AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341890 MtrunA17_Chr2g0331691 100.000 209 0 0 1 209 1 209 5.24e-159 437
Msa0341890 MtrunA17_Chr4g0004661 96.098 205 8 0 5 209 59 263 9.71e-151 419
Msa0341890 MtrunA17_Chr4g0034871 85.854 205 28 1 5 209 3 206 2.55e-132 370
Msa0341890 MtrunA17_Chr1g0201121 74.129 201 45 1 6 199 4 204 1.75e-110 315
Msa0341890 MtrunA17_Chr6g0466301 73.529 204 53 1 6 209 4 206 1.78e-110 315
Msa0341890 MtrunA17_Chr6g0465491 73.529 204 53 1 6 209 4 206 1.78e-110 315
Msa0341890 MtrunA17_Chr8g0383261 64.734 207 73 0 1 207 3 209 5.74e-101 291
Msa0341890 MtrunA17_Chr6g0466161 56.284 183 78 2 27 209 7 187 6.95e-69 209
Msa0341890 MtrunA17_Chr6g0465471 56.284 183 78 2 27 209 7 187 1.40e-68 208
Msa0341890 MtrunA17_Chr6g0466431 58.879 107 35 1 6 112 4 101 1.25e-41 136
Msa0341890 MtrunA17_Chr6g0465611 58.879 107 35 1 6 112 4 101 1.25e-41 136
Msa0341890 MtrunA17_Chr2g0276941 36.937 222 116 6 5 209 3 217 1.71e-40 137
Msa0341890 MtrunA17_Chr5g0400131 37.745 204 114 3 12 209 11 207 2.98e-40 136
Msa0341890 MtrunA17_Chr4g0055651 38.308 201 113 5 10 207 8 200 4.69e-40 135
Msa0341890 MtrunA17_Chr2g0276931 36.816 201 117 4 10 207 9 202 1.45e-39 134
Msa0341890 MtrunA17_Chr8g0335471 37.313 201 116 4 10 207 8 201 3.41e-39 133
Msa0341890 MtrunA17_Chr2g0283131 39.086 197 102 6 10 196 13 201 1.47e-38 132
Msa0341890 MtrunA17_Chr7g0250531 37.811 201 114 5 10 207 8 200 1.84e-38 131
Msa0341890 MtrunA17_Chr4g0032201 40.000 165 92 3 10 174 12 169 3.45e-38 131
Msa0341890 MtrunA17_Chr4g0046261 38.071 197 104 6 10 196 13 201 4.97e-38 131
Msa0341890 MtrunA17_Chr4g0040781 41.071 168 91 4 10 176 13 173 8.07e-38 130
Msa0341890 MtrunA17_Chr1g0182321 36.585 205 119 5 10 209 15 213 1.41e-37 130
Msa0341890 MtrunA17_Chr3g0112681 40.000 165 92 3 10 174 12 169 2.01e-37 129
Msa0341890 MtrunA17_Chr1g0182301 36.098 205 120 5 10 209 15 213 4.08e-37 128
Msa0341890 MtrunA17_Chr4g0055081 36.946 203 116 3 12 209 11 206 4.21e-37 128
Msa0341890 MtrunA17_Chr2g0327911 38.378 185 109 4 2 186 7 186 5.86e-37 128
Msa0341890 MtrunA17_Chr3g0123971 37.255 204 114 4 12 209 11 206 7.71e-37 127
Msa0341890 MtrunA17_Chr8g0382221 38.235 204 113 4 12 209 11 207 8.00e-37 127
Msa0341890 MtrunA17_Chr4g0030911 36.585 205 117 5 10 207 15 213 2.05e-36 127
Msa0341890 MtrunA17_Chr1g0212521 35.922 206 118 4 10 207 15 214 5.20e-36 125
Msa0341890 MtrunA17_Chr7g0263071 39.881 168 95 3 10 177 15 176 9.75e-36 125
Msa0341890 MtrunA17_Chr1g0174281 37.037 189 112 3 10 198 15 196 2.82e-35 124
Msa0341890 MtrunA17_Chr7g0214241 36.517 178 106 3 10 187 15 185 5.14e-35 123
Msa0341890 MtrunA17_Chr2g0315551 34.450 209 119 5 10 207 13 214 5.29e-35 123
Msa0341890 MtrunA17_Chr8g0351861 40.741 162 89 3 10 171 16 170 6.97e-35 123
Msa0341890 MtrunA17_Chr2g0325091 39.286 168 94 4 10 176 11 171 2.31e-34 121
Msa0341890 MtrunA17_Chr7g0234201 36.628 172 102 3 10 181 13 177 3.36e-34 121
Msa0341890 MtrunA17_Chr6g0458081 37.209 172 101 3 10 181 6 170 2.46e-33 119
Msa0341890 MtrunA17_Chr2g0319951 38.889 162 92 3 10 171 13 167 3.93e-33 118
Msa0341890 MtrunA17_Chr3g0123821 37.576 165 96 3 10 174 16 173 4.34e-33 118
Msa0341890 MtrunA17_Chr8g0390561 34.783 184 113 3 3 186 2 178 5.12e-33 117
Msa0341890 MtrunA17_Chr6g0482721 39.286 168 94 4 10 176 12 172 7.90e-33 117
Msa0341890 MtrunA17_Chr8g0381841 35.465 172 104 3 3 174 10 174 1.06e-32 117
Msa0341890 MtrunA17_Chr3g0109721 34.595 185 114 3 1 185 1 178 2.25e-32 115
Msa0341890 MtrunA17_Chr7g0231131 38.788 165 94 3 10 174 15 172 2.36e-32 116
Msa0341890 MtrunA17_Chr5g0433561 34.595 185 114 3 1 185 1 178 3.24e-32 115
Msa0341890 MtrunA17_Chr2g0290891 37.654 162 94 3 10 171 6 160 1.49e-31 114
Msa0341890 MtrunA17_Chr1g0189361 36.527 167 99 4 10 176 14 173 2.81e-31 114
Msa0341890 MtrunA17_Chr8g0349711 35.025 197 116 5 7 199 3 191 3.80e-31 113
Msa0341890 MtrunA17_Chr8g0392931 38.889 162 92 3 10 171 14 168 6.27e-31 112
Msa0341890 MtrunA17_Chr7g0275991 37.654 162 94 3 10 171 20 174 8.81e-31 112
Msa0341890 MtrunA17_Chr8g0346421 37.654 162 94 3 10 171 26 180 2.81e-30 111
Msa0341890 MtrunA17_Chr8g0384311 39.024 164 92 5 10 172 13 169 7.02e-30 109
Msa0341890 MtrunA17_Chr8g0349681 39.181 171 93 4 11 177 176 339 1.14e-29 115
Msa0341890 MtrunA17_Chr8g0349681 37.278 169 96 4 3 171 380 538 9.02e-27 107
Msa0341890 MtrunA17_Chr8g0349681 35.503 169 102 4 7 175 10 171 3.22e-26 105
Msa0341890 MtrunA17_Chr1g0199331 34.503 171 104 4 7 176 28 191 7.29e-29 107
Msa0341890 MtrunA17_Chr1g0159481 34.653 202 106 6 10 192 17 211 7.34e-28 104
Msa0341890 MtrunA17_Chr6g0465601 59.211 76 31 0 110 185 3 78 1.60e-27 100
Msa0341890 MtrunA17_Chr7g0265001 38.889 162 92 5 12 172 18 173 2.26e-27 103
Msa0341890 MtrunA17_Chr6g0466421 60.274 73 29 0 113 185 16 88 1.53e-26 97.8
Msa0341890 MtrunA17_Chr1g0197331 37.791 172 99 5 11 180 16 181 1.75e-26 101
Msa0341890 MtrunA17_Chr3g0130271 37.195 164 96 5 10 172 12 169 2.75e-26 100
Msa0341890 MtrunA17_Chr2g0326141 94.118 51 3 0 137 187 305 355 3.53e-26 103
Msa0341890 MtrunA17_Chr1g0180291 38.037 163 93 5 11 172 15 170 3.88e-26 100
Msa0341890 MtrunA17_Chr3g0138121 31.677 161 100 3 11 171 14 164 2.55e-22 90.5
Msa0341890 MtrunA17_Chr3g0138101 31.677 161 100 3 11 171 14 164 2.71e-22 90.5
Msa0341890 MtrunA17_Chr3g0138111 31.677 161 100 3 11 171 14 164 2.80e-22 90.5
Msa0341890 MtrunA17_Chr6g0486041 31.250 208 119 7 10 208 6 198 3.32e-22 89.7
Msa0341890 MtrunA17_Chr2g0325101 30.168 179 110 5 10 179 6 178 6.28e-18 78.2
Msa0341890 MtrunA17_Chr5g0405791 30.168 179 110 6 10 179 6 178 1.76e-17 77.0
Msa0341890 MtrunA17_Chr8g0371501 30.726 179 109 6 10 179 6 178 3.76e-17 76.3
Msa0341890 MtrunA17_Chr3g0117931 30.769 195 117 7 1 186 1 186 4.39e-17 76.3
Msa0341890 MtrunA17_Chr4g0037021 27.957 186 119 4 10 186 6 185 1.28e-16 74.7
Msa0341890 MtrunA17_Chr4g0046211 34.146 123 74 4 10 131 6 122 2.18e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341890 AT1G52280.1 91.262 206 17 1 4 209 2 206 2.81e-142 395
Msa0341890 AT3G16100.1 89.756 205 20 1 5 209 3 206 8.70e-140 389
Msa0341890 AT3G18820.1 88.780 205 22 1 5 209 3 206 1.74e-134 375
Msa0341890 AT1G49300.2 85.854 205 28 1 5 209 3 206 1.03e-130 366
Msa0341890 AT1G49300.1 85.854 205 28 1 5 209 3 206 1.03e-130 366
Msa0341890 AT1G22740.1 73.301 206 49 3 5 209 3 203 1.17e-108 310
Msa0341890 AT4G09720.1 69.231 208 57 2 5 209 3 206 2.05e-106 305
Msa0341890 AT4G09720.3 65.753 219 57 3 5 209 3 217 7.88e-103 296
Msa0341890 AT4G09720.4 67.136 213 58 3 5 209 3 211 8.53e-103 296
Msa0341890 AT2G21880.1 70.556 180 53 0 6 185 5 184 1.43e-93 272
Msa0341890 AT4G09720.6 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0341890 AT4G09720.5 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0341890 AT4G09720.2 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0341890 AT2G21880.2 66.111 180 53 1 6 185 5 176 7.82e-84 247
Msa0341890 AT2G21880.4 70.513 156 46 0 27 182 1 156 3.41e-80 238
Msa0341890 AT2G21880.3 70.513 156 46 0 27 182 1 156 3.41e-80 238
Msa0341890 AT5G39620.1 57.558 172 73 0 11 182 6 177 1.22e-70 214
Msa0341890 AT2G44610.1 38.049 205 113 3 12 209 11 208 5.48e-40 136
Msa0341890 AT1G28550.1 38.384 198 105 5 10 197 13 203 7.70e-40 136
Msa0341890 AT1G09630.1 41.818 165 89 3 10 174 12 169 3.29e-39 134
Msa0341890 AT4G17530.1 38.308 201 113 5 10 207 8 200 6.54e-39 133
Msa0341890 AT5G47200.1 38.308 201 113 5 10 207 8 200 1.05e-38 132
Msa0341890 AT2G33870.1 37.563 197 106 5 10 196 13 202 2.02e-38 132
Msa0341890 AT5G60860.1 39.086 197 102 6 10 196 13 201 3.75e-38 131
Msa0341890 AT3G15060.1 41.975 162 87 3 10 171 13 167 6.16e-38 131
Msa0341890 AT1G02130.1 36.318 201 118 4 10 207 8 201 1.82e-37 129
Msa0341890 AT5G45750.1 36.364 209 114 6 10 207 13 213 2.71e-37 129
Msa0341890 AT5G59840.1 36.893 206 116 5 10 207 15 214 3.18e-37 129
Msa0341890 AT3G53610.2 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0341890 AT3G53610.3 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0341890 AT3G53610.1 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0341890 AT1G05810.1 36.813 182 108 3 6 187 8 182 1.10e-36 128
Msa0341890 AT1G05810.2 36.813 182 108 3 6 187 54 228 2.65e-36 128
Msa0341890 AT3G46060.2 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0341890 AT3G46060.3 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0341890 AT3G46060.1 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0341890 AT5G59150.1 38.182 165 95 3 10 174 12 169 3.49e-36 126
Msa0341890 AT5G64990.1 39.048 210 104 6 12 209 9 206 3.67e-36 126
Msa0341890 AT1G07410.1 38.182 165 95 3 10 174 12 169 9.14e-36 125
Msa0341890 AT3G46830.1 38.788 165 94 3 10 174 12 169 1.09e-35 125
Msa0341890 AT3G46830.2 38.788 165 94 3 10 174 12 169 1.09e-35 125
Msa0341890 AT2G31680.1 35.955 178 107 3 10 187 12 182 1.12e-35 125
Msa0341890 AT3G11730.1 36.139 202 118 4 10 207 8 202 1.25e-35 125
Msa0341890 AT4G18430.1 33.810 210 119 7 10 207 13 214 1.47e-35 125
Msa0341890 AT5G10260.1 36.585 205 115 4 12 209 11 207 3.18e-35 124
Msa0341890 AT3G12160.1 40.606 165 91 3 10 174 15 172 3.88e-35 124
Msa0341890 AT4G18800.1 39.881 168 93 4 10 176 13 173 7.28e-35 123
Msa0341890 AT5G47960.1 34.906 212 117 5 10 207 15 219 1.41e-34 122
Msa0341890 AT2G43130.1 35.955 178 107 3 10 187 12 182 1.91e-34 122
Msa0341890 AT1G06400.1 35.407 209 116 6 10 207 13 213 2.02e-34 122
Msa0341890 AT1G16920.1 39.286 168 94 5 10 176 13 173 3.97e-34 121
Msa0341890 AT4G39890.1 39.634 164 93 2 11 174 10 167 6.37e-34 120
Msa0341890 AT4G35860.1 37.791 172 100 3 10 181 6 170 9.87e-34 120
Msa0341890 AT5G45130.1 34.286 210 123 5 1 207 1 198 1.28e-33 119
Msa0341890 AT4G39990.1 37.576 165 96 3 10 174 17 174 1.32e-33 120
Msa0341890 AT1G18200.1 40.741 162 89 3 10 171 13 167 1.40e-33 120
Msa0341890 AT5G64990.2 37.788 217 104 7 12 209 9 213 1.63e-33 119
Msa0341890 AT5G03520.1 41.071 168 93 3 10 177 15 176 3.69e-33 119
Msa0341890 AT3G07410.1 36.047 172 103 3 10 181 12 176 9.03e-33 117
Msa0341890 AT2G22290.1 35.437 206 116 4 12 209 11 207 1.12e-32 117
Msa0341890 AT5G65270.1 36.364 165 98 3 10 174 17 174 1.76e-32 117
Msa0341890 AT4G19640.1 35.135 185 113 3 1 185 1 178 2.25e-32 116
Msa0341890 AT4G17160.1 38.509 161 92 3 11 171 7 160 2.65e-32 116
Msa0341890 AT3G09900.1 41.667 168 92 4 10 177 15 176 3.28e-32 116
Msa0341890 AT1G73640.1 39.506 162 91 3 10 171 13 167 4.04e-32 116
Msa0341890 AT5G47520.1 36.527 167 99 3 10 176 14 173 7.56e-32 115
Msa0341890 AT4G17170.1 37.654 162 94 3 10 171 6 160 1.57e-31 114
Msa0341890 AT5G45130.2 34.518 197 114 5 14 207 22 206 4.79e-31 113
Msa0341890 AT3G54840.2 35.119 168 101 4 7 173 30 190 9.34e-30 109
Msa0341890 AT1G01200.1 36.420 162 97 2 10 171 28 183 1.10e-29 110
Msa0341890 AT3G54840.1 34.270 178 109 4 7 183 30 200 1.45e-29 109
Msa0341890 AT3G54840.3 34.884 172 104 4 13 183 2 166 7.88e-29 106
Msa0341890 AT1G43890.3 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0341890 AT1G43890.1 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0341890 AT1G43890.2 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0341890 AT5G03530.2 36.082 194 98 7 12 186 15 201 1.55e-27 104
Msa0341890 AT5G03530.1 36.082 194 98 7 12 186 15 201 1.55e-27 104
Msa0341890 AT4G19640.2 36.486 148 89 2 1 148 1 143 1.76e-27 102
Msa0341890 AT4G19640.3 38.168 131 77 1 1 131 1 127 5.29e-26 99.8
Msa0341890 AT5G03520.2 41.667 132 71 3 46 177 41 166 1.01e-24 96.7
Msa0341890 AT5G55190.1 31.677 161 100 3 11 171 14 164 3.44e-22 90.5
Msa0341890 AT5G20010.1 32.530 166 92 5 11 171 14 164 3.70e-22 90.5
Msa0341890 AT5G20020.1 31.677 161 100 3 11 171 14 164 3.94e-22 90.5
Msa0341890 AT3G09910.5 35.465 172 103 5 11 181 14 178 9.49e-22 88.6
Msa0341890 AT3G09910.4 35.465 172 103 5 11 181 14 178 9.49e-22 88.6
Msa0341890 AT5G59150.2 37.398 123 70 3 52 174 3 118 9.93e-22 87.8
Msa0341890 AT3G09910.3 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0341890 AT3G09910.1 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0341890 AT3G09910.2 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0341890 AT4G28950.1 31.068 206 121 7 10 208 6 197 3.14e-21 87.8
Msa0341890 AT4G35860.2 36.923 130 75 3 52 181 2 124 9.37e-21 85.1
Msa0341890 AT5G55080.1 29.814 161 103 3 11 171 14 164 1.04e-20 86.7
Msa0341890 AT5G45970.1 29.444 180 112 5 10 180 6 179 8.01e-18 78.6
Msa0341890 AT5G62880.1 31.746 189 112 6 1 180 1 181 1.96e-17 77.8
Msa0341890 AT3G48040.1 31.746 189 112 6 1 180 1 181 2.53e-17 77.4
Msa0341890 AT4G35020.1 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0341890 AT4G35020.2 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0341890 AT4G35020.3 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0341890 AT1G20090.1 29.050 179 112 5 10 179 5 177 1.58e-16 74.7
Msa0341890 AT2G44690.1 29.651 172 106 5 10 172 18 183 2.05e-16 74.7
Msa0341890 AT1G75840.1 29.050 179 112 5 10 179 6 178 3.07e-16 73.9
Msa0341890 AT3G51300.1 29.609 179 111 5 10 179 6 178 3.65e-16 73.9
Msa0341890 AT2G17800.2 29.050 179 112 5 10 179 6 178 1.93e-15 72.0
Msa0341890 AT2G17800.1 29.050 179 112 5 10 179 6 178 1.93e-15 72.0
Msa0341890 AT4G35950.1 29.050 179 112 5 10 179 6 178 2.50e-15 71.6
Msa0341890 AT5G62880.2 35.606 132 76 5 1 131 1 124 3.75e-15 71.2
Msa0341890 AT3G48040.2 35.606 132 76 5 1 131 1 124 1.05e-14 69.7
Msa0341890 AT5G09910.1 26.012 173 99 5 11 156 23 193 3.89e-13 67.4
Msa0341890 AT5G09910.4 26.012 173 99 5 11 156 23 193 3.89e-13 67.4
Msa0341890 AT4G35020.4 33.058 121 74 4 10 129 6 120 7.61e-13 63.9
Msa0341890 AT4G35020.5 33.058 121 74 4 10 129 6 120 7.61e-13 63.9
Msa0341890 AT5G64813.1 25.758 198 109 7 11 173 23 217 4.93e-12 64.3
Msa0341890 AT5G64813.3 25.758 198 109 7 11 173 23 217 4.93e-12 64.3
Msa0341890 AT5G64813.2 25.758 198 109 7 11 173 23 217 4.93e-12 64.3

Find 74 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCGACATCAATTGTTTC+TGG 0.232108 2_4:-63824316 None:intergenic
ATTTGAAGGATGCAGTATTT+TGG 0.252931 2_4:-63824421 None:intergenic
GTAATACTAATACATATATA+TGG 0.256785 2_4:-63824606 None:intergenic
AAAACTCACAATTCTTCTTC+AGG 0.319718 2_4:-63823959 None:intergenic
GCGAGAAGAGTTCCTTATTC+AGG 0.320875 2_4:+63823492 Msa0341890:CDS
TTGTTTCCCAACACCACAAA+TGG 0.348208 2_4:-63823629 None:intergenic
AAATACTGCATCCTTCAAAT+TGG 0.358102 2_4:+63824424 Msa0341890:three_prime_UTR
ACTCTTCTCGCCAGTGGTTA+AGG 0.372983 2_4:-63823480 None:intergenic
TCCTGAAAACTTCCCATTTG+TGG 0.376974 2_4:+63823616 Msa0341890:CDS
AGACAGGTTGTTCACATTGC+AGG 0.381648 2_4:+63822050 Msa0341890:CDS
AAAGTTTAGTAATCAGTATA+AGG 0.387117 2_4:+63821984 Msa0341890:CDS
TTTGCAGAGGTCTCAAAGTA+TGG 0.397953 2_4:-63823875 None:intergenic
AACTTCCCATTTGTGGTGTT+GGG 0.400986 2_4:+63823623 Msa0341890:CDS
GAGAGTCGTGTTGTAATTGT+TGG 0.411806 2_4:+63819569 Msa0341890:five_prime_UTR
GTCTTCAACTTGAACTTCCT+TGG 0.413731 2_4:-63822031 None:intergenic
GTCATCATCCTCGGTGATAG+TGG 0.414536 2_4:+63821735 Msa0341890:CDS
GTCAGCTTCACATGCAAGAT+TGG 0.428919 2_4:+63824396 Msa0341890:three_prime_UTR
GGACGGCAACAGAGGTCAAC+AGG 0.434788 2_4:+63824343 Msa0341890:CDS
ACAATTGATGTCGGTGGCGG+TGG 0.446109 2_4:+63824322 Msa0341890:CDS
CAACTTGAACTTCCTTGGTA+AGG 0.448202 2_4:-63822026 None:intergenic
AAAGGCATGGTGTGCTTCCA+AGG 0.464084 2_4:+63823844 Msa0341890:CDS
GATCTGGGATACTGCTGGTC+AGG 0.467671 2_4:+63823366 Msa0341890:intron
TAATACTAATACATATATAT+GGG 0.473672 2_4:-63824605 None:intergenic
CAGGAGAGGTTTCAAAGTCT+TGG 0.475629 2_4:+63823385 Msa0341890:CDS
GATCCATGGCTTCTCATTCT+CGG 0.478124 2_4:+63821694 Msa0341890:exon
TCCTTCTTGTGTCTCTCTAG+TGG 0.493505 2_4:+63824492 Msa0341890:three_prime_UTR
AAACTTCCCATTTGTGGTGT+TGG 0.495054 2_4:+63823622 Msa0341890:CDS
AGAATGTAGCACCAATTTGA+AGG 0.498460 2_4:-63824435 None:intergenic
AGAGTCGTGTTGTAATTGTT+GGG 0.500988 2_4:+63819570 Msa0341890:five_prime_UTR
AGAGTTTCAATTCCGATCCA+TGG 0.502727 2_4:+63821680 Msa0341890:exon
GGAAACAAAGTAGATGTTGA+TGG 0.512592 2_4:+63823644 Msa0341890:CDS
CTTTGAGACCTCTGCAAAGG+AGG 0.516360 2_4:+63823880 Msa0341890:CDS
AAAGTATGGTATATTCCCCT+TGG 0.522925 2_4:-63823861 None:intergenic
AGGAAGTTCAAGTTGAAGAC+AGG 0.529226 2_4:+63822034 Msa0341890:CDS
TGTTTCCCAACACCACAAAT+GGG 0.537488 2_4:-63823628 None:intergenic
GTAACATTAAGTAAACAAAC+AGG 0.539021 2_4:-63824527 None:intergenic
TTGATGTCGGTGGCGGTGGA+CGG 0.543988 2_4:+63824326 Msa0341890:CDS
AGGAGAGGAGAGGAGAGGAG+AGG 0.549486 2_4:+63819547 Msa0341890:five_prime_UTR
GCGCCGAGAATGAGAAGCCA+TGG 0.554725 2_4:-63821697 None:intergenic
ATGCAGATCTGGGATACTGC+TGG 0.566605 2_4:+63823361 Msa0341890:intron
GAAACAATTGATGTCGGTGG+CGG 0.576334 2_4:+63824319 Msa0341890:CDS
GAGGTTTCAAAGTCTTGGTG+TGG 0.576541 2_4:+63823390 Msa0341890:CDS
CTTGGTGTGGCTTTCTACCG+AGG 0.578330 2_4:+63823403 Msa0341890:CDS
AATCAGTATAAGGCTACCAT+TGG 0.580849 2_4:+63821994 Msa0341890:CDS
TTTGAGACCTCTGCAAAGGA+GGG 0.585589 2_4:+63823881 Msa0341890:CDS
AAGGCATGGTGTGCTTCCAA+GGG 0.586547 2_4:+63823845 Msa0341890:CDS
GGTAAGGAAATCAGCACCAA+TGG 0.599639 2_4:-63822010 None:intergenic
GAGAATGAGAAGCCATGGAT+CGG 0.602085 2_4:-63821692 None:intergenic
AACAAAGTAGATGTTGATGG+TGG 0.603728 2_4:+63823647 Msa0341890:CDS
CAAGAAGGACAAGTTGTCCC+AGG 0.605582 2_4:-63824478 None:intergenic
GTGGCGGTGGACGGCAACAG+AGG 0.605632 2_4:+63824335 Msa0341890:CDS
CTGAGAAGAAAGCAAAGGCA+TGG 0.611252 2_4:+63823831 Msa0341890:CDS
TAAGGAACTCTTCTCGCCAG+TGG 0.617763 2_4:-63823486 None:intergenic
TCATCATCCTCGGTGATAGT+GGG 0.618638 2_4:+63821736 Msa0341890:CDS
GCCACTAGAGAGACACAAGA+AGG 0.622609 2_4:-63824493 None:intergenic
TTATTGAAAGTCATCATCCT+CGG 0.622878 2_4:+63821726 Msa0341890:CDS
ATATGAGCGAGTCAGAAGAC+AGG 0.625691 2_4:-63821591 None:intergenic
CCAGAAACAATTGATGTCGG+TGG 0.629506 2_4:+63824316 Msa0341890:CDS
GGGATACTGCTGGTCAGGAG+AGG 0.630015 2_4:+63823371 Msa0341890:CDS
TGGTGCTGATTTCCTTACCA+AGG 0.632236 2_4:+63822014 Msa0341890:CDS
TGAGCGAGTCAGAAGACAGG+TGG 0.634959 2_4:-63821588 None:intergenic
GGTTTCTGAGAAGAAAGCAA+AGG 0.639361 2_4:+63823826 Msa0341890:intron
ATCGTGTAACACGAGAGGAG+AGG 0.642516 2_4:+63819532 Msa0341890:five_prime_UTR
ATTAAAACCCTCCTTTGCAG+AGG 0.646100 2_4:-63823888 None:intergenic
ATACTTTGAGACCTCTGCAA+AGG 0.653339 2_4:+63823877 Msa0341890:CDS
ATGCCAGAAACAATTGATGT+CGG 0.654391 2_4:+63824313 Msa0341890:CDS
ACGAGAGGAGAGGAGAGGAG+AGG 0.662826 2_4:+63819542 Msa0341890:five_prime_UTR
GAGGTATCGTGTAACACGAG+AGG 0.670439 2_4:+63819527 Msa0341890:five_prime_UTR
TGACATTTACATCATAAACA+AGG 0.673979 2_4:-63823441 None:intergenic
GTAACACGAGAGGAGAGGAG+AGG 0.689682 2_4:+63819537 Msa0341890:five_prime_UTR
TGATGACTTTCAATAACATG+CGG 0.690006 2_4:-63821719 None:intergenic
GGACACAGCAATCTGCACCT+CGG 0.707086 2_4:-63823420 None:intergenic
AGGCATGGTGTGCTTCCAAG+GGG 0.713588 2_4:+63823846 Msa0341890:CDS
TTATATACCCACTATCACCG+AGG 0.799645 2_4:-63821743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGAAATTGAAAAATAA+TGG - chr2_4:63819648-63819667 None:intergenic 10.0%
!!! AACTTAAATATTTTAAAAGA+GGG - chr2_4:63820743-63820762 None:intergenic 10.0%
!!! AAACTTAAATATTTTAAAAG+AGG - chr2_4:63820744-63820763 None:intergenic 10.0%
!! TCATAAAAAGAAAAATTATT+AGG + chr2_4:63820963-63820982 Msa0341890:intron 10.0%
!!! TTTGATATTCTATATTTTTT+TGG - chr2_4:63821296-63821315 None:intergenic 10.0%
!! AACAATAAATAAATAATTGA+AGG + chr2_4:63823004-63823023 Msa0341890:intron 10.0%
!! TATTTACTTATGAAAAATAA+GGG - chr2_4:63824554-63824573 None:intergenic 10.0%
!! ATATTTACTTATGAAAAATA+AGG - chr2_4:63824555-63824574 None:intergenic 10.0%
!! TAATACTAATACATATATAT+GGG - chr2_4:63824608-63824627 None:intergenic 10.0%
!!! TTTATTTTTGTTTTGTTTCA+TGG + chr2_4:63819949-63819968 Msa0341890:intron 15.0%
!!! TTAAAAGATTTTATCCTTTA+TGG + chr2_4:63820182-63820201 Msa0341890:intron 15.0%
!!! TTCTTTCTCTTTTTAATTTA+AGG + chr2_4:63820608-63820627 Msa0341890:intron 15.0%
!!! TCTTTCTCTTTTTAATTTAA+GGG + chr2_4:63820609-63820628 Msa0341890:intron 15.0%
!!! GTGAAAATTGAAAATTTTAT+AGG - chr2_4:63820713-63820732 None:intergenic 15.0%
!!! AAATTTTCAATTTTCACTTT+TGG + chr2_4:63820716-63820735 Msa0341890:intron 15.0%
!! TTTGACTAATCTTAAAAAAA+AGG - chr2_4:63820909-63820928 None:intergenic 15.0%
!!! ATTATTTTCATAACCTATAA+AGG - chr2_4:63821183-63821202 None:intergenic 15.0%
!! TAGGTTATGAAAATAATTTA+CGG + chr2_4:63821186-63821205 Msa0341890:intron 15.0%
!! ATTAAGTGTAAACAATAAAA+AGG - chr2_4:63821327-63821346 None:intergenic 15.0%
!! TGAAAGAAAATTTAAATGAA+TGG + chr2_4:63821440-63821459 Msa0341890:intron 15.0%
!! TTCATATTGTATACATAATT+AGG - chr2_4:63823244-63823263 None:intergenic 15.0%
!! AATTATGTATACAATATGAA+AGG + chr2_4:63823244-63823263 Msa0341890:intron 15.0%
!! ATTATGTATACAATATGAAA+GGG + chr2_4:63823245-63823264 Msa0341890:intron 15.0%
!!! CAAAAAAAAAAAAGTTTTGT+TGG + chr2_4:63824046-63824065 Msa0341890:intron 15.0%
!! ATTTACTTATGAAAAATAAG+GGG - chr2_4:63824553-63824572 None:intergenic 15.0%
!! GTAATACTAATACATATATA+TGG - chr2_4:63824609-63824628 None:intergenic 15.0%
!!! TAAATTTTTGAGAATGAAAG+AGG + chr2_4:63819508-63819527 Msa0341890:five_prime_UTR 20.0%
!! ATGTGTCTCATATTATATTT+AGG + chr2_4:63819756-63819775 Msa0341890:intron 20.0%
!!! GTTTTTTGGATTGAAAATAT+GGG + chr2_4:63820030-63820049 Msa0341890:intron 20.0%
!!! TTAAGGGTTAAATATGTTTT+TGG + chr2_4:63820625-63820644 Msa0341890:intron 20.0%
!! GAAAAGTTGACATATTTATA+AGG - chr2_4:63820652-63820671 None:intergenic 20.0%
!!! TAAAAGTTGAAGGAAAATTT+TGG - chr2_4:63820687-63820706 None:intergenic 20.0%
!! TTATAGGAATTAAAAGTTGA+AGG - chr2_4:63820697-63820716 None:intergenic 20.0%
!!! TTTAATTTGAATTGTAACTC+AGG - chr2_4:63821031-63821050 None:intergenic 20.0%
!!! ATTAGTAATTTAAGTCTTGT+TGG + chr2_4:63821056-63821075 Msa0341890:intron 20.0%
!! CGAAACTAAATATAATGAAA+AGG - chr2_4:63821225-63821244 None:intergenic 20.0%
!! TAAAATAAGCCATTCAAATT+GGG - chr2_4:63821402-63821421 None:intergenic 20.0%
!! TTAAAATAAGCCATTCAAAT+TGG - chr2_4:63821403-63821422 None:intergenic 20.0%
!! GATTAAATTAATGTTCGATT+CGG + chr2_4:63821845-63821864 Msa0341890:intron 20.0%
!!! TTTTTTTTTATTTGTTTGGC+AGG + chr2_4:63821923-63821942 Msa0341890:intron 20.0%
!!! TTTTTTTTATTTGTTTGGCA+GGG + chr2_4:63821924-63821943 Msa0341890:intron 20.0%
!! AAAGTTTAGTAATCAGTATA+AGG + chr2_4:63821984-63822003 Msa0341890:CDS 20.0%
!!! ATATATTTTGACATTGAGAA+TGG - chr2_4:63822440-63822459 None:intergenic 20.0%
!! CTACATGTTAAATGTTAATA+GGG - chr2_4:63822469-63822488 None:intergenic 20.0%
!!! ATTACTATCAGCTTTTAAAT+AGG - chr2_4:63822555-63822574 None:intergenic 20.0%
!!! AGACCATTTTATTGATTAAA+TGG + chr2_4:63823209-63823228 Msa0341890:intron 20.0%
!! GATCCATTTAATCAATAAAA+TGG - chr2_4:63823215-63823234 None:intergenic 20.0%
!! ATCTTAACACAATTTCTAAA+GGG + chr2_4:63823541-63823560 Msa0341890:intron 20.0%
!!! ACCTAATTGATTTGATTTTT+AGG + chr2_4:63823580-63823599 Msa0341890:intron 20.0%
!!! GAATTCTGAAAAATAATTTG+AGG - chr2_4:63823701-63823720 None:intergenic 20.0%
!!! AAAAAAAAAGTTTTGTTGGT+AGG + chr2_4:63824050-63824069 Msa0341890:intron 20.0%
!!! AGGATTTAGAATATTAAAGA+TGG + chr2_4:63824070-63824089 Msa0341890:intron 20.0%
!!! TTTAGAATATTAAAGATGGT+AGG + chr2_4:63824074-63824093 Msa0341890:intron 20.0%
!! TTAGAATATTAAAGATGGTA+GGG + chr2_4:63824075-63824094 Msa0341890:intron 20.0%
!!! AATCTTATTTTAAGATAGAG+TGG + chr2_4:63824116-63824135 Msa0341890:intron 20.0%
!! TTTACTTATGAAAAATAAGG+GGG - chr2_4:63824552-63824571 None:intergenic 20.0%
! CGGACATATTTAAAAATTCA+CGG - chr2_4:63819708-63819727 None:intergenic 25.0%
!!! GGTTATAAGTTAGTTTTTTG+TGG + chr2_4:63819857-63819876 Msa0341890:intron 25.0%
!!! TATAAGTTAGTTTTTTGTGG+TGG + chr2_4:63819860-63819879 Msa0341890:intron 25.0%
!!! AAATCTTGAATCTGGTTTTT+TGG + chr2_4:63820016-63820035 Msa0341890:intron 25.0%
!!! GGTTTTTTGGATTGAAAATA+TGG + chr2_4:63820029-63820048 Msa0341890:intron 25.0%
! ATGACTTACTAATACTTTGA+AGG + chr2_4:63820347-63820366 Msa0341890:intron 25.0%
! TGACTTACTAATACTTTGAA+GGG + chr2_4:63820348-63820367 Msa0341890:intron 25.0%
! TAAGCATTTAAATAGACGTA+TGG - chr2_4:63820414-63820433 None:intergenic 25.0%
!! CATTTTTGTACTGAATTGTT+GGG + chr2_4:63820535-63820554 Msa0341890:intron 25.0%
! GTGTAAAATTATTTACTGGT+TGG - chr2_4:63820874-63820893 None:intergenic 25.0%
! TCGAGTGTAAAATTATTTAC+TGG - chr2_4:63820878-63820897 None:intergenic 25.0%
! GACAATTTATTACCAATTAC+AGG + chr2_4:63821001-63821020 Msa0341890:intron 25.0%
! AAAAACAATCAGTCCTTTAT+AGG + chr2_4:63821167-63821186 Msa0341890:intron 25.0%
! ATAATTTACGGCAAAACAAT+TGG + chr2_4:63821198-63821217 Msa0341890:intron 25.0%
! TTTGAACATTCTCAAATGAT+AGG + chr2_4:63821533-63821552 Msa0341890:intron 25.0%
! ATCAGAAGAATCAATCAATT+TGG - chr2_4:63821630-63821649 None:intergenic 25.0%
! AGTTGAAATTGAAAAGAAGA+AGG - chr2_4:63821793-63821812 None:intergenic 25.0%
! TTTCAACTATCACATGTTAA+AGG + chr2_4:63821805-63821824 Msa0341890:intron 25.0%
! TTCAACTATCACATGTTAAA+GGG + chr2_4:63821806-63821825 Msa0341890:intron 25.0%
! GCTACATGTTAAATGTTAAT+AGG - chr2_4:63822470-63822489 None:intergenic 25.0%
! TGATATTCTGACATCAATTT+GGG - chr2_4:63822507-63822526 None:intergenic 25.0%
! AGTTTATACCCAAAAAAACA+GGG - chr2_4:63822595-63822614 None:intergenic 25.0%
! TAGTTTATACCCAAAAAAAC+AGG - chr2_4:63822596-63822615 None:intergenic 25.0%
!! CTTTTGTCTAAGAAAGATAA+AGG - chr2_4:63822809-63822828 None:intergenic 25.0%
!! TATCAAAAAACAAAGTGTCA+TGG - chr2_4:63823063-63823082 None:intergenic 25.0%
!! AAATTCATGTTTCTTTTTCC+TGG + chr2_4:63823157-63823176 Msa0341890:intron 25.0%
! TGACATTTACATCATAAACA+AGG - chr2_4:63823444-63823463 None:intergenic 25.0%
! GAATAAAAATCACCTGAATA+AGG - chr2_4:63823507-63823526 None:intergenic 25.0%
!! TTCAGGTGATTTTTATTCTT+TGG + chr2_4:63823509-63823528 Msa0341890:intron 25.0%
! GATCTTAACACAATTTCTAA+AGG + chr2_4:63823540-63823559 Msa0341890:intron 25.0%
! GCCTAAAAATCAAATCAATT+AGG - chr2_4:63823584-63823603 None:intergenic 25.0%
! GTGATAAATAACTTACAACT+CGG - chr2_4:63823679-63823698 None:intergenic 25.0%
!! TTTGATTTACCATATGTTCA+CGG + chr2_4:63823762-63823781 Msa0341890:intron 25.0%
! AAAGAGCAAAACTTCTTAAA+TGG - chr2_4:63824026-63824045 None:intergenic 25.0%
! TAGAATATTAAAGATGGTAG+GGG + chr2_4:63824076-63824095 Msa0341890:intron 25.0%
! AGTTATACATTCATTCATAG+TGG - chr2_4:63824181-63824200 None:intergenic 25.0%
!!! GTATAACTTGCTATTTCAAT+TGG + chr2_4:63824193-63824212 Msa0341890:intron 25.0%
! AGGATCAAACAAAATATCTA+TGG - chr2_4:63824271-63824290 None:intergenic 25.0%
!!! ATAGATATTTTGTTTGATCC+TGG + chr2_4:63824270-63824289 Msa0341890:intron 25.0%
! GTAACATTAAGTAAACAAAC+AGG - chr2_4:63824530-63824549 None:intergenic 25.0%
TCATTGTGGCAAAAAAGATA+CGG - chr2_4:63819728-63819747 None:intergenic 30.0%
ACACATATTTGTCATCATTG+TGG - chr2_4:63819742-63819761 None:intergenic 30.0%
! TGACAAATATGTCCGTATTT+TGG + chr2_4:63819787-63819806 Msa0341890:intron 30.0%
CGTTGAAAGAAACCAAAATA+CGG - chr2_4:63819802-63819821 None:intergenic 30.0%
!! AAATCATGAGTTTTTCGATC+TGG + chr2_4:63819891-63819910 Msa0341890:intron 30.0%
ATATCTTGATGTTGCTCTAA+AGG + chr2_4:63820110-63820129 Msa0341890:intron 30.0%
! TATCTTGATGTTGCTCTAAA+GGG + chr2_4:63820111-63820130 Msa0341890:intron 30.0%
CCAACAATTCAGTACAAAAA+TGG - chr2_4:63820537-63820556 None:intergenic 30.0%
!! CCATTTTTGTACTGAATTGT+TGG + chr2_4:63820534-63820553 Msa0341890:intron 30.0%
! AGTTGAAGGAAAATTTTGGA+GGG - chr2_4:63820683-63820702 None:intergenic 30.0%
! AAGTTGAAGGAAAATTTTGG+AGG - chr2_4:63820684-63820703 None:intergenic 30.0%
CATTTATAATATCGCGAGAA+AGG + chr2_4:63820817-63820836 Msa0341890:intron 30.0%
!! TTAAGTCTTGTTGGCTAAAA+AGG + chr2_4:63821065-63821084 Msa0341890:intron 30.0%
ATAAGTCAACCCAATTTGAA+TGG + chr2_4:63821390-63821409 Msa0341890:intron 30.0%
TGATGACTTTCAATAACATG+CGG - chr2_4:63821722-63821741 None:intergenic 30.0%
TTATTGAAAGTCATCATCCT+CGG + chr2_4:63821726-63821745 Msa0341890:CDS 30.0%
AATTGAAAAGAAGAAGGAGA+AGG - chr2_4:63821787-63821806 None:intergenic 30.0%
GACAAATGTTAGTAAGTTAG+CGG + chr2_4:63822109-63822128 Msa0341890:intron 30.0%
CAATATTAAGTGTATGACCT+TGG - chr2_4:63822164-63822183 None:intergenic 30.0%
ACACTGTCGTAAATTGTAAT+CGG - chr2_4:63822357-63822376 None:intergenic 30.0%
GAGAATGGAAAAAAGAAGTA+TGG - chr2_4:63822425-63822444 None:intergenic 30.0%
GTGATATTCTGACATCAATT+TGG - chr2_4:63822508-63822527 None:intergenic 30.0%
! TATCAGCTTTTAAATAGGAC+TGG - chr2_4:63822550-63822569 None:intergenic 30.0%
!!! TTTCATCTACCCTGTTTTTT+TGG + chr2_4:63822583-63822602 Msa0341890:intron 30.0%
!!! TTCATCTACCCTGTTTTTTT+GGG + chr2_4:63822584-63822603 Msa0341890:intron 30.0%
!! ACAAAAGCATCTTCTAACTT+TGG + chr2_4:63822672-63822691 Msa0341890:intron 30.0%
CTTAGACAAAAGTCAAATGT+TGG + chr2_4:63822817-63822836 Msa0341890:intron 30.0%
! AATTTAATCCTGTGCACTTT+TGG + chr2_4:63822855-63822874 Msa0341890:intron 30.0%
TCACTACATGATGAAAAACA+AGG + chr2_4:63822895-63822914 Msa0341890:intron 30.0%
AACAAGGTTTAAGAAGCTAT+TGG + chr2_4:63822911-63822930 Msa0341890:intron 30.0%
ACAAGGTTTAAGAAGCTATT+GGG + chr2_4:63822912-63822931 Msa0341890:intron 30.0%
GATATCTCTTCAATGTGATT+TGG - chr2_4:63822957-63822976 None:intergenic 30.0%
GATTCTTGAGCAATATGTTT+AGG - chr2_4:63822979-63822998 None:intergenic 30.0%
TACTTCCTAGATACATATCT+AGG + chr2_4:63823028-63823047 Msa0341890:intron 30.0%
ATATGCCTAGATATGTATCT+AGG - chr2_4:63823036-63823055 None:intergenic 30.0%
! GTTTCTTTTTCCTGGATAAA+AGG + chr2_4:63823165-63823184 Msa0341890:intron 30.0%
! TTAACACAATTTCTAAAGGG+CGG + chr2_4:63823544-63823563 Msa0341890:intron 30.0%
TTGATTTACCATATGTTCAC+GGG + chr2_4:63823763-63823782 Msa0341890:intron 30.0%
!!! TTCATTCTTGAGAGCATTTT+TGG - chr2_4:63823939-63823958 None:intergenic 30.0%
AAAACTCACAATTCTTCTTC+AGG - chr2_4:63823962-63823981 None:intergenic 30.0%
AGAATATTAAAGATGGTAGG+GGG + chr2_4:63824077-63824096 Msa0341890:intron 30.0%
! ATTTGAAGGATGCAGTATTT+TGG - chr2_4:63824424-63824443 None:intergenic 30.0%
AAATACTGCATCCTTCAAAT+TGG + chr2_4:63824424-63824443 Msa0341890:three_prime_UTR 30.0%
AGAGTCGTGTTGTAATTGTT+GGG + chr2_4:63819570-63819589 Msa0341890:five_prime_UTR 35.0%
TTGTTTCATGGAGATGAAGA+TGG + chr2_4:63819961-63819980 Msa0341890:intron 35.0%
TGTTTCATGGAGATGAAGAT+GGG + chr2_4:63819962-63819981 Msa0341890:intron 35.0%
TGGTCTGAAAATCTTGAATC+TGG + chr2_4:63820008-63820027 Msa0341890:intron 35.0%
!! TAGTTCGAACGTTGTTTTGT+TGG + chr2_4:63820058-63820077 Msa0341890:intron 35.0%
AACGACTACTACTGTCAATA+CGG - chr2_4:63820154-63820173 None:intergenic 35.0%
! AATACTTTGAAGGGAGTTGT+TGG + chr2_4:63820357-63820376 Msa0341890:intron 35.0%
AACTTGAGTCCATTCTATGT+TGG + chr2_4:63820380-63820399 Msa0341890:intron 35.0%
CACTGCGTTTATTTGCAATT+TGG + chr2_4:63820443-63820462 Msa0341890:intron 35.0%
!! ATTGTTGGGTTTTGCTTTTG+TGG + chr2_4:63820549-63820568 Msa0341890:intron 35.0%
!! TTTTGCTTTTGTGGTGTACT+GGG + chr2_4:63820558-63820577 Msa0341890:intron 35.0%
! ATGAATGGTTTGCAAAGAAG+AGG + chr2_4:63821455-63821474 Msa0341890:intron 35.0%
TTCAAAAGAACCAATCCACA+TGG - chr2_4:63821519-63821538 None:intergenic 35.0%
!! TTTTATTTGTTTGGCAGGGT+TGG + chr2_4:63821928-63821947 Msa0341890:intron 35.0%
AATCAGTATAAGGCTACCAT+TGG + chr2_4:63821994-63822013 Msa0341890:CDS 35.0%
ATTAAGTGTATGACCTTGGT+AGG - chr2_4:63822160-63822179 None:intergenic 35.0%
GTAATCGGCATCAACTAATT+CGG - chr2_4:63822342-63822361 None:intergenic 35.0%
! TTTAAATAGGACTGGTGAAG+TGG - chr2_4:63822542-63822561 None:intergenic 35.0%
! TTTTGTGACTAGTGTGAACA+AGG - chr2_4:63822658-63822677 None:intergenic 35.0%
GAGACAAGAATGTCAAACAT+TGG - chr2_4:63822773-63822792 None:intergenic 35.0%
ATGTAGTGAGAGGAACAAAA+TGG - chr2_4:63822884-63822903 None:intergenic 35.0%
! GTTTTTCATCATGTAGTGAG+AGG - chr2_4:63822894-63822913 None:intergenic 35.0%
TTGAGATATGATGACATGGT+TGG + chr2_4:63823131-63823150 Msa0341890:intron 35.0%
TGAGATATGATGACATGGTT+GGG + chr2_4:63823132-63823151 Msa0341890:intron 35.0%
!! CTTTTGAAAACCTTAACCAC+TGG + chr2_4:63823470-63823489 Msa0341890:CDS 35.0%
GGAAACAAAGTAGATGTTGA+TGG + chr2_4:63823644-63823663 Msa0341890:CDS 35.0%
! AACAAAGTAGATGTTGATGG+TGG + chr2_4:63823647-63823666 Msa0341890:CDS 35.0%
TGATTTACCATATGTTCACG+GGG + chr2_4:63823764-63823783 Msa0341890:intron 35.0%
AAAGTATGGTATATTCCCCT+TGG - chr2_4:63823864-63823883 None:intergenic 35.0%
!! AAAGGAGGGTTTTAATGTTG+AGG + chr2_4:63823895-63823914 Msa0341890:CDS 35.0%
TTTATGCGCATTGTTAACTG+TGG + chr2_4:63823999-63824018 Msa0341890:intron 35.0%
! GTTTCAAGTGATTCTCTTTG+AGG + chr2_4:63824227-63824246 Msa0341890:intron 35.0%
ATCTGTCATAATCAACAACC+AGG - chr2_4:63824291-63824310 None:intergenic 35.0%
ATGCCAGAAACAATTGATGT+CGG + chr2_4:63824313-63824332 Msa0341890:CDS 35.0%
AGAATGTAGCACCAATTTGA+AGG - chr2_4:63824438-63824457 None:intergenic 35.0%
! ATTTTCAGCAATGAAAAGCC+TGG + chr2_4:63824460-63824479 Msa0341890:three_prime_UTR 35.0%
! TTTTCAGCAATGAAAAGCCT+GGG + chr2_4:63824461-63824480 Msa0341890:three_prime_UTR 35.0%
GAGAGTCGTGTTGTAATTGT+TGG + chr2_4:63819569-63819588 Msa0341890:five_prime_UTR 40.0%
TATTTGTTCATCCCTCGATC+TGG + chr2_4:63820245-63820264 Msa0341890:intron 40.0%
TCAAGATCACCATGAATCTG+TGG + chr2_4:63820283-63820302 Msa0341890:intron 40.0%
TCACCATGAATCTGTGGATT+CGG + chr2_4:63820289-63820308 Msa0341890:intron 40.0%
! CGGTTCGTAATTGGTTGTTT+TGG + chr2_4:63820309-63820328 Msa0341890:intron 40.0%
!!! ATTGGTTGTTTTGGCTCGAA+AGG + chr2_4:63820318-63820337 Msa0341890:intron 40.0%
!!! TTGGTTGTTTTGGCTCGAAA+GGG + chr2_4:63820319-63820338 Msa0341890:intron 40.0%
!! GTTTTGCTTTTGTGGTGTAC+TGG + chr2_4:63820557-63820576 Msa0341890:intron 40.0%
! GAGAAAGAAGTACGAGACTA+AGG - chr2_4:63820597-63820616 None:intergenic 40.0%
TTTGCAAAGAAGAGGACATG+TGG + chr2_4:63821463-63821482 Msa0341890:intron 40.0%
AAACATCGTTGAATGCCATG+TGG + chr2_4:63821501-63821520 Msa0341890:intron 40.0%
TGTGTGTGTGTGTGTGTTAT+GGG - chr2_4:63821656-63821675 None:intergenic 40.0%
AGAGTTTCAATTCCGATCCA+TGG + chr2_4:63821680-63821699 Msa0341890:exon 40.0%
TTATATACCCACTATCACCG+AGG - chr2_4:63821746-63821765 None:intergenic 40.0%
CAACTTGAACTTCCTTGGTA+AGG - chr2_4:63822029-63822048 None:intergenic 40.0%
GTCTTCAACTTGAACTTCCT+TGG - chr2_4:63822034-63822053 None:intergenic 40.0%
!! AGGAAGTTCAAGTTGAAGAC+AGG + chr2_4:63822034-63822053 Msa0341890:CDS 40.0%
TCGACGAGACAACACATATA+CGG + chr2_4:63822188-63822207 Msa0341890:intron 40.0%
AGTCTGTGCTTCTTTCGTTA+CGG - chr2_4:63822388-63822407 None:intergenic 40.0%
GTGAACTTCATGAACAGAAC+AGG - chr2_4:63822718-63822737 None:intergenic 40.0%
TTACATGACCCACTTGAAGA+TGG - chr2_4:63822743-63822762 None:intergenic 40.0%
! AATGGATTCCAAAAGTGCAC+AGG - chr2_4:63822866-63822885 None:intergenic 40.0%
! GAAGCTATTGGGCATGTTTT+TGG + chr2_4:63822923-63822942 Msa0341890:intron 40.0%
GTGCTTGAGATATGATGACA+TGG + chr2_4:63823127-63823146 Msa0341890:intron 40.0%
!!! AAGCATCGATCCTTTTATCC+AGG - chr2_4:63823178-63823197 None:intergenic 40.0%
TTGTTGTGTACATGCAGATC+TGG + chr2_4:63823350-63823369 Msa0341890:intron 40.0%
TGTTGTGTACATGCAGATCT+GGG + chr2_4:63823351-63823370 Msa0341890:intron 40.0%
TCCTGAAAACTTCCCATTTG+TGG + chr2_4:63823616-63823635 Msa0341890:CDS 40.0%
! ACCACAAATGGGAAGTTTTC+AGG - chr2_4:63823620-63823639 None:intergenic 40.0%
AAACTTCCCATTTGTGGTGT+TGG + chr2_4:63823622-63823641 Msa0341890:CDS 40.0%
AACTTCCCATTTGTGGTGTT+GGG + chr2_4:63823623-63823642 Msa0341890:CDS 40.0%
TGTTTCCCAACACCACAAAT+GGG - chr2_4:63823631-63823650 None:intergenic 40.0%
TTGTTTCCCAACACCACAAA+TGG - chr2_4:63823632-63823651 None:intergenic 40.0%
TAGACTTTCTTCCTCTTGAG+AGG + chr2_4:63823737-63823756 Msa0341890:intron 40.0%
AGACTTTCTTCCTCTTGAGA+GGG + chr2_4:63823738-63823757 Msa0341890:intron 40.0%
TAAATCAAACCCCTCTCAAG+AGG - chr2_4:63823751-63823770 None:intergenic 40.0%
GATTTACCATATGTTCACGG+GGG + chr2_4:63823765-63823784 Msa0341890:intron 40.0%
ATTTACCATATGTTCACGGG+GGG + chr2_4:63823766-63823785 Msa0341890:intron 40.0%
! GCATTTGTTGCTTCTGTTTC+AGG + chr2_4:63823805-63823824 Msa0341890:intron 40.0%
! GGTTTCTGAGAAGAAAGCAA+AGG + chr2_4:63823826-63823845 Msa0341890:intron 40.0%
TTTGCAGAGGTCTCAAAGTA+TGG - chr2_4:63823878-63823897 None:intergenic 40.0%
!! ATACTTTGAGACCTCTGCAA+AGG + chr2_4:63823877-63823896 Msa0341890:CDS 40.0%
ATTAAAACCCTCCTTTGCAG+AGG - chr2_4:63823891-63823910 None:intergenic 40.0%
! TCAAGTGATTCTCTTTGAGG+AGG + chr2_4:63824230-63824249 Msa0341890:intron 40.0%
TTCATGGAGATGAAGATGGG+TGG + chr2_4:63819965-63819984 Msa0341890:intron 45.0%
! TAGCATTGCTACGGCTCTTT+TGG + chr2_4:63819988-63820007 Msa0341890:intron 45.0%
!! TGATGTTGCTCTAAAGGGCT+AGG + chr2_4:63820116-63820135 Msa0341890:intron 45.0%
GACGCAAGAAGCAACCATAA+AGG - chr2_4:63820199-63820218 None:intergenic 45.0%
GAACCGAATCCACAGATTCA+TGG - chr2_4:63820295-63820314 None:intergenic 45.0%
! CTGTGGATTCGGTTCGTAAT+TGG + chr2_4:63820300-63820319 Msa0341890:intron 45.0%
GATCGTCTGCCAACATAGAA+TGG - chr2_4:63820392-63820411 None:intergenic 45.0%
ACAATCCACGAACACACGTA+GGG - chr2_4:63820477-63820496 None:intergenic 45.0%
TACAATCCACGAACACACGT+AGG - chr2_4:63820478-63820497 None:intergenic 45.0%
! GTGTGTTCGTGGATTGTATG+TGG + chr2_4:63820480-63820499 Msa0341890:intron 45.0%
! TCGTGGATTGTATGTGGTAG+TGG + chr2_4:63820486-63820505 Msa0341890:intron 45.0%
AAGTACGAGACTAAGGAGCA+AGG - chr2_4:63820590-63820609 None:intergenic 45.0%
AACTCAGGTCGACCTGTAAT+TGG - chr2_4:63821016-63821035 None:intergenic 45.0%
AGGACATGTGGCAATTGCTT+TGG + chr2_4:63821475-63821494 Msa0341890:intron 45.0%
TCGTTGAATGCCATGTGGAT+TGG + chr2_4:63821506-63821525 Msa0341890:intron 45.0%
ATATGAGCGAGTCAGAAGAC+AGG - chr2_4:63821594-63821613 None:intergenic 45.0%
CTGTGTGTGTGTGTGTGTTA+TGG - chr2_4:63821657-63821676 None:intergenic 45.0%
GAGAATGAGAAGCCATGGAT+CGG - chr2_4:63821695-63821714 None:intergenic 45.0%
GATCCATGGCTTCTCATTCT+CGG + chr2_4:63821694-63821713 Msa0341890:exon 45.0%
TCATCATCCTCGGTGATAGT+GGG + chr2_4:63821736-63821755 Msa0341890:CDS 45.0%
GGTAAGGAAATCAGCACCAA+TGG - chr2_4:63822013-63822032 None:intergenic 45.0%
!! TGGTGCTGATTTCCTTACCA+AGG + chr2_4:63822014-63822033 Msa0341890:CDS 45.0%
AGACAGGTTGTTCACATTGC+AGG + chr2_4:63822050-63822069 Msa0341890:CDS 45.0%
ACCAATTGAGCTTCCTACCA+AGG + chr2_4:63822144-63822163 Msa0341890:intron 45.0%
ACCTTGGTAGGAAGCTCAAT+TGG - chr2_4:63822148-63822167 None:intergenic 45.0%
CGACGAGACAACACATATAC+GGG + chr2_4:63822189-63822208 Msa0341890:intron 45.0%
GTCTGTGCTTCTTTCGTTAC+GGG - chr2_4:63822387-63822406 None:intergenic 45.0%
AGTTCACCACCATCTTCAAG+TGG + chr2_4:63822731-63822750 Msa0341890:intron 45.0%
GTTCACCACCATCTTCAAGT+GGG + chr2_4:63822732-63822751 Msa0341890:intron 45.0%
CAGGAGAGGTTTCAAAGTCT+TGG + chr2_4:63823385-63823404 Msa0341890:CDS 45.0%
GAGGTTTCAAAGTCTTGGTG+TGG + chr2_4:63823390-63823409 Msa0341890:CDS 45.0%
GCGAGAAGAGTTCCTTATTC+AGG + chr2_4:63823492-63823511 Msa0341890:CDS 45.0%
!! GGGAAGTTTTCAGGATCAGA+TGG - chr2_4:63823611-63823630 None:intergenic 45.0%
GACTTTCTTCCTCTTGAGAG+GGG + chr2_4:63823739-63823758 Msa0341890:intron 45.0%
ATTAACCCCCCGTGAACATA+TGG - chr2_4:63823774-63823793 None:intergenic 45.0%
CTGAGAAGAAAGCAAAGGCA+TGG + chr2_4:63823831-63823850 Msa0341890:CDS 45.0%
! TTTGAGACCTCTGCAAAGGA+GGG + chr2_4:63823881-63823900 Msa0341890:CDS 45.0%
! GTGATTCTCTTTGAGGAGGA+TGG + chr2_4:63824234-63824253 Msa0341890:intron 45.0%
! TTCTCTTTGAGGAGGATGGT+TGG + chr2_4:63824238-63824257 Msa0341890:intron 45.0%
CCACCGACATCAATTGTTTC+TGG - chr2_4:63824319-63824338 None:intergenic 45.0%
CCAGAAACAATTGATGTCGG+TGG + chr2_4:63824316-63824335 Msa0341890:CDS 45.0%
GAAACAATTGATGTCGGTGG+CGG + chr2_4:63824319-63824338 Msa0341890:CDS 45.0%
GTCAGCTTCACATGCAAGAT+TGG + chr2_4:63824396-63824415 Msa0341890:three_prime_UTR 45.0%
TCCTTCTTGTGTCTCTCTAG+TGG + chr2_4:63824492-63824511 Msa0341890:three_prime_UTR 45.0%
!! AATCAAATAAAATAAAATAA+AGG + chr2_4:63821144-63821163 Msa0341890:intron 5.0%
!!! TTTATTTTTTTTTATTTGTT+TGG + chr2_4:63821919-63821938 Msa0341890:intron 5.0%
!! GAGGTATCGTGTAACACGAG+AGG + chr2_4:63819527-63819546 Msa0341890:five_prime_UTR 50.0%
ATCGTGTAACACGAGAGGAG+AGG + chr2_4:63819532-63819551 Msa0341890:five_prime_UTR 50.0%
GTGTTAACCCGTGCAATGCA+CGG + chr2_4:63819614-63819633 Msa0341890:intron 50.0%
TGTTAACCCGTGCAATGCAC+GGG + chr2_4:63819615-63819634 Msa0341890:intron 50.0%
TCTATCACCCGTGCATTGCA+CGG - chr2_4:63819625-63819644 None:intergenic 50.0%
GATGGGTGGTAGCATTGCTA+CGG + chr2_4:63819979-63819998 Msa0341890:intron 50.0%
ATGGTTGCTTCTTGCGTCGT+TGG + chr2_4:63820201-63820220 Msa0341890:intron 50.0%
TCATCCCTCGATCTGGACTT+CGG + chr2_4:63820252-63820271 Msa0341890:intron 50.0%
CAATCCACGAACACACGTAG+GGG - chr2_4:63820476-63820495 None:intergenic 50.0%
GTCATCATCCTCGGTGATAG+TGG + chr2_4:63821735-63821754 Msa0341890:CDS 50.0%
! TAGGACTGGTGAAGTGGTGA+TGG - chr2_4:63822536-63822555 None:intergenic 50.0%
CATGACCCACTTGAAGATGG+TGG - chr2_4:63822740-63822759 None:intergenic 50.0%
! ATGCAGATCTGGGATACTGC+TGG + chr2_4:63823361-63823380 Msa0341890:intron 50.0%
ACTCTTCTCGCCAGTGGTTA+AGG - chr2_4:63823483-63823502 None:intergenic 50.0%
TAAGGAACTCTTCTCGCCAG+TGG - chr2_4:63823489-63823508 None:intergenic 50.0%
! AAAGGCATGGTGTGCTTCCA+AGG + chr2_4:63823844-63823863 Msa0341890:CDS 50.0%
AAGGCATGGTGTGCTTCCAA+GGG + chr2_4:63823845-63823864 Msa0341890:CDS 50.0%
!! CTTTGAGACCTCTGCAAAGG+AGG + chr2_4:63823880-63823899 Msa0341890:CDS 50.0%
CAAGAAGGACAAGTTGTCCC+AGG - chr2_4:63824481-63824500 None:intergenic 50.0%
GCCACTAGAGAGACACAAGA+AGG - chr2_4:63824496-63824515 None:intergenic 50.0%
GTAACACGAGAGGAGAGGAG+AGG + chr2_4:63819537-63819556 Msa0341890:five_prime_UTR 55.0%
CTATCACCCGTGCATTGCAC+GGG - chr2_4:63819624-63819643 None:intergenic 55.0%
GTACTGCTCTGACATCGACG+CGG + chr2_4:63819836-63819855 Msa0341890:intron 55.0%
GTTGCTTCTTGCGTCGTTGG+TGG + chr2_4:63820204-63820223 Msa0341890:intron 55.0%
TCAGCCGAAGTCCAGATCGA+GGG - chr2_4:63820259-63820278 None:intergenic 55.0%
TTCAGCCGAAGTCCAGATCG+AGG - chr2_4:63820260-63820279 None:intergenic 55.0%
TGAGCGAGTCAGAAGACAGG+TGG - chr2_4:63821591-63821610 None:intergenic 55.0%
! GATCTGGGATACTGCTGGTC+AGG + chr2_4:63823366-63823385 Msa0341890:intron 55.0%
! CTTGGTGTGGCTTTCTACCG+AGG + chr2_4:63823403-63823422 Msa0341890:CDS 55.0%
GGACACAGCAATCTGCACCT+CGG - chr2_4:63823423-63823442 None:intergenic 55.0%
AGGCATGGTGTGCTTCCAAG+GGG + chr2_4:63823846-63823865 Msa0341890:CDS 55.0%
! ACAATTGATGTCGGTGGCGG+TGG + chr2_4:63824322-63824341 Msa0341890:CDS 55.0%
ACGAGAGGAGAGGAGAGGAG+AGG + chr2_4:63819542-63819561 Msa0341890:five_prime_UTR 60.0%
AGGAGAGGAGAGGAGAGGAG+AGG + chr2_4:63819547-63819566 Msa0341890:five_prime_UTR 60.0%
GCGCCGAGAATGAGAAGCCA+TGG - chr2_4:63821700-63821719 None:intergenic 60.0%
GGGATACTGCTGGTCAGGAG+AGG + chr2_4:63823371-63823390 Msa0341890:CDS 60.0%
! TTGATGTCGGTGGCGGTGGA+CGG + chr2_4:63824326-63824345 Msa0341890:CDS 60.0%
GGACGGCAACAGAGGTCAAC+AGG + chr2_4:63824343-63824362 Msa0341890:CDS 60.0%
CGCACCCCTACGTGTGTTCG+TGG + chr2_4:63820469-63820488 Msa0341890:intron 65.0%
GTGGCGGTGGACGGCAACAG+AGG + chr2_4:63824335-63824354 Msa0341890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63819501 63824704 63819501 ID=Msa0341890;Name=Msa0341890
chr2_4 mRNA 63819501 63824704 63819501 ID=Msa0341890-mRNA-1;Parent=Msa0341890;Name=Msa0341890-mRNA-1;_AED=0.13;_eAED=0.13;_QI=210|1|1|1|0.71|0.62|8|326|209
chr2_4 exon 63819501 63819613 63819501 ID=Msa0341890-mRNA-1:exon:20435;Parent=Msa0341890-mRNA-1
chr2_4 exon 63821555 63821617 63821555 ID=Msa0341890-mRNA-1:exon:20436;Parent=Msa0341890-mRNA-1
chr2_4 exon 63821665 63821757 63821665 ID=Msa0341890-mRNA-1:exon:20437;Parent=Msa0341890-mRNA-1
chr2_4 exon 63821945 63822071 63821945 ID=Msa0341890-mRNA-1:exon:20438;Parent=Msa0341890-mRNA-1
chr2_4 exon 63823367 63823513 63823367 ID=Msa0341890-mRNA-1:exon:20439;Parent=Msa0341890-mRNA-1
chr2_4 exon 63823602 63823682 63823602 ID=Msa0341890-mRNA-1:exon:20440;Parent=Msa0341890-mRNA-1
chr2_4 exon 63823827 63823972 63823827 ID=Msa0341890-mRNA-1:exon:20441;Parent=Msa0341890-mRNA-1
chr2_4 exon 63824309 63824704 63824309 ID=Msa0341890-mRNA-1:exon:20442;Parent=Msa0341890-mRNA-1
chr2_4 five_prime_UTR 63819501 63819613 63819501 ID=Msa0341890-mRNA-1:five_prime_utr;Parent=Msa0341890-mRNA-1
chr2_4 five_prime_UTR 63821555 63821617 63821555 ID=Msa0341890-mRNA-1:five_prime_utr;Parent=Msa0341890-mRNA-1
chr2_4 five_prime_UTR 63821665 63821698 63821665 ID=Msa0341890-mRNA-1:five_prime_utr;Parent=Msa0341890-mRNA-1
chr2_4 CDS 63821699 63821757 63821699 ID=Msa0341890-mRNA-1:cds;Parent=Msa0341890-mRNA-1
chr2_4 CDS 63821945 63822071 63821945 ID=Msa0341890-mRNA-1:cds;Parent=Msa0341890-mRNA-1
chr2_4 CDS 63823367 63823513 63823367 ID=Msa0341890-mRNA-1:cds;Parent=Msa0341890-mRNA-1
chr2_4 CDS 63823602 63823682 63823602 ID=Msa0341890-mRNA-1:cds;Parent=Msa0341890-mRNA-1
chr2_4 CDS 63823827 63823972 63823827 ID=Msa0341890-mRNA-1:cds;Parent=Msa0341890-mRNA-1
chr2_4 CDS 63824309 63824378 63824309 ID=Msa0341890-mRNA-1:cds;Parent=Msa0341890-mRNA-1
chr2_4 three_prime_UTR 63824379 63824704 63824379 ID=Msa0341890-mRNA-1:three_prime_utr;Parent=Msa0341890-mRNA-1
Gene Sequence

>Msa0341890

ATGGCTTCTCATTCTCGGCGCCGCATGTTATTGAAAGTCATCATCCTCGGTGATAGTGGGGTTGGCAAAACATCACTCATGAATCAGTATGTGAATCGAAAGTTTAGTAATCAGTATAAGGCTACCATTGGTGCTGATTTCCTTACCAAGGAAGTTCAAGTTGAAGACAGGTTGTTCACATTGCAGATCTGGGATACTGCTGGTCAGGAGAGGTTTCAAAGTCTTGGTGTGGCTTTCTACCGAGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGAAAACCTTAACCACTGGCGAGAAGAGTTCCTTATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTGGTGTTGGGAAACAAAGTAGATGTTGATGGTGGAAATAGCCGAGTTGTTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCCAAGGGGAATATACCATACTTTGAGACCTCTGCAAAGGAGGGTTTTAATGTTGAGGCTGCTTTTGAGTGTATTACCAAAAATGCTCTCAAGAATGAACCTGAAGAAGAATTATACATGCCAGAAACAATTGATGTCGGTGGCGGTGGACGGCAACAGAGGTCAACAGGCTGTGAATGTTGA
Protein sequence

>Msa0341890

MASHSRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQVEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECITKNALKNEPEEELYMPETIDVGGGGRQQRSTGCEC*