AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555640 MtrunA17_Chr4g0046801 100.000 381 0 0 1 381 80 460 0.0 754
Msa0555640 MtrunA17_Chr4g0046801 99.738 381 1 0 1 381 4 384 0.0 752
Msa0555640 MtrunA17_Chr8g0342711 100.000 381 0 0 1 381 156 536 0.0 754
Msa0555640 MtrunA17_Chr8g0342711 99.738 381 1 0 1 381 4 384 0.0 751
Msa0555640 MtrunA17_Chr8g0342711 99.738 381 1 0 1 381 80 460 0.0 751
Msa0555640 MtrunA17_Chr4g0041641 100.000 381 0 0 1 381 81 461 0.0 753
Msa0555640 MtrunA17_Chr4g0041641 99.738 381 1 0 1 381 5 385 0.0 750
Msa0555640 MtrunA17_Chr4g0041701 99.738 381 1 0 1 381 153 533 0.0 752
Msa0555640 MtrunA17_Chr4g0041701 99.738 381 1 0 1 381 1 381 0.0 751
Msa0555640 MtrunA17_Chr4g0041701 99.738 381 1 0 1 381 77 457 0.0 751
Msa0555640 MtrunA17_Chr8g0377821 100.000 380 0 0 1 380 9 388 0.0 751
Msa0555640 MtrunA17_Chr4g0048591 99.475 381 2 0 1 381 156 536 0.0 749
Msa0555640 MtrunA17_Chr4g0048591 99.213 381 3 0 1 381 4 384 0.0 747
Msa0555640 MtrunA17_Chr4g0048591 99.213 381 3 0 1 381 80 460 0.0 747
Msa0555640 MtrunA17_Chr4g0046831 95.801 381 0 1 1 381 232 596 0.0 711
Msa0555640 MtrunA17_Chr4g0046831 95.276 381 2 1 1 381 4 368 0.0 704
Msa0555640 MtrunA17_Chr7g0274921 100.000 229 0 0 153 381 3 231 4.07e-163 456
Msa0555640 MtrunA17_Chr7g0274921 99.563 229 1 0 1 229 3 231 4.63e-162 453
Msa0555640 MtrunA17_Chr7g0274921 99.563 229 1 0 77 305 3 231 4.63e-162 453
Msa0555640 MtrunA17_Chr1g0181441 100.000 228 0 0 1 228 1 228 2.09e-161 452
Msa0555640 MtrunA17_Chr1g0181441 100.000 228 0 0 77 304 1 228 2.09e-161 452
Msa0555640 MtrunA17_Chr1g0181441 100.000 228 0 0 153 380 1 228 2.09e-161 452
Msa0555640 MtrunA17_Chr4g0041751 89.035 228 25 0 1 228 1 228 1.04e-141 402
Msa0555640 MtrunA17_Chr4g0041751 89.035 228 25 0 77 304 1 228 1.04e-141 402
Msa0555640 MtrunA17_Chr4g0041751 89.035 228 25 0 153 380 1 228 1.04e-141 402
Msa0555640 MtrunA17_Chr6g0475961 100.000 189 0 0 1 189 4 192 2.24e-131 374
Msa0555640 MtrunA17_Chr6g0475961 100.000 189 0 0 77 265 4 192 2.24e-131 374
Msa0555640 MtrunA17_Chr6g0475961 100.000 189 0 0 153 341 4 192 2.24e-131 374
Msa0555640 MtrunA17_Chr6g0475961 99.346 153 1 0 229 381 4 156 6.00e-104 305
Msa0555640 MtrunA17_Chr4g0037241 80.263 152 30 0 1 152 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr4g0037241 80.263 152 30 0 77 228 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr4g0037241 80.263 152 30 0 153 304 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr4g0037241 80.263 152 30 0 229 380 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr5g0444101 80.263 152 30 0 1 152 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr5g0444101 80.263 152 30 0 77 228 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr5g0444101 80.263 152 30 0 153 304 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr5g0444101 80.263 152 30 0 229 380 1 152 3.22e-81 245
Msa0555640 MtrunA17_Chr8g0374171 95.276 127 6 0 43 169 40 166 6.24e-72 222
Msa0555640 MtrunA17_Chr8g0374171 95.276 127 6 0 119 245 40 166 6.24e-72 222
Msa0555640 MtrunA17_Chr8g0374171 95.276 127 6 0 195 321 40 166 6.24e-72 222
Msa0555640 MtrunA17_Chr8g0374171 96.364 110 4 0 271 380 40 149 8.58e-61 193
Msa0555640 MtrunA17_Chr8g0374171 95.699 93 4 0 1 93 74 166 6.31e-47 157
Msa0555640 MtrunA17_Chr6g0475951 100.000 77 0 0 305 381 1 77 9.43e-48 156
Msa0555640 MtrunA17_Chr6g0475951 98.701 77 1 0 1 77 1 77 8.83e-47 154
Msa0555640 MtrunA17_Chr6g0475951 98.701 77 1 0 77 153 1 77 8.83e-47 154
Msa0555640 MtrunA17_Chr6g0475951 98.701 77 1 0 153 229 1 77 8.83e-47 154
Msa0555640 MtrunA17_Chr6g0475951 98.701 77 1 0 229 305 1 77 8.83e-47 154
Msa0555640 MtrunA17_Chr7g0266661 98.701 77 1 0 1 77 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr7g0266661 98.701 77 1 0 77 153 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr7g0266661 98.701 77 1 0 153 229 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr7g0266661 98.701 77 1 0 229 305 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr7g0266661 98.701 77 1 0 305 381 1 77 5.69e-47 156
Msa0555640 MtrunA17_Chr1g0178381 98.701 77 1 0 1 77 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr1g0178381 98.701 77 1 0 77 153 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr1g0178381 98.701 77 1 0 153 229 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr1g0178381 98.701 77 1 0 229 305 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr1g0178381 98.701 77 1 0 305 381 1 77 5.69e-47 156
Msa0555640 MtrunA17_Chr3g0127481 98.701 77 1 0 1 77 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr3g0127481 98.701 77 1 0 77 153 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr3g0127481 98.701 77 1 0 153 229 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr3g0127481 98.701 77 1 0 229 305 1 77 4.22e-47 157
Msa0555640 MtrunA17_Chr3g0127481 98.701 77 1 0 305 381 1 77 5.69e-47 156
Msa0555640 MtrunA17_Chr8g0380181 97.436 78 2 0 1 78 1 78 1.41e-46 156
Msa0555640 MtrunA17_Chr8g0380181 97.436 78 2 0 77 154 1 78 1.41e-46 156
Msa0555640 MtrunA17_Chr8g0380181 97.436 78 2 0 153 230 1 78 1.41e-46 156
Msa0555640 MtrunA17_Chr8g0380181 97.436 78 2 0 229 306 1 78 1.41e-46 156
Msa0555640 MtrunA17_Chr8g0380181 100.000 76 0 0 305 380 1 76 1.63e-46 156
Msa0555640 MtrunA17_Chr5g0413361 97.436 78 2 0 1 78 1 78 1.67e-46 156
Msa0555640 MtrunA17_Chr5g0413361 97.436 78 2 0 77 154 1 78 1.67e-46 156
Msa0555640 MtrunA17_Chr5g0413361 97.436 78 2 0 153 230 1 78 1.67e-46 156
Msa0555640 MtrunA17_Chr5g0413361 97.436 78 2 0 229 306 1 78 1.67e-46 156
Msa0555640 MtrunA17_Chr5g0413361 100.000 76 0 0 305 380 1 76 1.96e-46 156
Msa0555640 MtrunA17_Chr1g0169371 71.053 76 22 0 1 76 215 290 1.61e-26 107
Msa0555640 MtrunA17_Chr1g0169371 71.053 76 22 0 77 152 215 290 1.61e-26 107
Msa0555640 MtrunA17_Chr1g0169371 71.053 76 22 0 153 228 215 290 1.61e-26 107
Msa0555640 MtrunA17_Chr1g0169371 71.053 76 22 0 229 304 215 290 1.61e-26 107
Msa0555640 MtrunA17_Chr1g0169371 71.053 76 22 0 305 380 215 290 1.61e-26 107
Msa0555640 MtrunA17_Chr5g0433721 68.831 77 23 1 1 76 194 270 1.41e-25 104
Msa0555640 MtrunA17_Chr5g0433721 68.831 77 23 1 77 152 194 270 1.41e-25 104
Msa0555640 MtrunA17_Chr5g0433721 68.831 77 23 1 153 228 194 270 1.41e-25 104
Msa0555640 MtrunA17_Chr5g0433721 68.831 77 23 1 229 304 194 270 1.41e-25 104
Msa0555640 MtrunA17_Chr5g0433721 68.831 77 23 1 305 380 194 270 1.41e-25 104
Msa0555640 MtrunA17_Chr5g0433631 63.855 83 30 0 67 149 256 338 1.42e-25 105
Msa0555640 MtrunA17_Chr5g0433631 63.855 83 30 0 143 225 256 338 1.42e-25 105
Msa0555640 MtrunA17_Chr5g0433631 63.855 83 30 0 219 301 256 338 1.42e-25 105
Msa0555640 MtrunA17_Chr5g0433631 63.855 83 30 0 295 377 256 338 1.42e-25 105
Msa0555640 MtrunA17_Chr5g0433631 69.863 73 22 0 1 73 266 338 2.69e-25 105
Msa0555640 MtrunA17_Chr5g0424981 60.000 75 30 0 1 75 2 76 3.40e-23 92.0
Msa0555640 MtrunA17_Chr5g0424981 60.000 75 30 0 77 151 2 76 3.40e-23 92.0
Msa0555640 MtrunA17_Chr5g0424981 60.000 75 30 0 153 227 2 76 3.40e-23 92.0
Msa0555640 MtrunA17_Chr5g0424981 60.000 75 30 0 229 303 2 76 3.40e-23 92.0
Msa0555640 MtrunA17_Chr5g0424981 60.000 75 30 0 305 379 2 76 3.40e-23 92.0
Msa0555640 MtrunA17_Chr5g0428191 68.421 76 24 0 1 76 241 316 5.93e-23 98.2
Msa0555640 MtrunA17_Chr5g0428191 68.421 76 24 0 77 152 241 316 5.93e-23 98.2
Msa0555640 MtrunA17_Chr5g0428191 68.421 76 24 0 153 228 241 316 5.93e-23 98.2
Msa0555640 MtrunA17_Chr5g0428191 68.421 76 24 0 229 304 241 316 5.93e-23 98.2
Msa0555640 MtrunA17_Chr5g0428191 68.421 76 24 0 305 380 241 316 5.93e-23 98.2
Msa0555640 MtrunA17_Chr8g0374161 100.000 44 0 0 1 44 9 52 1.84e-22 89.4
Msa0555640 MtrunA17_Chr8g0374161 100.000 44 0 0 77 120 9 52 1.84e-22 89.4
Msa0555640 MtrunA17_Chr8g0374161 100.000 44 0 0 153 196 9 52 1.84e-22 89.4
Msa0555640 MtrunA17_Chr8g0374161 100.000 44 0 0 229 272 9 52 1.84e-22 89.4
Msa0555640 MtrunA17_Chr8g0374161 100.000 44 0 0 305 348 9 52 1.84e-22 89.4
Msa0555640 MtrunA17_Chr5g0433411 59.036 83 34 0 67 149 257 339 1.19e-21 94.7
Msa0555640 MtrunA17_Chr5g0433411 59.036 83 34 0 143 225 257 339 1.19e-21 94.7
Msa0555640 MtrunA17_Chr5g0433411 59.036 83 34 0 219 301 257 339 1.19e-21 94.7
Msa0555640 MtrunA17_Chr5g0433411 59.036 83 34 0 295 377 257 339 1.19e-21 94.7
Msa0555640 MtrunA17_Chr5g0433411 64.384 73 26 0 1 73 267 339 2.09e-21 94.0
Msa0555640 MtrunA17_Chr5g0433681 57.692 78 32 1 305 381 1 78 4.25e-21 86.7
Msa0555640 MtrunA17_Chr5g0433681 59.211 76 30 1 1 75 1 76 7.89e-21 85.9
Msa0555640 MtrunA17_Chr5g0433681 59.211 76 30 1 77 151 1 76 7.89e-21 85.9
Msa0555640 MtrunA17_Chr5g0433681 59.211 76 30 1 153 227 1 76 7.89e-21 85.9
Msa0555640 MtrunA17_Chr5g0433681 59.211 76 30 1 229 303 1 76 7.89e-21 85.9
Msa0555640 MtrunA17_Chr2g0298951 61.333 75 29 0 1 75 236 310 1.42e-20 91.3
Msa0555640 MtrunA17_Chr2g0298951 61.333 75 29 0 77 151 236 310 1.42e-20 91.3
Msa0555640 MtrunA17_Chr2g0298951 61.333 75 29 0 153 227 236 310 1.42e-20 91.3
Msa0555640 MtrunA17_Chr2g0298951 61.333 75 29 0 229 303 236 310 1.42e-20 91.3
Msa0555640 MtrunA17_Chr2g0298951 61.333 75 29 0 305 379 236 310 1.42e-20 91.3
Msa0555640 MtrunA17_Chr5g0433521 61.333 75 29 0 1 75 240 314 1.51e-20 91.3
Msa0555640 MtrunA17_Chr5g0433521 61.333 75 29 0 77 151 240 314 1.51e-20 91.3
Msa0555640 MtrunA17_Chr5g0433521 61.333 75 29 0 153 227 240 314 1.51e-20 91.3
Msa0555640 MtrunA17_Chr5g0433521 61.333 75 29 0 229 303 240 314 1.51e-20 91.3
Msa0555640 MtrunA17_Chr5g0433521 61.333 75 29 0 305 379 240 314 1.51e-20 91.3
Msa0555640 MtrunA17_Chr5g0433661 65.333 75 26 0 1 75 278 352 2.15e-20 91.3
Msa0555640 MtrunA17_Chr5g0433661 65.333 75 26 0 77 151 278 352 2.15e-20 91.3
Msa0555640 MtrunA17_Chr5g0433661 65.333 75 26 0 153 227 278 352 2.15e-20 91.3
Msa0555640 MtrunA17_Chr5g0433661 65.333 75 26 0 229 303 278 352 2.15e-20 91.3
Msa0555640 MtrunA17_Chr5g0433661 65.333 75 26 0 305 379 278 352 2.15e-20 91.3
Msa0555640 MtrunA17_Chr2g0298941 60.000 75 30 0 1 75 177 251 5.95e-20 88.2
Msa0555640 MtrunA17_Chr2g0298941 60.000 75 30 0 77 151 177 251 5.95e-20 88.2
Msa0555640 MtrunA17_Chr2g0298941 60.000 75 30 0 153 227 177 251 5.95e-20 88.2
Msa0555640 MtrunA17_Chr2g0298941 60.000 75 30 0 229 303 177 251 5.95e-20 88.2
Msa0555640 MtrunA17_Chr2g0298941 60.000 75 30 0 305 379 177 251 5.95e-20 88.2
Msa0555640 MtrunA17_Chr7g0259431 54.118 85 39 0 67 151 213 297 6.75e-20 89.0
Msa0555640 MtrunA17_Chr7g0259431 54.118 85 39 0 143 227 213 297 6.75e-20 89.0
Msa0555640 MtrunA17_Chr7g0259431 54.118 85 39 0 219 303 213 297 6.75e-20 89.0
Msa0555640 MtrunA17_Chr7g0259431 54.118 85 39 0 295 379 213 297 6.75e-20 89.0
Msa0555640 MtrunA17_Chr7g0259431 58.667 75 31 0 1 75 223 297 9.49e-20 88.6
Msa0555640 MtrunA17_Chr1g0169401 60.000 70 28 0 7 76 2 71 1.06e-19 82.4
Msa0555640 MtrunA17_Chr1g0169401 60.000 70 28 0 83 152 2 71 1.06e-19 82.4
Msa0555640 MtrunA17_Chr1g0169401 60.000 70 28 0 159 228 2 71 1.06e-19 82.4
Msa0555640 MtrunA17_Chr1g0169401 60.000 70 28 0 235 304 2 71 1.06e-19 82.4
Msa0555640 MtrunA17_Chr1g0169401 60.000 70 28 0 311 380 2 71 1.06e-19 82.4
Msa0555640 MtrunA17_Chr4g0003111 53.333 75 35 0 1 75 4 78 2.34e-18 79.0
Msa0555640 MtrunA17_Chr4g0003111 53.333 75 35 0 77 151 4 78 2.34e-18 79.0
Msa0555640 MtrunA17_Chr4g0003111 53.333 75 35 0 153 227 4 78 2.34e-18 79.0
Msa0555640 MtrunA17_Chr4g0003111 53.333 75 35 0 229 303 4 78 2.34e-18 79.0
Msa0555640 MtrunA17_Chr4g0003111 53.333 75 35 0 305 379 4 78 2.34e-18 79.0
Msa0555640 MtrunA17_Chr4g0041621 84.091 44 7 0 44 87 11 54 7.58e-18 77.0
Msa0555640 MtrunA17_Chr4g0041621 84.091 44 7 0 120 163 11 54 7.58e-18 77.0
Msa0555640 MtrunA17_Chr4g0041621 84.091 44 7 0 196 239 11 54 7.58e-18 77.0
Msa0555640 MtrunA17_Chr4g0041621 84.091 44 7 0 272 315 11 54 7.58e-18 77.0
Msa0555640 MtrunA17_Chr5g0433531 56.410 78 33 1 305 381 244 321 8.61e-18 83.6
Msa0555640 MtrunA17_Chr5g0433531 57.333 75 31 1 1 74 244 318 1.63e-17 82.8
Msa0555640 MtrunA17_Chr5g0433531 57.333 75 31 1 77 150 244 318 1.63e-17 82.8
Msa0555640 MtrunA17_Chr5g0433531 57.333 75 31 1 153 226 244 318 1.63e-17 82.8
Msa0555640 MtrunA17_Chr5g0433531 57.333 75 31 1 229 302 244 318 1.63e-17 82.8
Msa0555640 MtrunA17_Chr5g0433701 58.824 68 27 1 1 67 1 68 3.96e-17 75.9
Msa0555640 MtrunA17_Chr5g0433701 58.824 68 27 1 77 143 1 68 3.96e-17 75.9
Msa0555640 MtrunA17_Chr5g0433701 58.824 68 27 1 153 219 1 68 3.96e-17 75.9
Msa0555640 MtrunA17_Chr5g0433701 58.824 68 27 1 229 295 1 68 3.96e-17 75.9
Msa0555640 MtrunA17_Chr5g0433701 58.824 68 27 1 305 371 1 68 3.96e-17 75.9
Msa0555640 MtrunA17_Chr7g0223111 60.526 76 29 1 1 75 267 342 1.28e-16 80.1
Msa0555640 MtrunA17_Chr7g0223111 60.526 76 29 1 77 151 267 342 1.28e-16 80.1
Msa0555640 MtrunA17_Chr7g0223111 60.526 76 29 1 153 227 267 342 1.28e-16 80.1
Msa0555640 MtrunA17_Chr7g0223111 60.526 76 29 1 229 303 267 342 1.28e-16 80.1
Msa0555640 MtrunA17_Chr7g0223111 60.526 76 29 1 305 379 267 342 1.28e-16 80.1
Msa0555640 MtrunA17_Chr5g0424971 53.333 75 35 0 1 75 252 326 5.24e-16 78.2
Msa0555640 MtrunA17_Chr5g0424971 53.333 75 35 0 77 151 252 326 5.24e-16 78.2
Msa0555640 MtrunA17_Chr5g0424971 53.333 75 35 0 153 227 252 326 5.24e-16 78.2
Msa0555640 MtrunA17_Chr5g0424971 53.333 75 35 0 229 303 252 326 5.24e-16 78.2
Msa0555640 MtrunA17_Chr5g0424971 53.333 75 35 0 305 379 252 326 5.24e-16 78.2
Msa0555640 MtrunA17_Chr8g0346901 31.953 169 103 6 65 226 26 189 1.27e-15 78.6
Msa0555640 MtrunA17_Chr8g0346901 31.953 169 103 6 141 302 26 189 1.27e-15 78.6
Msa0555640 MtrunA17_Chr8g0346901 31.953 169 103 6 217 378 26 189 1.27e-15 78.6
Msa0555640 MtrunA17_Chr8g0346901 33.974 156 91 6 3 150 38 189 3.97e-15 77.0
Msa0555640 MtrunA17_Chr2g0322851 26.639 244 152 6 15 233 43 284 2.71e-15 75.9
Msa0555640 MtrunA17_Chr2g0322851 26.522 230 144 5 167 373 43 270 9.27e-15 73.9
Msa0555640 MtrunA17_Chr2g0322851 31.724 145 86 4 243 376 43 185 7.25e-11 62.4
Msa0555640 MtrunA17_Chr3g0126781 32.484 157 102 4 148 301 22 177 3.49e-15 77.0
Msa0555640 MtrunA17_Chr3g0126781 32.484 157 102 4 224 377 22 177 3.49e-15 77.0
Msa0555640 MtrunA17_Chr3g0126781 33.562 146 94 3 7 149 32 177 5.19e-15 76.6
Msa0555640 MtrunA17_Chr7g0275661 32.278 158 100 5 1 152 37 193 4.73e-14 73.6
Msa0555640 MtrunA17_Chr7g0275661 32.278 158 100 5 77 228 37 193 4.73e-14 73.6
Msa0555640 MtrunA17_Chr7g0275661 32.278 158 100 5 153 304 37 193 4.73e-14 73.6
Msa0555640 MtrunA17_Chr7g0275661 32.278 158 100 5 229 380 37 193 4.73e-14 73.6
Msa0555640 MtrunA17_Chr5g0433711 56.452 62 27 0 13 74 2 63 1.17e-13 65.5
Msa0555640 MtrunA17_Chr5g0433711 56.452 62 27 0 89 150 2 63 1.17e-13 65.5
Msa0555640 MtrunA17_Chr5g0433711 56.452 62 27 0 165 226 2 63 1.17e-13 65.5
Msa0555640 MtrunA17_Chr5g0433711 56.452 62 27 0 241 302 2 63 1.17e-13 65.5
Msa0555640 MtrunA17_Chr5g0433711 56.452 62 27 0 317 378 2 63 1.17e-13 65.5
Msa0555640 MtrunA17_Chr5g0433391 50.000 74 36 1 1 73 8 81 7.55e-13 63.9
Msa0555640 MtrunA17_Chr5g0433391 50.000 74 36 1 77 149 8 81 7.55e-13 63.9
Msa0555640 MtrunA17_Chr5g0433391 50.000 74 36 1 153 225 8 81 7.55e-13 63.9
Msa0555640 MtrunA17_Chr5g0433391 50.000 74 36 1 229 301 8 81 7.55e-13 63.9
Msa0555640 MtrunA17_Chr5g0433391 50.000 74 36 1 305 377 8 81 7.55e-13 63.9
Msa0555640 MtrunA17_Chr5g0433381 52.000 75 34 2 1 73 9 83 3.90e-12 62.0
Msa0555640 MtrunA17_Chr5g0433381 52.000 75 34 2 77 149 9 83 3.90e-12 62.0
Msa0555640 MtrunA17_Chr5g0433381 52.000 75 34 2 153 225 9 83 3.90e-12 62.0
Msa0555640 MtrunA17_Chr5g0433381 52.000 75 34 2 229 301 9 83 3.90e-12 62.0
Msa0555640 MtrunA17_Chr5g0433381 52.000 75 34 2 305 377 9 83 3.90e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555640 AT4G05320.1 100.000 381 0 0 1 381 1 381 0.0 753
Msa0555640 AT4G05320.6 100.000 381 0 0 1 381 1 381 0.0 753
Msa0555640 AT4G05320.2 100.000 381 0 0 1 381 77 457 0.0 753
Msa0555640 AT4G05320.2 99.738 381 1 0 1 381 1 381 0.0 751
Msa0555640 AT4G05320.3 100.000 381 0 0 1 381 1 381 0.0 753
Msa0555640 AT4G05320.4 100.000 381 0 0 1 381 77 457 0.0 753
Msa0555640 AT4G05320.4 99.738 381 1 0 1 381 1 381 0.0 751
Msa0555640 AT5G20620.1 100.000 380 0 0 1 380 1 380 0.0 751
Msa0555640 AT4G05320.5 100.000 305 0 0 77 381 1 305 0.0 604
Msa0555640 AT4G05320.5 99.672 305 1 0 1 305 1 305 0.0 602
Msa0555640 AT4G05320.8 100.000 305 0 0 77 381 1 305 0.0 604
Msa0555640 AT4G05320.8 99.672 305 1 0 1 305 1 305 0.0 602
Msa0555640 AT4G02890.3 100.000 305 0 0 77 381 1 305 0.0 604
Msa0555640 AT4G02890.3 99.672 305 1 0 1 305 1 305 0.0 602
Msa0555640 AT4G02890.4 100.000 305 0 0 77 381 1 305 0.0 604
Msa0555640 AT4G02890.4 99.672 305 1 0 1 305 1 305 0.0 602
Msa0555640 AT5G03240.3 100.000 304 0 0 1 304 1 304 0.0 602
Msa0555640 AT5G03240.3 100.000 304 0 0 77 380 1 304 0.0 602
Msa0555640 AT5G03240.2 100.000 304 0 0 1 304 1 304 0.0 602
Msa0555640 AT5G03240.2 100.000 304 0 0 77 380 1 304 0.0 602
Msa0555640 AT5G03240.1 100.000 304 0 0 1 304 1 304 0.0 602
Msa0555640 AT5G03240.1 100.000 304 0 0 77 380 1 304 0.0 602
Msa0555640 AT5G20620.2 100.000 304 0 0 1 304 1 304 0.0 602
Msa0555640 AT5G20620.2 100.000 304 0 0 77 380 1 304 0.0 602
Msa0555640 AT1G65350.1 93.711 318 5 2 1 304 1 317 0.0 570
Msa0555640 AT1G65350.1 93.711 318 5 2 77 380 1 317 0.0 570
Msa0555640 AT3G09790.2 78.149 389 71 4 1 375 3 391 0.0 567
Msa0555640 AT3G09790.2 74.619 394 82 5 1 380 79 468 0.0 541
Msa0555640 AT3G09790.2 71.939 392 92 4 1 378 238 625 5.56e-179 512
Msa0555640 AT3G09790.2 69.327 401 98 6 1 380 155 551 5.18e-174 499
Msa0555640 AT3G09790.2 89.474 152 16 0 229 380 3 154 1.70e-83 267
Msa0555640 AT3G09790.1 78.149 389 71 4 1 375 3 391 0.0 567
Msa0555640 AT3G09790.1 74.619 394 82 5 1 380 79 468 0.0 541
Msa0555640 AT3G09790.1 71.939 392 92 4 1 378 238 625 5.56e-179 512
Msa0555640 AT3G09790.1 69.327 401 98 6 1 380 155 551 5.18e-174 499
Msa0555640 AT3G09790.1 89.474 152 16 0 229 380 3 154 1.70e-83 267
Msa0555640 AT5G37640.1 90.196 306 29 1 76 380 2 307 0.0 538
Msa0555640 AT5G37640.1 90.492 305 28 1 1 304 3 307 0.0 538
Msa0555640 AT4G02890.2 100.000 229 0 0 153 381 1 229 1.42e-162 455
Msa0555640 AT4G02890.2 99.563 229 1 0 1 229 1 229 1.56e-161 452
Msa0555640 AT4G02890.2 99.563 229 1 0 77 305 1 229 1.56e-161 452
Msa0555640 AT4G02890.1 100.000 229 0 0 153 381 1 229 1.42e-162 455
Msa0555640 AT4G02890.1 99.563 229 1 0 1 229 1 229 1.56e-161 452
Msa0555640 AT4G02890.1 99.563 229 1 0 77 305 1 229 1.56e-161 452
Msa0555640 AT4G05050.2 100.000 229 0 0 153 381 1 229 1.42e-162 455
Msa0555640 AT4G05050.2 99.563 229 1 0 1 229 1 229 1.56e-161 452
Msa0555640 AT4G05050.2 99.563 229 1 0 77 305 1 229 1.56e-161 452
Msa0555640 AT4G05050.1 100.000 229 0 0 153 381 1 229 1.42e-162 455
Msa0555640 AT4G05050.1 99.563 229 1 0 1 229 1 229 1.56e-161 452
Msa0555640 AT4G05050.1 99.563 229 1 0 77 305 1 229 1.56e-161 452
Msa0555640 AT4G05050.3 100.000 229 0 0 153 381 1 229 1.42e-162 455
Msa0555640 AT4G05050.3 99.563 229 1 0 1 229 1 229 1.56e-161 452
Msa0555640 AT4G05050.3 99.563 229 1 0 77 305 1 229 1.56e-161 452
Msa0555640 AT1G55060.1 94.298 228 13 0 1 228 1 228 3.14e-152 429
Msa0555640 AT1G55060.1 94.298 228 13 0 77 304 1 228 3.14e-152 429
Msa0555640 AT1G55060.1 94.298 228 13 0 153 380 1 228 3.14e-152 429
Msa0555640 AT4G05320.7 100.000 153 0 0 229 381 1 153 8.41e-105 305
Msa0555640 AT4G05320.7 99.346 153 1 0 1 153 1 153 8.88e-104 303
Msa0555640 AT4G05320.7 99.346 153 1 0 77 229 1 153 8.88e-104 303
Msa0555640 AT4G05320.7 99.346 153 1 0 153 305 1 153 8.88e-104 303
Msa0555640 AT4G05050.4 100.000 153 0 0 229 381 1 153 8.41e-105 305
Msa0555640 AT4G05050.4 99.346 153 1 0 1 153 1 153 8.88e-104 303
Msa0555640 AT4G05050.4 99.346 153 1 0 77 229 1 153 8.88e-104 303
Msa0555640 AT4G05050.4 99.346 153 1 0 153 305 1 153 8.88e-104 303
Msa0555640 AT1G31340.1 81.046 153 29 0 229 381 1 153 1.05e-82 249
Msa0555640 AT1G31340.1 78.846 156 33 0 1 156 1 156 1.09e-81 247
Msa0555640 AT1G31340.1 78.846 156 33 0 77 232 1 156 1.09e-81 247
Msa0555640 AT1G31340.1 78.846 156 33 0 153 308 1 156 1.09e-81 247
Msa0555640 AT2G35635.1 79.739 153 31 0 1 153 1 153 6.24e-81 244
Msa0555640 AT2G35635.1 79.739 153 31 0 77 229 1 153 6.24e-81 244
Msa0555640 AT2G35635.1 79.739 153 31 0 153 305 1 153 6.24e-81 244
Msa0555640 AT2G35635.1 79.739 153 31 0 229 381 1 153 8.83e-81 244
Msa0555640 AT2G36170.1 98.701 77 1 0 1 77 1 77 6.08e-47 156
Msa0555640 AT2G36170.1 98.701 77 1 0 77 153 1 77 6.08e-47 156
Msa0555640 AT2G36170.1 98.701 77 1 0 153 229 1 77 6.08e-47 156
Msa0555640 AT2G36170.1 98.701 77 1 0 229 305 1 77 6.08e-47 156
Msa0555640 AT2G36170.1 98.701 77 1 0 305 381 1 77 7.53e-47 156
Msa0555640 AT3G52590.1 98.701 77 1 0 1 77 1 77 6.08e-47 156
Msa0555640 AT3G52590.1 98.701 77 1 0 77 153 1 77 6.08e-47 156
Msa0555640 AT3G52590.1 98.701 77 1 0 153 229 1 77 6.08e-47 156
Msa0555640 AT3G52590.1 98.701 77 1 0 229 305 1 77 6.08e-47 156
Msa0555640 AT3G52590.1 98.701 77 1 0 305 381 1 77 7.53e-47 156
Msa0555640 AT2G47110.2 97.436 78 2 0 1 78 1 78 2.16e-46 156
Msa0555640 AT2G47110.2 97.436 78 2 0 77 154 1 78 2.16e-46 156
Msa0555640 AT2G47110.2 97.436 78 2 0 153 230 1 78 2.16e-46 156
Msa0555640 AT2G47110.2 97.436 78 2 0 229 306 1 78 2.16e-46 156
Msa0555640 AT2G47110.2 100.000 76 0 0 305 380 1 76 2.50e-46 156
Msa0555640 AT2G47110.1 97.436 78 2 0 1 78 1 78 2.16e-46 156
Msa0555640 AT2G47110.1 97.436 78 2 0 77 154 1 78 2.16e-46 156
Msa0555640 AT2G47110.1 97.436 78 2 0 153 230 1 78 2.16e-46 156
Msa0555640 AT2G47110.1 97.436 78 2 0 229 306 1 78 2.16e-46 156
Msa0555640 AT2G47110.1 100.000 76 0 0 305 380 1 76 2.50e-46 156
Msa0555640 AT3G62250.1 97.436 78 2 0 1 78 1 78 2.25e-46 156
Msa0555640 AT3G62250.1 97.436 78 2 0 77 154 1 78 2.25e-46 156
Msa0555640 AT3G62250.1 97.436 78 2 0 153 230 1 78 2.25e-46 156
Msa0555640 AT3G62250.1 97.436 78 2 0 229 306 1 78 2.25e-46 156
Msa0555640 AT3G62250.1 100.000 76 0 0 305 380 1 76 2.67e-46 156
Msa0555640 AT1G23410.1 100.000 76 0 0 1 76 1 76 4.60e-46 155
Msa0555640 AT1G23410.1 100.000 76 0 0 77 152 1 76 4.60e-46 155
Msa0555640 AT1G23410.1 100.000 76 0 0 153 228 1 76 4.60e-46 155
Msa0555640 AT1G23410.1 100.000 76 0 0 229 304 1 76 4.60e-46 155
Msa0555640 AT1G23410.1 100.000 76 0 0 305 380 1 76 4.60e-46 155
Msa0555640 AT1G53930.1 49.091 165 54 7 8 149 1 158 4.52e-33 121
Msa0555640 AT1G53930.1 49.091 165 54 7 84 225 1 158 4.52e-33 121
Msa0555640 AT1G53930.1 49.091 165 54 7 160 301 1 158 4.52e-33 121
Msa0555640 AT1G53930.1 49.091 165 54 7 236 377 1 158 4.52e-33 121
Msa0555640 AT1G53930.1 75.342 73 18 0 1 73 86 158 3.14e-30 114
Msa0555640 AT1G53950.1 41.463 164 55 3 71 227 14 143 6.15e-26 102
Msa0555640 AT1G53950.1 41.463 164 55 3 147 303 14 143 6.15e-26 102
Msa0555640 AT1G53950.1 41.463 164 55 3 223 379 14 143 6.15e-26 102
Msa0555640 AT1G53950.1 43.038 158 49 3 1 151 20 143 1.13e-25 101
Msa0555640 AT1G11980.1 54.545 77 35 0 1 77 1 77 3.79e-22 89.7
Msa0555640 AT1G11980.1 54.545 77 35 0 77 153 1 77 3.79e-22 89.7
Msa0555640 AT1G11980.1 54.545 77 35 0 153 229 1 77 3.79e-22 89.7
Msa0555640 AT1G11980.1 54.545 77 35 0 229 305 1 77 3.79e-22 89.7
Msa0555640 AT1G11980.1 54.545 77 35 0 305 381 1 77 3.98e-22 89.7
Msa0555640 AT2G46500.3 35.862 145 90 2 7 148 40 184 8.90e-19 87.8
Msa0555640 AT2G46500.3 35.862 145 90 2 159 300 40 184 8.90e-19 87.8
Msa0555640 AT2G46500.3 35.862 145 90 2 235 376 40 184 8.90e-19 87.8
Msa0555640 AT2G46500.1 35.862 145 90 2 7 148 40 184 1.45e-18 87.8
Msa0555640 AT2G46500.1 35.862 145 90 2 159 300 40 184 1.45e-18 87.8
Msa0555640 AT2G46500.1 35.862 145 90 2 235 376 40 184 1.45e-18 87.8
Msa0555640 AT2G46500.2 35.862 145 90 2 7 148 40 184 1.45e-18 87.8
Msa0555640 AT2G46500.2 35.862 145 90 2 159 300 40 184 1.45e-18 87.8
Msa0555640 AT2G46500.2 35.862 145 90 2 235 376 40 184 1.45e-18 87.8
Msa0555640 AT1G53945.1 38.356 146 53 3 1 143 1 112 4.63e-17 77.0
Msa0555640 AT1G53945.1 38.356 146 53 3 77 219 1 112 4.63e-17 77.0
Msa0555640 AT1G53945.1 38.356 146 53 3 153 295 1 112 4.63e-17 77.0
Msa0555640 AT1G53945.1 38.356 146 53 3 229 371 1 112 4.63e-17 77.0
Msa0555640 AT5G24240.1 33.793 145 91 3 7 147 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.1 33.793 145 91 3 83 223 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.1 33.793 145 91 3 159 299 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.1 33.793 145 91 3 235 375 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.2 33.793 145 91 3 7 147 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.2 33.793 145 91 3 83 223 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.2 33.793 145 91 3 159 299 38 181 3.21e-13 71.6
Msa0555640 AT5G24240.2 33.793 145 91 3 235 375 38 181 3.21e-13 71.6

Find 112 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCCTCCAATTGCTTTC+CGG 0.228225 4_1:+53661516 None:intergenic
AATGGAGAGTGGACTCCTTC+TGG 0.268827 4_1:+53661698 None:intergenic
ACCCTCTTTGTCCTGGATCT+TGG 0.274270 4_1:+53662026 None:intergenic
AAAATAAGCCTCTGCTGATC+TGG 0.304914 4_1:+53661313 None:intergenic
ACCCTCTTTGTCCTGAATCT+TGG 0.309404 4_1:+53662254 None:intergenic
CAGCAGAGGCTTATCTTTGC+AGG 0.323151 4_1:-53661991 Msa0555640:CDS
ATATTTGTGAAGACACTTAC+TGG 0.340523 4_1:-53661418 Msa0555640:CDS
CAGCAGAGGCTTATCTTTGC+TGG 0.346608 4_1:-53662219 Msa0555640:CDS
AATGCAAAGTAGATTCCTTC+TGG 0.349783 4_1:+53661470 None:intergenic
TAATGTCAAGGCCAAGATTC+AGG 0.350237 4_1:-53662265 Msa0555640:CDS
GAAGGAATCTACTTTGCATT+TGG 0.357379 4_1:-53661467 Msa0555640:CDS
CAACAGAGGCTTATCTTTGC+TGG 0.365781 4_1:-53661763 Msa0555640:CDS
AATGAAGGGTAGATTCCTTC+TGG 0.382623 4_1:+53662154 None:intergenic
TACTGGGAAGACTATTACCT+TGG 0.388796 4_1:-53661401 Msa0555640:CDS
GACGGGAAAGACTATTACTT+TGG 0.390154 4_1:-53661857 Msa0555640:CDS
AATGAAGGGTGGATTCCTTC+TGG 0.393830 4_1:+53661926 None:intergenic
GAAGGAATCCACCCTTCATT+TGG 0.394555 4_1:-53661923 Msa0555640:CDS
AAGATAAGCCTCTGCTGATC+AGG 0.398269 4_1:+53662225 None:intergenic
AAGATAAGCCTCTGCTGATC+AGG 0.404708 4_1:+53661997 None:intergenic
GAAGGAGTCCACTCTCCATT+TGG 0.412689 4_1:-53661695 Msa0555640:CDS
GAAGGAATCTACCCTTCATT+TGG 0.416312 4_1:-53662151 Msa0555640:CDS
AAGTTATGGTCTTTCCAGTA+AGG 0.441016 4_1:+53661632 None:intergenic
GTGGGATACCCTCTTTGTCC+TGG 0.442832 4_1:+53662019 None:intergenic
AAAATTAGTCTCTGCTGGTC+TGG 0.443739 4_1:+53661541 None:intergenic
AAGATAAGCCTCTGTTGATC+AGG 0.445382 4_1:+53661769 None:intergenic
TACTGGAAAGACCATAACTT+TGG 0.449612 4_1:-53661629 Msa0555640:CDS
TCAATCTAAGCACCAAATGA+AGG 0.460679 4_1:+53661911 None:intergenic
CTTGGCCTTGACATTATCAA+TGG 0.462747 4_1:+53662044 None:intergenic
AAATAAGCCTCTGCTGATCT+GGG 0.465164 4_1:+53661314 None:intergenic
TGGAAAGACCATAACTTTGG+AGG 0.467201 4_1:-53661626 Msa0555640:CDS
TCAATCTAAGCACCAAATGA+AGG 0.467207 4_1:+53662139 None:intergenic
CACCCTAGAGGTTGAATCCT+CGG 0.468211 4_1:-53662070 Msa0555640:CDS
ACTCTCAACCTCCAAAGTTA+TGG 0.478982 4_1:+53661618 None:intergenic
CATTTGGTGCTTAGATTGAG+AGG 0.480984 4_1:-53661907 Msa0555640:CDS
CATTTGGTGCTTAGATTGAG+AGG 0.480984 4_1:-53662135 Msa0555640:CDS
CACCCTTGAGGTGGAATCAT+CGG 0.482660 4_1:-53662298 Msa0555640:CDS
CACGAAGCCTCAAAACCAAA+TGG 0.484478 4_1:+53661680 None:intergenic
GCTGGTAAGCAGCTTGAAGA+TGG 0.486852 4_1:-53661745 Msa0555640:CDS
ATTGGAGGATGGTCGTACTT+TGG 0.488133 4_1:-53661506 Msa0555640:CDS
TCTGGATGTTATAATCAGCT+AGG 0.489504 4_1:+53662172 None:intergenic
ATCTTTGTGAAAACATTGAC+TGG 0.491047 4_1:-53662330 Msa0555640:CDS
AGCAGAGGCTTATCTTTGCT+GGG 0.491816 4_1:-53662218 Msa0555640:CDS
ATATTCGTTAAGACTTTGAC+CGG 0.492140 4_1:-53662102 Msa0555640:CDS
GGGAAAGACTATTACTTTGG+AGG 0.502909 4_1:-53661854 Msa0555640:CDS
TCTGGATGTTATAATCAGCT+AGG 0.505255 4_1:+53661944 None:intergenic
TGGGAAGACTATTACCTTGG+AGG 0.507917 4_1:-53661398 Msa0555640:CDS
GAAAGCTAAGATTCAAGATA+AGG 0.516683 4_1:-53661803 Msa0555640:CDS
TAATGTCAAGGCCAAGATCC+AGG 0.518614 4_1:-53662037 Msa0555640:CDS
AAAGACTATTACTTTGGAGG+TGG 0.523715 4_1:-53661851 Msa0555640:CDS
TGATTCCACCTCAAGGGTGA+TGG 0.524625 4_1:+53662302 None:intergenic
GCTGGCAAGCAGTTGGAGGA+TGG 0.535241 4_1:-53661289 Msa0555640:CDS
GTTGGAGGATGGTCGTACTC+TGG 0.539382 4_1:-53661278 Msa0555640:CDS
GCAGGGAAACAACTAGAAGA+TGG 0.551920 4_1:-53661973 Msa0555640:CDS
TATCCGAGGATTCAACCTCT+AGG 0.556980 4_1:+53662067 None:intergenic
AGCTAAGATTCAAGATAAGG+AGG 0.557195 4_1:-53661800 Msa0555640:CDS
GCCGGAAAGCAATTGGAGGA+TGG 0.558534 4_1:-53661517 Msa0555640:CDS
AGCAAAGATACAAGATAAGG+AGG 0.559260 4_1:-53661344 Msa0555640:CDS
CTGGATGTTATAATCAGCTA+GGG 0.560371 4_1:+53662173 None:intergenic
AGTTATGGTCTTTCCAGTAA+GGG 0.561057 4_1:+53661633 None:intergenic
GAAAGCAAAGATACAAGATA+AGG 0.565523 4_1:-53661347 Msa0555640:CDS
ATCCGAGGATTCAACCTCTA+GGG 0.568186 4_1:+53662068 None:intergenic
AGCAGAGGCTTATCTTTGCA+GGG 0.572317 4_1:-53661990 Msa0555640:CDS
CTTGTTCTTCGTCTCCGTGG+TGG 0.572507 4_1:-53661220 Msa0555640:CDS
GAAGACTATTACCTTGGAGG+TGG 0.573223 4_1:-53661395 Msa0555640:CDS
GCTGGGAAACAACTCGAGGA+TGG 0.573656 4_1:-53662201 Msa0555640:CDS
GGATTCAACCTCTAGGGTGA+TGG 0.575072 4_1:+53662074 None:intergenic
ATAAGCCTCTGCTGATCAGG+TGG 0.575147 4_1:+53662000 None:intergenic
GACATTATCAATGGTATCCG+AGG 0.576477 4_1:+53662053 None:intergenic
GGAGACGAAGAACAAGATGC+AGG 0.577541 4_1:+53661227 None:intergenic
ATAAGCCTCTGCTGATCAGG+AGG 0.578405 4_1:+53662228 None:intergenic
TATTTGTGAAGACACTTACT+GGG 0.579572 4_1:-53661417 Msa0555640:CDS
ATCAGAGCTTTCCACCTCCA+AGG 0.582807 4_1:+53661384 None:intergenic
GTAAGCAGCTTGAAGATGGA+AGG 0.583523 4_1:-53661741 Msa0555640:CDS
CAATCTAAGCACCAAATGAA+GGG 0.584307 4_1:+53662140 None:intergenic
ATTAGTCTCTGCTGGTCTGG+AGG 0.592481 4_1:+53661544 None:intergenic
CAATCTAAGCACCAAATGAA+GGG 0.592660 4_1:+53661912 None:intergenic
CTGGATGTTATAATCAGCTA+GGG 0.596159 4_1:+53661945 None:intergenic
TATCCGATGATTCCACCTCA+AGG 0.598701 4_1:+53662295 None:intergenic
ATAAGCCTCTGTTGATCAGG+AGG 0.599594 4_1:+53661772 None:intergenic
CAAAACCATCACCCTTGAGG+TGG 0.600034 4_1:-53662307 Msa0555640:CDS
CATCTTGTTCTTCGTCTCCG+TGG 0.603344 4_1:-53661223 Msa0555640:CDS
ATAAGCCTCTGCTGATCTGG+GGG 0.604365 4_1:+53661316 None:intergenic
TGATACAATTGATAATGTGA+AGG 0.606617 4_1:-53661593 Msa0555640:CDS
GCTAAGATTCAAGATAAGGA+GGG 0.608071 4_1:-53661799 Msa0555640:CDS
GGCCAAGATTCAGGACAAAG+AGG 0.609724 4_1:-53662256 Msa0555640:CDS
AATAAGCCTCTGCTGATCTG+GGG 0.611344 4_1:+53661315 None:intergenic
CCTCAAAACCAAATGGAGAG+TGG 0.612767 4_1:+53661687 None:intergenic
GGCCAAGATCCAGGACAAAG+AGG 0.613915 4_1:-53662028 Msa0555640:CDS
GCCAAGATCCAGGACAAAGA+GGG 0.620887 4_1:-53662027 Msa0555640:CDS
GCCAAGATTCAGGACAAAGA+GGG 0.620887 4_1:-53662255 Msa0555640:CDS
GCAAAGATACAAGATAAGGA+GGG 0.621833 4_1:-53661343 Msa0555640:CDS
GGAAACAACTAGAAGATGGA+AGG 0.625020 4_1:-53661969 Msa0555640:CDS
GGATACAATTGATAATGTCA+AGG 0.626130 4_1:-53662277 Msa0555640:CDS
GGCTGATTATAATATCCAGA+AGG 0.627715 4_1:-53661485 Msa0555640:CDS
TTGGTGCTTAGATTGAGAGG+TGG 0.628688 4_1:-53661904 Msa0555640:CDS
TTGGTGCTTAGATTGAGAGG+TGG 0.628688 4_1:-53662132 Msa0555640:CDS
ATCCGATGATTCCACCTCAA+GGG 0.629259 4_1:+53662296 None:intergenic
GGATACCATTGATAATGTCA+AGG 0.634466 4_1:-53662049 Msa0555640:CDS
TAAGCCTCTGTTGATCAGGA+GGG 0.648113 4_1:+53661773 None:intergenic
TGGCAAAACCATCACCCTTG+AGG 0.648872 4_1:-53662310 Msa0555640:CDS
TCTAAGCACCAAATGAAGGG+TGG 0.651428 4_1:+53661915 None:intergenic
GTATCCCTCCTGATCAGCAG+AGG 0.654458 4_1:-53662233 Msa0555640:CDS
CTTTGCTGGGAAACAACTCG+AGG 0.660573 4_1:-53662205 Msa0555640:CDS
TAAGCCTCTGCTGATCAGGA+GGG 0.663439 4_1:+53662229 None:intergenic
GTATCCCACCTGATCAGCAG+AGG 0.664066 4_1:-53662005 Msa0555640:CDS
GAGACGAAGAACAAGATGCA+GGG 0.665092 4_1:+53661228 None:intergenic
TAAGCCTCTGCTGATCAGGT+GGG 0.669417 4_1:+53662001 None:intergenic
TGCTGATTATAACATCCAGA+AGG 0.676201 4_1:-53661713 Msa0555640:CDS
AGCTGATTATAACATCCAGA+AGG 0.677696 4_1:-53661941 Msa0555640:CDS
AGCTGATTATAACATCCAGA+AGG 0.677696 4_1:-53662169 Msa0555640:CDS
AACACACTTAGAAGCCACCA+CGG 0.699059 4_1:+53661206 None:intergenic
GTATCCCTCCTGATCAACAG+AGG 0.704804 4_1:-53661777 Msa0555640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATACAATTGATAATGTGA+AGG - chr4_1:53661956-53661975 Msa0555640:CDS 25.0%
!!! TGATACAATTGATAATGTGA+AGG - chr4_1:53661956-53661975 Msa0555640:CDS 25.0%
ATCTTTGTGAAAACATTGAC+TGG - chr4_1:53661219-53661238 Msa0555640:CDS 30.0%
!! GGATACAATTGATAATGTCA+AGG - chr4_1:53661272-53661291 Msa0555640:CDS 30.0%
ATATTCGTTAAGACTTTGAC+CGG - chr4_1:53661447-53661466 Msa0555640:CDS 30.0%
! GATTTTTGTGAAGACTTTGA+CGG - chr4_1:53661674-53661693 Msa0555640:CDS 30.0%
! ATTTTTGTGAAGACTTTGAC+GGG - chr4_1:53661675-53661694 Msa0555640:CDS 30.0%
GAAAGCTAAGATTCAAGATA+AGG - chr4_1:53661746-53661765 Msa0555640:CDS 30.0%
! ATTTTTGTTAAGACCCTTAC+TGG - chr4_1:53661903-53661922 Msa0555640:CDS 30.0%
TAATGTGAAGGCAAAAATTC+AGG - chr4_1:53661968-53661987 Msa0555640:CDS 30.0%
GCAAAAATTCAGGATAAAGA+GGG - chr4_1:53661978-53661997 Msa0555640:CDS 30.0%
ATATTTGTGAAGACACTTAC+TGG - chr4_1:53662131-53662150 Msa0555640:CDS 30.0%
TATTTGTGAAGACACTTACT+GGG - chr4_1:53662132-53662151 Msa0555640:CDS 30.0%
GAAAGCAAAGATACAAGATA+AGG - chr4_1:53662202-53662221 Msa0555640:CDS 30.0%
ATCTTTGTGAAAACATTGAC+TGG - chr4_1:53661219-53661238 Msa0555640:CDS 30.0%
!! GGATACAATTGATAATGTCA+AGG - chr4_1:53661272-53661291 Msa0555640:CDS 30.0%
ATATTCGTTAAGACTTTGAC+CGG - chr4_1:53661447-53661466 Msa0555640:CDS 30.0%
! GATTTTTGTGAAGACTTTGA+CGG - chr4_1:53661674-53661693 Msa0555640:CDS 30.0%
! ATTTTTGTGAAGACTTTGAC+GGG - chr4_1:53661675-53661694 Msa0555640:CDS 30.0%
GAAAGCTAAGATTCAAGATA+AGG - chr4_1:53661746-53661765 Msa0555640:CDS 30.0%
! ATTTTTGTTAAGACCCTTAC+TGG - chr4_1:53661903-53661922 Msa0555640:CDS 30.0%
TAATGTGAAGGCAAAAATTC+AGG - chr4_1:53661968-53661987 Msa0555640:CDS 30.0%
GCAAAAATTCAGGATAAAGA+GGG - chr4_1:53661978-53661997 Msa0555640:CDS 30.0%
ATATTTGTGAAGACACTTAC+TGG - chr4_1:53662131-53662150 Msa0555640:CDS 30.0%
TATTTGTGAAGACACTTACT+GGG - chr4_1:53662132-53662151 Msa0555640:CDS 30.0%
GAAAGCAAAGATACAAGATA+AGG - chr4_1:53662202-53662221 Msa0555640:CDS 30.0%
CTGGATGTTATAATCAGCTA+GGG + chr4_1:53661379-53661398 None:intergenic 35.0%
TCTGGATGTTATAATCAGCT+AGG + chr4_1:53661380-53661399 None:intergenic 35.0%
AGCTGATTATAACATCCAGA+AGG - chr4_1:53661380-53661399 Msa0555640:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + chr4_1:53661412-53661431 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + chr4_1:53661413-53661432 None:intergenic 35.0%
!! GGATACCATTGATAATGTCA+AGG - chr4_1:53661500-53661519 Msa0555640:CDS 35.0%
CTGGATGTTATAATCAGCTA+GGG + chr4_1:53661379-53661398 None:intergenic 35.0%
TCTGGATGTTATAATCAGCT+AGG + chr4_1:53661380-53661399 None:intergenic 35.0%
AGCTGATTATAACATCCAGA+AGG - chr4_1:53661380-53661399 Msa0555640:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + chr4_1:53661412-53661431 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + chr4_1:53661413-53661432 None:intergenic 35.0%
! AAAGACTATTACTTTGGAGG+TGG - chr4_1:53661698-53661717 Msa0555640:CDS 35.0%
AGCTAAGATTCAAGATAAGG+AGG - chr4_1:53661749-53661768 Msa0555640:CDS 35.0%
GCTAAGATTCAAGATAAGGA+GGG - chr4_1:53661750-53661769 Msa0555640:CDS 35.0%
! TGCTGATTATAACATCCAGA+AGG - chr4_1:53661836-53661855 Msa0555640:CDS 35.0%
AGTTATGGTCTTTCCAGTAA+GGG + chr4_1:53661919-53661938 None:intergenic 35.0%
AAGTTATGGTCTTTCCAGTA+AGG + chr4_1:53661920-53661939 None:intergenic 35.0%
TACTGGAAAGACCATAACTT+TGG - chr4_1:53661920-53661939 Msa0555640:CDS 35.0%
GGCAAAAATTCAGGATAAAG+AGG - chr4_1:53661977-53661996 Msa0555640:CDS 35.0%
! AATTTTTGCCGGAAAGCAAT+TGG - chr4_1:53662025-53662044 Msa0555640:CDS 35.0%
GGCTGATTATAATATCCAGA+AGG - chr4_1:53662064-53662083 Msa0555640:CDS 35.0%
AATGCAAAGTAGATTCCTTC+TGG + chr4_1:53662082-53662101 None:intergenic 35.0%
GAAGGAATCTACTTTGCATT+TGG - chr4_1:53662082-53662101 Msa0555640:CDS 35.0%
!!! CTACTTTGCATTTGGTTTTG+AGG - chr4_1:53662090-53662109 Msa0555640:CDS 35.0%
AGCAAAGATACAAGATAAGG+AGG - chr4_1:53662205-53662224 Msa0555640:CDS 35.0%
GCAAAGATACAAGATAAGGA+GGG - chr4_1:53662206-53662225 Msa0555640:CDS 35.0%
CTGGATGTTATAATCAGCTA+GGG + chr4_1:53661379-53661398 None:intergenic 35.0%
TCTGGATGTTATAATCAGCT+AGG + chr4_1:53661380-53661399 None:intergenic 35.0%
AGCTGATTATAACATCCAGA+AGG - chr4_1:53661380-53661399 Msa0555640:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + chr4_1:53661412-53661431 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + chr4_1:53661413-53661432 None:intergenic 35.0%
!! GGATACCATTGATAATGTCA+AGG - chr4_1:53661500-53661519 Msa0555640:CDS 35.0%
CTGGATGTTATAATCAGCTA+GGG + chr4_1:53661379-53661398 None:intergenic 35.0%
TCTGGATGTTATAATCAGCT+AGG + chr4_1:53661380-53661399 None:intergenic 35.0%
AGCTGATTATAACATCCAGA+AGG - chr4_1:53661380-53661399 Msa0555640:CDS 35.0%
CAATCTAAGCACCAAATGAA+GGG + chr4_1:53661412-53661431 None:intergenic 35.0%
TCAATCTAAGCACCAAATGA+AGG + chr4_1:53661413-53661432 None:intergenic 35.0%
! AAAGACTATTACTTTGGAGG+TGG - chr4_1:53661698-53661717 Msa0555640:CDS 35.0%
AGCTAAGATTCAAGATAAGG+AGG - chr4_1:53661749-53661768 Msa0555640:CDS 35.0%
GCTAAGATTCAAGATAAGGA+GGG - chr4_1:53661750-53661769 Msa0555640:CDS 35.0%
! TGCTGATTATAACATCCAGA+AGG - chr4_1:53661836-53661855 Msa0555640:CDS 35.0%
AGTTATGGTCTTTCCAGTAA+GGG + chr4_1:53661919-53661938 None:intergenic 35.0%
AAGTTATGGTCTTTCCAGTA+AGG + chr4_1:53661920-53661939 None:intergenic 35.0%
TACTGGAAAGACCATAACTT+TGG - chr4_1:53661920-53661939 Msa0555640:CDS 35.0%
GGCAAAAATTCAGGATAAAG+AGG - chr4_1:53661977-53661996 Msa0555640:CDS 35.0%
! AATTTTTGCCGGAAAGCAAT+TGG - chr4_1:53662025-53662044 Msa0555640:CDS 35.0%
GGCTGATTATAATATCCAGA+AGG - chr4_1:53662064-53662083 Msa0555640:CDS 35.0%
AATGCAAAGTAGATTCCTTC+TGG + chr4_1:53662082-53662101 None:intergenic 35.0%
GAAGGAATCTACTTTGCATT+TGG - chr4_1:53662082-53662101 Msa0555640:CDS 35.0%
!!! CTACTTTGCATTTGGTTTTG+AGG - chr4_1:53662090-53662109 Msa0555640:CDS 35.0%
AGCAAAGATACAAGATAAGG+AGG - chr4_1:53662205-53662224 Msa0555640:CDS 35.0%
GCAAAGATACAAGATAAGGA+GGG - chr4_1:53662206-53662225 Msa0555640:CDS 35.0%
TAATGTCAAGGCCAAGATTC+AGG - chr4_1:53661284-53661303 Msa0555640:CDS 40.0%
AATGAAGGGTAGATTCCTTC+TGG + chr4_1:53661398-53661417 None:intergenic 40.0%
GAAGGAATCTACCCTTCATT+TGG - chr4_1:53661398-53661417 Msa0555640:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - chr4_1:53661414-53661433 Msa0555640:CDS 40.0%
GACATTATCAATGGTATCCG+AGG + chr4_1:53661499-53661518 None:intergenic 40.0%
!! CTTGGCCTTGACATTATCAA+TGG + chr4_1:53661280-53661299 None:intergenic 40.0%
GGAAACAACTAGAAGATGGA+AGG - chr4_1:53661580-53661599 Msa0555640:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - chr4_1:53661414-53661433 Msa0555640:CDS 40.0%
GACGGGAAAGACTATTACTT+TGG - chr4_1:53661692-53661711 Msa0555640:CDS 40.0%
GGGAAAGACTATTACTTTGG+AGG - chr4_1:53661695-53661714 Msa0555640:CDS 40.0%
AAGATAAGCCTCTGTTGATC+AGG + chr4_1:53661783-53661802 None:intergenic 40.0%
!!! ATTTGGTTTTGAGGCTTCGT+GGG - chr4_1:53661871-53661890 Msa0555640:CDS 40.0%
TGGAAAGACCATAACTTTGG+AGG - chr4_1:53661923-53661942 Msa0555640:CDS 40.0%
ACTCTCAACCTCCAAAGTTA+TGG + chr4_1:53661934-53661953 None:intergenic 40.0%
! AAAATTAGTCTCTGCTGGTC+TGG + chr4_1:53662011-53662030 None:intergenic 40.0%
! CAGCAGAGACTAATTTTTGC+CGG - chr4_1:53662014-53662033 Msa0555640:CDS 40.0%
TACTGGGAAGACTATTACCT+TGG - chr4_1:53662148-53662167 Msa0555640:CDS 40.0%
AAATAAGCCTCTGCTGATCT+GGG + chr4_1:53662238-53662257 None:intergenic 40.0%
AAAATAAGCCTCTGCTGATC+TGG + chr4_1:53662239-53662258 None:intergenic 40.0%
!! TATTTTTGCTGGCAAGCAGT+TGG - chr4_1:53662253-53662272 Msa0555640:CDS 40.0%
TAATGTCAAGGCCAAGATTC+AGG - chr4_1:53661284-53661303 Msa0555640:CDS 40.0%
AATGAAGGGTAGATTCCTTC+TGG + chr4_1:53661398-53661417 None:intergenic 40.0%
GAAGGAATCTACCCTTCATT+TGG - chr4_1:53661398-53661417 Msa0555640:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - chr4_1:53661414-53661433 Msa0555640:CDS 40.0%
GACATTATCAATGGTATCCG+AGG + chr4_1:53661499-53661518 None:intergenic 40.0%
!! CTTGGCCTTGACATTATCAA+TGG + chr4_1:53661280-53661299 None:intergenic 40.0%
GGAAACAACTAGAAGATGGA+AGG - chr4_1:53661580-53661599 Msa0555640:CDS 40.0%
!! CATTTGGTGCTTAGATTGAG+AGG - chr4_1:53661414-53661433 Msa0555640:CDS 40.0%
GACGGGAAAGACTATTACTT+TGG - chr4_1:53661692-53661711 Msa0555640:CDS 40.0%
GGGAAAGACTATTACTTTGG+AGG - chr4_1:53661695-53661714 Msa0555640:CDS 40.0%
AAGATAAGCCTCTGTTGATC+AGG + chr4_1:53661783-53661802 None:intergenic 40.0%
!!! ATTTGGTTTTGAGGCTTCGT+GGG - chr4_1:53661871-53661890 Msa0555640:CDS 40.0%
TGGAAAGACCATAACTTTGG+AGG - chr4_1:53661923-53661942 Msa0555640:CDS 40.0%
ACTCTCAACCTCCAAAGTTA+TGG + chr4_1:53661934-53661953 None:intergenic 40.0%
! AAAATTAGTCTCTGCTGGTC+TGG + chr4_1:53662011-53662030 None:intergenic 40.0%
! CAGCAGAGACTAATTTTTGC+CGG - chr4_1:53662014-53662033 Msa0555640:CDS 40.0%
TACTGGGAAGACTATTACCT+TGG - chr4_1:53662148-53662167 Msa0555640:CDS 40.0%
AAATAAGCCTCTGCTGATCT+GGG + chr4_1:53662238-53662257 None:intergenic 40.0%
AAAATAAGCCTCTGCTGATC+TGG + chr4_1:53662239-53662258 None:intergenic 40.0%
!! TATTTTTGCTGGCAAGCAGT+TGG - chr4_1:53662253-53662272 Msa0555640:CDS 40.0%
ATCCGATGATTCCACCTCAA+GGG + chr4_1:53661256-53661275 None:intergenic 45.0%
TATCCGATGATTCCACCTCA+AGG + chr4_1:53661257-53661276 None:intergenic 45.0%
GCCAAGATTCAGGACAAAGA+GGG - chr4_1:53661294-53661313 Msa0555640:CDS 45.0%
ACCCTCTTTGTCCTGAATCT+TGG + chr4_1:53661298-53661317 None:intergenic 45.0%
AAGATAAGCCTCTGCTGATC+AGG + chr4_1:53661327-53661346 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCT+GGG - chr4_1:53661331-53661350 Msa0555640:CDS 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - chr4_1:53661417-53661436 Msa0555640:CDS 45.0%
!!! CTCTAGGGTGATGGTTTTTC+CGG + chr4_1:53661469-53661488 None:intergenic 45.0%
ATCCGAGGATTCAACCTCTA+GGG + chr4_1:53661484-53661503 None:intergenic 45.0%
TATCCGAGGATTCAACCTCT+AGG + chr4_1:53661485-53661504 None:intergenic 45.0%
TAATGTCAAGGCCAAGATCC+AGG - chr4_1:53661512-53661531 Msa0555640:CDS 45.0%
AAGATAAGCCTCTGCTGATC+AGG + chr4_1:53661327-53661346 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCA+GGG - chr4_1:53661559-53661578 Msa0555640:CDS 45.0%
GCAGGGAAACAACTAGAAGA+TGG - chr4_1:53661576-53661595 Msa0555640:CDS 45.0%
! AATGAAGGGTGGATTCCTTC+TGG + chr4_1:53661626-53661645 None:intergenic 45.0%
GAAGGAATCCACCCTTCATT+TGG - chr4_1:53661626-53661645 Msa0555640:CDS 45.0%
TCTAAGCACCAAATGAAGGG+TGG + chr4_1:53661409-53661428 None:intergenic 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - chr4_1:53661417-53661436 Msa0555640:CDS 45.0%
TAAGCCTCTGTTGATCAGGA+GGG + chr4_1:53661779-53661798 None:intergenic 45.0%
ATAAGCCTCTGTTGATCAGG+AGG + chr4_1:53661780-53661799 None:intergenic 45.0%
CAACAGAGGCTTATCTTTGC+TGG - chr4_1:53661786-53661805 Msa0555640:CDS 45.0%
GTAAGCAGCTTGAAGATGGA+AGG - chr4_1:53661808-53661827 Msa0555640:CDS 45.0%
CCTCAAAACCAAATGGAGAG+TGG + chr4_1:53661865-53661884 None:intergenic 45.0%
!!! CCACTCTCCATTTGGTTTTG+AGG - chr4_1:53661862-53661881 Msa0555640:CDS 45.0%
CACGAAGCCTCAAAACCAAA+TGG + chr4_1:53661872-53661891 None:intergenic 45.0%
!!! CATTTGGTTTTGAGGCTTCG+TGG - chr4_1:53661870-53661889 Msa0555640:CDS 45.0%
!!! TTTGGTTTTGAGGCTTCGTG+GGG - chr4_1:53661872-53661891 Msa0555640:CDS 45.0%
! CGGCAAAAATTAGTCTCTGC+TGG + chr4_1:53662016-53662035 None:intergenic 45.0%
! TTTTGCCGGAAAGCAATTGG+AGG - chr4_1:53662028-53662047 Msa0555640:CDS 45.0%
ACCATCCTCCAATTGCTTTC+CGG + chr4_1:53662036-53662055 None:intergenic 45.0%
ATTGGAGGATGGTCGTACTT+TGG - chr4_1:53662043-53662062 Msa0555640:CDS 45.0%
!!! CATTTGGTTTTGAGGCTTCG+TGG - chr4_1:53661870-53661889 Msa0555640:CDS 45.0%
TGGGAAGACTATTACCTTGG+AGG - chr4_1:53662151-53662170 Msa0555640:CDS 45.0%
GAAGACTATTACCTTGGAGG+TGG - chr4_1:53662154-53662173 Msa0555640:CDS 45.0%
AATAAGCCTCTGCTGATCTG+GGG + chr4_1:53662237-53662256 None:intergenic 45.0%
!!! CAGCAGAGGCTTATTTTTGC+TGG - chr4_1:53662242-53662261 Msa0555640:CDS 45.0%
GAGACGAAGAACAAGATGCA+GGG + chr4_1:53662324-53662343 None:intergenic 45.0%
ATCCGATGATTCCACCTCAA+GGG + chr4_1:53661256-53661275 None:intergenic 45.0%
TATCCGATGATTCCACCTCA+AGG + chr4_1:53661257-53661276 None:intergenic 45.0%
GCCAAGATTCAGGACAAAGA+GGG - chr4_1:53661294-53661313 Msa0555640:CDS 45.0%
ACCCTCTTTGTCCTGAATCT+TGG + chr4_1:53661298-53661317 None:intergenic 45.0%
AAGATAAGCCTCTGCTGATC+AGG + chr4_1:53661327-53661346 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCT+GGG - chr4_1:53661331-53661350 Msa0555640:CDS 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - chr4_1:53661417-53661436 Msa0555640:CDS 45.0%
!!! CTCTAGGGTGATGGTTTTTC+CGG + chr4_1:53661469-53661488 None:intergenic 45.0%
ATCCGAGGATTCAACCTCTA+GGG + chr4_1:53661484-53661503 None:intergenic 45.0%
TATCCGAGGATTCAACCTCT+AGG + chr4_1:53661485-53661504 None:intergenic 45.0%
TAATGTCAAGGCCAAGATCC+AGG - chr4_1:53661512-53661531 Msa0555640:CDS 45.0%
AAGATAAGCCTCTGCTGATC+AGG + chr4_1:53661327-53661346 None:intergenic 45.0%
AGCAGAGGCTTATCTTTGCA+GGG - chr4_1:53661559-53661578 Msa0555640:CDS 45.0%
GCAGGGAAACAACTAGAAGA+TGG - chr4_1:53661576-53661595 Msa0555640:CDS 45.0%
! AATGAAGGGTGGATTCCTTC+TGG + chr4_1:53661626-53661645 None:intergenic 45.0%
GAAGGAATCCACCCTTCATT+TGG - chr4_1:53661626-53661645 Msa0555640:CDS 45.0%
TCTAAGCACCAAATGAAGGG+TGG + chr4_1:53661409-53661428 None:intergenic 45.0%
! TTGGTGCTTAGATTGAGAGG+TGG - chr4_1:53661417-53661436 Msa0555640:CDS 45.0%
TAAGCCTCTGTTGATCAGGA+GGG + chr4_1:53661779-53661798 None:intergenic 45.0%
ATAAGCCTCTGTTGATCAGG+AGG + chr4_1:53661780-53661799 None:intergenic 45.0%
CAACAGAGGCTTATCTTTGC+TGG - chr4_1:53661786-53661805 Msa0555640:CDS 45.0%
GTAAGCAGCTTGAAGATGGA+AGG - chr4_1:53661808-53661827 Msa0555640:CDS 45.0%
CCTCAAAACCAAATGGAGAG+TGG + chr4_1:53661865-53661884 None:intergenic 45.0%
!!! CCACTCTCCATTTGGTTTTG+AGG - chr4_1:53661862-53661881 Msa0555640:CDS 45.0%
CACGAAGCCTCAAAACCAAA+TGG + chr4_1:53661872-53661891 None:intergenic 45.0%
!!! CATTTGGTTTTGAGGCTTCG+TGG - chr4_1:53661870-53661889 Msa0555640:CDS 45.0%
!!! TTTGGTTTTGAGGCTTCGTG+GGG - chr4_1:53661872-53661891 Msa0555640:CDS 45.0%
! CGGCAAAAATTAGTCTCTGC+TGG + chr4_1:53662016-53662035 None:intergenic 45.0%
! TTTTGCCGGAAAGCAATTGG+AGG - chr4_1:53662028-53662047 Msa0555640:CDS 45.0%
ACCATCCTCCAATTGCTTTC+CGG + chr4_1:53662036-53662055 None:intergenic 45.0%
ATTGGAGGATGGTCGTACTT+TGG - chr4_1:53662043-53662062 Msa0555640:CDS 45.0%
!!! CATTTGGTTTTGAGGCTTCG+TGG - chr4_1:53661870-53661889 Msa0555640:CDS 45.0%
TGGGAAGACTATTACCTTGG+AGG - chr4_1:53662151-53662170 Msa0555640:CDS 45.0%
GAAGACTATTACCTTGGAGG+TGG - chr4_1:53662154-53662173 Msa0555640:CDS 45.0%
AATAAGCCTCTGCTGATCTG+GGG + chr4_1:53662237-53662256 None:intergenic 45.0%
!!! CAGCAGAGGCTTATTTTTGC+TGG - chr4_1:53662242-53662261 Msa0555640:CDS 45.0%
GAGACGAAGAACAAGATGCA+GGG + chr4_1:53662324-53662343 None:intergenic 45.0%
TGGCAAAACCATCACCCTTG+AGG - chr4_1:53661239-53661258 Msa0555640:CDS 50.0%
CAAAACCATCACCCTTGAGG+TGG - chr4_1:53661242-53661261 Msa0555640:CDS 50.0%
TGATTCCACCTCAAGGGTGA+TGG + chr4_1:53661250-53661269 None:intergenic 50.0%
CACCCTTGAGGTGGAATCAT+CGG - chr4_1:53661251-53661270 Msa0555640:CDS 50.0%
GGCCAAGATTCAGGACAAAG+AGG - chr4_1:53661293-53661312 Msa0555640:CDS 50.0%
TAAGCCTCTGCTGATCAGGA+GGG + chr4_1:53661323-53661342 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+AGG + chr4_1:53661324-53661343 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+TGG - chr4_1:53661330-53661349 Msa0555640:CDS 50.0%
CTTTGCTGGGAAACAACTCG+AGG - chr4_1:53661344-53661363 Msa0555640:CDS 50.0%
CGGAAAAACCATCACCCTAG+AGG - chr4_1:53661467-53661486 Msa0555640:CDS 50.0%
!! GGATTCAACCTCTAGGGTGA+TGG + chr4_1:53661478-53661497 None:intergenic 50.0%
CACCCTAGAGGTTGAATCCT+CGG - chr4_1:53661479-53661498 Msa0555640:CDS 50.0%
GCCAAGATCCAGGACAAAGA+GGG - chr4_1:53661522-53661541 Msa0555640:CDS 50.0%
ACCCTCTTTGTCCTGGATCT+TGG + chr4_1:53661526-53661545 None:intergenic 50.0%
TAAGCCTCTGCTGATCAGGT+GGG + chr4_1:53661551-53661570 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+TGG + chr4_1:53661324-53661343 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+AGG - chr4_1:53661330-53661349 Msa0555640:CDS 50.0%
GTATCCCTCCTGATCAACAG+AGG - chr4_1:53661772-53661791 Msa0555640:CDS 50.0%
GCTGGTAAGCAGCTTGAAGA+TGG - chr4_1:53661804-53661823 Msa0555640:CDS 50.0%
! AATGGAGAGTGGACTCCTTC+TGG + chr4_1:53661854-53661873 None:intergenic 50.0%
GAAGGAGTCCACTCTCCATT+TGG - chr4_1:53661854-53661873 Msa0555640:CDS 50.0%
!!! TTGGTTTTGAGGCTTCGTGG+GGG - chr4_1:53661873-53661892 Msa0555640:CDS 50.0%
! ATTAGTCTCTGCTGGTCTGG+AGG + chr4_1:53662008-53662027 None:intergenic 50.0%
!!! TTGGTTTTGAGGCTTCGTGG+TGG - chr4_1:53661873-53661892 Msa0555640:CDS 50.0%
ATCAGAGCTTTCCACCTCCA+AGG + chr4_1:53662168-53662187 None:intergenic 50.0%
ATAAGCCTCTGCTGATCTGG+GGG + chr4_1:53662236-53662255 None:intergenic 50.0%
! TTTTGCTGGCAAGCAGTTGG+AGG - chr4_1:53662256-53662275 Msa0555640:CDS 50.0%
GGAGACGAAGAACAAGATGC+AGG + chr4_1:53662325-53662344 None:intergenic 50.0%
CATCTTGTTCTTCGTCTCCG+TGG - chr4_1:53662326-53662345 Msa0555640:CDS 50.0%
TGGCAAAACCATCACCCTTG+AGG - chr4_1:53661239-53661258 Msa0555640:CDS 50.0%
CAAAACCATCACCCTTGAGG+TGG - chr4_1:53661242-53661261 Msa0555640:CDS 50.0%
TGATTCCACCTCAAGGGTGA+TGG + chr4_1:53661250-53661269 None:intergenic 50.0%
CACCCTTGAGGTGGAATCAT+CGG - chr4_1:53661251-53661270 Msa0555640:CDS 50.0%
GGCCAAGATTCAGGACAAAG+AGG - chr4_1:53661293-53661312 Msa0555640:CDS 50.0%
TAAGCCTCTGCTGATCAGGA+GGG + chr4_1:53661323-53661342 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+AGG + chr4_1:53661324-53661343 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+TGG - chr4_1:53661330-53661349 Msa0555640:CDS 50.0%
CTTTGCTGGGAAACAACTCG+AGG - chr4_1:53661344-53661363 Msa0555640:CDS 50.0%
CGGAAAAACCATCACCCTAG+AGG - chr4_1:53661467-53661486 Msa0555640:CDS 50.0%
!! GGATTCAACCTCTAGGGTGA+TGG + chr4_1:53661478-53661497 None:intergenic 50.0%
CACCCTAGAGGTTGAATCCT+CGG - chr4_1:53661479-53661498 Msa0555640:CDS 50.0%
GCCAAGATCCAGGACAAAGA+GGG - chr4_1:53661522-53661541 Msa0555640:CDS 50.0%
ACCCTCTTTGTCCTGGATCT+TGG + chr4_1:53661526-53661545 None:intergenic 50.0%
TAAGCCTCTGCTGATCAGGT+GGG + chr4_1:53661551-53661570 None:intergenic 50.0%
ATAAGCCTCTGCTGATCAGG+TGG + chr4_1:53661324-53661343 None:intergenic 50.0%
CAGCAGAGGCTTATCTTTGC+AGG - chr4_1:53661330-53661349 Msa0555640:CDS 50.0%
GTATCCCTCCTGATCAACAG+AGG - chr4_1:53661772-53661791 Msa0555640:CDS 50.0%
GCTGGTAAGCAGCTTGAAGA+TGG - chr4_1:53661804-53661823 Msa0555640:CDS 50.0%
! AATGGAGAGTGGACTCCTTC+TGG + chr4_1:53661854-53661873 None:intergenic 50.0%
GAAGGAGTCCACTCTCCATT+TGG - chr4_1:53661854-53661873 Msa0555640:CDS 50.0%
!!! TTGGTTTTGAGGCTTCGTGG+GGG - chr4_1:53661873-53661892 Msa0555640:CDS 50.0%
! ATTAGTCTCTGCTGGTCTGG+AGG + chr4_1:53662008-53662027 None:intergenic 50.0%
!!! TTGGTTTTGAGGCTTCGTGG+TGG - chr4_1:53661873-53661892 Msa0555640:CDS 50.0%
ATCAGAGCTTTCCACCTCCA+AGG + chr4_1:53662168-53662187 None:intergenic 50.0%
ATAAGCCTCTGCTGATCTGG+GGG + chr4_1:53662236-53662255 None:intergenic 50.0%
! TTTTGCTGGCAAGCAGTTGG+AGG - chr4_1:53662256-53662275 Msa0555640:CDS 50.0%
GGAGACGAAGAACAAGATGC+AGG + chr4_1:53662325-53662344 None:intergenic 50.0%
CATCTTGTTCTTCGTCTCCG+TGG - chr4_1:53662326-53662345 Msa0555640:CDS 50.0%
GTATCCCTCCTGATCAGCAG+AGG - chr4_1:53661316-53661335 Msa0555640:CDS 55.0%
GCTGGGAAACAACTCGAGGA+TGG - chr4_1:53661348-53661367 Msa0555640:CDS 55.0%
GGCCAAGATCCAGGACAAAG+AGG - chr4_1:53661521-53661540 Msa0555640:CDS 55.0%
GTGGGATACCCTCTTTGTCC+TGG + chr4_1:53661533-53661552 None:intergenic 55.0%
GTATCCCACCTGATCAGCAG+AGG - chr4_1:53661544-53661563 Msa0555640:CDS 55.0%
GCCGGAAAGCAATTGGAGGA+TGG - chr4_1:53662032-53662051 Msa0555640:CDS 55.0%
GTATTCCCCCAGATCAGCAG+AGG - chr4_1:53662228-53662247 Msa0555640:CDS 55.0%
GTTGGAGGATGGTCGTACTC+TGG - chr4_1:53662271-53662290 Msa0555640:CDS 55.0%
CTTGTTCTTCGTCTCCGTGG+TGG - chr4_1:53662329-53662348 Msa0555640:CDS 55.0%
GTATCCCTCCTGATCAGCAG+AGG - chr4_1:53661316-53661335 Msa0555640:CDS 55.0%
GCTGGGAAACAACTCGAGGA+TGG - chr4_1:53661348-53661367 Msa0555640:CDS 55.0%
GGCCAAGATCCAGGACAAAG+AGG - chr4_1:53661521-53661540 Msa0555640:CDS 55.0%
GTGGGATACCCTCTTTGTCC+TGG + chr4_1:53661533-53661552 None:intergenic 55.0%
GTATCCCACCTGATCAGCAG+AGG - chr4_1:53661544-53661563 Msa0555640:CDS 55.0%
GCCGGAAAGCAATTGGAGGA+TGG - chr4_1:53662032-53662051 Msa0555640:CDS 55.0%
GTATTCCCCCAGATCAGCAG+AGG - chr4_1:53662228-53662247 Msa0555640:CDS 55.0%
GTTGGAGGATGGTCGTACTC+TGG - chr4_1:53662271-53662290 Msa0555640:CDS 55.0%
CTTGTTCTTCGTCTCCGTGG+TGG - chr4_1:53662329-53662348 Msa0555640:CDS 55.0%
GCTGGCAAGCAGTTGGAGGA+TGG - chr4_1:53662260-53662279 Msa0555640:CDS 60.0%
GCTGGCAAGCAGTTGGAGGA+TGG - chr4_1:53662260-53662279 Msa0555640:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53661213 53662358 53661213 ID=Msa0555640;Name=Msa0555640
chr4_1 mRNA 53661213 53662358 53661213 ID=Msa0555640-mRNA-1;Parent=Msa0555640;Name=Msa0555640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|381
chr4_1 exon 53661213 53662358 53661213 ID=Msa0555640-mRNA-1:exon:15588;Parent=Msa0555640-mRNA-1
chr4_1 CDS 53661213 53662358 53661213 ID=Msa0555640-mRNA-1:cds;Parent=Msa0555640-mRNA-1
Gene Sequence

>Msa0555640

ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAATCATCGGATACAATTGATAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATATTCGTTAAGACTTTGACCGGAAAAACCATCACCCTAGAGGTTGAATCCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCTGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATTTTTGTGAAGACTTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAACAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCTGATTATAACATCCAGAAGGAGTCCACTCTCCATTTGGTTTTGAGGCTTCGTGGGGGTATGCAGATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCTGATACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAGGGCATTCCTCCAGACCAGCAGAGACTAATTTTTGCCGGAAAGCAATTGGAGGATGGTCGTACTTTGGCTGATTATAATATCCAGAAGGAATCTACTTTGCATTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAATATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGTCTCCGTGGTGGCTTCTAA

Protein sequence

>Msa0555640

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*