 2_3:-52992210 | Msa0298780:CDS |
| GAATCTTCTTTCGGAGTGGA+AGG | 0.544773 | 2_3:-52990817 | Msa0298780:intron |
| CTAATCTGACATGAAACTCC+AGG | 0.544804 | 2_3:+52991328 | None:intergenic |
| GTCATCGCTTATGGACTTTG+GGG | 0.546877 | 2_3:-52985543 | Msa0298780:CDS |
| GGCTATTCAGAATCATGGGT+TGG | 0.548023 | 2_3:-52992177 | Msa0298780:CDS |
| ATGTTCGGCTTGTGGTCTCA+AGG | 0.555466 | 2_3:-52986696 | Msa0298780:CDS |
| TTCAGATTACCTCACGTGAA+AGG | 0.558252 | 2_3:-52987812 | Msa0298780:intron |
| TATTATGAATCAGAAGTTAC+GGG | 0.558977 | 2_3:-52989001 | Msa0298780:CDS |
| AATCCTGAGCTAATTGCTTG+TGG | 0.563910 | 2_3:+52986140 | None:intergenic |
| CGAGTCATTGTCAAGCAGCA+AGG | 0.564288 | 2_3:+52985565 | None:intergenic |
| TGATTGTGTACATATGTACT+CGG | 0.565816 | 2_3:-52985212 | Msa0298780:three_prime_UTR |
| ATAACTGATGCTGCGAAAGG+TGG | 0.566024 | 2_3:-52987981 | Msa0298780:CDS |
| ATCAAAACCCCGAACCATAG+AGG | 0.568978 | 2_3:+52989767 | None:intergenic |
| ATGAATCAGAAGTTACGGGC+TGG | 0.570425 | 2_3:-52988997 | Msa0298780:CDS |
| AAGATAATTGTATAGCGGAA+TGG | 0.572628 | 2_3:-52989722 | Msa0298780:CDS |
| TACTTCTACTAAAGATGAAG+AGG | 0.573870 | 2_3:-52991998 | Msa0298780:CDS |
| CCGGGAATCTTCTTTCGGAG+TGG | 0.573959 | 2_3:-52990821 | Msa0298780:CDS |
| TCAACACCCGAATTTCAAGT+AGG | 0.576116 | 2_3:-52992267 | Msa0298780:CDS |
| TTTGGAAGATAATTGTATAG+CGG | 0.579436 | 2_3:-52989727 | Msa0298780:CDS |
| AGAAGGCTATTCAGAATCAT+GGG | 0.579644 | 2_3:-52992181 | Msa0298780:CDS |
| CACCAGATGCATGTACTCGT+TGG | 0.582714 | 2_3:+52992244 | None:intergenic |
| CCTTCAATTGGAACAACTGG+TGG | 0.583151 | 2_3:-52986164 | Msa0298780:CDS |
| TTGTCAAGCAGCAAGGGCAA+TGG | 0.583801 | 2_3:+52985572 | None:intergenic |
| ATTGAAGAGCTACATATCAT+GGG | 0.588972 | 2_3:-52990210 | Msa0298780:CDS |
| GAGTCATTGTCAAGCAGCAA+GGG | 0.589053 | 2_3:+52985566 | None:intergenic |
| CAAATTCTTAGGACGAACAA+AGG | 0.593672 | 2_3:+52992068 | None:intergenic |
| GATTACCTCACGTGAAAGGA+AGG | 0.594401 | 2_3:-52987808 | Msa0298780:CDS |
| AACTGATGCTGCGAAAGGTG+GGG | 0.597760 | 2_3:-52987979 | Msa0298780:CDS |
| CCAGTTGTTCCAATTGAAGG+CGG | 0.605303 | 2_3:+52986167 | None:intergenic |
| GCATTATCATACCCAACAGA+AGG | 0.607708 | 2_3:+52988951 | None:intergenic |
| TAATCTGACATGAAACTCCA+GGG | 0.611890 | 2_3:+52991329 | None:intergenic |
| AGAGTCCTTCCTTTCACGTG+AGG | 0.614807 | 2_3:+52987803 | None:intergenic |
| CCAATAACTGATGCTGCGAA+AGG | 0.615426 | 2_3:-52987984 | Msa0298780:CDS |
| ACTTCTACTAAAGATGAAGA+GGG | 0.616232 | 2_3:-52991997 | Msa0298780:intron |
| ATGCCATATAGAAATACACT+TGG | 0.617074 | 2_3:+52985282 | None:intergenic |
| AAACATGATGGATCCATCAA+TGG | 0.617155 | 2_3:-52992129 | Msa0298780:CDS |
| AAGTGTGTTGGAGCATCCAT+GGG | 0.624667 | 2_3:-52986013 | Msa0298780:CDS |
| GTGTCATCCTCTATGGTTCG+GGG | 0.625583 | 2_3:-52989774 | Msa0298780:CDS |
| TCAGATATTGAATGGGAGTG+AGG | 0.648807 | 2_3:-52987919 | Msa0298780:intron |
| GTTGATTGGGATCATGGAGA+TGG | 0.650431 | 2_3:-52992153 | Msa0298780:CDS |
| ACATATGTACTCGGATTGTG+TGG | 0.653603 | 2_3:-52985203 | Msa0298780:three_prime_UTR |
| TGCCATATAGAAATACACTT+GGG | 0.656749 | 2_3:+52985283 | None:intergenic |
| CAGTGTACGATGAAACTGGT+CGG | 0.673223 | 2_3:+52992399 | None:intergenic |
| AACCTGCTCCCAATCTACAC+CGG | 0.674871 | 2_3:+52990356 | None:intergenic |
| TATTATTTAAAACCAGAACA+CGG | 0.679803 | 2_3:+52990379 | None:intergenic |
| CAGATTTAATGAGTCAACAG+AGG | 0.691853 | 2_3:+52988818 | None:intergenic |
| AATCTGACATGAAACTCCAG+GGG | 0.704444 | 2_3:+52991330 | None:intergenic |
| CGAACCATAGAGGATGACAC+AGG | 0.721446 | 2_3:+52989777 | None:intergenic |
| TGTACGATGAAACTGGTCGG+CGG | 0.738192 | 2_3:+52992402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAATAAAAAAAAAT+GGG | + | chr2_3:52986342-52986361 | None:intergenic | 0.0% |
| !! | CTAATTATATATCTTTATAA+AGG | - | chr2_3:52989581-52989600 | Msa0298780:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTACCAA+TGG | + | chr2_3:52986895-52986914 | None:intergenic | 15.0% |
| !!! | TTTTTTCCTCTTAAATTTTA+TGG | - | chr2_3:52987638-52987657 | Msa0298780:intron | 15.0% |
| !! | AAAAAATAGAAATAATATCC+AGG | - | chr2_3:52989117-52989136 | Msa0298780:intron | 15.0% |
| !!! | AAGTGTTTTAAACTTTTTTT+GGG | + | chr2_3:52989245-52989264 | None:intergenic | 15.0% |
| !!! | AAAGTGTTTTAAACTTTTTT+TGG | + | chr2_3:52989246-52989265 | None:intergenic | 15.0% |
| !! | TTTATTTATAATTTCTATGC+AGG | - | chr2_3:52990888-52990907 | Msa0298780:intron | 15.0% |
| !! | TTGTATATCTATTAACAGAA+AGG | + | chr2_3:52986754-52986773 | None:intergenic | 20.0% |
| !! | GGTAAAAAAAAAAAAACACT+TGG | - | chr2_3:52986897-52986916 | Msa0298780:intron | 20.0% |
| !! | TGCAAAAAGATATATGAAAA+TGG | + | chr2_3:52987104-52987123 | None:intergenic | 20.0% |
| !!! | ATTTTCATATATCTTTTTGC+AGG | - | chr2_3:52987103-52987122 | Msa0298780:intron | 20.0% |
| !!! | TATTATTTAAAACCAGAACA+CGG | + | chr2_3:52987232-52987251 | None:intergenic | 20.0% |
| !!! | TGTTAAAAAAGAAACTTTTG+AGG | + | chr2_3:52987571-52987590 | None:intergenic | 20.0% |
| !!! | AAAAGTTTCTTTTTTAACAG+AGG | - | chr2_3:52987572-52987591 | Msa0298780:intron | 20.0% |
| !!! | AAAGTTTCTTTTTTAACAGA+GGG | - | chr2_3:52987573-52987592 | Msa0298780:intron | 20.0% |
| !! | TAAAAAATGTATCCAATTAC+AGG | - | chr2_3:52987599-52987618 | Msa0298780:intron | 20.0% |
| !!! | TGTTTTCACATTAACAATAT+AGG | - | chr2_3:52987685-52987704 | Msa0298780:intron | 20.0% |
| !! | AATATGATAGGTTTGTATAT+AGG | - | chr2_3:52987717-52987736 | Msa0298780:intron | 20.0% |
| !! | TGTATAATTAAAGTGAAATG+TGG | - | chr2_3:52988359-52988378 | Msa0298780:intron | 20.0% |
| !!! | TATTATGTTTTGTTTCAGTT+TGG | - | chr2_3:52988522-52988541 | Msa0298780:intron | 20.0% |
| !! | ATATTATGAATCAGAAGTTA+CGG | - | chr2_3:52988606-52988625 | Msa0298780:intron | 20.0% |
| !! | TGATAATTGAAAGACTTAAA+AGG | + | chr2_3:52988741-52988760 | None:intergenic | 20.0% |
| !!! | TTAAACTTTTTTTGGGATTA+TGG | + | chr2_3:52989238-52989257 | None:intergenic | 20.0% |
| !!! | TTCCTCTGAATTAAATATTT+TGG | - | chr2_3:52989432-52989451 | Msa0298780:intron | 20.0% |
| !! | AACCAAAATATTTAATTCAG+AGG | + | chr2_3:52989437-52989456 | None:intergenic | 20.0% |
| !! | ATATCTTTATAAAGGATATC+AGG | - | chr2_3:52989589-52989608 | Msa0298780:intron | 20.0% |
| !!! | TTGGTTAAAGAGTATATAAA+AGG | + | chr2_3:52989748-52989767 | None:intergenic | 20.0% |
| !! | CAAAAATCCATTATAGTTAA+GGG | + | chr2_3:52989958-52989977 | None:intergenic | 20.0% |
| !! | ACAAAAATCCATTATAGTTA+AGG | + | chr2_3:52989959-52989978 | None:intergenic | 20.0% |
| !!! | AATTAATTTTGCTGAATTAC+AGG | + | chr2_3:52990086-52990105 | None:intergenic | 20.0% |
| !! | GATATTTGATTGAAAGTAAA+TGG | + | chr2_3:52990291-52990310 | None:intergenic | 20.0% |
| !! | ATTCTGTATTTATATTGTCT+GGG | + | chr2_3:52990478-52990497 | None:intergenic | 20.0% |
| !! | TATTCTGTATTTATATTGTC+TGG | + | chr2_3:52990479-52990498 | None:intergenic | 20.0% |
| !! | AAGAAATTCCTTTAATATCA+AGG | - | chr2_3:52990698-52990717 | Msa0298780:intron | 20.0% |
| !!! | TAGTATAGTTAGTATTTTGT+TGG | - | chr2_3:52991145-52991164 | Msa0298780:intron | 20.0% |
| !! | TCACATATCATATAATAAAG+AGG | - | chr2_3:52991343-52991362 | Msa0298780:CDS | 20.0% |
| !!! | AAAGTATTGATATTTTACTG+TGG | + | chr2_3:52991659-52991678 | None:intergenic | 20.0% |
| !! | AGAGAAACATAGTAATAAAA+AGG | + | chr2_3:52991731-52991750 | None:intergenic | 20.0% |
| !!! | AAGAAATAAATTTAGCTTCA+TGG | + | chr2_3:52991803-52991822 | None:intergenic | 20.0% |
| !!! | AAATTTATTTCTTCAAGAAG+AGG | - | chr2_3:52991810-52991829 | Msa0298780:intron | 20.0% |
| !!! | TTTAGTAGGTAATAAGATTT+TGG | - | chr2_3:52992214-52992233 | Msa0298780:CDS | 20.0% |
| ! | ACACATTTGACAAAAAATAG+TGG | - | chr2_3:52985681-52985700 | Msa0298780:intron | 25.0% |
| ! | GGTAAAATTAGTAGTTGAAT+TGG | - | chr2_3:52985791-52985810 | Msa0298780:intron | 25.0% |
| ! | TAAGCTATAAGCTCAAAATT+TGG | - | chr2_3:52985938-52985957 | Msa0298780:intron | 25.0% |
| ! | GTGATATAGTATAACTAAGA+TGG | + | chr2_3:52986039-52986058 | None:intergenic | 25.0% |
| ! | TTGAATAGAAACTCGTTTAT+TGG | + | chr2_3:52986173-52986192 | None:intergenic | 25.0% |
| ! | ACGAGTTTCTATTCAATTAT+TGG | - | chr2_3:52986177-52986196 | Msa0298780:CDS | 25.0% |
| ! | CGAGTTTCTATTCAATTATT+GGG | - | chr2_3:52986178-52986197 | Msa0298780:CDS | 25.0% |
| !!! | AAAAAAAAATGGGAGTGTTA+TGG | + | chr2_3:52986332-52986351 | None:intergenic | 25.0% |
| ! | TTGTTGTAATATCACTGAAT+TGG | - | chr2_3:52986429-52986448 | Msa0298780:intron | 25.0% |
| !! | TTTTACCTTGCTTAAGATAA+TGG | - | chr2_3:52986456-52986475 | Msa0298780:intron | 25.0% |
| ! | TAAAACCATTATCTTAAGCA+AGG | + | chr2_3:52986464-52986483 | None:intergenic | 25.0% |
| ! | TTTAAATAGCAGTAACAGTT+TGG | - | chr2_3:52986480-52986499 | Msa0298780:intron | 25.0% |
| ! | TTAACCAGAGTTTCAAATAA+AGG | + | chr2_3:52986635-52986654 | None:intergenic | 25.0% |
| !! | CTTTTACTTGAAGTTACAAT+AGG | - | chr2_3:52986659-52986678 | Msa0298780:CDS | 25.0% |
| !! | ATCCTCTAAGAAAATATGAA+TGG | - | chr2_3:52986702-52986721 | Msa0298780:intron | 25.0% |
| !! | TTCCATTCATATTTTCTTAG+AGG | + | chr2_3:52986707-52986726 | None:intergenic | 25.0% |
| ! | GTTAATAGATATACAAGAAC+TGG | - | chr2_3:52986758-52986777 | Msa0298780:intron | 25.0% |
| !! | GAATAGAAAAAGGTTTTTAC+AGG | + | chr2_3:52986981-52987000 | None:intergenic | 25.0% |
| !!! | GCTATTTTTGGAATAGAAAA+AGG | + | chr2_3:52986991-52987010 | None:intergenic | 25.0% |
| !!! | GTTCTGGTTTTAAATAATAC+CGG | - | chr2_3:52987233-52987252 | Msa0298780:intron | 25.0% |
| !! | TATTTCCTTCAGGTTTAATT+AGG | - | chr2_3:52987313-52987332 | Msa0298780:intron | 25.0% |
| ! | TAAATATTGCCTTTGTAACT+GGG | - | chr2_3:52987342-52987361 | Msa0298780:intron | 25.0% |
| ! | AAACAATATAAGCAGAATAC+TGG | - | chr2_3:52987421-52987440 | Msa0298780:intron | 25.0% |
| ! | AGAATACTGGTATGTTATAT+AGG | - | chr2_3:52987434-52987453 | Msa0298780:intron | 25.0% |
| !!! | AAGTTTCTTTTTTAACAGAG+GGG | - | chr2_3:52987574-52987593 | Msa0298780:intron | 25.0% |
| ! | GAGGAAAAAAACATCTTTAT+TGG | + | chr2_3:52987628-52987647 | None:intergenic | 25.0% |
| ! | CATCTACCATAAAATTTAAG+AGG | + | chr2_3:52987647-52987666 | None:intergenic | 25.0% |
| ! | AGGAACTTAGTTAATATGAT+AGG | - | chr2_3:52987705-52987724 | Msa0298780:intron | 25.0% |
| ! | TTTGGAAGATAATTGTATAG+CGG | - | chr2_3:52987881-52987900 | Msa0298780:intron | 25.0% |
| ! | ATGAAAAATAGACAAACCTT+AGG | + | chr2_3:52988046-52988065 | None:intergenic | 25.0% |
| ! | TATTATGAATCAGAAGTTAC+GGG | - | chr2_3:52988607-52988626 | Msa0298780:intron | 25.0% |
| ! | AAGTCTTTCAATTATCATAC+AGG | - | chr2_3:52988744-52988763 | Msa0298780:intron | 25.0% |
| ! | ATTAAATCTGTTTCCTAACT+TGG | - | chr2_3:52988803-52988822 | Msa0298780:CDS | 25.0% |
| !!! | CAATAATGGATTTTTCAAAG+AGG | + | chr2_3:52989211-52989230 | None:intergenic | 25.0% |
| ! | ACAGATCATTACTGTTTAAA+AGG | + | chr2_3:52989383-52989402 | None:intergenic | 25.0% |
| ! | AGAATGTAGTGATACATATA+GGG | + | chr2_3:52989474-52989493 | None:intergenic | 25.0% |
| ! | AAGAATGTAGTGATACATAT+AGG | + | chr2_3:52989475-52989494 | None:intergenic | 25.0% |
| ! | GGATAGAATAAGATAAAGAA+AGG | + | chr2_3:52989499-52989518 | None:intergenic | 25.0% |
| ! | AAAATAGTGAAGAAAAACAG+AGG | + | chr2_3:52989520-52989539 | None:intergenic | 25.0% |
| ! | CAAAAGTTCAGATATTGAAT+GGG | - | chr2_3:52989682-52989701 | Msa0298780:intron | 25.0% |
| ! | ATTATGTGTATTGTTTGTCA+AGG | - | chr2_3:52989905-52989924 | Msa0298780:intron | 25.0% |
| ! | TTATGTGTATTGTTTGTCAA+GGG | - | chr2_3:52989906-52989925 | Msa0298780:intron | 25.0% |
| ! | ACTAAATGATCAGAAAAAAC+AGG | + | chr2_3:52989988-52990007 | None:intergenic | 25.0% |
| !!! | TTTTTCTGATCATTTAGTTC+TGG | - | chr2_3:52989990-52990009 | Msa0298780:intron | 25.0% |
| !! | TAGAAGAAGAAAGGTTTTTA+GGG | - | chr2_3:52990315-52990334 | Msa0298780:intron | 25.0% |
| ! | ATCTTTGACACTATTATTGA+GGG | - | chr2_3:52990340-52990359 | Msa0298780:intron | 25.0% |
| ! | ATAGCAATCCTTGATATTAA+AGG | + | chr2_3:52990709-52990728 | None:intergenic | 25.0% |
| ! | TACTGTTATGAATACATTTG+TGG | - | chr2_3:52990760-52990779 | Msa0298780:intron | 25.0% |
| ! | TTATGAATACATTTGTGGTT+TGG | - | chr2_3:52990765-52990784 | Msa0298780:intron | 25.0% |
| ! | ATTAACGGTTTACATCTTAT+TGG | - | chr2_3:52990834-52990853 | Msa0298780:CDS | 25.0% |
| !! | ACTAACATTTGTCATTTAAG+AGG | + | chr2_3:52991129-52991148 | None:intergenic | 25.0% |
| !! | TATAGTTAGTATTTTGTTGG+AGG | - | chr2_3:52991148-52991167 | Msa0298780:intron | 25.0% |
| ! | AATCACTCTTATACAATCAA+GGG | + | chr2_3:52991251-52991270 | None:intergenic | 25.0% |
| !!! | TGCAATTTTGTTTAAGATGT+CGG | - | chr2_3:52991280-52991299 | Msa0298780:intron | 25.0% |
| ! | TTCGTAAAAATTCTTAAGCT+CGG | + | chr2_3:52991409-52991428 | None:intergenic | 25.0% |
| ! | AGTCTCAATATTATATTGCA+AGG | + | chr2_3:52991682-52991701 | None:intergenic | 25.0% |
| ! | TTTATTACTATGTTTCTCTC+AGG | - | chr2_3:52991732-52991751 | Msa0298780:intron | 25.0% |
| !!! | GAATTTGTTTTATTCAACCA+AGG | + | chr2_3:52991950-52991969 | None:intergenic | 25.0% |
| ! | GATTGAAATTAGTTGTTACA+TGG | - | chr2_3:52991993-52992012 | Msa0298780:intron | 25.0% |
| !! | TTACATGGATTTGAATTTTC+AGG | - | chr2_3:52992008-52992027 | Msa0298780:CDS | 25.0% |
| !! | TACATGGATTTGAATTTTCA+GGG | - | chr2_3:52992009-52992028 | Msa0298780:CDS | 25.0% |
| ! | AAAATATTATGATCAGCCTT+AGG | - | chr2_3:52992140-52992159 | Msa0298780:CDS | 25.0% |
| ! | AAGAATCTATTCTGTTTAGT+AGG | - | chr2_3:52992200-52992219 | Msa0298780:CDS | 25.0% |
| !!! | TAAGATTTTGGTAAATGCAT+CGG | - | chr2_3:52992226-52992245 | Msa0298780:CDS | 25.0% |
| !!! | ATTTTGATGCACTATTTGAT+GGG | - | chr2_3:52992268-52992287 | Msa0298780:CDS | 25.0% |
| ! | AAACAAAGCAATGTGTTACT+AGG | - | chr2_3:52985267-52985286 | Msa0298780:three_prime_UTR | 30.0% |
| TTCAACAAAACAAAAGATGC+AGG | - | chr2_3:52985307-52985326 | Msa0298780:three_prime_UTR | 30.0% | |
| AAGTATGTTGGAAATGTAGA+AGG | - | chr2_3:52985410-52985429 | Msa0298780:three_prime_UTR | 30.0% | |
| GTCCTAAGAATTTGTGTAAT+GGG | - | chr2_3:52985549-52985568 | Msa0298780:CDS | 30.0% | |
| ATCCCATTACACAAATTCTT+AGG | + | chr2_3:52985554-52985573 | None:intergenic | 30.0% | |
| ! | GAATTTGTGTAATGGGATTT+CGG | - | chr2_3:52985556-52985575 | Msa0298780:CDS | 30.0% |
| TACTTCTACTAAAGATGAAG+AGG | - | chr2_3:52985610-52985629 | Msa0298780:intron | 30.0% | |
| ACTTCTACTAAAGATGAAGA+GGG | - | chr2_3:52985611-52985630 | Msa0298780:intron | 30.0% | |
| ! | GTTGATAAGCTAGTTTATAG+TGG | - | chr2_3:52985707-52985726 | Msa0298780:intron | 30.0% |
| ! | GCTGATTAAGTTGTATTGTT+TGG | - | chr2_3:52985770-52985789 | Msa0298780:intron | 30.0% |
| ! | CAGACACATTTTATATGTTG+GGG | + | chr2_3:52986006-52986025 | None:intergenic | 30.0% |
| ! | GCAGACACATTTTATATGTT+GGG | + | chr2_3:52986007-52986026 | None:intergenic | 30.0% |
| ! | TGCAGACACATTTTATATGT+TGG | + | chr2_3:52986008-52986027 | None:intergenic | 30.0% |
| !! | TTATATGTATTTTGGGTGCT+TGG | - | chr2_3:52986089-52986108 | Msa0298780:intron | 30.0% |
| AAATGCATCATTGGCATTTA+TGG | - | chr2_3:52986246-52986265 | Msa0298780:intron | 30.0% | |
| AATGCATCATTGGCATTTAT+GGG | - | chr2_3:52986247-52986266 | Msa0298780:intron | 30.0% | |
| TGAAACATCAATCAAACTAG+TGG | - | chr2_3:52986368-52986387 | Msa0298780:intron | 30.0% | |
| ! | CAAACCTTTATTTGAAACTC+TGG | - | chr2_3:52986628-52986647 | Msa0298780:intron | 30.0% |
| ! | AAAGGTACAGTTTCAAAACA+TGG | + | chr2_3:52986736-52986755 | None:intergenic | 30.0% |
| ! | AACACTTGGATCACATATTT+TGG | - | chr2_3:52986911-52986930 | Msa0298780:intron | 30.0% |
| TCTATTCCAAAAATAGCACT+AGG | - | chr2_3:52986994-52987013 | Msa0298780:intron | 30.0% | |
| !! | TCGCTTTTATTTACTTTGCA+TGG | - | chr2_3:52987031-52987050 | Msa0298780:intron | 30.0% |
| ! | TATATCTTTTTGCAGGATGT+TGG | - | chr2_3:52987110-52987129 | Msa0298780:intron | 30.0% |
| ! | ATATGGTGACATTAAGTTGT+AGG | + | chr2_3:52987180-52987199 | None:intergenic | 30.0% |
| AATGGAAGCTCAGATTTATA+TGG | + | chr2_3:52987197-52987216 | None:intergenic | 30.0% | |
| TAAATAATACCGGTGTAGAT+TGG | - | chr2_3:52987243-52987262 | Msa0298780:intron | 30.0% | |
| AAATAATACCGGTGTAGATT+GGG | - | chr2_3:52987244-52987263 | Msa0298780:intron | 30.0% | |
| AAGTTGAGAAAAGAGAAAGA+AGG | + | chr2_3:52987279-52987298 | None:intergenic | 30.0% | |
| CTAAATATTGCCTTTGTAAC+TGG | - | chr2_3:52987341-52987360 | Msa0298780:intron | 30.0% | |
| AATTGAAGAGCTACATATCA+TGG | - | chr2_3:52987397-52987416 | Msa0298780:intron | 30.0% | |
| ATTGAAGAGCTACATATCAT+GGG | - | chr2_3:52987398-52987417 | Msa0298780:intron | 30.0% | |
| AACATGCTTGTTCAATATGT+TGG | - | chr2_3:52987463-52987482 | Msa0298780:intron | 30.0% | |
| !! | AAAAGAAACTTTTGAGGACA+AGG | + | chr2_3:52987565-52987584 | None:intergenic | 30.0% |
| GAACAGAAAAAGGAAAAAGA+TGG | + | chr2_3:52987809-52987828 | None:intergenic | 30.0% | |
| ! | AAGATAATTGTATAGCGGAA+TGG | - | chr2_3:52987886-52987905 | Msa0298780:intron | 30.0% |
| !!! | ATTTTAACTTTGTACTCCCT+TGG | - | chr2_3:52988004-52988023 | Msa0298780:CDS | 30.0% |
| !!! | TTTTAACTTTGTACTCCCTT+GGG | - | chr2_3:52988005-52988024 | Msa0298780:CDS | 30.0% |
| AAAAATAGACAAACCTTAGG+TGG | + | chr2_3:52988043-52988062 | None:intergenic | 30.0% | |
| AAATGTCAATGATACGTGAA+GGG | - | chr2_3:52988094-52988113 | Msa0298780:intron | 30.0% | |
| ! | AAATTTAGGTTCAATCCACA+TGG | + | chr2_3:52988234-52988253 | None:intergenic | 30.0% |
| AAGTAACGAGCAGAAAATTT+AGG | + | chr2_3:52988248-52988267 | None:intergenic | 30.0% | |
| AGTTGAACACTTGCAATAAA+TGG | + | chr2_3:52988321-52988340 | None:intergenic | 30.0% | |
| TCTAAACCAAATCTAACCAA+CGG | + | chr2_3:52988473-52988492 | None:intergenic | 30.0% | |
| TAATATTGTGAACCATCATC+AGG | + | chr2_3:52988592-52988611 | None:intergenic | 30.0% | |
| AGTATGATGATCTTATCAAG+AGG | + | chr2_3:52988686-52988705 | None:intergenic | 30.0% | |
| AATTCATGATTATGCATGCA+TGG | - | chr2_3:52988880-52988899 | Msa0298780:intron | 30.0% | |
| TAGAGAATACTGAACTACAA+CGG | - | chr2_3:52989066-52989085 | Msa0298780:CDS | 30.0% | |
| TCAGATAGATTAGAAAGCTA+TGG | + | chr2_3:52989172-52989191 | None:intergenic | 30.0% | |
| ! | TTAAAACACTTTGTCACTTG+CGG | - | chr2_3:52989254-52989273 | Msa0298780:intron | 30.0% |
| !! | TTTCTAGAGCATCTTACTTA+TGG | - | chr2_3:52989543-52989562 | Msa0298780:intron | 30.0% |
| GCAAAAGTTCAGATATTGAA+TGG | - | chr2_3:52989681-52989700 | Msa0298780:intron | 30.0% | |
| AGACGTAAATGCATTACATT+TGG | + | chr2_3:52989767-52989786 | None:intergenic | 30.0% | |
| GGCACTACTAAAAAACTATA+AGG | + | chr2_3:52989937-52989956 | None:intergenic | 30.0% | |
| AACTACATACATTTCCTCAT+TGG | - | chr2_3:52990040-52990059 | Msa0298780:intron | 30.0% | |
| ! | AATTTTGCTGAATTACAGGA+TGG | + | chr2_3:52990082-52990101 | None:intergenic | 30.0% |
| ATATCCTTGTAGAAGAAGAA+AGG | - | chr2_3:52990306-52990325 | Msa0298780:intron | 30.0% | |
| AAAACCTTTCTTCTTCTACA+AGG | + | chr2_3:52990313-52990332 | None:intergenic | 30.0% | |
| ! | GTAGAAGAAGAAAGGTTTTT+AGG | - | chr2_3:52990314-52990333 | Msa0298780:intron | 30.0% |
| CATCTTTGACACTATTATTG+AGG | - | chr2_3:52990339-52990358 | Msa0298780:intron | 30.0% | |
| CAATCAAATGCAAGAGAATA+AGG | - | chr2_3:52990501-52990520 | Msa0298780:intron | 30.0% | |
| AAGCTACAACTTGAGTTTAA+GGG | + | chr2_3:52990568-52990587 | None:intergenic | 30.0% | |
| ! | TCAAAGCTTTTATAGATAGC+TGG | + | chr2_3:52990624-52990643 | None:intergenic | 30.0% |
| !! | GTATTGGCTCATTCAATTAA+CGG | - | chr2_3:52990819-52990838 | Msa0298780:CDS | 30.0% |
| AATTTCTATGCAGGTATGTT+CGG | - | chr2_3:52990897-52990916 | Msa0298780:intron | 30.0% | |
| ATCACTCTTATACAATCAAG+GGG | + | chr2_3:52991250-52991269 | None:intergenic | 30.0% | |
| CAATCACTCTTATACAATCA+AGG | + | chr2_3:52991252-52991271 | None:intergenic | 30.0% | |
| GATTGTATAAGAGTGATTGA+AGG | - | chr2_3:52991253-52991272 | Msa0298780:intron | 30.0% | |
| !! | GCAATTTTGTTTAAGATGTC+GGG | - | chr2_3:52991281-52991300 | Msa0298780:intron | 30.0% |
| TGATTGGAAATTCAATCAGT+AGG | - | chr2_3:52991319-52991338 | Msa0298780:CDS | 30.0% | |
| TGCAATAAAGTGTGAAATCT+AGG | + | chr2_3:52991380-52991399 | None:intergenic | 30.0% | |
| TAGATTTCACACTTTATTGC+AGG | - | chr2_3:52991379-52991398 | Msa0298780:CDS | 30.0% | |
| !! | AAATCATTTTTGATCTGCCT+TGG | - | chr2_3:52991930-52991949 | Msa0298780:intron | 30.0% |
| TATAAGATTAATCGCACCTA+AGG | + | chr2_3:52992159-52992178 | None:intergenic | 30.0% | |
| !! | ATCGGTCAAACTTCTTATTT+TGG | - | chr2_3:52992244-52992263 | Msa0298780:CDS | 30.0% |
| !!! | TCGGTCAAACTTCTTATTTT+GGG | - | chr2_3:52992245-52992264 | Msa0298780:CDS | 30.0% |
| !! | GATTTTGATGCACTATTTGA+TGG | - | chr2_3:52992267-52992286 | Msa0298780:CDS | 30.0% |
| TGCCATATAGAAATACACTT+GGG | + | chr2_3:52992328-52992347 | None:intergenic | 30.0% | |
| ATGCCATATAGAAATACACT+TGG | + | chr2_3:52992329-52992348 | None:intergenic | 30.0% | |
| ! | ATTGTCTCGAATTGTACTTT+TGG | - | chr2_3:52992351-52992370 | Msa0298780:five_prime_UTR | 30.0% |
| TGATTGTGTACATATGTACT+CGG | - | chr2_3:52992396-52992415 | Msa0298780:five_prime_UTR | 30.0% | |
| !! | TGAAATTCGGGTGTTGAATT+TGG | + | chr2_3:52985338-52985357 | None:intergenic | 35.0% |
| TAGAAGGCTATTCAGAATCA+TGG | - | chr2_3:52985426-52985445 | Msa0298780:three_prime_UTR | 35.0% | |
| AGAAGGCTATTCAGAATCAT+GGG | - | chr2_3:52985427-52985446 | Msa0298780:three_prime_UTR | 35.0% | |
| !! | AAACATGATGGATCCATCAA+TGG | - | chr2_3:52985479-52985498 | Msa0298780:three_prime_UTR | 35.0% |
| AAAATACCGAACACCATTGA+TGG | + | chr2_3:52985495-52985514 | None:intergenic | 35.0% | |
| CAAATTCTTAGGACGAACAA+AGG | + | chr2_3:52985543-52985562 | None:intergenic | 35.0% | |
| CGTCCTAAGAATTTGTGTAA+TGG | - | chr2_3:52985548-52985567 | Msa0298780:CDS | 35.0% | |
| !! | TGATAAGCTAAGTCGATTTG+AGG | - | chr2_3:52986216-52986235 | Msa0298780:intron | 35.0% |
| GGAGTTAACAAATGCATCAT+TGG | - | chr2_3:52986237-52986256 | Msa0298780:intron | 35.0% | |
| TAATCTGACATGAAACTCCA+GGG | + | chr2_3:52986282-52986301 | None:intergenic | 35.0% | |
| GTTATGGAGTTAAGCTTACT+CGG | + | chr2_3:52986316-52986335 | None:intergenic | 35.0% | |
| ATCAATCAAACTAGTGGCAT+CGG | - | chr2_3:52986374-52986393 | Msa0298780:intron | 35.0% | |
| !!! | TGGCATCGGTTTTTGTTTTT+GGG | - | chr2_3:52986388-52986407 | Msa0298780:intron | 35.0% |
| ! | CTTGATTTTGTGAAGAATCG+TGG | - | chr2_3:52986517-52986536 | Msa0298780:intron | 35.0% |
| !! | GCTTATTTTCTTCACACCAT+TGG | - | chr2_3:52986876-52986895 | Msa0298780:intron | 35.0% |
| !! | ACTTGGATCACATATTTTGG+AGG | - | chr2_3:52986914-52986933 | Msa0298780:intron | 35.0% |
| AGATAAAAGACAATGTCGAC+AGG | + | chr2_3:52986958-52986977 | None:intergenic | 35.0% | |
| !!! | AGTGATCCTAGTGCTATTTT+TGG | + | chr2_3:52987003-52987022 | None:intergenic | 35.0% |
| CCAATCGCTAAAAAGATAGT+GGG | + | chr2_3:52987057-52987076 | None:intergenic | 35.0% | |
| ACCAATCGCTAAAAAGATAG+TGG | + | chr2_3:52987058-52987077 | None:intergenic | 35.0% | |
| CTCTTGCTTATATTTCCTTC+AGG | - | chr2_3:52987303-52987322 | Msa0298780:intron | 35.0% | |
| CAACTCCTAATTAAACCTGA+AGG | + | chr2_3:52987321-52987340 | None:intergenic | 35.0% | |
| AACAATGCTACTCTGTACTT+AGG | + | chr2_3:52987504-52987523 | None:intergenic | 35.0% | |
| !! | CTTTATTGGCTTCCTGTAAT+TGG | + | chr2_3:52987614-52987633 | None:intergenic | 35.0% |
| CAAATGTCAATGATACGTGA+AGG | - | chr2_3:52988093-52988112 | Msa0298780:intron | 35.0% | |
| AATGTCAATGATACGTGAAG+GGG | - | chr2_3:52988095-52988114 | Msa0298780:intron | 35.0% | |
| TAATCAAATCTGCTTCCATG+TGG | - | chr2_3:52988216-52988235 | Msa0298780:intron | 35.0% | |
| TGGATGACTAAAATGTGAAG+TGG | + | chr2_3:52988281-52988300 | None:intergenic | 35.0% | |
| ! | TCTCTCTTTTATCCTGATGA+TGG | - | chr2_3:52988577-52988596 | Msa0298780:intron | 35.0% |
| CAGATTTAATGAGTCAACAG+AGG | + | chr2_3:52988793-52988812 | None:intergenic | 35.0% | |
| AAATCTGTTTCCTAACTTGG+TGG | - | chr2_3:52988806-52988825 | Msa0298780:CDS | 35.0% | |
| AAACTGCATGCTGAAATATC+AGG | + | chr2_3:52988964-52988983 | None:intergenic | 35.0% | |
| AATCAATCGCTAAACCAGAA+GGG | + | chr2_3:52988988-52989007 | None:intergenic | 35.0% | |
| AAATCAATCGCTAAACCAGA+AGG | + | chr2_3:52988989-52989008 | None:intergenic | 35.0% | |
| ATACTGAACTACAACGGAAA+TGG | - | chr2_3:52989072-52989091 | Msa0298780:intron | 35.0% | |
| TATGTCTTCTTATCGAATCC+TGG | + | chr2_3:52989138-52989157 | None:intergenic | 35.0% | |
| TGCTAAGTAGAGTGCAATTA+AGG | + | chr2_3:52989297-52989316 | None:intergenic | 35.0% | |
| ! | TTTTGTCCTACATATGCCTT+AGG | - | chr2_3:52989338-52989357 | Msa0298780:intron | 35.0% |
| ATAAAGGATATCAGGCTTTC+TGG | - | chr2_3:52989597-52989616 | Msa0298780:intron | 35.0% | |
| AGGTGCAAATAAGCAATAGA+GGG | + | chr2_3:52989728-52989747 | None:intergenic | 35.0% | |
| AAGGTGCAAATAAGCAATAG+AGG | + | chr2_3:52989729-52989748 | None:intergenic | 35.0% | |
| AGTAGTGCCCTTAACTATAA+TGG | - | chr2_3:52989948-52989967 | Msa0298780:intron | 35.0% | |
| !! | ATCATTTAGTTCTGGACTTG+TGG | - | chr2_3:52989998-52990017 | Msa0298780:intron | 35.0% |
| !!! | TCTTTTAGAATTGCAGCACA+AGG | - | chr2_3:52990139-52990158 | Msa0298780:intron | 35.0% |
| ACATATGACCAACAATGACA+AGG | + | chr2_3:52990206-52990225 | None:intergenic | 35.0% | |
| GGTCATATGTTGTATACCAT+TGG | - | chr2_3:52990216-52990235 | Msa0298780:CDS | 35.0% | |
| TTGAAAGTAAATGGCCAGAA+GGG | + | chr2_3:52990282-52990301 | None:intergenic | 35.0% | |
| ATTGAAAGTAAATGGCCAGA+AGG | + | chr2_3:52990283-52990302 | None:intergenic | 35.0% | |
| ! | ATGAGAGAAATTCTCTGGAA+AGG | + | chr2_3:52990371-52990390 | None:intergenic | 35.0% |
| TCTCATCTTGCTTTCTTTCT+TGG | - | chr2_3:52990385-52990404 | Msa0298780:CDS | 35.0% | |
| GAAGCTACAACTTGAGTTTA+AGG | + | chr2_3:52990569-52990588 | None:intergenic | 35.0% | |
| ! | TTTGAAGTTCTCTTCTCTCT+GGG | - | chr2_3:52990639-52990658 | Msa0298780:intron | 35.0% |
| TCACTTGCATGAATTTACCT+GGG | + | chr2_3:52990971-52990990 | None:intergenic | 35.0% | |
| AGGTAAATTCATGCAAGTGA+GGG | - | chr2_3:52990971-52990990 | Msa0298780:intron | 35.0% | |
| GAACATAGATCATAGAGCAA+AGG | + | chr2_3:52991007-52991026 | None:intergenic | 35.0% | |
| TATGTGCTGTGAATTTGTGA+TGG | - | chr2_3:52991029-52991048 | Msa0298780:intron | 35.0% | |
| TGTTCAGAAGTTAGTAACTC+TGG | - | chr2_3:52991076-52991095 | Msa0298780:intron | 35.0% | |
| GTTCAGAAGTTAGTAACTCT+GGG | - | chr2_3:52991077-52991096 | Msa0298780:intron | 35.0% | |
| TTCAGAAGTTAGTAACTCTG+GGG | - | chr2_3:52991078-52991097 | Msa0298780:intron | 35.0% | |
| ! | TTAGTATTTTGTTGGAGGTG+AGG | - | chr2_3:52991153-52991172 | Msa0298780:intron | 35.0% |
| AGTTAAGCAGTCAAGTGTTA+AGG | + | chr2_3:52991195-52991214 | None:intergenic | 35.0% | |
| ! | GGGATATAAGTTTAGCTTAG+TGG | + | chr2_3:52991230-52991249 | None:intergenic | 35.0% |
| GAAAGTTCAGAAAAAGAAGC+TGG | + | chr2_3:52991528-52991547 | None:intergenic | 35.0% | |
| ! | TATTTTACTGTGGTTGTTGC+TGG | + | chr2_3:52991649-52991668 | None:intergenic | 35.0% |
| TTACTATGTTTCTCTCAGGT+TGG | - | chr2_3:52991736-52991755 | Msa0298780:intron | 35.0% | |
| ! | CCTCAATGAAATTTGAAGTC+GGG | + | chr2_3:52991881-52991900 | None:intergenic | 35.0% |
| ! | CCCTCAATGAAATTTGAAGT+CGG | + | chr2_3:52991882-52991901 | None:intergenic | 35.0% |
| CCGACTTCAAATTTCATTGA+GGG | - | chr2_3:52991879-52991898 | Msa0298780:intron | 35.0% | |
| CGACTTCAAATTTCATTGAG+GGG | - | chr2_3:52991880-52991899 | Msa0298780:intron | 35.0% | |
| GACTTCAAATTTCATTGAGG+GGG | - | chr2_3:52991881-52991900 | Msa0298780:intron | 35.0% | |
| !! | TGATTTTGAAGATCGTCCTA+AGG | + | chr2_3:52991916-52991935 | None:intergenic | 35.0% |
| ATCAACAATCTTCGTCTACA+AGG | + | chr2_3:52992110-52992129 | None:intergenic | 35.0% | |
| ! | CACCCAAGTGTATTTCTATA+TGG | - | chr2_3:52992323-52992342 | Msa0298780:five_prime_UTR | 35.0% |
| TTTGCAGTGTACGATGAAAC+TGG | + | chr2_3:52985216-52985235 | None:intergenic | 40.0% | |
| ! | TCAACACCCGAATTTCAAGT+AGG | - | chr2_3:52985341-52985360 | Msa0298780:three_prime_UTR | 40.0% |
| ! | TCGTTGGCCTACTTGAAATT+CGG | + | chr2_3:52985351-52985370 | None:intergenic | 40.0% |
| !! | AATCATGGGTTGGAGTTGAT+TGG | - | chr2_3:52985441-52985460 | Msa0298780:three_prime_UTR | 40.0% |
| !! | ATCATGGGTTGGAGTTGATT+GGG | - | chr2_3:52985442-52985461 | Msa0298780:three_prime_UTR | 40.0% |
| ATGGATCCATCAATGGTGTT+CGG | - | chr2_3:52985486-52985505 | Msa0298780:exon | 40.0% | |
| ! | CTTCTTTTCTCACGAGCTTA+TGG | + | chr2_3:52985882-52985901 | None:intergenic | 40.0% |
| AATTTGGCATTGCCAAACAG+AGG | - | chr2_3:52985954-52985973 | Msa0298780:intron | 40.0% | |
| ! | AGCAATTTTCCACCTCTGTT+TGG | + | chr2_3:52985969-52985988 | None:intergenic | 40.0% |
| AAACAGAGGTGGAAAATTGC+TGG | - | chr2_3:52985968-52985987 | Msa0298780:intron | 40.0% | |
| AATCTGACATGAAACTCCAG+GGG | + | chr2_3:52986281-52986300 | None:intergenic | 40.0% | |
| CTAATCTGACATGAAACTCC+AGG | + | chr2_3:52986283-52986302 | None:intergenic | 40.0% | |
| !!! | GTGGCATCGGTTTTTGTTTT+TGG | - | chr2_3:52986387-52986406 | Msa0298780:intron | 40.0% |
| !!! | CATCGGTTTTTGTTTTTGGG+CGG | - | chr2_3:52986391-52986410 | Msa0298780:intron | 40.0% |
| !!! | ATCGGTTTTTGTTTTTGGGC+GGG | - | chr2_3:52986392-52986411 | Msa0298780:intron | 40.0% |
| TGAAGAATCGTGGTCAAATG+TGG | - | chr2_3:52986527-52986546 | Msa0298780:intron | 40.0% | |
| AAGGTTTGTGACCTCAATCT+GGG | + | chr2_3:52986616-52986635 | None:intergenic | 40.0% | |
| AAAGGTTTGTGACCTCAATC+TGG | + | chr2_3:52986617-52986636 | None:intergenic | 40.0% | |
| ATACAAGAACTGGATCTGTC+CGG | - | chr2_3:52986768-52986787 | Msa0298780:intron | 40.0% | |
| ! | TTTTGTGCACTATTCTCTCC+TGG | - | chr2_3:52986831-52986850 | Msa0298780:intron | 40.0% |
| !! | CCCACTATCTTTTTAGCGAT+TGG | - | chr2_3:52987054-52987073 | Msa0298780:intron | 40.0% |
| ! | ACACGGATGCTTTTCAGTAA+TGG | + | chr2_3:52987215-52987234 | None:intergenic | 40.0% |
| AGGACAAGGAGAAACATAAC+AGG | + | chr2_3:52987551-52987570 | None:intergenic | 40.0% | |
| TTCTCTGCGACTGTTGAATT+TGG | - | chr2_3:52987863-52987882 | Msa0298780:intron | 40.0% | |
| TGAAGCTTTCTCAGCTAAGA+TGG | - | chr2_3:52987919-52987938 | Msa0298780:intron | 40.0% | |
| GAATGACATCCCAACTATGT+CGG | + | chr2_3:52988129-52988148 | None:intergenic | 40.0% | |
| TGGCTAGCAGAAACAATAAC+TGG | + | chr2_3:52988301-52988320 | None:intergenic | 40.0% | |
| ! | ACGGCACAGGAATTTTTCTA+GGG | + | chr2_3:52988454-52988473 | None:intergenic | 40.0% |
| ! | AACGGCACAGGAATTTTTCT+AGG | + | chr2_3:52988455-52988474 | None:intergenic | 40.0% |
| TAGAAAAATTCCTGTGCCGT+TGG | - | chr2_3:52988454-52988473 | Msa0298780:intron | 40.0% | |
| GCATTATCATACCCAACAGA+AGG | + | chr2_3:52988660-52988679 | None:intergenic | 40.0% | |
| ! | TGTTTCCTAACTTGGTGGTA+AGG | - | chr2_3:52988811-52988830 | Msa0298780:CDS | 40.0% |
| AAGAACCTTACCACCAAGTT+AGG | + | chr2_3:52988819-52988838 | None:intergenic | 40.0% | |
| ATGATTATGCATGCATGGCA+TGG | - | chr2_3:52988885-52988904 | Msa0298780:intron | 40.0% | |
| TGCATGCTGAAATATCAGGT+TGG | + | chr2_3:52988960-52988979 | None:intergenic | 40.0% | |
| GGGATTATGGTGCTCAATAA+TGG | + | chr2_3:52989225-52989244 | None:intergenic | 40.0% | |
| TCTGCAAAATTCCTCTCCTA+AGG | + | chr2_3:52989357-52989376 | None:intergenic | 40.0% | |
| CTTTCGCAGCATCAGTTATT+GGG | + | chr2_3:52989626-52989645 | None:intergenic | 40.0% | |
| CGAGCGATCAAAACAAATCT+TGG | + | chr2_3:52989657-52989676 | None:intergenic | 40.0% | |
| TCAGATATTGAATGGGAGTG+AGG | - | chr2_3:52989689-52989708 | Msa0298780:intron | 40.0% | |
| TTCACGTGAGGTAATCTGAA+AGG | + | chr2_3:52989796-52989815 | None:intergenic | 40.0% | |
| TTCAGATTACCTCACGTGAA+AGG | - | chr2_3:52989796-52989815 | Msa0298780:intron | 40.0% | |
| !! | AAAGGAAGGACTCTGAGATT+AGG | - | chr2_3:52989814-52989833 | Msa0298780:intron | 40.0% |
| AAAGAGATCACTCTCTCCAA+AGG | + | chr2_3:52990124-52990143 | None:intergenic | 40.0% | |
| CATGGAATACAGTCATCCAA+TGG | + | chr2_3:52990235-52990254 | None:intergenic | 40.0% | |
| CATTGGATGACTGTATTCCA+TGG | - | chr2_3:52990233-52990252 | Msa0298780:CDS | 40.0% | |
| TGACTGTATTCCATGGAAAG+CGG | - | chr2_3:52990240-52990259 | Msa0298780:CDS | 40.0% | |
| CAGTTAATTTCCGCTTTCCA+TGG | + | chr2_3:52990253-52990272 | None:intergenic | 40.0% | |
| ATTAACTGCTTCTTCCCTTC+TGG | - | chr2_3:52990265-52990284 | Msa0298780:intron | 40.0% | |
| GCAAGATGAGAGAAATTCTC+TGG | + | chr2_3:52990376-52990395 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTTCTCTTCTCTC+TGG | - | chr2_3:52990638-52990657 | Msa0298780:intron | 40.0% |
| ! | TTTGGTTCCCCTTTAAGGAA+TGG | - | chr2_3:52990783-52990802 | Msa0298780:intron | 40.0% |
| TCCAATGGCCATTCCTTAAA+GGG | + | chr2_3:52990794-52990813 | None:intergenic | 40.0% | |
| CACTTGCATGAATTTACCTG+GGG | + | chr2_3:52990970-52990989 | None:intergenic | 40.0% | |
| CTCACTTGCATGAATTTACC+TGG | + | chr2_3:52990972-52990991 | None:intergenic | 40.0% | |
| CAGGTAAATTCATGCAAGTG+AGG | - | chr2_3:52990970-52990989 | Msa0298780:intron | 40.0% | |
| GGTAAATTCATGCAAGTGAG+GGG | - | chr2_3:52990972-52990991 | Msa0298780:intron | 40.0% | |
| TCAGAAGTTAGTAACTCTGG+GGG | - | chr2_3:52991079-52991098 | Msa0298780:intron | 40.0% | |
| ! | TATTTTGTTGGAGGTGAGGA+TGG | - | chr2_3:52991157-52991176 | Msa0298780:intron | 40.0% |
| AAGCAGTCAAGTGTTAAGGT+GGG | + | chr2_3:52991191-52991210 | None:intergenic | 40.0% | |
| TAAGCAGTCAAGTGTTAAGG+TGG | + | chr2_3:52991192-52991211 | None:intergenic | 40.0% | |
| ! | GTCTAGTGAACTAGTCTGAT+TGG | - | chr2_3:52991303-52991322 | Msa0298780:intron | 40.0% |
| ATCCTGAGCTAATTGCTTGT+GGG | + | chr2_3:52991470-52991489 | None:intergenic | 40.0% | |
| AATCCTGAGCTAATTGCTTG+TGG | + | chr2_3:52991471-52991490 | None:intergenic | 40.0% | |
| TAGCTCAGGATTCTTGTGTA+TGG | - | chr2_3:52991479-52991498 | Msa0298780:intron | 40.0% | |
| !!! | CAATGGTTTTTTCTCACCCA+TGG | + | chr2_3:52991614-52991633 | None:intergenic | 40.0% |
| CCCGACTTCAAATTTCATTG+AGG | - | chr2_3:52991878-52991897 | Msa0298780:intron | 40.0% | |
| ACATATGTACTCGGATTGTG+TGG | - | chr2_3:52992405-52992424 | Msa0298780:five_prime_UTR | 40.0% | |
| CGGATTGTGTGGAAAGTTAT+TGG | - | chr2_3:52992416-52992435 | Msa0298780:five_prime_UTR | 40.0% | |
| CAGTGTACGATGAAACTGGT+CGG | + | chr2_3:52985212-52985231 | None:intergenic | 45.0% | |
| ! | CGTTGGCCTACTTGAAATTC+GGG | + | chr2_3:52985350-52985369 | None:intergenic | 45.0% |
| TCTGGTGATTCAACGCGAAT+CGG | - | chr2_3:52985380-52985399 | Msa0298780:three_prime_UTR | 45.0% | |
| ATCGGCACAGTGAAGTATGT+TGG | - | chr2_3:52985398-52985417 | Msa0298780:three_prime_UTR | 45.0% | |
| GGCTATTCAGAATCATGGGT+TGG | - | chr2_3:52985431-52985450 | Msa0298780:three_prime_UTR | 45.0% | |
| ! | GTTGGAGTTGATTGGGATCA+TGG | - | chr2_3:52985449-52985468 | Msa0298780:three_prime_UTR | 45.0% |
| GTTGATTGGGATCATGGAGA+TGG | - | chr2_3:52985455-52985474 | Msa0298780:three_prime_UTR | 45.0% | |
| CATGGAGATGGCAAACATGA+TGG | - | chr2_3:52985467-52985486 | Msa0298780:three_prime_UTR | 45.0% | |
| ! | CATTTTATATGTTGGGGCGC+AGG | + | chr2_3:52986000-52986019 | None:intergenic | 45.0% |
| TTTATGGGTGTTAGTTCCCC+TGG | - | chr2_3:52986262-52986281 | Msa0298780:intron | 45.0% | |
| !!! | TCGGTTTTTGTTTTTGGGCG+GGG | - | chr2_3:52986393-52986412 | Msa0298780:intron | 45.0% |
| !!! | TTTTTGTTTTTGGGCGGGGA+GGG | - | chr2_3:52986397-52986416 | Msa0298780:intron | 45.0% |
| TCGTGGTCAAATGTGGTTGA+CGG | - | chr2_3:52986534-52986553 | Msa0298780:intron | 45.0% | |
| TTGCAACACAACCACGATTG+AGG | + | chr2_3:52986562-52986581 | None:intergenic | 45.0% | |
| TACAAGAACTGGATCTGTCC+GGG | - | chr2_3:52986769-52986788 | Msa0298780:intron | 45.0% | |
| TCTGTCCGGGAATCTTCTTT+CGG | - | chr2_3:52986782-52986801 | Msa0298780:intron | 45.0% | |
| GAATCTTCTTTCGGAGTGGA+AGG | - | chr2_3:52986791-52986810 | Msa0298780:intron | 45.0% | |
| ! | GGAAGGTATGTTCTGCAACT+AGG | - | chr2_3:52986808-52986827 | Msa0298780:intron | 45.0% |
| TGAACAGTTACCTGCTCTGA+AGG | - | chr2_3:52987142-52987161 | Msa0298780:intron | 45.0% | |
| !! | ACTGAAAAGCATCCGTGTTC+TGG | - | chr2_3:52987217-52987236 | Msa0298780:intron | 45.0% |
| TATTGCCTTTGTAACTGGGC+AGG | - | chr2_3:52987346-52987365 | Msa0298780:intron | 45.0% | |
| TTCAACCTGCCCAGTTACAA+AGG | + | chr2_3:52987354-52987373 | None:intergenic | 45.0% | |
| GACACAGGCTGAACAGAAAA+AGG | + | chr2_3:52987819-52987838 | None:intergenic | 45.0% | |
| CTGTGTCATCCTCTATGGTT+CGG | - | chr2_3:52987832-52987851 | Msa0298780:intron | 45.0% | |
| TGTGTCATCCTCTATGGTTC+GGG | - | chr2_3:52987833-52987852 | Msa0298780:intron | 45.0% | |
| ATCAAAACCCCGAACCATAG+AGG | + | chr2_3:52987844-52987863 | None:intergenic | 45.0% | |
| GCTTTCTCAGCTAAGATGGT+TGG | - | chr2_3:52987923-52987942 | Msa0298780:CDS | 45.0% | |
| ! | CTTTGTACTCCCTTGGGTTT+TGG | - | chr2_3:52988011-52988030 | Msa0298780:intron | 45.0% |
| TGGAGTAGACCAAAACCCAA+GGG | + | chr2_3:52988023-52988042 | None:intergenic | 45.0% | |
| !! | GTTTTGGTCTACTCCACCTA+AGG | - | chr2_3:52988027-52988046 | Msa0298780:intron | 45.0% |
| TCAATGATACGTGAAGGGGA+TGG | - | chr2_3:52988099-52988118 | Msa0298780:intron | 45.0% | |
| CAATGATACGTGAAGGGGAT+GGG | - | chr2_3:52988100-52988119 | Msa0298780:intron | 45.0% | |
| AATGATACGTGAAGGGGATG+GGG | - | chr2_3:52988101-52988120 | Msa0298780:intron | 45.0% | |
| ATGAATCAGAAGTTACGGGC+TGG | - | chr2_3:52988611-52988630 | Msa0298780:intron | 45.0% | |
| !! | AGGCAGCGCAGTTTTTGAAA+GGG | + | chr2_3:52988640-52988659 | None:intergenic | 45.0% |
| ! | AAGGCAGCGCAGTTTTTGAA+AGG | + | chr2_3:52988641-52988660 | None:intergenic | 45.0% |
| CTGAAACGCGTTGTGAATTC+TGG | - | chr2_3:52988704-52988723 | Msa0298780:intron | 45.0% | |
| TCCTACATATGCCTTAGGAG+AGG | - | chr2_3:52989343-52989362 | Msa0298780:intron | 45.0% | |
| TCCTCTCCTAAGGCATATGT+AGG | + | chr2_3:52989347-52989366 | None:intergenic | 45.0% | |
| CCTTTCGCAGCATCAGTTAT+TGG | + | chr2_3:52989627-52989646 | None:intergenic | 45.0% | |
| CCAATAACTGATGCTGCGAA+AGG | - | chr2_3:52989624-52989643 | Msa0298780:intron | 45.0% | |
| ATAACTGATGCTGCGAAAGG+TGG | - | chr2_3:52989627-52989646 | Msa0298780:intron | 45.0% | |
| TAACTGATGCTGCGAAAGGT+GGG | - | chr2_3:52989628-52989647 | Msa0298780:intron | 45.0% | |
| GATTACCTCACGTGAAAGGA+AGG | - | chr2_3:52989800-52989819 | Msa0298780:intron | 45.0% | |
| ACATTTCCTCATTGGAGAGC+TGG | - | chr2_3:52990048-52990067 | Msa0298780:intron | 45.0% | |
| TCATTTCCCTGTCATGCCTT+TGG | - | chr2_3:52990105-52990124 | Msa0298780:intron | 45.0% | |
| GTAGCTCTCCTTGTCATTGT+TGG | - | chr2_3:52990195-52990214 | Msa0298780:CDS | 45.0% | |
| ! | CTCACAAGAGTGGGTTTGAT+TGG | + | chr2_3:52990534-52990553 | None:intergenic | 45.0% |
| CTGACACAACTCACAAGAGT+GGG | + | chr2_3:52990543-52990562 | None:intergenic | 45.0% | |
| TCTGACACAACTCACAAGAG+TGG | + | chr2_3:52990544-52990563 | None:intergenic | 45.0% | |
| !! | TGTGGTTTGGTTCCCCTTTA+AGG | - | chr2_3:52990778-52990797 | Msa0298780:intron | 45.0% |
| CCAATGGCCATTCCTTAAAG+GGG | + | chr2_3:52990793-52990812 | None:intergenic | 45.0% | |
| GTCCAATGGCCATTCCTTAA+AGG | + | chr2_3:52990795-52990814 | None:intergenic | 45.0% | |
| TGGCCATTGGACTCATGTAT+TGG | - | chr2_3:52990803-52990822 | Msa0298780:intron | 45.0% | |
| GAGCCAATACATGAGTCCAA+TGG | + | chr2_3:52990809-52990828 | None:intergenic | 45.0% | |
| !! | GGGTGCTGTTTGATTTCTTC+AGG | + | chr2_3:52990950-52990969 | None:intergenic | 45.0% |
| AAGAAATCAAACAGCACCCC+AGG | - | chr2_3:52990951-52990970 | Msa0298780:intron | 45.0% | |
| CAGAAGTTAGTAACTCTGGG+GGG | - | chr2_3:52991080-52991099 | Msa0298780:intron | 45.0% | |
| TCAAGTGTTAAGGTGGGAGA+GGG | + | chr2_3:52991185-52991204 | None:intergenic | 45.0% | |
| GAAGATCAACCGCCTTCAAT+TGG | - | chr2_3:52991432-52991451 | Msa0298780:CDS | 45.0% | |
| CCAGTTGTTCCAATTGAAGG+CGG | + | chr2_3:52991444-52991463 | None:intergenic | 45.0% | |
| CCACCAGTTGTTCCAATTGA+AGG | + | chr2_3:52991447-52991466 | None:intergenic | 45.0% | |
| CCTTCAATTGGAACAACTGG+TGG | - | chr2_3:52991444-52991463 | Msa0298780:CDS | 45.0% | |
| ! | AAGTGTGTTGGAGCATCCAT+GGG | - | chr2_3:52991595-52991614 | Msa0298780:intron | 45.0% |
| GAGTCATTGTCAAGCAGCAA+GGG | + | chr2_3:52992045-52992064 | None:intergenic | 45.0% | |
| CAATGACTCGTCATCGCTTA+TGG | - | chr2_3:52992056-52992075 | Msa0298780:CDS | 45.0% | |
| TCGTCATCGCTTATGGACTT+TGG | - | chr2_3:52992063-52992082 | Msa0298780:CDS | 45.0% | |
| CGTCATCGCTTATGGACTTT+GGG | - | chr2_3:52992064-52992083 | Msa0298780:CDS | 45.0% | |
| GTCATCGCTTATGGACTTTG+GGG | - | chr2_3:52992065-52992084 | Msa0298780:CDS | 45.0% | |
| !!! | TATTTTATTTATATGTATTT+TGG | - | chr2_3:52986081-52986100 | Msa0298780:intron | 5.0% |
| !!! | ATTTTATTTATATGTATTTT+GGG | - | chr2_3:52986082-52986101 | Msa0298780:intron | 5.0% |
| !! | CTTTATATAATAAAAAAAAA+TGG | + | chr2_3:52986343-52986362 | None:intergenic | 5.0% |
| !! | AGTTTAAAAAAAAAAAAAAA+TGG | + | chr2_3:52988175-52988194 | None:intergenic | 5.0% |
| !! | TAAATAAAATAAATAGAAAA+AGG | + | chr2_3:52988861-52988880 | None:intergenic | 5.0% |
| TGTACGATGAAACTGGTCGG+CGG | + | chr2_3:52985209-52985228 | None:intergenic | 50.0% | |
| CACCAGATGCATGTACTCGT+TGG | + | chr2_3:52985367-52985386 | None:intergenic | 50.0% | |
| TTGGCATTGCCAAACAGAGG+TGG | - | chr2_3:52985957-52985976 | Msa0298780:intron | 50.0% | |
| !!! | GTTTTTGTTTTTGGGCGGGG+AGG | - | chr2_3:52986396-52986415 | Msa0298780:intron | 50.0% |
| CGTGGTCAAATGTGGTTGAC+GGG | - | chr2_3:52986535-52986554 | Msa0298780:intron | 50.0% | |
| GTGGTCAAATGTGGTTGACG+GGG | - | chr2_3:52986536-52986555 | Msa0298780:intron | 50.0% | |
| TTATGCTGCAGCCCAGATTG+AGG | - | chr2_3:52986602-52986621 | Msa0298780:intron | 50.0% | |
| CCACTCCGAAAGAAGATTCC+CGG | + | chr2_3:52986790-52986809 | None:intergenic | 50.0% | |
| TCAAAGCTACAGCAGTAGCC+AGG | + | chr2_3:52986852-52986871 | None:intergenic | 50.0% | |
| AAGTTGAGAGCCTTCAGAGC+AGG | + | chr2_3:52987155-52987174 | None:intergenic | 50.0% | |
| AACCTGCTCCCAATCTACAC+CGG | + | chr2_3:52987255-52987274 | None:intergenic | 50.0% | |
| TCAGCCTGTGTCATCCTCTA+TGG | - | chr2_3:52987827-52987846 | Msa0298780:intron | 50.0% | |
| CGAACCATAGAGGATGACAC+AGG | + | chr2_3:52987834-52987853 | None:intergenic | 50.0% | |
| GTGTCATCCTCTATGGTTCG+GGG | - | chr2_3:52987834-52987853 | Msa0298780:intron | 50.0% | |
| GTGGAGTAGACCAAAACCCA+AGG | + | chr2_3:52988024-52988043 | None:intergenic | 50.0% | |
| CCAAATCTAACCAACGGCAC+AGG | + | chr2_3:52988467-52988486 | None:intergenic | 50.0% | |
| ! | CCTGTGCCGTTGGTTAGATT+TGG | - | chr2_3:52988464-52988483 | Msa0298780:intron | 50.0% |
| AAAACTGCGCTGCCTTCTGT+TGG | - | chr2_3:52988645-52988664 | Msa0298780:intron | 50.0% | |
| AAACTGCGCTGCCTTCTGTT+GGG | - | chr2_3:52988646-52988665 | Msa0298780:intron | 50.0% | |
| ! | CAGCATGCAGTTTTCCCTTC+TGG | - | chr2_3:52988971-52988990 | Msa0298780:CDS | 50.0% |
| GCAATGAGTGACGCTCTTTC+TGG | - | chr2_3:52989314-52989333 | Msa0298780:intron | 50.0% | |
| AACTGATGCTGCGAAAGGTG+GGG | - | chr2_3:52989629-52989648 | Msa0298780:intron | 50.0% | |
| AGAGTCCTTCCTTTCACGTG+AGG | + | chr2_3:52989808-52989827 | None:intergenic | 50.0% | |
| AACAAGCCAGCTCTCCAATG+AGG | + | chr2_3:52990057-52990076 | None:intergenic | 50.0% | |
| ! | CTCTCTCCAAAGGCATGACA+GGG | + | chr2_3:52990114-52990133 | None:intergenic | 50.0% |
| ! | ACTCTCTCCAAAGGCATGAC+AGG | + | chr2_3:52990115-52990134 | None:intergenic | 50.0% |
| TGTACCTGCTCGTTCGAGAA+TGG | + | chr2_3:52990411-52990430 | None:intergenic | 50.0% | |
| CAGGAGGCTCAGAAACGTTT+GGG | + | chr2_3:52990441-52990460 | None:intergenic | 50.0% | |
| CAAACGTTTCTGAGCCTCCT+GGG | - | chr2_3:52990440-52990459 | Msa0298780:CDS | 50.0% | |
| ! | TAGATAGCTGGTGCCAATCC+AGG | + | chr2_3:52990612-52990631 | None:intergenic | 50.0% |
| ! | CCCCTTTAAGGAATGGCCAT+TGG | - | chr2_3:52990790-52990809 | Msa0298780:intron | 50.0% |
| ! | ATGCAGGTATGTTCGGCTTG+TGG | - | chr2_3:52990904-52990923 | Msa0298780:intron | 50.0% |
| ! | ATGTTCGGCTTGTGGTCTCA+AGG | - | chr2_3:52990912-52990931 | Msa0298780:intron | 50.0% |
| TCATGCAAGTGAGGGGTTGT+TGG | - | chr2_3:52990979-52990998 | Msa0298780:intron | 50.0% | |
| CATGCAAGTGAGGGGTTGTT+GGG | - | chr2_3:52990980-52990999 | Msa0298780:intron | 50.0% | |
| GTCAAGTGTTAAGGTGGGAG+AGG | + | chr2_3:52991186-52991205 | None:intergenic | 50.0% | |
| CCGCCTTCAATTGGAACAAC+TGG | - | chr2_3:52991441-52991460 | Msa0298780:CDS | 50.0% | |
| !! | GCTGTCACTCTGAAGTGTGT+TGG | - | chr2_3:52991583-52991602 | Msa0298780:intron | 50.0% |
| ! | GAAGTGTGTTGGAGCATCCA+TGG | - | chr2_3:52991594-52991613 | Msa0298780:intron | 50.0% |
| GCTGGCAGCTTCTTTGTCAA+TGG | + | chr2_3:52991631-52991650 | None:intergenic | 50.0% | |
| TTGTCAAGCAGCAAGGGCAA+TGG | + | chr2_3:52992039-52992058 | None:intergenic | 50.0% | |
| CGAGTCATTGTCAAGCAGCA+AGG | + | chr2_3:52992046-52992065 | None:intergenic | 50.0% | |
| !! | TCGCTTATGGACTTTGGGGT+TGG | - | chr2_3:52992069-52992088 | Msa0298780:CDS | 50.0% |
| !!! | GTGTTTTAGTAGCGAGCACG+AGG | + | chr2_3:52992306-52992325 | None:intergenic | 50.0% |
| GGCCAACGAGTACATGCATC+TGG | - | chr2_3:52985362-52985381 | Msa0298780:three_prime_UTR | 55.0% | |
| CCGGGAATCTTCTTTCGGAG+TGG | - | chr2_3:52986787-52986806 | Msa0298780:intron | 55.0% | |
| TACCGGTGTAGATTGGGAGC+AGG | - | chr2_3:52987250-52987269 | Msa0298780:intron | 55.0% | |
| !! | GATGGGGTGCCGACATAGTT+GGG | - | chr2_3:52988117-52988136 | Msa0298780:intron | 55.0% |
| TTGGCCATTCTCGAACGAGC+AGG | - | chr2_3:52990404-52990423 | Msa0298780:CDS | 55.0% | |
| CCAGGAGGCTCAGAAACGTT+TGG | + | chr2_3:52990442-52990461 | None:intergenic | 55.0% | |
| CCAAACGTTTCTGAGCCTCC+TGG | - | chr2_3:52990439-52990458 | Msa0298780:CDS | 55.0% | |
| !! | GGCGCTTTATTTGACCCAGG+AGG | + | chr2_3:52990457-52990476 | None:intergenic | 55.0% |
| !! | CTGGGCGCTTTATTTGACCC+AGG | + | chr2_3:52990460-52990479 | None:intergenic | 55.0% |
| GGCCCACAAGCAATTAGCTC+AGG | - | chr2_3:52991465-52991484 | Msa0298780:CDS | 55.0% | |
| GAGGGGGAAGCAACAACCTT+AGG | - | chr2_3:52991897-52991916 | Msa0298780:intron | 55.0% | |
| !! | GGATGGGGTGCCGACATAGT+TGG | - | chr2_3:52988116-52988135 | Msa0298780:intron | 60.0% |
| AATCCAGGCAGCAGGGGGAT+TGG | + | chr2_3:52990597-52990616 | None:intergenic | 60.0% | |
| AATCCCCCTGCTGCCTGGAT+TGG | - | chr2_3:52990596-52990615 | Msa0298780:intron | 60.0% | |
| ! | TGGTGCCAATCCAGGCAGCA+GGG | + | chr2_3:52990604-52990623 | None:intergenic | 60.0% |
| GGTTGACGGGGCCTCAATCG+TGG | - | chr2_3:52986548-52986567 | Msa0298780:intron | 65.0% | |
| ! | GGCAGCAGGGGGATTGGTAC+AGG | + | chr2_3:52990591-52990610 | None:intergenic | 65.0% |
| GTACCAATCCCCCTGCTGCC+TGG | - | chr2_3:52990591-52990610 | Msa0298780:intron | 65.0% | |
| GTGCCAATCCAGGCAGCAGG+GGG | + | chr2_3:52990602-52990621 | None:intergenic | 65.0% | |
| GGTGCCAATCCAGGCAGCAG+GGG | + | chr2_3:52990603-52990622 | None:intergenic | 65.0% | |
| ! | CTGGTGCCAATCCAGGCAGC+AGG | + | chr2_3:52990605-52990624 | None:intergenic | 65.0% |
| AAACTGGTCGGCGGCGTCGC+AGG | + | chr2_3:52985200-52985219 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52985178 | 52992452 | 52985178 | ID=Msa0298780;Name=Msa0298780 |
| chr2_3 | mRNA | 52985178 | 52992452 | 52985178 | ID=Msa0298780-mRNA-1;Parent=Msa0298780;Name=Msa0298780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=145|1|1|1|1|1|15|324|534 |
| chr2_3 | exon | 52985178 | 52985600 | 52985178 | ID=Msa0298780-mRNA-1:exon:17022;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52985799 | 52985876 | 52985799 | ID=Msa0298780-mRNA-1:exon:17021;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52985970 | 52986046 | 52985970 | ID=Msa0298780-mRNA-1:exon:17020;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52986135 | 52986229 | 52986135 | ID=Msa0298780-mRNA-1:exon:17019;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52986658 | 52986720 | 52986658 | ID=Msa0298780-mRNA-1:exon:17018;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52987795 | 52987829 | 52987795 | ID=Msa0298780-mRNA-1:exon:17017;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52987920 | 52988027 | 52987920 | ID=Msa0298780-mRNA-1:exon:17016;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52988803 | 52988864 | 52988803 | ID=Msa0298780-mRNA-1:exon:17015;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52988963 | 52989090 | 52988963 | ID=Msa0298780-mRNA-1:exon:17014;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52989690 | 52989799 | 52989690 | ID=Msa0298780-mRNA-1:exon:17013;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52990188 | 52990262 | 52990188 | ID=Msa0298780-mRNA-1:exon:17012;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52990359 | 52990505 | 52990359 | ID=Msa0298780-mRNA-1:exon:17011;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52990818 | 52990864 | 52990818 | ID=Msa0298780-mRNA-1:exon:17010;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52991314 | 52991484 | 52991314 | ID=Msa0298780-mRNA-1:exon:17009;Parent=Msa0298780-mRNA-1 |
| chr2_3 | exon | 52991998 | 52992452 | 52991998 | ID=Msa0298780-mRNA-1:exon:17008;Parent=Msa0298780-mRNA-1 |
| chr2_3 | five_prime_UTR | 52992308 | 52992452 | 52992308 | ID=Msa0298780-mRNA-1:five_prime_utr;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52991998 | 52992307 | 52991998 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52991314 | 52991484 | 52991314 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52990818 | 52990864 | 52990818 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52990359 | 52990505 | 52990359 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52990188 | 52990262 | 52990188 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52989690 | 52989799 | 52989690 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52988963 | 52989090 | 52988963 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52988803 | 52988864 | 52988803 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52987920 | 52988027 | 52987920 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52987795 | 52987829 | 52987795 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52986658 | 52986720 | 52986658 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52986135 | 52986229 | 52986135 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52985970 | 52986046 | 52985970 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52985799 | 52985876 | 52985799 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | CDS | 52985502 | 52985600 | 52985502 | ID=Msa0298780-mRNA-1:cds;Parent=Msa0298780-mRNA-1 |
| chr2_3 | three_prime_UTR | 52985178 | 52985501 | 52985178 | ID=Msa0298780-mRNA-1:three_prime_utr;Parent=Msa0298780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
