AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239940 MtrunA17_Chr8g0351881 85.271 387 26 4 1 364 1 379 0.0 639
Msa1239940 MtrunA17_Chr3g0087771 48.411 409 116 16 18 364 10 385 1.95e-97 295
Msa1239940 MtrunA17_Chr1g0174271 32.979 376 191 11 28 364 8 361 5.02e-35 132
Msa1239940 MtrunA17_Chr2g0329041 31.592 402 190 15 32 363 8 394 2.73e-30 119
Msa1239940 MtrunA17_Chr4g0032951 35.060 251 108 10 156 364 181 418 4.40e-28 114
Msa1239940 MtrunA17_Chr7g0258181 33.761 234 111 6 156 364 92 306 2.47e-21 93.2
Msa1239940 MtrunA17_Chr4g0014771 51.282 78 14 2 309 364 106 181 1.32e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239940 AT2G42280.1 30.914 372 166 12 40 364 15 342 2.92e-29 116
Msa1239940 AT2G42280.3 30.997 371 165 12 40 363 15 341 1.61e-28 114
Msa1239940 AT1G51140.1 28.912 377 204 13 32 366 15 369 1.89e-22 97.8
Msa1239940 AT2G42280.2 30.606 330 160 11 40 344 15 300 6.22e-22 95.1
Msa1239940 AT1G05805.1 30.400 375 174 13 36 366 17 348 3.35e-20 91.3
Msa1239940 AT2G43140.2 34.252 254 103 10 148 366 72 296 1.67e-19 88.2
Msa1239940 AT2G43140.1 38.750 160 46 7 239 366 60 199 1.40e-18 84.0
Msa1239940 AT1G35460.1 47.436 78 17 2 309 364 169 244 5.77e-13 68.6
Msa1239940 AT4G09180.1 39.216 102 40 1 285 364 146 247 5.08e-12 65.9

Find 61 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAAATGGATTCAAAATT+TGG 0.143373 8_2:-22083995 Msa1239940:CDS
TATTGTATTCCATGTGAAAA+AGG 0.176835 8_2:+22083731 None:intergenic
ACACTTCCTACCTCTCTTAA+TGG 0.183445 8_2:+22082250 None:intergenic
TGTTACCAGGGTGTAGATTT+TGG 0.188539 8_2:-22081254 Msa1239940:intron
ACCCTCTCTGCAATGCTTCT+AGG 0.208569 8_2:+22081095 None:intergenic
ACCACTATCAACCGAATAAT+TGG 0.239497 8_2:+22083544 None:intergenic
GGATTTCCAAATGGTTCTTT+AGG 0.260650 8_2:-22083650 Msa1239940:CDS
CAATACAATGATTACTCTTA+TGG 0.263413 8_2:-22083713 Msa1239940:CDS
AGAGAGGTAGGAAGTGTAAA+TGG 0.308528 8_2:-22082244 Msa1239940:CDS
TTCTTCCAAGATGGCTACTA+TGG 0.309052 8_2:-22081186 Msa1239940:CDS
ATCCTTGATTATGTTGAGTT+TGG 0.317397 8_2:+22083669 None:intergenic
GCGTTAAGCCGGAATTGTTT+TGG 0.328492 8_2:+22083945 None:intergenic
GTGAGTGGCAAAGCCTCTTT+TGG 0.336425 8_2:+22081118 None:intergenic
CTAGCTTCACCAATGACTAT+TGG 0.354204 8_2:-22082048 Msa1239940:CDS
TCCAATTATTCGGTTGATAG+TGG 0.369287 8_2:-22083545 Msa1239940:intron
CCCTCTCTGCAATGCTTCTA+GGG 0.373214 8_2:+22081096 None:intergenic
CTTCTCCATAGTAGCCATCT+TGG 0.374024 8_2:+22081181 None:intergenic
ACTACATCATCTAGTGGATA+TGG 0.382484 8_2:-22082214 Msa1239940:CDS
CATTGTCTCCAAAACAATTC+CGG 0.388810 8_2:-22083953 Msa1239940:CDS
TAGCTTCACCAATGACTATT+GGG 0.393465 8_2:-22082047 Msa1239940:CDS
TCCCTCTACAAGTTCAGAAA+TGG 0.398455 8_2:-22083807 Msa1239940:CDS
CACTGACAAAGATTCAGAAT+TGG 0.412608 8_2:+22083772 None:intergenic
AGAAACAAGGGAAATGATAA+TGG 0.421364 8_2:-22082091 Msa1239940:CDS
TCAACACCTAAAGAACCATT+TGG 0.425199 8_2:+22083644 None:intergenic
TTCAATGAAGAACACAGAAA+TGG 0.438657 8_2:-22084008 Msa1239940:CDS
GTCAGTGAAACAAGAAGAAA+AGG 0.444248 8_2:-22083756 Msa1239940:CDS
CCCTAGAAGCATTGCAGAGA+GGG 0.444514 8_2:-22081096 Msa1239940:intron
AATGGTTCTTTAGGTGTTGA+AGG 0.450234 8_2:-22083641 Msa1239940:CDS
TGTAAAATTCGTGCCAAAAG+AGG 0.450273 8_2:-22081131 Msa1239940:CDS
ATAATTGCTCCAATCTCATT+AGG 0.465778 8_2:-22083595 Msa1239940:CDS
AGCTAGGCAGACTCGAATGA+TGG 0.477888 8_2:+22081210 None:intergenic
AACCTATGTTTGTGTCTACA+AGG 0.486036 8_2:+22083888 None:intergenic
CATAATCAAGGATTTCCAAA+TGG 0.493678 8_2:-22083659 Msa1239940:CDS
AACTAGCACTGCTGATATGT+TGG 0.496568 8_2:-22080684 Msa1239940:CDS
AGAGCTCAGGAAACAACTTA+AGG 0.497819 8_2:-22080639 Msa1239940:CDS
AGAATTATCCCAATAGTCAT+TGG 0.498840 8_2:+22082039 None:intergenic
TTGAGTACATTAAAGAGCTC+AGG 0.507440 8_2:-22080652 Msa1239940:CDS
TACCAAACTCAACATAATCA+AGG 0.522748 8_2:-22083671 Msa1239940:CDS
TTCCATTTCTGAACTTGTAG+AGG 0.527988 8_2:+22083805 None:intergenic
GCCTAGCTCTTCTTCCAAGA+TGG 0.534945 8_2:-22081195 Msa1239940:CDS
TTCAAATGCTTTGGAAACTC+AGG 0.536728 8_2:-22081963 Msa1239940:intron
AGTTTCCAAAGCATTTGAAG+TGG 0.542415 8_2:+22081967 None:intergenic
TTTGCACCATTAAGAGAGGT+AGG 0.543973 8_2:-22082256 Msa1239940:CDS
TGAACGATACCGCGTTAAGC+CGG 0.550117 8_2:+22083934 None:intergenic
TCCATTTCTGAACTTGTAGA+GGG 0.558247 8_2:+22083806 None:intergenic
AGGCTTGTAAGTAATGAGCT+TGG 0.565645 8_2:+22083908 None:intergenic
AGATTCAGAATTGGTAAACA+TGG 0.566542 8_2:+22083781 None:intergenic
GCTAGGCAGACTCGAATGAT+GGG 0.571880 8_2:+22081211 None:intergenic
CAATAGTCATTGGTGAAGCT+AGG 0.577944 8_2:+22082049 None:intergenic
TGTATTAAAAGTAGAAACAA+GGG 0.578794 8_2:-22082103 Msa1239940:CDS
CAAGCTTTCAACTACTCTGA+AGG 0.588993 8_2:-22084034 Msa1239940:CDS
TGCAATGCTTCTAGGGTGAG+TGG 0.590036 8_2:+22081103 None:intergenic
TGGCATCTTGATAGAGCAAG+AGG 0.592401 8_2:+22082165 None:intergenic
TTGTATTAAAAGTAGAAACA+AGG 0.594830 8_2:-22082104 Msa1239940:CDS
CAAGCTACTACATCATCTAG+TGG 0.611174 8_2:-22082220 Msa1239940:CDS
AAAACAATTCCGGCTTAACG+CGG 0.617284 8_2:-22083943 Msa1239940:CDS
GCCATCTTGGAAGAAGAGCT+AGG 0.619465 8_2:+22081194 None:intergenic
ATCTTGATAGAGCAAGAGGA+TGG 0.627820 8_2:+22082169 None:intergenic
GCTTTCAACTACTCTGAAGG+TGG 0.629565 8_2:-22084031 Msa1239940:CDS
AGCCTTGTAGACACAAACAT+AGG 0.644549 8_2:-22083890 Msa1239940:CDS
ACCCTAGAAGCATTGCAGAG+AGG 0.691130 8_2:-22081097 Msa1239940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAGTAGTTTATATATAA+GGG + chr8_2:22082133-22082152 None:intergenic 10.0%
!!! AAAAATATATTTTCCTTTAT+AGG - chr8_2:22082366-22082385 Msa1239940:intron 10.0%
!!! AAAATATATTTTCCTTTATA+GGG - chr8_2:22082367-22082386 Msa1239940:intron 10.0%
!!! TAAAAAAAAAACATCAATTT+TGG + chr8_2:22083200-22083219 None:intergenic 10.0%
!! TTTAGTCATATAATTAACAT+AGG - chr8_2:22081467-22081486 Msa1239940:intron 15.0%
!!! AAACATATGTATATTTTTCT+AGG - chr8_2:22081904-22081923 Msa1239940:intron 15.0%
!! GTAAAAGTAGTTTATATATA+AGG + chr8_2:22082134-22082153 None:intergenic 15.0%
!!! AGGAAAATATATTTTTTCAT+TGG + chr8_2:22082362-22082381 None:intergenic 15.0%
!! AAAAAAAAAAGTGAAATTGA+TGG + chr8_2:22082913-22082932 None:intergenic 15.0%
!!! TGTTCAAATAAATTTGATTT+GGG - chr8_2:22083324-22083343 Msa1239940:intron 15.0%
!!! GTATGTTTTTTTATCTTACT+TGG - chr8_2:22081151-22081170 Msa1239940:CDS 20.0%
!!! TTTCTTTTTTTGATAATGCT+TGG - chr8_2:22081232-22081251 Msa1239940:CDS 20.0%
!!! ATACCTGTTCTTATTTTTTA+TGG - chr8_2:22081500-22081519 Msa1239940:intron 20.0%
!! TTTCCATAAAAAATAAGAAC+AGG + chr8_2:22081506-22081525 None:intergenic 20.0%
!! TGATAATATAGTAAAGCAAT+TGG - chr8_2:22081628-22081647 Msa1239940:intron 20.0%
!! GATAATATAGTAAAGCAATT+GGG - chr8_2:22081629-22081648 Msa1239940:intron 20.0%
!! ATAATTAATTGTCTATTCAC+CGG + chr8_2:22081754-22081773 None:intergenic 20.0%
!! GAATAGACAATTAATTATCT+TGG - chr8_2:22081756-22081775 Msa1239940:intron 20.0%
!! TAATTATCTTGGACATTATT+AGG - chr8_2:22081767-22081786 Msa1239940:intron 20.0%
!!! TATTTTCTTTAAGAAAAGCT+TGG - chr8_2:22082017-22082036 Msa1239940:CDS 20.0%
!!! ATTTTCTTTAAGAAAAGCTT+GGG - chr8_2:22082018-22082037 Msa1239940:CDS 20.0%
!! TTGGAATAAAGTTTGATAAA+GGG + chr8_2:22082068-22082087 None:intergenic 20.0%
!! ATTGGAATAAAGTTTGATAA+AGG + chr8_2:22082069-22082088 None:intergenic 20.0%
!!! TTCTAAAAAACTTGTACTAA+TGG - chr8_2:22082390-22082409 Msa1239940:intron 20.0%
!! TTGTATTAAAAGTAGAAACA+AGG - chr8_2:22082570-22082589 Msa1239940:intron 20.0%
!! TGTATTAAAAGTAGAAACAA+GGG - chr8_2:22082571-22082590 Msa1239940:intron 20.0%
!!! GAATTTTCATTTGAACTAAT+TGG - chr8_2:22082752-22082771 Msa1239940:intron 20.0%
!!! CTAAGTTTAGTCTTTAAAAA+TGG + chr8_2:22082778-22082797 None:intergenic 20.0%
!!! TTGAGTAAAAAATCTAGTTT+TGG + chr8_2:22082954-22082973 None:intergenic 20.0%
!!! TTCAAACATTGTTGTAATTT+TGG + chr8_2:22083144-22083163 None:intergenic 20.0%
!!! ATTAAAATCTTGTTTTCGAT+GGG - chr8_2:22083172-22083191 Msa1239940:intron 20.0%
!! GTGTTCAAATAAATTTGATT+TGG - chr8_2:22083323-22083342 Msa1239940:intron 20.0%
!!! GTTCAAATAAATTTGATTTG+GGG - chr8_2:22083325-22083344 Msa1239940:intron 20.0%
!! TGAAATTTGTGATTATAGAA+AGG + chr8_2:22083615-22083634 None:intergenic 20.0%
!! ACAGAAATGGATTCAAAATT+TGG - chr8_2:22080679-22080698 Msa1239940:CDS 25.0%
! ATTGTATTCCATGTGAAAAA+GGG + chr8_2:22080945-22080964 None:intergenic 25.0%
! TATTGTATTCCATGTGAAAA+AGG + chr8_2:22080946-22080965 None:intergenic 25.0%
! CAATACAATGATTACTCTTA+TGG - chr8_2:22080961-22080980 Msa1239940:intron 25.0%
!! TGAGTTTTTCTCCAATTATT+CGG - chr8_2:22081119-22081138 Msa1239940:CDS 25.0%
!! TTACTTGGTAGTATCTATTA+TGG - chr8_2:22081166-22081185 Msa1239940:CDS 25.0%
! ATCAAGCTCAAATCTATTAT+CGG - chr8_2:22081256-22081275 Msa1239940:intron 25.0%
! AGATCTTATCTCATCAAATA+TGG + chr8_2:22081342-22081361 None:intergenic 25.0%
!! AAATCAGGTCTTTTCTTTTA+CGG + chr8_2:22081367-22081386 None:intergenic 25.0%
! GGATCAACTAAAAATTTAAG+AGG - chr8_2:22081402-22081421 Msa1239940:intron 25.0%
! ATATAATTAACATAGGAGAG+TGG - chr8_2:22081474-22081493 Msa1239940:intron 25.0%
! CAATAATACTGCACAAAATA+GGG + chr8_2:22081610-22081629 None:intergenic 25.0%
! TCAATAATACTGCACAAAAT+AGG + chr8_2:22081611-22081630 None:intergenic 25.0%
! TAATTAATTGTCTATTCACC+GGG + chr8_2:22081753-22081772 None:intergenic 25.0%
! GGAAATAATATGTGAAAAGA+AGG - chr8_2:22081822-22081841 Msa1239940:intron 25.0%
! ATGTGGAAATACTAAAGTTT+AGG - chr8_2:22081857-22081876 Msa1239940:intron 25.0%
!! ATACTAAAGTTTAGGTTAGA+AGG - chr8_2:22081865-22081884 Msa1239940:intron 25.0%
! TTATTCCAATTAGCAATACA+TGG - chr8_2:22082079-22082098 Msa1239940:CDS 25.0%
!!! TTTTTTCATTGGTATGACTT+AGG + chr8_2:22082351-22082370 None:intergenic 25.0%
!!! AGTTTTTTAGAACCCTATAA+AGG + chr8_2:22082382-22082401 None:intergenic 25.0%
!! TGTTCATTTTCAACAATTAG+TGG + chr8_2:22082532-22082551 None:intergenic 25.0%
! TCCAAAAAATGCTACTAATA+AGG - chr8_2:22082669-22082688 Msa1239940:intron 25.0%
! CCAAAAAATGCTACTAATAA+GGG - chr8_2:22082670-22082689 Msa1239940:intron 25.0%
!!! CTAAATATCGCCATTTTTTT+AGG - chr8_2:22083077-22083096 Msa1239940:intron 25.0%
!! CAATTTGGGGTAAAAAATAT+GGG - chr8_2:22083110-22083129 Msa1239940:intron 25.0%
!!! GATTAAAATCTTGTTTTCGA+TGG - chr8_2:22083171-22083190 Msa1239940:intron 25.0%
! TCAACAACGTTAAAAGTTTA+AGG + chr8_2:22083386-22083405 None:intergenic 25.0%
! ATATTACCTTATCTGCATTT+GGG + chr8_2:22083751-22083770 None:intergenic 25.0%
! TATATTACCTTATCTGCATT+TGG + chr8_2:22083752-22083771 None:intergenic 25.0%
! TAAAACACAACAAAAAAGCA+GGG + chr8_2:22083820-22083839 None:intergenic 25.0%
! TTAAAACACAACAAAAAAGC+AGG + chr8_2:22083821-22083840 None:intergenic 25.0%
!! TGTAACTTTTACTAAAACCA+CGG - chr8_2:22083843-22083862 Msa1239940:CDS 25.0%
! ACATAACACATCATATTGTT+GGG - chr8_2:22083911-22083930 Msa1239940:CDS 25.0%
TTCAATGAAGAACACAGAAA+TGG - chr8_2:22080666-22080685 Msa1239940:CDS 30.0%
AGATTCAGAATTGGTAAACA+TGG + chr8_2:22080896-22080915 None:intergenic 30.0%
TACCAAACTCAACATAATCA+AGG - chr8_2:22081003-22081022 Msa1239940:intron 30.0%
ATCCTTGATTATGTTGAGTT+TGG + chr8_2:22081008-22081027 None:intergenic 30.0%
CATAATCAAGGATTTCCAAA+TGG - chr8_2:22081015-22081034 Msa1239940:intron 30.0%
ATAATTGCTCCAATCTCATT+AGG - chr8_2:22081079-22081098 Msa1239940:intron 30.0%
AGCACTAACAATTACACAAA+AGG + chr8_2:22081197-22081216 None:intergenic 30.0%
TCAAGCTCAAATCTATTATC+GGG - chr8_2:22081257-22081276 Msa1239940:intron 30.0%
! TTGCTTGTTAGTTGTTAACT+AGG - chr8_2:22081562-22081581 Msa1239940:intron 30.0%
TCAAGAAATTAATTTCCTCC+CGG - chr8_2:22081732-22081751 Msa1239940:intron 30.0%
GAAGAGAAAAGGGTAAAAAT+GGG - chr8_2:22081793-22081812 Msa1239940:intron 30.0%
! TTAAGTTGTTTATCCAACCA+AGG + chr8_2:22082105-22082124 None:intergenic 30.0%
AAAAAACTTGTACTAATGGC+AGG - chr8_2:22082394-22082413 Msa1239940:intron 30.0%
AGAAACAAGGGAAATGATAA+TGG - chr8_2:22082583-22082602 Msa1239940:intron 30.0%
AGAATTATCCCAATAGTCAT+TGG + chr8_2:22082638-22082657 None:intergenic 30.0%
!!! CCCTTATTAGTAGCATTTTT+TGG + chr8_2:22082673-22082692 None:intergenic 30.0%
CTTCTTCAAGGTAAAATAGT+GGG + chr8_2:22082860-22082879 None:intergenic 30.0%
TCTTCTTCAAGGTAAAATAG+TGG + chr8_2:22082861-22082880 None:intergenic 30.0%
ATGGATCCTAATTTCGAAAT+CGG + chr8_2:22082894-22082913 None:intergenic 30.0%
! TTTAGGGGTGAAACTTTTTA+GGG + chr8_2:22082992-22083011 None:intergenic 30.0%
!! TTTTAGGGGTGAAACTTTTT+AGG + chr8_2:22082993-22083012 None:intergenic 30.0%
AAAAGTTTCACCCCTAAAAA+TGG - chr8_2:22082994-22083013 Msa1239940:intron 30.0%
!! CAAAAAGACACCATTTTTAG+GGG + chr8_2:22083007-22083026 None:intergenic 30.0%
!! GCAAAAAGACACCATTTTTA+GGG + chr8_2:22083008-22083027 None:intergenic 30.0%
CATCTTTAGATTCGAAATTG+GGG + chr8_2:22083030-22083049 None:intergenic 30.0%
CCATCTTTAGATTCGAAATT+GGG + chr8_2:22083031-22083050 None:intergenic 30.0%
!!! CCATATTTTTTACCCCAAAT+TGG + chr8_2:22083112-22083131 None:intergenic 30.0%
! CCAATTTGGGGTAAAAAATA+TGG - chr8_2:22083109-22083128 Msa1239940:intron 30.0%
! TACAACAATGTTTGAAACTG+AGG - chr8_2:22083148-22083167 Msa1239940:intron 30.0%
! ACAACAATGTTTGAAACTGA+GGG - chr8_2:22083149-22083168 Msa1239940:intron 30.0%
! CTACACGAGCAATTTTTATT+GGG + chr8_2:22083356-22083375 None:intergenic 30.0%
TAGCGAAAAATTATGTTACC+AGG - chr8_2:22083407-22083426 Msa1239940:intron 30.0%
AGCGAAAAATTATGTTACCA+GGG - chr8_2:22083408-22083427 Msa1239940:intron 30.0%
! GATTTTGGATACCAAAAACT+TGG - chr8_2:22083435-22083454 Msa1239940:intron 30.0%
!!! TTTTTTGATTTGCACATTGC+AGG - chr8_2:22083676-22083695 Msa1239940:CDS 30.0%
CACATAACACATCATATTGT+TGG - chr8_2:22083910-22083929 Msa1239940:CDS 30.0%
CATTGTCTCCAAAACAATTC+CGG - chr8_2:22080721-22080740 Msa1239940:intron 35.0%
AACCTATGTTTGTGTCTACA+AGG + chr8_2:22080789-22080808 None:intergenic 35.0%
TCCATTTCTGAACTTGTAGA+GGG + chr8_2:22080871-22080890 None:intergenic 35.0%
TTCCATTTCTGAACTTGTAG+AGG + chr8_2:22080872-22080891 None:intergenic 35.0%
CACTGACAAAGATTCAGAAT+TGG + chr8_2:22080905-22080924 None:intergenic 35.0%
GTCAGTGAAACAAGAAGAAA+AGG - chr8_2:22080918-22080937 Msa1239940:intron 35.0%
GGATTTCCAAATGGTTCTTT+AGG - chr8_2:22081024-22081043 Msa1239940:intron 35.0%
TCAACACCTAAAGAACCATT+TGG + chr8_2:22081033-22081052 None:intergenic 35.0%
!! AATGGTTCTTTAGGTGTTGA+AGG - chr8_2:22081033-22081052 Msa1239940:intron 35.0%
!! GTTGAAGGCAATGTTTTTGA+TGG - chr8_2:22081048-22081067 Msa1239940:intron 35.0%
! ACTCTTTTGCCTAATGAGAT+TGG + chr8_2:22081091-22081110 None:intergenic 35.0%
TAATTGGAGAAAAACTCAGC+AGG + chr8_2:22081117-22081136 None:intergenic 35.0%
!! TCCAATTATTCGGTTGATAG+TGG - chr8_2:22081129-22081148 Msa1239940:CDS 35.0%
ACCACTATCAACCGAATAAT+TGG + chr8_2:22081133-22081152 None:intergenic 35.0%
!! ACACTCCAAGATGTTAGTTT+TGG - chr8_2:22081291-22081310 Msa1239940:intron 35.0%
!!! CACTCCAAGATGTTAGTTTT+GGG - chr8_2:22081292-22081311 Msa1239940:intron 35.0%
! GAAAAGACCTGATTTTGTAG+CGG - chr8_2:22081372-22081391 Msa1239940:intron 35.0%
! TGGTTGGTCAATATTGATCA+TGG + chr8_2:22081538-22081557 None:intergenic 35.0%
AACAACTAACAAGCAAGCTT+TGG + chr8_2:22081558-22081577 None:intergenic 35.0%
TATCTTGGACATTATTAGGC+TGG - chr8_2:22081771-22081790 Msa1239940:intron 35.0%
TTATTAGGCTGGAAGAGAAA+AGG - chr8_2:22081782-22081801 Msa1239940:intron 35.0%
TATTAGGCTGGAAGAGAAAA+GGG - chr8_2:22081783-22081802 Msa1239940:intron 35.0%
GGAAGAGAAAAGGGTAAAAA+TGG - chr8_2:22081792-22081811 Msa1239940:intron 35.0%
AAGGGTAAAAATGGGATATC+AGG - chr8_2:22081801-22081820 Msa1239940:intron 35.0%
GAAGGCAGAAAAATTTCATG+TGG - chr8_2:22081840-22081859 Msa1239940:intron 35.0%
ATTTACTTGCCAACACATGA+TGG - chr8_2:22081960-22081979 Msa1239940:intron 35.0%
AATAGAGCTCTTTAGTCCTT+AGG + chr8_2:22082001-22082020 None:intergenic 35.0%
! CTTTAAGAAAAGCTTGGGTT+TGG - chr8_2:22082023-22082042 Msa1239940:CDS 35.0%
GGAGTAGACTCATACATATT+TGG + chr8_2:22082330-22082349 None:intergenic 35.0%
! ACTACATCATCTAGTGGATA+TGG - chr8_2:22082460-22082479 Msa1239940:intron 35.0%
TAGCTTCACCAATGACTATT+GGG - chr8_2:22082627-22082646 Msa1239940:intron 35.0%
! GTTTTCCACTTCAAATGCTT+TGG - chr8_2:22082702-22082721 Msa1239940:intron 35.0%
! AGTTTCCAAAGCATTTGAAG+TGG + chr8_2:22082710-22082729 None:intergenic 35.0%
!! TTCAAATGCTTTGGAAACTC+AGG - chr8_2:22082711-22082730 Msa1239940:intron 35.0%
TGGATCCTAATTTCGAAATC+GGG + chr8_2:22082893-22082912 None:intergenic 35.0%
! TTAGGGGTGAAACTTTTTAG+GGG + chr8_2:22082991-22083010 None:intergenic 35.0%
!! GGCAAAAAGACACCATTTTT+AGG + chr8_2:22083009-22083028 None:intergenic 35.0%
CCCAATTTCGAATCTAAAGA+TGG - chr8_2:22083028-22083047 Msa1239940:intron 35.0%
GCCATCTTTAGATTCGAAAT+TGG + chr8_2:22083032-22083051 None:intergenic 35.0%
GCAACGTTTGCCTAAAAAAA+TGG + chr8_2:22083090-22083109 None:intergenic 35.0%
! GCTACACGAGCAATTTTTAT+TGG + chr8_2:22083357-22083376 None:intergenic 35.0%
! GAGAAGTTTTTACACGTTCA+AGG - chr8_2:22083510-22083529 Msa1239940:intron 35.0%
! CTTTTGGCACGAATTTTACA+TGG + chr8_2:22083543-22083562 None:intergenic 35.0%
TGTAAAATTCGTGCCAAAAG+AGG - chr8_2:22083543-22083562 Msa1239940:intron 35.0%
! AACTTTTACTAAAACCACGG+TGG - chr8_2:22083846-22083865 Msa1239940:CDS 35.0%
! TGTTATGTGCTAGTTTGGAT+TGG + chr8_2:22083899-22083918 None:intergenic 35.0%
TGATGTGTTATGTGCTAGTT+TGG + chr8_2:22083904-22083923 None:intergenic 35.0%
TTGAGTACATTAAAGAGCTC+AGG - chr8_2:22084022-22084041 Msa1239940:CDS 35.0%
CAAGCTTTCAACTACTCTGA+AGG - chr8_2:22080640-22080659 Msa1239940:CDS 40.0%
AAAACAATTCCGGCTTAACG+CGG - chr8_2:22080731-22080750 Msa1239940:intron 40.0%
AGGCTTGTAAGTAATGAGCT+TGG + chr8_2:22080769-22080788 None:intergenic 40.0%
! AGCCTTGTAGACACAAACAT+AGG - chr8_2:22080784-22080803 Msa1239940:intron 40.0%
TCCCTCTACAAGTTCAGAAA+TGG - chr8_2:22080867-22080886 Msa1239940:intron 40.0%
!! GAAAAGGACCCTTTTTCACA+TGG - chr8_2:22080934-22080953 Msa1239940:intron 40.0%
AAATCTATTATCGGGCCACT+CGG - chr8_2:22081265-22081284 Msa1239940:intron 40.0%
TACGCCCAAAACTAACATCT+TGG + chr8_2:22081299-22081318 None:intergenic 40.0%
!!! AGATGTTAGTTTTGGGCGTA+AGG - chr8_2:22081299-22081318 Msa1239940:intron 40.0%
!!! GATGTTAGTTTTGGGCGTAA+GGG - chr8_2:22081300-22081319 Msa1239940:intron 40.0%
TAATCCACCGCTACAAAATC+AGG + chr8_2:22081382-22081401 None:intergenic 40.0%
!! TGATTTTGTAGCGGTGGATT+AGG - chr8_2:22081381-22081400 Msa1239940:intron 40.0%
! ACTAACAAGCAAGCTTTGGT+TGG + chr8_2:22081554-22081573 None:intergenic 40.0%
AATAGTCAACTCTCTCAGCA+AGG + chr8_2:22081696-22081715 None:intergenic 40.0%
TTAATTGTCTATTCACCGGG+AGG + chr8_2:22081750-22081769 None:intergenic 40.0%
CTCTTTAGTCCTTAGGAGTT+AGG + chr8_2:22081994-22082013 None:intergenic 40.0%
CAAGGCCATGTATTGCTAAT+TGG + chr8_2:22082087-22082106 None:intergenic 40.0%
CAATTAGCAATACATGGCCT+TGG - chr8_2:22082085-22082104 Msa1239940:CDS 40.0%
! AGGTTTTGCACCATTAAGAG+AGG - chr8_2:22082414-22082433 Msa1239940:intron 40.0%
TTTGCACCATTAAGAGAGGT+AGG - chr8_2:22082418-22082437 Msa1239940:intron 40.0%
ACACTTCCTACCTCTCTTAA+TGG + chr8_2:22082427-22082446 None:intergenic 40.0%
! AGAGAGGTAGGAAGTGTAAA+TGG - chr8_2:22082430-22082449 Msa1239940:intron 40.0%
CAAGCTACTACATCATCTAG+TGG - chr8_2:22082454-22082473 Msa1239940:intron 40.0%
ATCTTGATAGAGCAAGAGGA+TGG + chr8_2:22082508-22082527 None:intergenic 40.0%
CAATAGTCATTGGTGAAGCT+AGG + chr8_2:22082628-22082647 None:intergenic 40.0%
CTAGCTTCACCAATGACTAT+TGG - chr8_2:22082626-22082645 Msa1239940:intron 40.0%
AGATACAATGACCTCTAAGC+AGG - chr8_2:22082796-22082815 Msa1239940:intron 40.0%
GATACAATGACCTCTAAGCA+GGG - chr8_2:22082797-22082816 Msa1239940:intron 40.0%
GGGGACTAAAATCTTCTTCA+AGG + chr8_2:22082872-22082891 None:intergenic 40.0%
GATCCTAATTTCGAAATCGG+GGG + chr8_2:22082891-22082910 None:intergenic 40.0%
GGATCCTAATTTCGAAATCG+GGG + chr8_2:22082892-22082911 None:intergenic 40.0%
TTAGGCAAACGTTGCCAATT+TGG - chr8_2:22083095-22083114 Msa1239940:intron 40.0%
TAGGCAAACGTTGCCAATTT+GGG - chr8_2:22083096-22083115 Msa1239940:intron 40.0%
! TGTTACCAGGGTGTAGATTT+TGG - chr8_2:22083420-22083439 Msa1239940:intron 40.0%
! GATGGGTCAAACCAAGTTTT+TGG + chr8_2:22083449-22083468 None:intergenic 40.0%
TTCTTCCAAGATGGCTACTA+TGG - chr8_2:22083488-22083507 Msa1239940:intron 40.0%
CCTTATCTGCATTTGGGAAA+AGG + chr8_2:22083745-22083764 None:intergenic 40.0%
! CCTTTTCCCAAATGCAGATA+AGG - chr8_2:22083742-22083761 Msa1239940:CDS 40.0%
! TATGTGCTAGTTTGGATTGG+CGG + chr8_2:22083896-22083915 None:intergenic 40.0%
TGATGATTCTACTTCCCTCT+TGG - chr8_2:22083962-22083981 Msa1239940:CDS 40.0%
AACTAGCACTGCTGATATGT+TGG - chr8_2:22083990-22084009 Msa1239940:CDS 40.0%
AGAGCTCAGGAAACAACTTA+AGG - chr8_2:22084035-22084054 Msa1239940:CDS 40.0%
! GCTTTCAACTACTCTGAAGG+TGG - chr8_2:22080643-22080662 Msa1239940:CDS 45.0%
! GCGTTAAGCCGGAATTGTTT+TGG + chr8_2:22080732-22080751 None:intergenic 45.0%
! AAGACCTGATTTTGTAGCGG+TGG - chr8_2:22081375-22081394 Msa1239940:intron 45.0%
GCAATTGGGAGTGACTTGAA+TGG - chr8_2:22081643-22081662 Msa1239940:intron 45.0%
GACTCAAGACCATCATGTGT+TGG + chr8_2:22081972-22081991 None:intergenic 45.0%
GTCTTGAGTCCTAACTCCTA+AGG - chr8_2:22081982-22082001 Msa1239940:CDS 45.0%
! TAGCAATACATGGCCTTGGT+TGG - chr8_2:22082089-22082108 Msa1239940:CDS 45.0%
TGGCATCTTGATAGAGCAAG+AGG + chr8_2:22082512-22082531 None:intergenic 45.0%
ACCTCTAAGCAGGGTTCTTA+CGG - chr8_2:22082806-22082825 Msa1239940:intron 45.0%
AGTCCCCCGATTTCGAAATT+AGG - chr8_2:22082885-22082904 Msa1239940:intron 45.0%
AGGCAAACGTTGCCAATTTG+GGG - chr8_2:22083097-22083116 Msa1239940:intron 45.0%
GGTATCCAAAATCTACACCC+TGG + chr8_2:22083428-22083447 None:intergenic 45.0%
CTTCTCCATAGTAGCCATCT+TGG + chr8_2:22083496-22083515 None:intergenic 45.0%
AGCATTGCAGAGAGGGTAAA+AGG - chr8_2:22083585-22083604 Msa1239940:CDS 45.0%
AACATTACATTGTGCCACCG+TGG + chr8_2:22083863-22083882 None:intergenic 45.0%
TGAACGATACCGCGTTAAGC+CGG + chr8_2:22080743-22080762 None:intergenic 50.0%
ATCTTGGAGTGTGATCCGAG+TGG + chr8_2:22081283-22081302 None:intergenic 50.0%
ACCGTAAGAACCCTGCTTAG+AGG + chr8_2:22082810-22082829 None:intergenic 50.0%
TCTAAGCAGGGTTCTTACGG+TGG - chr8_2:22082809-22082828 Msa1239940:intron 50.0%
GCTAGGCAGACTCGAATGAT+GGG + chr8_2:22083466-22083485 None:intergenic 50.0%
AGCTAGGCAGACTCGAATGA+TGG + chr8_2:22083467-22083486 None:intergenic 50.0%
! GCCTAGCTCTTCTTCCAAGA+TGG - chr8_2:22083479-22083498 Msa1239940:intron 50.0%
GCCATCTTGGAAGAAGAGCT+AGG + chr8_2:22083483-22083502 None:intergenic 50.0%
! GTGAGTGGCAAAGCCTCTTT+TGG + chr8_2:22083559-22083578 None:intergenic 50.0%
!! TGCAATGCTTCTAGGGTGAG+TGG + chr8_2:22083574-22083593 None:intergenic 50.0%
!! ACCCTAGAAGCATTGCAGAG+AGG - chr8_2:22083577-22083596 Msa1239940:CDS 50.0%
CCCTCTCTGCAATGCTTCTA+GGG + chr8_2:22083581-22083600 None:intergenic 50.0%
!! CCCTAGAAGCATTGCAGAGA+GGG - chr8_2:22083578-22083597 Msa1239940:CDS 50.0%
ACCCTCTCTGCAATGCTTCT+AGG + chr8_2:22083582-22083601 None:intergenic 50.0%
!! GTGCTAGTTTGCTGCCAAGA+GGG + chr8_2:22083979-22083998 None:intergenic 50.0%
!! AGTGCTAGTTTGCTGCCAAG+AGG + chr8_2:22083980-22083999 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 22080622 22084074 22080622 ID=Msa1239940;Name=Msa1239940
chr8_2 mRNA 22080622 22084074 22080622 ID=Msa1239940-mRNA-1;Parent=Msa1239940;Name=Msa1239940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.66|0.25|1|1|1|4|0|367
chr8_2 exon 22083546 22084074 22083546 ID=Msa1239940-mRNA-1:exon:7874;Parent=Msa1239940-mRNA-1
chr8_2 exon 22081964 22082280 22081964 ID=Msa1239940-mRNA-1:exon:7873;Parent=Msa1239940-mRNA-1
chr8_2 exon 22081097 22081267 22081097 ID=Msa1239940-mRNA-1:exon:7872;Parent=Msa1239940-mRNA-1
chr8_2 exon 22080622 22080708 22080622 ID=Msa1239940-mRNA-1:exon:7871;Parent=Msa1239940-mRNA-1
chr8_2 CDS 22083546 22084074 22083546 ID=Msa1239940-mRNA-1:cds;Parent=Msa1239940-mRNA-1
chr8_2 CDS 22081964 22082280 22081964 ID=Msa1239940-mRNA-1:cds;Parent=Msa1239940-mRNA-1
chr8_2 CDS 22081097 22081267 22081097 ID=Msa1239940-mRNA-1:cds;Parent=Msa1239940-mRNA-1
chr8_2 CDS 22080622 22080708 22080622 ID=Msa1239940-mRNA-1:cds;Parent=Msa1239940-mRNA-1
Gene Sequence

>Msa1239940

ATGAGCATTGTGTATACTCAAGCTTTCAACTACTCTGAAGGTGGTTCAATGAAGAACACAGAAATGGATTCAAAATTTGGTTACTCACAAACACAACAACATTGTCTCCAAAACAATTCCGGCTTAACGCGGTATCGTTCAGCTCCAAGCTCATTACTTACAAGCCTTGTAGACACAAACATAGGTTTTTTCAATGATGAAACTTTCAGAAATGATAATCAGCAGCAGCAGCAGCAGCATTATTCTCCCTCTACAAGTTCAGAAATGGAAACCATGTTTACCAATTCTGAATCTTTGTCAGTGAAACAAGAAGAAAAGGACCCTTTTTCACATGGAATACAATACAATGATTACTCTTATGGATCTCAAAATCAGATAAATTACCAAACTCAACATAATCAAGGATTTCCAAATGGTTCTTTAGGTGTTGAAGGCAATGTTTTTGATGGTTCTTCTAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCTCCTGCTGAGTTTTTCTCCAATTATTCGGTTGATAGTGGTTTTGCACCATTAAGAGAGGTAGGAAGTGTAAATGGACAAGCTACTACATCATCTAGTGGATATGGTACTTTGAACTTCTCATCTAGACCATCCTCTTGCTCTATCAAGATGCCACTAATTGTTGAAAATGAACATGAAGCTCTTCAAGCAAATTGTATTAAAAGTAGAAACAAGGGAAATGATAATGGTATCACAAAATGTTACATGCCTAGCTTCACCAATGACTATTGGGATAATTCTACATTCAGTGCTCCAAAAAATGCTACTAATAAGGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGGGTGTAGATTTTGGATACCAAAAACTTGGTTTGACCCATCATTCGAGTCTGCCTAGCTCTTCTTCCAAGATGGCTACTATGGAGAAGTTTTTACACGTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGCAAACTAGCACTGCTGATATGTTGGATGAAGCAGTTGAGTACATTAAAGAGCTCAGGAAACAACTTAAGGTACTAGAGAAATTTTAA

Protein sequence

>Msa1239940

MSIVYTQAFNYSEGGSMKNTEMDSKFGYSQTQQHCLQNNSGLTRYRSAPSSLLTSLVDTNIGFFNDETFRNDNQQQQQQHYSPSTSSEMETMFTNSESLSVKQEEKDPFSHGIQYNDYSYGSQNQINYQTQHNQGFPNGSLGVEGNVFDGSSNNCSNLIRQKSSPAEFFSNYSVDSGFAPLREVGSVNGQATTSSSGYGTLNFSSRPSSCSIKMPLIVENEHEALQANCIKSRNKGNDNGITKCYMPSFTNDYWDNSTFSAPKNATNKGEFMFSTSNALETQGVDFGYQKLGLTHHSSLPSSSSKMATMEKFLHVQGSVPCKIRAKRGFATHPRSIAERQTSTADMLDEAVEYIKELRKQLKVLEKF*