AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0903020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903020 MtrunA17_Chr6g0451281 91.511 589 6 2 1 546 55 642 0.0 1097
Msa0903020 MtrunA17_Chr6g0451291 77.080 589 92 1 1 546 27 615 0.0 950
Msa0903020 MtrunA17_Chr6g0451261 76.014 592 96 2 1 546 323 914 0.0 936
Msa0903020 MtrunA17_Chr8g0392711 58.065 589 189 4 1 543 45 621 0.0 674
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0903020 AT3G01420.1 69.492 590 136 2 1 546 50 639 0.0 854
Msa0903020 AT1G73680.1 59.455 587 191 5 1 543 45 628 0.0 711
Msa0903020 AT1G73680.2 58.221 596 193 7 1 543 45 637 0.0 696
Msa0903020 AT1G73680.3 60.039 518 163 3 69 543 3 519 0.0 640
Msa0903020 AT1G73680.4 60.211 475 145 3 112 543 1 474 0.0 590

Find 139 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGATCAATCACATCCTTTA+AGG 0.112267 6_2:-157949 None:intergenic
CTTCAAGTGCTTTCTCTGTT+TGG 0.185040 6_2:+158006 Msa0903020:CDS
TCATGATACCTATCTCTAAA+TGG 0.192004 6_2:+157212 Msa0903020:CDS
TCCGCTCAATATGGAATTTC+CGG 0.204038 6_2:-156389 None:intergenic
CATTGATGAGATTGTATTCT+TGG 0.207586 6_2:-152705 None:intergenic
GGAATAGGGTTGTGTTTGTT+TGG 0.251666 6_2:-158038 None:intergenic
AAGAAATTCAAGGACACATT+TGG 0.271505 6_2:+156361 Msa0903020:CDS
GAATAGGGTTGTGTTTGTTT+GGG 0.278332 6_2:-158037 None:intergenic
TTCAAGTGCTTTCTCTGTTT+GGG 0.278891 6_2:+158007 Msa0903020:CDS
CTAGGAACACGCAAGTAAAT+TGG 0.282392 6_2:-158059 None:intergenic
CATTGTGTTCTAGAACAAAT+AGG 0.287293 6_2:-155516 None:intergenic
CATTGGTTTGCAACTTCTCT+TGG 0.288806 6_2:-155104 None:intergenic
TGGAAGCAATCAAGAAGTTT+TGG 0.297614 6_2:+155363 Msa0903020:CDS
GAAGATGGAACAGCAATTTC+AGG 0.297628 6_2:+155451 Msa0903020:CDS
GGTAGCCAAGGGTCTTTCTT+TGG 0.298249 6_2:+152823 Msa0903020:CDS
CTTGTGGGGCCCTAGAACTT+TGG 0.301876 6_2:+156909 Msa0903020:CDS
GAACACAACTGAAACCTTAA+AGG 0.315532 6_2:+157935 Msa0903020:CDS
AATTCCTCAGTTAAAGAGTA+TGG 0.325416 6_2:-156448 None:intergenic
GAGGAGCTTGATGTGCTTGT+AGG 0.336400 6_2:+157298 Msa0903020:CDS
AAATCTTCCCATTTAGAGAT+AGG 0.346188 6_2:-157220 None:intergenic
TAGCAAGATATAACCAATTC+AGG 0.346766 6_2:+157179 Msa0903020:CDS
ATATAAATGATGCAGTTTAC+AGG 0.348942 6_2:+157140 Msa0903020:intron
GCCCACAAATCCGCTCAATA+TGG 0.356073 6_2:-156398 None:intergenic
GGCTAATATACTTGGCCATT+AGG 0.361626 6_2:+152671 Msa0903020:CDS
CAGGTGACATTCGTAATAGT+TGG 0.372460 6_2:+155470 Msa0903020:CDS
ATGGATAGTTCCAAAGTTCT+AGG 0.375628 6_2:-156919 None:intergenic
ACACGCAAGTAAATTGGAAT+AGG 0.378099 6_2:-158053 None:intergenic
AGGGATGGAAGTGTCATATA+TGG 0.378363 6_2:+155343 Msa0903020:intron
TCTAGAGAGGAGAACATATA+AGG 0.388770 6_2:+153800 Msa0903020:CDS
GTGGCAACCACCATTGGGTC+TGG 0.393435 6_2:-153771 None:intergenic
TCTTCCTTCTCATGGCATCT+AGG 0.400584 6_2:+157377 Msa0903020:CDS
AGAAATTCAAGGACACATTT+GGG 0.403597 6_2:+156362 Msa0903020:CDS
TTGGAGGCATGCGCGCCAAT+TGG 0.404437 6_2:+155827 Msa0903020:CDS
TGTACGGATGTTTGCATGTC+CGG 0.406257 6_2:-155192 None:intergenic
ACCTCTTTCTTCTGATCCAC+AGG 0.406789 6_2:-152859 None:intergenic
AAGAACTTGAAAGATTTAAG+TGG 0.407097 6_2:-155128 None:intergenic
TGAATAGTCCTCTCCTGAAT+TGG 0.412126 6_2:-157192 None:intergenic
GAGCTCCACAGTCCAATCTA+TGG 0.412136 6_2:-155785 None:intergenic
TATATTAGCCCTAAGAAAAC+AGG 0.412840 6_2:-152658 None:intergenic
TTCACTTTGCAGGAGGTTAG+AGG 0.412981 6_2:+157848 Msa0903020:intron
ACACTGAAAAGGGTTTGAAA+TGG 0.417583 6_2:+157910 Msa0903020:CDS
AAAGTATTGGAAGAGATATA+TGG 0.422632 6_2:+157265 Msa0903020:CDS
TTGAACTCCTATCTCTATCA+AGG 0.422739 6_2:-156858 None:intergenic
TTTCTTAGGGCTAATATACT+TGG 0.423557 6_2:+152663 Msa0903020:CDS
TCCATATTGAGCGGATTTGT+GGG 0.423619 6_2:+156397 Msa0903020:CDS
CATGGCAGAGAAGAAGATAA+AGG 0.425013 6_2:+157324 Msa0903020:CDS
GGATGTTTGCATGTCCGGTC+TGG 0.429303 6_2:-155187 None:intergenic
AAGGACACATTTGGGCATTC+CGG 0.430582 6_2:+156370 Msa0903020:CDS
TGAGGAGACATACACTGAAA+AGG 0.432708 6_2:+157899 Msa0903020:CDS
TTCCATATTGAGCGGATTTG+TGG 0.433190 6_2:+156396 Msa0903020:CDS
TTAATGTGATTGCAGCATCT+TGG 0.433235 6_2:+153838 Msa0903020:CDS
GGAAGATTTAACAGATGATA+AGG 0.434509 6_2:+157234 Msa0903020:CDS
CATGATACCTATCTCTAAAT+GGG 0.437524 6_2:+157213 Msa0903020:CDS
CACTGAAAAGGGTTTGAAAT+GGG 0.443308 6_2:+157911 Msa0903020:CDS
ACACGATTGGATAGATCATA+TGG 0.443336 6_2:+153875 Msa0903020:CDS
AGGTGACATTCGTAATAGTT+GGG 0.444834 6_2:+155471 Msa0903020:CDS
CTAACATAAATTGATTAACT+AGG 0.458079 6_2:-158077 None:intergenic
CTTCCATCAGCAGTTCTGTA+TGG 0.468141 6_2:-152772 None:intergenic
GAGAAGACCTTGATAGAGAT+AGG 0.468557 6_2:+156851 Msa0903020:CDS
GAACAACACCTGTAGGGGTT+AGG 0.472979 6_2:+152731 Msa0903020:CDS
TTATGTTTATGTGTATGTAT+TGG 0.473350 6_2:+158173 Msa0903020:three_prime_UTR
TAAGGAAGTAATCAAAGTAT+TGG 0.476469 6_2:+157252 Msa0903020:CDS
ATTGTGTTCTAGAACAAATA+GGG 0.477551 6_2:-155515 None:intergenic
CAATGGGTCACCAAGCTTGT+GGG 0.479439 6_2:+156894 Msa0903020:CDS
AATAGGGTTGTGTTTGTTTG+GGG 0.481784 6_2:-158036 None:intergenic
TGAAAGATTTAAGTGGGCAT+TGG 0.483896 6_2:-155121 None:intergenic
GAGGAGACATACACTGAAAA+GGG 0.487965 6_2:+157900 Msa0903020:CDS
GAACTTCTTCATAATGAAGA+TGG 0.489125 6_2:+155436 Msa0903020:CDS
AATGAAAATGCTGGTAGCCA+AGG 0.491364 6_2:+152811 Msa0903020:CDS
AAAACTGACACTTTGCTTGG+AGG 0.492735 6_2:+155811 Msa0903020:CDS
CATCCATGTTATGTGGTACT+AGG 0.493504 6_2:-156955 None:intergenic
TTCAATTCATGATACACGAT+TGG 0.494349 6_2:+153862 Msa0903020:CDS
ATGGCAGAGAAGAAGATAAA+GGG 0.494420 6_2:+157325 Msa0903020:CDS
TCAATGGGTCACCAAGCTTG+TGG 0.496325 6_2:+156893 Msa0903020:CDS
TCTTTATCGCTATGCTAGAC+TGG 0.496710 6_2:+155732 Msa0903020:CDS
CACGCAAGTAAATTGGAATA+GGG 0.499528 6_2:-158052 None:intergenic
GACATTCGTAATAGTTGGGC+TGG 0.499613 6_2:+155475 Msa0903020:CDS
AGATCTTCATCTTCCAAGTC+CGG 0.500138 6_2:-155712 None:intergenic
ATAGGGTTGTGTTTGTTTGG+GGG 0.509188 6_2:-158035 None:intergenic
GAATACAATCTCATCAATGT+TGG 0.513749 6_2:+152709 Msa0903020:CDS
GTTCTAGGGCCCCACAAGCT+TGG 0.514270 6_2:-156904 None:intergenic
GTTCTGTATGGAAAATCAGT+AGG 0.514586 6_2:-152760 None:intergenic
AAGACAAAGGAAATCCCAAC+TGG 0.515045 6_2:+155152 Msa0903020:CDS
GGACCTCATAGAAGCCAGTT+GGG 0.518270 6_2:-155166 None:intergenic
ACTCTATTAGAAGGAATATC+CGG 0.521994 6_2:+155693 Msa0903020:intron
TTTCCATACAGAACTGCTGA+TGG 0.525073 6_2:+152769 Msa0903020:CDS
TTTCAAGTTCTTCAAGACAA+AGG 0.527235 6_2:+155139 Msa0903020:CDS
TTAGAAGGAATATCCGGACT+TGG 0.530918 6_2:+155699 Msa0903020:intron
TCACTTTGCAGGAGGTTAGA+GGG 0.531434 6_2:+157849 Msa0903020:intron
AGAACTTGAAAGATTTAAGT+GGG 0.531545 6_2:-155127 None:intergenic
TGATGTGCTTGTAGGTCTCA+TGG 0.533097 6_2:+157306 Msa0903020:CDS
ATGTTGGAACAACACCTGTA+GGG 0.533992 6_2:+152725 Msa0903020:CDS
ATTATTGGGAAAGAAATTCA+AGG 0.534335 6_2:+156351 Msa0903020:CDS
TTGGTGAAGATGTCTCCTAA+TGG 0.538800 6_2:-152686 None:intergenic
GGGTTTGACCTAACCCCTAC+AGG 0.542080 6_2:-152739 None:intergenic
TGCTGTTTGTGATTCTCTCA+AGG 0.545481 6_2:+155537 Msa0903020:CDS
ACTAGGTCTCTGAGCCATGA+TGG 0.548069 6_2:-156938 None:intergenic
TTCTGCCAAAGAAAGACCCT+TGG 0.550903 6_2:-152828 None:intergenic
TCTGTGCCATCCATGTTATG+TGG 0.555452 6_2:-156962 None:intergenic
AATCCCAACTGGCTTCTATG+AGG 0.556947 6_2:+155163 Msa0903020:CDS
AACTTTGGAACTATCCATCA+TGG 0.560304 6_2:+156924 Msa0903020:CDS
GGCTTCTATGAGGTCCAGAC+CGG 0.564906 6_2:+155173 Msa0903020:CDS
AATGTTGGAACAACACCTGT+AGG 0.566767 6_2:+152724 Msa0903020:CDS
TGGACCTCATAGAAGCCAGT+TGG 0.568179 6_2:-155167 None:intergenic
CCTTAAAGGATGTGATTGAT+CGG 0.572764 6_2:+157949 Msa0903020:CDS
ATTCTTACCACCAAGGTGTA+CGG 0.577040 6_2:-155208 None:intergenic
ATGAAAATGCTGGTAGCCAA+GGG 0.583924 6_2:+152812 Msa0903020:CDS
ATGAAGAGAGCAGAAAATCA+TGG 0.584968 6_2:+156421 Msa0903020:CDS
AATGGGTCACCAAGCTTGTG+GGG 0.585071 6_2:+156895 Msa0903020:CDS
TCCGGAAATTCCATATTGAG+CGG 0.585092 6_2:+156388 Msa0903020:CDS
CCCTGTGGATCAGAAGAAAG+AGG 0.587403 6_2:+152858 Msa0903020:CDS
TGGATAGTTCCAAAGTTCTA+GGG 0.588238 6_2:-156918 None:intergenic
TATAAATGATGCAGTTTACA+GGG 0.588921 6_2:+157141 Msa0903020:intron
AGGAGAACATATAAGGACAC+AGG 0.590610 6_2:+153807 Msa0903020:CDS
TGGTAAAATCAAAATATCAA+AGG 0.594234 6_2:+155408 Msa0903020:CDS
TTCTGTATGGAAAATCAGTA+GGG 0.594749 6_2:-152759 None:intergenic
TTTACCTAGATGCCATGAGA+AGG 0.594996 6_2:-157381 None:intergenic
TCATATGGAAGACACTCAGC+AGG 0.595518 6_2:+153890 Msa0903020:CDS
AAAATCAAAATATCAAAGGA+AGG 0.597631 6_2:+155412 Msa0903020:CDS
CAAACATCCGTACACCTTGG+TGG 0.599441 6_2:+155201 Msa0903020:CDS
CACAGAAAGATCTGATCATG+TGG 0.599946 6_2:+156979 Msa0903020:CDS
TAGAAATATTCTTACCACCA+AGG 0.600051 6_2:-155215 None:intergenic
AAAGTGAGGACTTTCAAAGA+TGG 0.602146 6_2:+155388 Msa0903020:CDS
GTTTACAGGGATAGAGAGAG+AGG 0.610226 6_2:+157154 Msa0903020:intron
ATGCAAACATCCGTACACCT+TGG 0.610700 6_2:+155198 Msa0903020:CDS
GATATATGGTGATGATGTTG+AGG 0.614314 6_2:+157279 Msa0903020:CDS
AGACCTAGTACCACATAACA+TGG 0.621860 6_2:+156952 Msa0903020:CDS
CTAGTACCACATAACATGGA+TGG 0.624626 6_2:+156956 Msa0903020:CDS
TGTTGGAACAACACCTGTAG+GGG 0.624930 6_2:+152726 Msa0903020:CDS
TGTTCCATACTCTTTAACTG+AGG 0.627621 6_2:+156444 Msa0903020:CDS
TGGCAGAAACATTCTCCCTG+TGG 0.629915 6_2:+152843 Msa0903020:CDS
CCTCTTTCTTCTGATCCACA+GGG 0.636628 6_2:-152858 None:intergenic
TTTCACAAGCAACTACAATG+AGG 0.638322 6_2:+157881 Msa0903020:CDS
GTTGTTGAAACCAGACCCAA+TGG 0.642194 6_2:+153761 Msa0903020:intron
TTGCCACAAAACTTCTAGAG+AGG 0.661873 6_2:+153787 Msa0903020:CDS
AGATATAACCAATTCAGGAG+AGG 0.663971 6_2:+157184 Msa0903020:CDS
GGAGAACATATAAGGACACA+GGG 0.666023 6_2:+153808 Msa0903020:CDS
GTTGAAACCAGACCCAATGG+TGG 0.738557 6_2:+153764 Msa0903020:CDS
TCACACCATAGATTGGACTG+TGG 0.755338 6_2:+155780 Msa0903020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATAATATAAATAAA+AGG - chr6_2:157441-157460 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr6_2:157728-157747 Msa0903020:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr6_2:157729-157748 Msa0903020:intron 0.0%
!! AAATATTGTTAGTATTATAT+TGG + chr6_2:152967-152986 Msa0903020:intron 10.0%
!!! TATAGTTTATTTTTTTTAAG+GGG - chr6_2:153071-153090 None:intergenic 10.0%
!!! TTTTTGTTTATATTTTATGA+CGG - chr6_2:153102-153121 None:intergenic 10.0%
!! CATAAAATATAAACAAAAAT+TGG + chr6_2:153103-153122 Msa0903020:intron 10.0%
!!! TAAACATTAATTTGAATATT+TGG + chr6_2:153947-153966 Msa0903020:intron 10.0%
!!! TTTTTATTTATATTAGAGAT+CGG - chr6_2:154737-154756 None:intergenic 10.0%
!! ATATAATAATATAAGGTTAT+TGG - chr6_2:154998-155017 None:intergenic 10.0%
!! TAGATATAAAGTTTATTTCA+TGG - chr6_2:153048-153067 None:intergenic 15.0%
!! TTAAAATTTGTCAATTATCT+TGG + chr6_2:154247-154266 Msa0903020:intron 15.0%
!! TAAAATTTGTCAATTATCTT+GGG + chr6_2:154248-154267 Msa0903020:intron 15.0%
!! AATAATGTGTATGAAATTTA+AGG - chr6_2:154329-154348 None:intergenic 15.0%
!! GAGAAATATTAGAAAATTTA+TGG - chr6_2:154444-154463 None:intergenic 15.0%
!!! TTTTTTTGACAAAATATCTT+TGG + chr6_2:154603-154622 Msa0903020:intron 15.0%
!! ATCTCAAAAAAGTTATTAAA+TGG + chr6_2:154966-154985 Msa0903020:intron 15.0%
!! TCTCAAAAAAGTTATTAAAT+GGG + chr6_2:154967-154986 Msa0903020:intron 15.0%
!! ATTTAACCCTAAATTATATA+TGG + chr6_2:155255-155274 Msa0903020:intron 15.0%
!! AATGAAACTATATGATAATA+GGG + chr6_2:155324-155343 Msa0903020:intron 15.0%
!! AATTTCTTGATAAAATCTAA+GGG - chr6_2:156010-156029 None:intergenic 15.0%
!! AAAAAAATTCAAGAATGATA+TGG - chr6_2:156139-156158 None:intergenic 15.0%
!! GAAAATCTTATCTTATATTT+AGG - chr6_2:156629-156648 None:intergenic 15.0%
!!! ATAATAAAATCTCTTTTGTA+TGG + chr6_2:156784-156803 Msa0903020:intron 15.0%
!! ACTTACACATAAAATAAAAA+TGG - chr6_2:157093-157112 None:intergenic 15.0%
!! TAATATTACAATGATAATCA+TGG + chr6_2:157566-157585 Msa0903020:intron 15.0%
!! AAAATTAAAAGTTACACGAT+TGG + chr6_2:152884-152903 Msa0903020:intron 20.0%
!!! ATTTCTCTCTTTGATAATTA+AGG - chr6_2:153497-153516 None:intergenic 20.0%
!!! TTATAGAAGATGTTTTAGTT+AGG + chr6_2:153516-153535 Msa0903020:intron 20.0%
!!! AAACATTAATTTTTGCTACT+TGG + chr6_2:153988-154007 Msa0903020:intron 20.0%
!! TAAGGATGTCTAAATATAAT+TGG - chr6_2:154311-154330 None:intergenic 20.0%
!! TTAGAAAATTTATGGTGATA+AGG - chr6_2:154436-154455 None:intergenic 20.0%
!! TATGAAATTAGAATAACGTT+AGG - chr6_2:154497-154516 None:intergenic 20.0%
!!! TTTCATTTTATATTCGAGAT+CGG + chr6_2:154828-154847 Msa0903020:intron 20.0%
!! TTGAGACCATATATAATTTA+GGG - chr6_2:155264-155283 None:intergenic 20.0%
!! ATTGAGACCATATATAATTT+AGG - chr6_2:155265-155284 None:intergenic 20.0%
!! GAATGAAACTATATGATAAT+AGG + chr6_2:155323-155342 Msa0903020:intron 20.0%
!! TGGTAAAATCAAAATATCAA+AGG + chr6_2:155408-155427 Msa0903020:CDS 20.0%
!! AAAATCAAAATATCAAAGGA+AGG + chr6_2:155412-155431 Msa0903020:CDS 20.0%
!! CAATTTCTTGATAAAATCTA+AGG - chr6_2:156011-156030 None:intergenic 20.0%
!! TATTGCATTAATTTATGTCA+TGG + chr6_2:156299-156318 Msa0903020:intron 20.0%
!!! ACTAAAAGTTCAATTGTTTT+AGG + chr6_2:156323-156342 Msa0903020:intron 20.0%
!! ATTCTTCTCTTATAGTATTT+AGG + chr6_2:156732-156751 Msa0903020:intron 20.0%
!!! TGAAATGGTCTTAAAAATAA+AGG - chr6_2:157042-157061 None:intergenic 20.0%
!!! AGACCATTTCATAATTTTTT+AGG + chr6_2:157051-157070 Msa0903020:intron 20.0%
!!! GACCATTTCATAATTTTTTA+GGG + chr6_2:157052-157071 Msa0903020:intron 20.0%
!! AACCCTAAAAAATTATGAAA+TGG - chr6_2:157057-157076 None:intergenic 20.0%
!! TTAAAGTTCAATCAAATTCA+AGG - chr6_2:157828-157847 None:intergenic 20.0%
!! CTAACATAAATTGATTAACT+AGG - chr6_2:158080-158099 None:intergenic 20.0%
!! TTATGTTTATGTGTATGTAT+TGG + chr6_2:158173-158192 Msa0903020:three_prime_UTR 20.0%
!!! AACATGATTTTATTCTTGAA+AGG - chr6_2:158248-158267 None:intergenic 20.0%
! TGTTAGTATTATATTGGAAG+TGG + chr6_2:152973-152992 Msa0903020:intron 25.0%
! AAATTGGTCAACAAAAGTTA+AGG + chr6_2:153119-153138 Msa0903020:intron 25.0%
! AATTGGTCAACAAAAGTTAA+GGG + chr6_2:153120-153139 Msa0903020:intron 25.0%
!!! ACTCATTTTTGCTTACATTT+TGG + chr6_2:153183-153202 Msa0903020:intron 25.0%
!!! CTCATTTTTGCTTACATTTT+GGG + chr6_2:153184-153203 Msa0903020:intron 25.0%
! ACAAATAAATAGAAGACAAG+CGG + chr6_2:153348-153367 Msa0903020:intron 25.0%
!!! AGAGATGCTACAATTTTTTT+AGG + chr6_2:153400-153419 Msa0903020:intron 25.0%
!! AGGTAATTAATGAACCTTTT+TGG + chr6_2:153536-153555 Msa0903020:intron 25.0%
!! GGTAATTAATGAACCTTTTT+GGG + chr6_2:153537-153556 Msa0903020:intron 25.0%
! TAAAAAAAGCTAACCCAAAA+AGG - chr6_2:153553-153572 None:intergenic 25.0%
!! TATACTCATCATAGTGTTTT+TGG - chr6_2:153669-153688 None:intergenic 25.0%
!! GCATAAACACAATATTTTCT+TGG - chr6_2:153740-153759 None:intergenic 25.0%
! TATAAAATTCGTCTTCTCAT+CGG + chr6_2:154085-154104 Msa0903020:intron 25.0%
! ATATGTCACATCACTAAAAA+TGG + chr6_2:154111-154130 Msa0903020:intron 25.0%
! TGTCTAAATATAATTGGTGA+TGG - chr6_2:154305-154324 None:intergenic 25.0%
!! CACATCATTAACATTTTCTA+AGG + chr6_2:154394-154413 Msa0903020:intron 25.0%
!! AATTTTACACGTCATATCTT+TGG + chr6_2:154573-154592 Msa0903020:intron 25.0%
! AGAACTTGAAAGATTTAAGT+GGG - chr6_2:155130-155149 None:intergenic 25.0%
! AAGAACTTGAAAGATTTAAG+TGG - chr6_2:155131-155150 None:intergenic 25.0%
! AAACTATATGATAATAGGGA+TGG + chr6_2:155328-155347 Msa0903020:intron 25.0%
!!! ATTGTGTTCTAGAACAAATA+GGG - chr6_2:155518-155537 None:intergenic 25.0%
! TGATATTGTACTCTATTAGA+AGG + chr6_2:155684-155703 Msa0903020:intron 25.0%
!! TATTGGCTAACATTAATTTC+AGG - chr6_2:156035-156054 None:intergenic 25.0%
!! AAACTTGCGCATTTTATATT+AGG - chr6_2:156193-156212 None:intergenic 25.0%
!!! AAGTTCAATTGTTTTAGGTA+TGG + chr6_2:156328-156347 Msa0903020:intron 25.0%
!!! TTGTTTTAGGTATGGATTAT+TGG + chr6_2:156336-156355 Msa0903020:intron 25.0%
!!! TGTTTTAGGTATGGATTATT+GGG + chr6_2:156337-156356 Msa0903020:intron 25.0%
! ATTATTGGGAAAGAAATTCA+AGG + chr6_2:156351-156370 Msa0903020:CDS 25.0%
! TTGTCATACTCTTTGATTAA+TGG - chr6_2:156562-156581 None:intergenic 25.0%
!! TCTTTTGTATGGTATTACAT+AGG + chr6_2:156795-156814 Msa0903020:intron 25.0%
! TCAAAAACAATTGGTATCAA+TGG + chr6_2:156877-156896 Msa0903020:CDS 25.0%
! CAAAAACAATTGGTATCAAT+GGG + chr6_2:156878-156897 Msa0903020:CDS 25.0%
!! TATTTTATGTGTAAGTGACA+TGG + chr6_2:157097-157116 Msa0903020:intron 25.0%
! ATATAAATGATGCAGTTTAC+AGG + chr6_2:157140-157159 Msa0903020:intron 25.0%
! TATAAATGATGCAGTTTACA+GGG + chr6_2:157141-157160 Msa0903020:intron 25.0%
! TAAGGAAGTAATCAAAGTAT+TGG + chr6_2:157252-157271 Msa0903020:CDS 25.0%
!!! AAAGTATTGGAAGAGATATA+TGG + chr6_2:157265-157284 Msa0903020:CDS 25.0%
!!! TTTTTTAATCTTCCTTCTCA+TGG + chr6_2:157369-157388 Msa0903020:CDS 25.0%
TATATTAGCCCTAAGAAAAC+AGG - chr6_2:152661-152680 None:intergenic 30.0%
TTTCTTAGGGCTAATATACT+TGG + chr6_2:152663-152682 Msa0903020:CDS 30.0%
CATTGATGAGATTGTATTCT+TGG - chr6_2:152708-152727 None:intergenic 30.0%
GAATACAATCTCATCAATGT+TGG + chr6_2:152709-152728 Msa0903020:CDS 30.0%
TTCTGTATGGAAAATCAGTA+GGG - chr6_2:152762-152781 None:intergenic 30.0%
! GATCCTTTTAATGAAAATGC+TGG + chr6_2:152802-152821 Msa0903020:CDS 30.0%
! CTACCAGCATTTTCATTAAA+AGG - chr6_2:152808-152827 None:intergenic 30.0%
GAGTTAGTAACAATAGTCAA+TGG - chr6_2:153009-153028 None:intergenic 30.0%
TTATTTCATGGCTTAAGTGT+GGG - chr6_2:153036-153055 None:intergenic 30.0%
TTTATTTCATGGCTTAAGTG+TGG - chr6_2:153037-153056 None:intergenic 30.0%
! ATTTTTGCTTACATTTTGGG+CGG + chr6_2:153187-153206 Msa0903020:intron 30.0%
CAAATAAATAGAAGACAAGC+GGG + chr6_2:153349-153368 Msa0903020:intron 30.0%
!!! GATGCTACAATTTTTTTAGG+AGG + chr6_2:153403-153422 Msa0903020:intron 30.0%
! TGTGCTTTTATACTCAACAA+GGG - chr6_2:153578-153597 None:intergenic 30.0%
! TTGTGCTTTTATACTCAACA+AGG - chr6_2:153579-153598 None:intergenic 30.0%
TTCAATTCATGATACACGAT+TGG + chr6_2:153862-153881 Msa0903020:CDS 30.0%
CTAAAAATATTGTCACGTCA+CGG - chr6_2:154023-154042 None:intergenic 30.0%
ATGTGTAGACTTTAACATCT+TGG - chr6_2:154278-154297 None:intergenic 30.0%
!! TTTCAAGTTCTTCAAGACAA+AGG + chr6_2:155139-155158 Msa0903020:CDS 30.0%
TAGAAATATTCTTACCACCA+AGG - chr6_2:155218-155237 None:intergenic 30.0%
CATGTGTAAGTTCAATAAGA+AGG - chr6_2:155294-155313 None:intergenic 30.0%
GAACTTCTTCATAATGAAGA+TGG + chr6_2:155436-155455 Msa0903020:CDS 30.0%
!! CATTGTGTTCTAGAACAAAT+AGG - chr6_2:155519-155538 None:intergenic 30.0%
ACTCTATTAGAAGGAATATC+CGG + chr6_2:155693-155712 Msa0903020:intron 30.0%
CAAAAATTCACACCATAGAT+TGG + chr6_2:155773-155792 Msa0903020:CDS 30.0%
AGAAAGATTCAAGAATGACA+CGG + chr6_2:155973-155992 Msa0903020:intron 30.0%
AAGAAATTCAAGGACACATT+TGG + chr6_2:156361-156380 Msa0903020:CDS 30.0%
AGAAATTCAAGGACACATTT+GGG + chr6_2:156362-156381 Msa0903020:CDS 30.0%
AATTCCTCAGTTAAAGAGTA+TGG - chr6_2:156451-156470 None:intergenic 30.0%
! ATTAATGGTGGAGATTTGTT+AGG - chr6_2:156547-156566 None:intergenic 30.0%
TCATACTCTTTGATTAATGG+TGG - chr6_2:156559-156578 None:intergenic 30.0%
! TCTCTTATAGTATTTAGGAC+CGG + chr6_2:156737-156756 Msa0903020:intron 30.0%
ATTCCTATGAACGATTTGAT+CGG + chr6_2:156818-156837 Msa0903020:intron 30.0%
GATAGGAGTTCAAAAACAAT+TGG + chr6_2:156868-156887 Msa0903020:CDS 30.0%
! TGGTCTTAAAAATAAAGGTG+TGG - chr6_2:157037-157056 None:intergenic 30.0%
TAGCAAGATATAACCAATTC+AGG + chr6_2:157179-157198 Msa0903020:CDS 30.0%
TCATGATACCTATCTCTAAA+TGG + chr6_2:157212-157231 Msa0903020:CDS 30.0%
CATGATACCTATCTCTAAAT+GGG + chr6_2:157213-157232 Msa0903020:CDS 30.0%
AAATCTTCCCATTTAGAGAT+AGG - chr6_2:157223-157242 None:intergenic 30.0%
GGAAGATTTAACAGATGATA+AGG + chr6_2:157234-157253 Msa0903020:CDS 30.0%
TGAACTTTAATTCACTTTGC+AGG + chr6_2:157838-157857 Msa0903020:intron 30.0%
!!! ACCATTTGTGTGTCATTTTT+GGG - chr6_2:157980-157999 None:intergenic 30.0%
!!! AACCATTTGTGTGTCATTTT+TGG - chr6_2:157981-158000 None:intergenic 30.0%
GTTCTGTATGGAAAATCAGT+AGG - chr6_2:152763-152782 None:intergenic 35.0%
TATTTCATGGCTTAAGTGTG+GGG - chr6_2:153035-153054 None:intergenic 35.0%
! TTTTTGCTTACATTTTGGGC+GGG + chr6_2:153188-153207 Msa0903020:intron 35.0%
! GCTAACCTTTTATTCGGTTT+CGG - chr6_2:153642-153661 None:intergenic 35.0%
! GGTGTAGCTAACCTTTTATT+CGG - chr6_2:153648-153667 None:intergenic 35.0%
TCTAGAGAGGAGAACATATA+AGG + chr6_2:153800-153819 Msa0903020:CDS 35.0%
TTAATGTGATTGCAGCATCT+TGG + chr6_2:153838-153857 Msa0903020:CDS 35.0%
ACACGATTGGATAGATCATA+TGG + chr6_2:153875-153894 Msa0903020:CDS 35.0%
TCTGTTATGAATATGTGCTG+CGG + chr6_2:154059-154078 Msa0903020:intron 35.0%
! ACGTTAGGTAGAGACTTTTT+GGG - chr6_2:154482-154501 None:intergenic 35.0%
! AACGTTAGGTAGAGACTTTT+TGG - chr6_2:154483-154502 None:intergenic 35.0%
AAAATACTACTAGTAGTGCC+TGG + chr6_2:154550-154569 Msa0903020:intron 35.0%
GATATGACGTGTAAAATTCC+AGG - chr6_2:154571-154590 None:intergenic 35.0%
TGAAAGATTTAAGTGGGCAT+TGG - chr6_2:155124-155143 None:intergenic 35.0%
! TGGAAGCAATCAAGAAGTTT+TGG + chr6_2:155363-155382 Msa0903020:CDS 35.0%
!!! AAGAAGTTTTGGACAAAGTG+AGG + chr6_2:155374-155393 Msa0903020:CDS 35.0%
AAAGTGAGGACTTTCAAAGA+TGG + chr6_2:155388-155407 Msa0903020:CDS 35.0%
AGGTGACATTCGTAATAGTT+GGG + chr6_2:155471-155490 Msa0903020:CDS 35.0%
!! CAAGCAAAGTGTCAGTTTTT+AGG - chr6_2:155810-155829 None:intergenic 35.0%
CTAAAAACTGACACTTTGCT+TGG + chr6_2:155808-155827 Msa0903020:CDS 35.0%
ATGAAGAGAGCAGAAAATCA+TGG + chr6_2:156421-156440 Msa0903020:CDS 35.0%
TGTTCCATACTCTTTAACTG+AGG + chr6_2:156444-156463 Msa0903020:CDS 35.0%
! TTATAGTATTTAGGACCGGA+GGG + chr6_2:156741-156760 Msa0903020:intron 35.0%
TTGAACTCCTATCTCTATCA+AGG - chr6_2:156861-156880 None:intergenic 35.0%
TGGATAGTTCCAAAGTTCTA+GGG - chr6_2:156921-156940 None:intergenic 35.0%
ATGGATAGTTCCAAAGTTCT+AGG - chr6_2:156922-156941 None:intergenic 35.0%
!! AACTTTGGAACTATCCATCA+TGG + chr6_2:156924-156943 Msa0903020:CDS 35.0%
AGATATAACCAATTCAGGAG+AGG + chr6_2:157184-157203 Msa0903020:CDS 35.0%
! GATATATGGTGATGATGTTG+AGG + chr6_2:157279-157298 Msa0903020:CDS 35.0%
ATGGCAGAGAAGAAGATAAA+GGG + chr6_2:157325-157344 Msa0903020:CDS 35.0%
ACTTTAATTCACTTTGCAGG+AGG + chr6_2:157841-157860 Msa0903020:intron 35.0%
TTTCACAAGCAACTACAATG+AGG + chr6_2:157881-157900 Msa0903020:CDS 35.0%
ACACTGAAAAGGGTTTGAAA+TGG + chr6_2:157910-157929 Msa0903020:CDS 35.0%
! CACTGAAAAGGGTTTGAAAT+GGG + chr6_2:157911-157930 Msa0903020:CDS 35.0%
GAACACAACTGAAACCTTAA+AGG + chr6_2:157935-157954 Msa0903020:CDS 35.0%
CCTTAAAGGATGTGATTGAT+CGG + chr6_2:157949-157968 Msa0903020:CDS 35.0%
ACCCAAAAATGACACACAAA+TGG + chr6_2:157976-157995 Msa0903020:CDS 35.0%
TTCAAGTGCTTTCTCTGTTT+GGG + chr6_2:158007-158026 Msa0903020:CDS 35.0%
AATAGGGTTGTGTTTGTTTG+GGG - chr6_2:158039-158058 None:intergenic 35.0%
GAATAGGGTTGTGTTTGTTT+GGG - chr6_2:158040-158059 None:intergenic 35.0%
CACGCAAGTAAATTGGAATA+GGG - chr6_2:158055-158074 None:intergenic 35.0%
ACACGCAAGTAAATTGGAAT+AGG - chr6_2:158056-158075 None:intergenic 35.0%
GGCTAATATACTTGGCCATT+AGG + chr6_2:152671-152690 Msa0903020:CDS 40.0%
TTGGTGAAGATGTCTCCTAA+TGG - chr6_2:152689-152708 None:intergenic 40.0%
AATGTTGGAACAACACCTGT+AGG + chr6_2:152724-152743 Msa0903020:CDS 40.0%
ATGTTGGAACAACACCTGTA+GGG + chr6_2:152725-152744 Msa0903020:CDS 40.0%
TTTCCATACAGAACTGCTGA+TGG + chr6_2:152769-152788 Msa0903020:CDS 40.0%
AATGAAAATGCTGGTAGCCA+AGG + chr6_2:152811-152830 Msa0903020:CDS 40.0%
ATGAAAATGCTGGTAGCCAA+GGG + chr6_2:152812-152831 Msa0903020:CDS 40.0%
! TTTTGCTTACATTTTGGGCG+GGG + chr6_2:153189-153208 Msa0903020:intron 40.0%
AGTTGCCGAAACCGAATAAA+AGG + chr6_2:153634-153653 Msa0903020:intron 40.0%
! TTGCCACAAAACTTCTAGAG+AGG + chr6_2:153787-153806 Msa0903020:CDS 40.0%
!! TCTCCTCTCTAGAAGTTTTG+TGG - chr6_2:153793-153812 None:intergenic 40.0%
AGGAGAACATATAAGGACAC+AGG + chr6_2:153807-153826 Msa0903020:CDS 40.0%
GGAGAACATATAAGGACACA+GGG + chr6_2:153808-153827 Msa0903020:CDS 40.0%
AAAATTCGTCTTCTCATCGG+TGG + chr6_2:154088-154107 Msa0903020:intron 40.0%
! CGTTAGGTAGAGACTTTTTG+GGG - chr6_2:154481-154500 None:intergenic 40.0%
!! CATTGGTTTGCAACTTCTCT+TGG - chr6_2:155107-155126 None:intergenic 40.0%
AAGACAAAGGAAATCCCAAC+TGG + chr6_2:155152-155171 Msa0903020:CDS 40.0%
ATTCTTACCACCAAGGTGTA+CGG - chr6_2:155211-155230 None:intergenic 40.0%
!! AGGGATGGAAGTGTCATATA+TGG + chr6_2:155343-155362 Msa0903020:intron 40.0%
GAAGATGGAACAGCAATTTC+AGG + chr6_2:155451-155470 Msa0903020:CDS 40.0%
CAGGTGACATTCGTAATAGT+TGG + chr6_2:155470-155489 Msa0903020:CDS 40.0%
! TGCTGTTTGTGATTCTCTCA+AGG + chr6_2:155537-155556 Msa0903020:CDS 40.0%
TTAGAAGGAATATCCGGACT+TGG + chr6_2:155699-155718 Msa0903020:intron 40.0%
AGATCTTCATCTTCCAAGTC+CGG - chr6_2:155715-155734 None:intergenic 40.0%
TCTTTATCGCTATGCTAGAC+TGG + chr6_2:155732-155751 Msa0903020:CDS 40.0%
AAAACTGACACTTTGCTTGG+AGG + chr6_2:155811-155830 Msa0903020:CDS 40.0%
TCGCATGTGTTCTTACCAAT+TGG - chr6_2:155845-155864 None:intergenic 40.0%
CAATAAAATCTCAGCCTGAC+CGG + chr6_2:156050-156069 Msa0903020:intron 40.0%
! GTGGTGGGATTGAAATCTAA+GGG + chr6_2:156102-156121 Msa0903020:intron 40.0%
TCCGGAAATTCCATATTGAG+CGG + chr6_2:156388-156407 Msa0903020:CDS 40.0%
TCCGCTCAATATGGAATTTC+CGG - chr6_2:156392-156411 None:intergenic 40.0%
! TTCCATATTGAGCGGATTTG+TGG + chr6_2:156396-156415 Msa0903020:CDS 40.0%
! TCCATATTGAGCGGATTTGT+GGG + chr6_2:156397-156416 Msa0903020:CDS 40.0%
TCTCTCAAATGCAGGAAATC+AGG - chr6_2:156505-156524 None:intergenic 40.0%
! CTTATAGTATTTAGGACCGG+AGG + chr6_2:156740-156759 Msa0903020:intron 40.0%
AGTCCGATCAAATCGTTCAT+AGG - chr6_2:156824-156843 None:intergenic 40.0%
AACGATTTGATCGGACTACA+AGG + chr6_2:156827-156846 Msa0903020:intron 40.0%
GAGAAGACCTTGATAGAGAT+AGG + chr6_2:156851-156870 Msa0903020:CDS 40.0%
AGACCTAGTACCACATAACA+TGG + chr6_2:156952-156971 Msa0903020:CDS 40.0%
CATCCATGTTATGTGGTACT+AGG - chr6_2:156958-156977 None:intergenic 40.0%
CTAGTACCACATAACATGGA+TGG + chr6_2:156956-156975 Msa0903020:CDS 40.0%
CACAGAAAGATCTGATCATG+TGG + chr6_2:156979-156998 Msa0903020:CDS 40.0%
TGAATAGTCCTCTCCTGAAT+TGG - chr6_2:157195-157214 None:intergenic 40.0%
CATGGCAGAGAAGAAGATAA+AGG + chr6_2:157324-157343 Msa0903020:CDS 40.0%
TTTACCTAGATGCCATGAGA+AGG - chr6_2:157384-157403 None:intergenic 40.0%
TGAGGAGACATACACTGAAA+AGG + chr6_2:157899-157918 Msa0903020:CDS 40.0%
GAGGAGACATACACTGAAAA+GGG + chr6_2:157900-157919 Msa0903020:CDS 40.0%
CCGATCAATCACATCCTTTA+AGG - chr6_2:157952-157971 None:intergenic 40.0%
CTTCAAGTGCTTTCTCTGTT+TGG + chr6_2:158006-158025 Msa0903020:CDS 40.0%
ATAGGGTTGTGTTTGTTTGG+GGG - chr6_2:158038-158057 None:intergenic 40.0%
GGAATAGGGTTGTGTTTGTT+TGG - chr6_2:158041-158060 None:intergenic 40.0%
CTAGGAACACGCAAGTAAAT+TGG - chr6_2:158062-158081 None:intergenic 40.0%
TGTTGGAACAACACCTGTAG+GGG + chr6_2:152726-152745 Msa0903020:CDS 45.0%
CTTCCATCAGCAGTTCTGTA+TGG - chr6_2:152775-152794 None:intergenic 45.0%
TTCTGCCAAAGAAAGACCCT+TGG - chr6_2:152831-152850 None:intergenic 45.0%
CCTCTTTCTTCTGATCCACA+GGG - chr6_2:152861-152880 None:intergenic 45.0%
ACCTCTTTCTTCTGATCCAC+AGG - chr6_2:152862-152881 None:intergenic 45.0%
! TTTGCTTACATTTTGGGCGG+GGG + chr6_2:153190-153209 Msa0903020:intron 45.0%
GTTGTTGAAACCAGACCCAA+TGG + chr6_2:153761-153780 Msa0903020:intron 45.0%
! GTTTTGTGGCAACCACCATT+GGG - chr6_2:153779-153798 None:intergenic 45.0%
!! AGTTTTGTGGCAACCACCAT+TGG - chr6_2:153780-153799 None:intergenic 45.0%
TCATATGGAAGACACTCAGC+AGG + chr6_2:153890-153909 Msa0903020:CDS 45.0%
! AATCCCAACTGGCTTCTATG+AGG + chr6_2:155163-155182 Msa0903020:CDS 45.0%
TGTACGGATGTTTGCATGTC+CGG - chr6_2:155195-155214 None:intergenic 45.0%
ATGCAAACATCCGTACACCT+TGG + chr6_2:155198-155217 Msa0903020:CDS 45.0%
GACATTCGTAATAGTTGGGC+TGG + chr6_2:155475-155494 Msa0903020:CDS 45.0%
TCACACCATAGATTGGACTG+TGG + chr6_2:155780-155799 Msa0903020:CDS 45.0%
! CGGTCAGGCTGAGATTTTAT+TGG - chr6_2:156052-156071 None:intergenic 45.0%
TCAGCCTGACCGGAAATTAT+GGG + chr6_2:156060-156079 Msa0903020:intron 45.0%
!! GGTGGTGGGATTGAAATCTA+AGG + chr6_2:156101-156120 Msa0903020:intron 45.0%
AAGGACACATTTGGGCATTC+CGG + chr6_2:156370-156389 Msa0903020:CDS 45.0%
TCAAATGCAGGAAATCAGGC+AGG - chr6_2:156501-156520 None:intergenic 45.0%
CAGATGTGTCTCTCAAATGC+AGG - chr6_2:156513-156532 None:intergenic 45.0%
CAGAAAGAAGATACTCCCTC+CGG - chr6_2:156759-156778 None:intergenic 45.0%
TCTGTGCCATCCATGTTATG+TGG - chr6_2:156965-156984 None:intergenic 45.0%
GTTTACAGGGATAGAGAGAG+AGG + chr6_2:157154-157173 Msa0903020:intron 45.0%
TGATGTGCTTGTAGGTCTCA+TGG + chr6_2:157306-157325 Msa0903020:CDS 45.0%
TCTTCCTTCTCATGGCATCT+AGG + chr6_2:157377-157396 Msa0903020:CDS 45.0%
TTCACTTTGCAGGAGGTTAG+AGG + chr6_2:157848-157867 Msa0903020:intron 45.0%
TCACTTTGCAGGAGGTTAGA+GGG + chr6_2:157849-157868 Msa0903020:intron 45.0%
!!! ATATAGTTTATTTTTTTTAA+GGG - chr6_2:153072-153091 None:intergenic 5.0%
!!! TATATAGTTTATTTTTTTTA+AGG - chr6_2:153073-153092 None:intergenic 5.0%
!! ATCAAATATATAATAATATA+AGG - chr6_2:155005-155024 None:intergenic 5.0%
!! ATAAAAAAAAAAAAAACTAT+AGG - chr6_2:156276-156295 None:intergenic 5.0%
GAACAACACCTGTAGGGGTT+AGG + chr6_2:152731-152750 Msa0903020:CDS 50.0%
GGTAGCCAAGGGTCTTTCTT+TGG + chr6_2:152823-152842 Msa0903020:CDS 50.0%
TGGCAGAAACATTCTCCCTG+TGG + chr6_2:152843-152862 Msa0903020:CDS 50.0%
CCCTGTGGATCAGAAGAAAG+AGG + chr6_2:152858-152877 Msa0903020:CDS 50.0%
TCATGGCTTAAGTGTGGGGA+GGG - chr6_2:153031-153050 None:intergenic 50.0%
TTCATGGCTTAAGTGTGGGG+AGG - chr6_2:153032-153051 None:intergenic 50.0%
GTTGAAACCAGACCCAATGG+TGG + chr6_2:153764-153783 Msa0903020:CDS 50.0%
GGACCTCATAGAAGCCAGTT+GGG - chr6_2:155169-155188 None:intergenic 50.0%
TGGACCTCATAGAAGCCAGT+TGG - chr6_2:155170-155189 None:intergenic 50.0%
CAAACATCCGTACACCTTGG+TGG + chr6_2:155201-155220 Msa0903020:CDS 50.0%
GAGCTCCACAGTCCAATCTA+TGG - chr6_2:155788-155807 None:intergenic 50.0%
CTCAGCCTGACCGGAAATTA+TGG + chr6_2:156059-156078 Msa0903020:intron 50.0%
CAGCCTGACCGGAAATTATG+GGG + chr6_2:156061-156080 Msa0903020:intron 50.0%
GCCCACAAATCCGCTCAATA+TGG - chr6_2:156401-156420 None:intergenic 50.0%
TCAATGGGTCACCAAGCTTG+TGG + chr6_2:156893-156912 Msa0903020:CDS 50.0%
CAATGGGTCACCAAGCTTGT+GGG + chr6_2:156894-156913 Msa0903020:CDS 50.0%
AATGGGTCACCAAGCTTGTG+GGG + chr6_2:156895-156914 Msa0903020:CDS 50.0%
ACTAGGTCTCTGAGCCATGA+TGG - chr6_2:156941-156960 None:intergenic 50.0%
GAGGAGCTTGATGTGCTTGT+AGG + chr6_2:157298-157317 Msa0903020:CDS 50.0%
GGGTTTGACCTAACCCCTAC+AGG - chr6_2:152742-152761 None:intergenic 55.0%
GGCTTCTATGAGGTCCAGAC+CGG + chr6_2:155173-155192 Msa0903020:CDS 55.0%
GGATGTTTGCATGTCCGGTC+TGG - chr6_2:155190-155209 None:intergenic 55.0%
CCACCCCATAATTTCCGGTC+AGG - chr6_2:156067-156086 None:intergenic 55.0%
CCTGACCGGAAATTATGGGG+TGG + chr6_2:156064-156083 Msa0903020:intron 55.0%
CCGCACCACCCCATAATTTC+CGG - chr6_2:156072-156091 None:intergenic 55.0%
CCGGAAATTATGGGGTGGTG+CGG + chr6_2:156069-156088 Msa0903020:intron 55.0%
ATGGGGTGGTGCGGAAATCA+TGG + chr6_2:156078-156097 Msa0903020:intron 55.0%
TGGGGTGGTGCGGAAATCAT+GGG + chr6_2:156079-156098 Msa0903020:intron 55.0%
TGCGGAAATCATGGGGTGGT+GGG + chr6_2:156087-156106 Msa0903020:intron 55.0%
TGCAGGAAATCAGGCAGGAG+TGG - chr6_2:156496-156515 None:intergenic 55.0%
GAGAGACACATCTGTCTCCC+CGG + chr6_2:156519-156538 Msa0903020:intron 55.0%
AGAGACACATCTGTCTCCCC+GGG + chr6_2:156520-156539 Msa0903020:intron 55.0%
!! TGGAGATTTGTTAGGCCCCG+GGG - chr6_2:156539-156558 None:intergenic 55.0%
!! GTGGAGATTTGTTAGGCCCC+GGG - chr6_2:156540-156559 None:intergenic 55.0%
!! GGTGGAGATTTGTTAGGCCC+CGG - chr6_2:156541-156560 None:intergenic 55.0%
CTTGTGGGGCCCTAGAACTT+TGG + chr6_2:156909-156928 Msa0903020:CDS 55.0%
GTGGCAACCACCATTGGGTC+TGG - chr6_2:153774-153793 None:intergenic 60.0%
! TTGGAGGCATGCGCGCCAAT+TGG + chr6_2:155827-155846 Msa0903020:CDS 60.0%
GGGGTGGTGCGGAAATCATG+GGG + chr6_2:156080-156099 Msa0903020:intron 60.0%
GTGGTGCGGAAATCATGGGG+TGG + chr6_2:156083-156102 Msa0903020:intron 60.0%
GTGCGGAAATCATGGGGTGG+TGG + chr6_2:156086-156105 Msa0903020:intron 60.0%
GAGACACATCTGTCTCCCCG+GGG + chr6_2:156521-156540 Msa0903020:intron 60.0%
!! GTTCTAGGGCCCCACAAGCT+TGG - chr6_2:156907-156926 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 152655 158277 152655 ID=Msa0903020;Name=Msa0903020
chr6_2 mRNA 152655 158277 152655 ID=Msa0903020-mRNA-1;Parent=Msa0903020;Name=Msa0903020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.12|0.11|1|1|1|9|192|546
chr6_2 exon 152655 152879 152655 ID=Msa0903020-mRNA-1:exon:32;Parent=Msa0903020-mRNA-1
chr6_2 exon 153762 153911 153762 ID=Msa0903020-mRNA-1:exon:33;Parent=Msa0903020-mRNA-1
chr6_2 exon 155089 155222 155089 ID=Msa0903020-mRNA-1:exon:34;Parent=Msa0903020-mRNA-1
chr6_2 exon 155345 155558 155345 ID=Msa0903020-mRNA-1:exon:35;Parent=Msa0903020-mRNA-1
chr6_2 exon 155703 155848 155703 ID=Msa0903020-mRNA-1:exon:36;Parent=Msa0903020-mRNA-1
chr6_2 exon 156345 156475 156345 ID=Msa0903020-mRNA-1:exon:37;Parent=Msa0903020-mRNA-1
chr6_2 exon 156849 157019 156849 ID=Msa0903020-mRNA-1:exon:38;Parent=Msa0903020-mRNA-1
chr6_2 exon 157155 157398 157155 ID=Msa0903020-mRNA-1:exon:39;Parent=Msa0903020-mRNA-1
chr6_2 exon 157860 158277 157860 ID=Msa0903020-mRNA-1:exon:40;Parent=Msa0903020-mRNA-1
chr6_2 CDS 152655 152879 152655 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 153762 153911 153762 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 155089 155222 155089 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 155345 155558 155345 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 155703 155848 155703 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 156345 156475 156345 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 156849 157019 156849 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 157155 157398 157155 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 CDS 157860 158085 157860 ID=Msa0903020-mRNA-1:cds;Parent=Msa0903020-mRNA-1
chr6_2 three_prime_UTR 158086 158277 158086 ID=Msa0903020-mRNA-1:three_prime_utr;Parent=Msa0903020-mRNA-1
Gene Sequence

>Msa0903020

ATGCCTGTTTTCTTAGGGCTAATATACTTGGCCATTAGGAGACATCTTCACCAAGAATACAATCTCATCAATGTTGGAACAACACCTGTAGGGGTTAGGTCAAACCCTACTGATTTTCCATACAGAACTGCTGATGGAAGATATAATGATCCTTTTAATGAAAATGCTGGTAGCCAAGGGTCTTTCTTTGGCAGAAACATTCTCCCTGTGGATCAGAAGAAAGAGTTGTTGAAACCAGACCCAATGGTGGTTGCCACAAAACTTCTAGAGAGGAGAACATATAAGGACACAGGGAAGCAATTTAATGTGATTGCAGCATCTTGGATTCAATTCATGATACACGATTGGATAGATCATATGGAAGACACTCAGCAGATTGAACTCATTGCACCAAGAGAAGTTGCAAACCAATGCCCACTTAAATCTTTCAAGTTCTTCAAGACAAAGGAAATCCCAACTGGCTTCTATGAGGTCCAGACCGGACATGCAAACATCCGTACACCTTGGTGGGATGGAAGTGTCATATATGGAAGCAATCAAGAAGTTTTGGACAAAGTGAGGACTTTCAAAGATGGTAAAATCAAAATATCAAAGGAAGGTGAACTTCTTCATAATGAAGATGGAACAGCAATTTCAGGTGACATTCGTAATAGTTGGGCTGGTGTCACAACTTTGCAGACCCTATTTGTTCTAGAACACAATGCTGTTTGTGATTCTCTCAAGAAGGAATATCCGGACTTGGAAGATGAAGATCTTTATCGCTATGCTAGACTGGTAACTTCAGCTGTGATAGCAAAAATTCACACCATAGATTGGACTGTGGAGCTCCTAAAAACTGACACTTTGCTTGGAGGCATGCGCGCCAATTGGTATGGATTATTGGGAAAGAAATTCAAGGACACATTTGGGCATTCCGGAAATTCCATATTGAGCGGATTTGTGGGCATGAAGAGAGCAGAAAATCATGGTGTTCCATACTCTTTAACTGAGGAATTTGCTAGAGAGAAGACCTTGATAGAGATAGGAGTTCAAAAACAATTGGTATCAATGGGTCACCAAGCTTGTGGGGCCCTAGAACTTTGGAACTATCCATCATGGCTCAGAGACCTAGTACCACATAACATGGATGGCACAGAAAGATCTGATCATGTGGACTTAGCTGCTCTTGAAATTTACAGGGATAGAGAGAGAGGTGTAGCAAGATATAACCAATTCAGGAGAGGACTATTCATGATACCTATCTCTAAATGGGAAGATTTAACAGATGATAAGGAAGTAATCAAAGTATTGGAAGAGATATATGGTGATGATGTTGAGGAGCTTGATGTGCTTGTAGGTCTCATGGCAGAGAAGAAGATAAAGGGTTTTGCAATTAGTGAGACAGCTTTTTTAATCTTCCTTCTCATGGCATCTAGGAGGTTAGAGGGTGATAGATTTTTCACAAGCAACTACAATGAGGAGACATACACTGAAAAGGGTTTGAAATGGGTGAACACAACTGAAACCTTAAAGGATGTGATTGATCGGCACTACCCAAAAATGACACACAAATGGTTGAATGCTTCAAGTGCTTTCTCTGTTTGGGATGCACCCCCAAACAAACACAACCCTATTCCAATTTACTTGCGTGTTCCTAGTTAA

Protein sequence

>Msa0903020

MPVFLGLIYLAIRRHLHQEYNLINVGTTPVGVRSNPTDFPYRTADGRYNDPFNENAGSQGSFFGRNILPVDQKKELLKPDPMVVATKLLERRTYKDTGKQFNVIAASWIQFMIHDWIDHMEDTQQIELIAPREVANQCPLKSFKFFKTKEIPTGFYEVQTGHANIRTPWWDGSVIYGSNQEVLDKVRTFKDGKIKISKEGELLHNEDGTAISGDIRNSWAGVTTLQTLFVLEHNAVCDSLKKEYPDLEDEDLYRYARLVTSAVIAKIHTIDWTVELLKTDTLLGGMRANWYGLLGKKFKDTFGHSGNSILSGFVGMKRAENHGVPYSLTEEFAREKTLIEIGVQKQLVSMGHQACGALELWNYPSWLRDLVPHNMDGTERSDHVDLAALEIYRDRERGVARYNQFRRGLFMIPISKWEDLTDDKEVIKVLEEIYGDDVEELDVLVGLMAEKKIKGFAISETAFLIFLLMASRRLEGDRFFTSNYNEETYTEKGLKWVNTTETLKDVIDRHYPKMTHKWLNASSAFSVWDAPPNKHNPIPIYLRVPS*