AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266360 MtrunA17_Chr2g0331691 100.000 209 0 0 1 209 1 209 5.24e-159 437
Msa0266360 MtrunA17_Chr4g0004661 96.098 205 8 0 5 209 59 263 9.71e-151 419
Msa0266360 MtrunA17_Chr4g0034871 85.854 205 28 1 5 209 3 206 2.55e-132 370
Msa0266360 MtrunA17_Chr1g0201121 74.129 201 45 1 6 199 4 204 1.75e-110 315
Msa0266360 MtrunA17_Chr6g0466301 73.529 204 53 1 6 209 4 206 1.78e-110 315
Msa0266360 MtrunA17_Chr6g0465491 73.529 204 53 1 6 209 4 206 1.78e-110 315
Msa0266360 MtrunA17_Chr8g0383261 64.734 207 73 0 1 207 3 209 5.74e-101 291
Msa0266360 MtrunA17_Chr6g0466161 56.284 183 78 2 27 209 7 187 6.95e-69 209
Msa0266360 MtrunA17_Chr6g0465471 56.284 183 78 2 27 209 7 187 1.40e-68 208
Msa0266360 MtrunA17_Chr6g0466431 58.879 107 35 1 6 112 4 101 1.25e-41 136
Msa0266360 MtrunA17_Chr6g0465611 58.879 107 35 1 6 112 4 101 1.25e-41 136
Msa0266360 MtrunA17_Chr2g0276941 36.937 222 116 6 5 209 3 217 1.71e-40 137
Msa0266360 MtrunA17_Chr5g0400131 37.745 204 114 3 12 209 11 207 2.98e-40 136
Msa0266360 MtrunA17_Chr4g0055651 38.308 201 113 5 10 207 8 200 4.69e-40 135
Msa0266360 MtrunA17_Chr2g0276931 36.816 201 117 4 10 207 9 202 1.45e-39 134
Msa0266360 MtrunA17_Chr8g0335471 37.313 201 116 4 10 207 8 201 3.41e-39 133
Msa0266360 MtrunA17_Chr2g0283131 39.086 197 102 6 10 196 13 201 1.47e-38 132
Msa0266360 MtrunA17_Chr7g0250531 37.811 201 114 5 10 207 8 200 1.84e-38 131
Msa0266360 MtrunA17_Chr4g0032201 40.000 165 92 3 10 174 12 169 3.45e-38 131
Msa0266360 MtrunA17_Chr4g0046261 38.071 197 104 6 10 196 13 201 4.97e-38 131
Msa0266360 MtrunA17_Chr4g0040781 41.071 168 91 4 10 176 13 173 8.07e-38 130
Msa0266360 MtrunA17_Chr1g0182321 36.585 205 119 5 10 209 15 213 1.41e-37 130
Msa0266360 MtrunA17_Chr3g0112681 40.000 165 92 3 10 174 12 169 2.01e-37 129
Msa0266360 MtrunA17_Chr1g0182301 36.098 205 120 5 10 209 15 213 4.08e-37 128
Msa0266360 MtrunA17_Chr4g0055081 36.946 203 116 3 12 209 11 206 4.21e-37 128
Msa0266360 MtrunA17_Chr2g0327911 38.378 185 109 4 2 186 7 186 5.86e-37 128
Msa0266360 MtrunA17_Chr3g0123971 37.255 204 114 4 12 209 11 206 7.71e-37 127
Msa0266360 MtrunA17_Chr8g0382221 38.235 204 113 4 12 209 11 207 8.00e-37 127
Msa0266360 MtrunA17_Chr4g0030911 36.585 205 117 5 10 207 15 213 2.05e-36 127
Msa0266360 MtrunA17_Chr1g0212521 35.922 206 118 4 10 207 15 214 5.20e-36 125
Msa0266360 MtrunA17_Chr7g0263071 39.881 168 95 3 10 177 15 176 9.75e-36 125
Msa0266360 MtrunA17_Chr1g0174281 37.037 189 112 3 10 198 15 196 2.82e-35 124
Msa0266360 MtrunA17_Chr7g0214241 36.517 178 106 3 10 187 15 185 5.14e-35 123
Msa0266360 MtrunA17_Chr2g0315551 34.450 209 119 5 10 207 13 214 5.29e-35 123
Msa0266360 MtrunA17_Chr8g0351861 40.741 162 89 3 10 171 16 170 6.97e-35 123
Msa0266360 MtrunA17_Chr2g0325091 39.286 168 94 4 10 176 11 171 2.31e-34 121
Msa0266360 MtrunA17_Chr7g0234201 36.628 172 102 3 10 181 13 177 3.36e-34 121
Msa0266360 MtrunA17_Chr6g0458081 37.209 172 101 3 10 181 6 170 2.46e-33 119
Msa0266360 MtrunA17_Chr2g0319951 38.889 162 92 3 10 171 13 167 3.93e-33 118
Msa0266360 MtrunA17_Chr3g0123821 37.576 165 96 3 10 174 16 173 4.34e-33 118
Msa0266360 MtrunA17_Chr8g0390561 34.783 184 113 3 3 186 2 178 5.12e-33 117
Msa0266360 MtrunA17_Chr6g0482721 39.286 168 94 4 10 176 12 172 7.90e-33 117
Msa0266360 MtrunA17_Chr8g0381841 35.465 172 104 3 3 174 10 174 1.06e-32 117
Msa0266360 MtrunA17_Chr3g0109721 34.595 185 114 3 1 185 1 178 2.25e-32 115
Msa0266360 MtrunA17_Chr7g0231131 38.788 165 94 3 10 174 15 172 2.36e-32 116
Msa0266360 MtrunA17_Chr5g0433561 34.595 185 114 3 1 185 1 178 3.24e-32 115
Msa0266360 MtrunA17_Chr2g0290891 37.654 162 94 3 10 171 6 160 1.49e-31 114
Msa0266360 MtrunA17_Chr1g0189361 36.527 167 99 4 10 176 14 173 2.81e-31 114
Msa0266360 MtrunA17_Chr8g0349711 35.025 197 116 5 7 199 3 191 3.80e-31 113
Msa0266360 MtrunA17_Chr8g0392931 38.889 162 92 3 10 171 14 168 6.27e-31 112
Msa0266360 MtrunA17_Chr7g0275991 37.654 162 94 3 10 171 20 174 8.81e-31 112
Msa0266360 MtrunA17_Chr8g0346421 37.654 162 94 3 10 171 26 180 2.81e-30 111
Msa0266360 MtrunA17_Chr8g0384311 39.024 164 92 5 10 172 13 169 7.02e-30 109
Msa0266360 MtrunA17_Chr8g0349681 39.181 171 93 4 11 177 176 339 1.14e-29 115
Msa0266360 MtrunA17_Chr8g0349681 37.278 169 96 4 3 171 380 538 9.02e-27 107
Msa0266360 MtrunA17_Chr8g0349681 35.503 169 102 4 7 175 10 171 3.22e-26 105
Msa0266360 MtrunA17_Chr1g0199331 34.503 171 104 4 7 176 28 191 7.29e-29 107
Msa0266360 MtrunA17_Chr1g0159481 34.653 202 106 6 10 192 17 211 7.34e-28 104
Msa0266360 MtrunA17_Chr6g0465601 59.211 76 31 0 110 185 3 78 1.60e-27 100
Msa0266360 MtrunA17_Chr7g0265001 38.889 162 92 5 12 172 18 173 2.26e-27 103
Msa0266360 MtrunA17_Chr6g0466421 60.274 73 29 0 113 185 16 88 1.53e-26 97.8
Msa0266360 MtrunA17_Chr1g0197331 37.791 172 99 5 11 180 16 181 1.75e-26 101
Msa0266360 MtrunA17_Chr3g0130271 37.195 164 96 5 10 172 12 169 2.75e-26 100
Msa0266360 MtrunA17_Chr2g0326141 94.118 51 3 0 137 187 305 355 3.53e-26 103
Msa0266360 MtrunA17_Chr1g0180291 38.037 163 93 5 11 172 15 170 3.88e-26 100
Msa0266360 MtrunA17_Chr3g0138121 31.677 161 100 3 11 171 14 164 2.55e-22 90.5
Msa0266360 MtrunA17_Chr3g0138101 31.677 161 100 3 11 171 14 164 2.71e-22 90.5
Msa0266360 MtrunA17_Chr3g0138111 31.677 161 100 3 11 171 14 164 2.80e-22 90.5
Msa0266360 MtrunA17_Chr6g0486041 31.250 208 119 7 10 208 6 198 3.32e-22 89.7
Msa0266360 MtrunA17_Chr2g0325101 30.168 179 110 5 10 179 6 178 6.28e-18 78.2
Msa0266360 MtrunA17_Chr5g0405791 30.168 179 110 6 10 179 6 178 1.76e-17 77.0
Msa0266360 MtrunA17_Chr8g0371501 30.726 179 109 6 10 179 6 178 3.76e-17 76.3
Msa0266360 MtrunA17_Chr3g0117931 30.769 195 117 7 1 186 1 186 4.39e-17 76.3
Msa0266360 MtrunA17_Chr4g0037021 27.957 186 119 4 10 186 6 185 1.28e-16 74.7
Msa0266360 MtrunA17_Chr4g0046211 34.146 123 74 4 10 131 6 122 2.18e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266360 AT1G52280.1 91.262 206 17 1 4 209 2 206 2.81e-142 395
Msa0266360 AT3G16100.1 89.756 205 20 1 5 209 3 206 8.70e-140 389
Msa0266360 AT3G18820.1 88.780 205 22 1 5 209 3 206 1.74e-134 375
Msa0266360 AT1G49300.2 85.854 205 28 1 5 209 3 206 1.03e-130 366
Msa0266360 AT1G49300.1 85.854 205 28 1 5 209 3 206 1.03e-130 366
Msa0266360 AT1G22740.1 73.301 206 49 3 5 209 3 203 1.17e-108 310
Msa0266360 AT4G09720.1 69.231 208 57 2 5 209 3 206 2.05e-106 305
Msa0266360 AT4G09720.3 65.753 219 57 3 5 209 3 217 7.88e-103 296
Msa0266360 AT4G09720.4 67.136 213 58 3 5 209 3 211 8.53e-103 296
Msa0266360 AT2G21880.1 70.556 180 53 0 6 185 5 184 1.43e-93 272
Msa0266360 AT4G09720.6 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0266360 AT4G09720.5 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0266360 AT4G09720.2 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0266360 AT2G21880.2 66.111 180 53 1 6 185 5 176 7.82e-84 247
Msa0266360 AT2G21880.4 70.513 156 46 0 27 182 1 156 3.41e-80 238
Msa0266360 AT2G21880.3 70.513 156 46 0 27 182 1 156 3.41e-80 238
Msa0266360 AT5G39620.1 57.558 172 73 0 11 182 6 177 1.22e-70 214
Msa0266360 AT2G44610.1 38.049 205 113 3 12 209 11 208 5.48e-40 136
Msa0266360 AT1G28550.1 38.384 198 105 5 10 197 13 203 7.70e-40 136
Msa0266360 AT1G09630.1 41.818 165 89 3 10 174 12 169 3.29e-39 134
Msa0266360 AT4G17530.1 38.308 201 113 5 10 207 8 200 6.54e-39 133
Msa0266360 AT5G47200.1 38.308 201 113 5 10 207 8 200 1.05e-38 132
Msa0266360 AT2G33870.1 37.563 197 106 5 10 196 13 202 2.02e-38 132
Msa0266360 AT5G60860.1 39.086 197 102 6 10 196 13 201 3.75e-38 131
Msa0266360 AT3G15060.1 41.975 162 87 3 10 171 13 167 6.16e-38 131
Msa0266360 AT1G02130.1 36.318 201 118 4 10 207 8 201 1.82e-37 129
Msa0266360 AT5G45750.1 36.364 209 114 6 10 207 13 213 2.71e-37 129
Msa0266360 AT5G59840.1 36.893 206 116 5 10 207 15 214 3.18e-37 129
Msa0266360 AT3G53610.2 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0266360 AT3G53610.3 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0266360 AT3G53610.1 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0266360 AT1G05810.1 36.813 182 108 3 6 187 8 182 1.10e-36 128
Msa0266360 AT1G05810.2 36.813 182 108 3 6 187 54 228 2.65e-36 128
Msa0266360 AT3G46060.2 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0266360 AT3G46060.3 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0266360 AT3G46060.1 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0266360 AT5G59150.1 38.182 165 95 3 10 174 12 169 3.49e-36 126
Msa0266360 AT5G64990.1 39.048 210 104 6 12 209 9 206 3.67e-36 126
Msa0266360 AT1G07410.1 38.182 165 95 3 10 174 12 169 9.14e-36 125
Msa0266360 AT3G46830.1 38.788 165 94 3 10 174 12 169 1.09e-35 125
Msa0266360 AT3G46830.2 38.788 165 94 3 10 174 12 169 1.09e-35 125
Msa0266360 AT2G31680.1 35.955 178 107 3 10 187 12 182 1.12e-35 125
Msa0266360 AT3G11730.1 36.139 202 118 4 10 207 8 202 1.25e-35 125
Msa0266360 AT4G18430.1 33.810 210 119 7 10 207 13 214 1.47e-35 125
Msa0266360 AT5G10260.1 36.585 205 115 4 12 209 11 207 3.18e-35 124
Msa0266360 AT3G12160.1 40.606 165 91 3 10 174 15 172 3.88e-35 124
Msa0266360 AT4G18800.1 39.881 168 93 4 10 176 13 173 7.28e-35 123
Msa0266360 AT5G47960.1 34.906 212 117 5 10 207 15 219 1.41e-34 122
Msa0266360 AT2G43130.1 35.955 178 107 3 10 187 12 182 1.91e-34 122
Msa0266360 AT1G06400.1 35.407 209 116 6 10 207 13 213 2.02e-34 122
Msa0266360 AT1G16920.1 39.286 168 94 5 10 176 13 173 3.97e-34 121
Msa0266360 AT4G39890.1 39.634 164 93 2 11 174 10 167 6.37e-34 120
Msa0266360 AT4G35860.1 37.791 172 100 3 10 181 6 170 9.87e-34 120
Msa0266360 AT5G45130.1 34.286 210 123 5 1 207 1 198 1.28e-33 119
Msa0266360 AT4G39990.1 37.576 165 96 3 10 174 17 174 1.32e-33 120
Msa0266360 AT1G18200.1 40.741 162 89 3 10 171 13 167 1.40e-33 120
Msa0266360 AT5G64990.2 37.788 217 104 7 12 209 9 213 1.63e-33 119
Msa0266360 AT5G03520.1 41.071 168 93 3 10 177 15 176 3.69e-33 119
Msa0266360 AT3G07410.1 36.047 172 103 3 10 181 12 176 9.03e-33 117
Msa0266360 AT2G22290.1 35.437 206 116 4 12 209 11 207 1.12e-32 117
Msa0266360 AT5G65270.1 36.364 165 98 3 10 174 17 174 1.76e-32 117
Msa0266360 AT4G19640.1 35.135 185 113 3 1 185 1 178 2.25e-32 116
Msa0266360 AT4G17160.1 38.509 161 92 3 11 171 7 160 2.65e-32 116
Msa0266360 AT3G09900.1 41.667 168 92 4 10 177 15 176 3.28e-32 116
Msa0266360 AT1G73640.1 39.506 162 91 3 10 171 13 167 4.04e-32 116
Msa0266360 AT5G47520.1 36.527 167 99 3 10 176 14 173 7.56e-32 115
Msa0266360 AT4G17170.1 37.654 162 94 3 10 171 6 160 1.57e-31 114
Msa0266360 AT5G45130.2 34.518 197 114 5 14 207 22 206 4.79e-31 113
Msa0266360 AT3G54840.2 35.119 168 101 4 7 173 30 190 9.34e-30 109
Msa0266360 AT1G01200.1 36.420 162 97 2 10 171 28 183 1.10e-29 110
Msa0266360 AT3G54840.1 34.270 178 109 4 7 183 30 200 1.45e-29 109
Msa0266360 AT3G54840.3 34.884 172 104 4 13 183 2 166 7.88e-29 106
Msa0266360 AT1G43890.3 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0266360 AT1G43890.1 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0266360 AT1G43890.2 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0266360 AT5G03530.2 36.082 194 98 7 12 186 15 201 1.55e-27 104
Msa0266360 AT5G03530.1 36.082 194 98 7 12 186 15 201 1.55e-27 104
Msa0266360 AT4G19640.2 36.486 148 89 2 1 148 1 143 1.76e-27 102
Msa0266360 AT4G19640.3 38.168 131 77 1 1 131 1 127 5.29e-26 99.8
Msa0266360 AT5G03520.2 41.667 132 71 3 46 177 41 166 1.01e-24 96.7
Msa0266360 AT5G55190.1 31.677 161 100 3 11 171 14 164 3.44e-22 90.5
Msa0266360 AT5G20010.1 32.530 166 92 5 11 171 14 164 3.70e-22 90.5
Msa0266360 AT5G20020.1 31.677 161 100 3 11 171 14 164 3.94e-22 90.5
Msa0266360 AT3G09910.5 35.465 172 103 5 11 181 14 178 9.49e-22 88.6
Msa0266360 AT3G09910.4 35.465 172 103 5 11 181 14 178 9.49e-22 88.6
Msa0266360 AT5G59150.2 37.398 123 70 3 52 174 3 118 9.93e-22 87.8
Msa0266360 AT3G09910.3 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0266360 AT3G09910.1 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0266360 AT3G09910.2 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0266360 AT4G28950.1 31.068 206 121 7 10 208 6 197 3.14e-21 87.8
Msa0266360 AT4G35860.2 36.923 130 75 3 52 181 2 124 9.37e-21 85.1
Msa0266360 AT5G55080.1 29.814 161 103 3 11 171 14 164 1.04e-20 86.7
Msa0266360 AT5G45970.1 29.444 180 112 5 10 180 6 179 8.01e-18 78.6
Msa0266360 AT5G62880.1 31.746 189 112 6 1 180 1 181 1.96e-17 77.8
Msa0266360 AT3G48040.1 31.746 189 112 6 1 180 1 181 2.53e-17 77.4
Msa0266360 AT4G35020.1 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0266360 AT4G35020.2 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0266360 AT4G35020.3 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0266360 AT1G20090.1 29.050 179 112 5 10 179 5 177 1.58e-16 74.7
Msa0266360 AT2G44690.1 29.651 172 106 5 10 172 18 183 2.05e-16 74.7
Msa0266360 AT1G75840.1 29.050 179 112 5 10 179 6 178 3.07e-16 73.9
Msa0266360 AT3G51300.1 29.609 179 111 5 10 179 6 178 3.65e-16 73.9
Msa0266360 AT2G17800.2 29.050 179 112 5 10 179 6 178 1.93e-15 72.0
Msa0266360 AT2G17800.1 29.050 179 112 5 10 179 6 178 1.93e-15 72.0
Msa0266360 AT4G35950.1 29.050 179 112 5 10 179 6 178 2.50e-15 71.6
Msa0266360 AT5G62880.2 35.606 132 76 5 1 131 1 124 3.75e-15 71.2
Msa0266360 AT3G48040.2 35.606 132 76 5 1 131 1 124 1.05e-14 69.7
Msa0266360 AT5G09910.1 26.012 173 99 5 11 156 23 193 3.89e-13 67.4
Msa0266360 AT5G09910.4 26.012 173 99 5 11 156 23 193 3.89e-13 67.4
Msa0266360 AT4G35020.4 33.058 121 74 4 10 129 6 120 7.61e-13 63.9
Msa0266360 AT4G35020.5 33.058 121 74 4 10 129 6 120 7.61e-13 63.9
Msa0266360 AT5G64813.1 25.758 198 109 7 11 173 23 217 4.93e-12 64.3
Msa0266360 AT5G64813.3 25.758 198 109 7 11 173 23 217 4.93e-12 64.3
Msa0266360 AT5G64813.2 25.758 198 109 7 11 173 23 217 4.93e-12 64.3

Find 65 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCGACATCAATTGTTTC+TGG 0.232108 2_2:+66847569 None:intergenic
ATTTGAAGGATGCAGTATTT+TGG 0.252931 2_2:+66847464 None:intergenic
GTAATACTAATACATATATA+TGG 0.256785 2_2:+66847279 None:intergenic
AAAACTCACAATTCTTCTTC+AGG 0.319718 2_2:+66847926 None:intergenic
GCGAGAAGAGTTCCTTATTC+AGG 0.320875 2_2:-66848393 Msa0266360:intron
TTGTTTCCCAACACCACAAA+TGG 0.348208 2_2:+66848256 None:intergenic
AAATACTGCATCCTTCAAAT+TGG 0.358102 2_2:-66847461 Msa0266360:three_prime_UTR
ACTCTTCTCGCCAGTGGTTA+AGG 0.372983 2_2:+66848405 None:intergenic
TCCTGAAAACTTCCCATTTG+TGG 0.376974 2_2:-66848269 Msa0266360:CDS
AGACAGGTTGTTCACATTGC+AGG 0.381648 2_2:-66849886 Msa0266360:intron
AAAGTTTAGTAATCAGTATA+AGG 0.387117 2_2:-66849952 Msa0266360:CDS
TTTGCAGAGGTCTCAAAGTA+TGG 0.397953 2_2:+66848010 None:intergenic
AACTTCCCATTTGTGGTGTT+GGG 0.400986 2_2:-66848262 Msa0266360:CDS
GTCTTCAACTTGAACTTCCT+TGG 0.413731 2_2:+66849905 None:intergenic
GTCATCATCCTCGGTGATAG+TGG 0.414536 2_2:-66850154 Msa0266360:CDS
GTCAGCTTCACATGCAAGAT+TGG 0.428919 2_2:-66847489 Msa0266360:three_prime_UTR
GGACGGCAACAGAGGTCAAC+AGG 0.434788 2_2:-66847542 Msa0266360:CDS
ACAATTGATGTCGGTGGCGG+TGG 0.446109 2_2:-66847563 Msa0266360:CDS
CAACTTGAACTTCCTTGGTA+AGG 0.448202 2_2:+66849910 None:intergenic
AAAGGCATGGTGTGCTTCCA+AGG 0.464084 2_2:-66848041 Msa0266360:CDS
GATCTGGGATACTGCTGGTC+AGG 0.467671 2_2:-66848519 Msa0266360:CDS
TAATACTAATACATATATAT+GGG 0.473672 2_2:+66847280 None:intergenic
CAGGAGAGGTTTCAAAGTCT+TGG 0.475629 2_2:-66848500 Msa0266360:CDS
TCCTTCTTGTATCTCTCTAG+TGG 0.482873 2_2:-66847393 Msa0266360:three_prime_UTR
AAACTTCCCATTTGTGGTGT+TGG 0.495054 2_2:-66848263 Msa0266360:CDS
AGAATGTAGCACCAATTTGA+AGG 0.498460 2_2:+66847450 None:intergenic
GGAAACAAAGTAGATGTTGA+TGG 0.512592 2_2:-66848241 Msa0266360:CDS
CTTTGAGACCTCTGCAAAGG+AGG 0.516360 2_2:-66848005 Msa0266360:CDS
AAAGTATGGTATATTCCCCT+TGG 0.522925 2_2:+66848024 None:intergenic
AGGAAGTTCAAGTTGAAGAC+AGG 0.529226 2_2:-66849902 Msa0266360:CDS
GAGAATGAGAAGCCATGGAT+TGG 0.529989 2_2:+66850197 None:intergenic
ACAGTTTCAATTCCAATCCA+TGG 0.530102 2_2:-66850209 Msa0266360:exon
TGTTTCCCAACACCACAAAT+GGG 0.537488 2_2:+66848257 None:intergenic
GTAACATTAAGTAAACAAAC+AGG 0.539021 2_2:+66847358 None:intergenic
TTGATGTCGGTGGCGGTGGA+CGG 0.543988 2_2:-66847559 Msa0266360:CDS
GCGGCGAGAATGAGAAGCCA+TGG 0.559756 2_2:+66850192 None:intergenic
ATGCAGATCTGGGATACTGC+TGG 0.566605 2_2:-66848524 Msa0266360:intron
GAAACAATTGATGTCGGTGG+CGG 0.576334 2_2:-66847566 Msa0266360:CDS
GAGGTTTCAAAGTCTTGGTG+TGG 0.576541 2_2:-66848495 Msa0266360:CDS
CTTGGTGTGGCTTTCTACCG+AGG 0.578330 2_2:-66848482 Msa0266360:CDS
AATCAGTATAAGGCTACCAT+TGG 0.580849 2_2:-66849942 Msa0266360:CDS
TTTGAGACCTCTGCAAAGGA+GGG 0.585589 2_2:-66848004 Msa0266360:CDS
AAGGCATGGTGTGCTTCCAA+GGG 0.586547 2_2:-66848040 Msa0266360:CDS
CAAGAAGGACAAGTTGTCCC+AGG 0.588064 2_2:+66847407 None:intergenic
GGTAAGGAAATCAGCACCAA+TGG 0.599639 2_2:+66849926 None:intergenic
GCCACTAGAGAGATACAAGA+AGG 0.599909 2_2:+66847392 None:intergenic
AACAAAGTAGATGTTGATGG+TGG 0.603728 2_2:-66848238 Msa0266360:CDS
GTGGCGGTGGACGGCAACAG+AGG 0.605632 2_2:-66847550 Msa0266360:CDS
CTGAGAAGAAAGCAAAGGCA+TGG 0.611252 2_2:-66848054 Msa0266360:CDS
TAAGGAACTCTTCTCGCCAG+TGG 0.617763 2_2:+66848399 None:intergenic
TCATCATCCTCGGTGATAGT+GGG 0.618638 2_2:-66850153 Msa0266360:intron
TTATTGAAAGTCATCATCCT+CGG 0.622878 2_2:-66850163 Msa0266360:CDS
CCAGAAACAATTGATGTCGG+TGG 0.629506 2_2:-66847569 Msa0266360:CDS
GGGATACTGCTGGTCAGGAG+AGG 0.630015 2_2:-66848514 Msa0266360:CDS
TGGTGCTGATTTCCTTACCA+AGG 0.632236 2_2:-66849922 Msa0266360:CDS
GGTTTCTGAGAAGAAAGCAA+AGG 0.639361 2_2:-66848059 Msa0266360:CDS
ATTAAAACCCTCCTTTGCAG+AGG 0.646100 2_2:+66847997 None:intergenic
ATACTTTGAGACCTCTGCAA+AGG 0.653339 2_2:-66848008 Msa0266360:CDS
ATGCCAGAAACAATTGATGT+CGG 0.654391 2_2:-66847572 Msa0266360:CDS
TGACATTTACATCATAAACA+AGG 0.673979 2_2:+66848444 None:intergenic
TGATGACTTTCAATAACATG+CGG 0.690006 2_2:+66850170 None:intergenic
GGACACAGCAATCTGCACCT+CGG 0.707086 2_2:+66848465 None:intergenic
AGGCATGGTGTGCTTCCAAG+GGG 0.713588 2_2:-66848039 Msa0266360:CDS
TGACTTTCAATAACATGCGG+CGG 0.715122 2_2:+66850173 None:intergenic
TTATATACCCACTATCACCG+AGG 0.799645 2_2:+66850146 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAAATAAATAATTGA+AGG - chr2_2:66848566-66848585 Msa0266360:intron 10.0%
!! TATTTACTTATGAAAAATAA+GGG + chr2_2:66850116-66850135 None:intergenic 10.0%
!! ATATTTACTTATGAAAAATA+AGG + chr2_2:66850117-66850136 None:intergenic 10.0%
!! TAATACTAATACATATATAT+GGG + chr2_2:66850170-66850189 None:intergenic 10.0%
!! TTCATATTACATACATAATT+AGG + chr2_2:66848806-66848825 None:intergenic 15.0%
!! AATTATGTATGTAATATGAA+AGG - chr2_2:66848806-66848825 Msa0266360:intron 15.0%
!! ATTATGTATGTAATATGAAA+GGG - chr2_2:66848807-66848826 Msa0266360:intron 15.0%
!!! CAAAAAAAAAAAAGTTTTGT+TGG - chr2_2:66849608-66849627 Msa0266360:intron 15.0%
!!! AATCTTATTTTAATATAGAG+TGG - chr2_2:66849678-66849697 Msa0266360:intron 15.0%
!! ATTTACTTATGAAAAATAAG+GGG + chr2_2:66850115-66850134 None:intergenic 15.0%
!! GTAATACTAATACATATATA+TGG + chr2_2:66850171-66850190 None:intergenic 15.0%
!! GATTAAATTAATGTTCGATT+CGG - chr2_2:66847404-66847423 Msa0266360:three_prime_UTR 20.0%
!!! TTTTTTTTTATTTGTTTGGC+AGG - chr2_2:66847434-66847453 Msa0266360:three_prime_UTR 20.0%
!!! TTTTTTTTATTTGTTTGGCA+GGG - chr2_2:66847435-66847454 Msa0266360:three_prime_UTR 20.0%
!! AAAGTTTAGTAATCAGTATA+AGG - chr2_2:66847495-66847514 Msa0266360:three_prime_UTR 20.0%
!!! ATATATTTTGACATTGAGAA+TGG + chr2_2:66848012-66848031 None:intergenic 20.0%
!! CTACATGTTAAATGTTAATA+GGG + chr2_2:66848041-66848060 None:intergenic 20.0%
!!! ATTACTATCAGCTTTTAAAT+AGG + chr2_2:66848127-66848146 None:intergenic 20.0%
!!! ACCTAATTGATTTGATTTTT+AGG - chr2_2:66849142-66849161 Msa0266360:intron 20.0%
!!! GAATTCTGAAAAATAATTTG+AGG + chr2_2:66849263-66849282 None:intergenic 20.0%
!!! AAAAAAAAAGTTTTGTTGGT+AGG - chr2_2:66849612-66849631 Msa0266360:intron 20.0%
!!! AGGATTTAGAATATTAAAGA+TGG - chr2_2:66849632-66849651 Msa0266360:intron 20.0%
!!! TTTAGAATATTAAAGATGGT+AGG - chr2_2:66849636-66849655 Msa0266360:intron 20.0%
!! TTAGAATATTAAAGATGGTA+GGG - chr2_2:66849637-66849656 Msa0266360:intron 20.0%
!! TTTACTTATGAAAAATAAGG+GGG + chr2_2:66850114-66850133 None:intergenic 20.0%
! AATTGAAAAGGAAAAGGAAA+AGG + chr2_2:66847346-66847365 None:intergenic 25.0%
! AGTTGAAATTGAAAAGGAAA+AGG + chr2_2:66847352-66847371 None:intergenic 25.0%
! TGTGATAGTTGAAATTGAAA+AGG + chr2_2:66847358-66847377 None:intergenic 25.0%
! TTTCAACTATCACATGTTAA+AGG - chr2_2:66847364-66847383 Msa0266360:three_prime_UTR 25.0%
! TTCAACTATCACATGTTAAA+GGG - chr2_2:66847365-66847384 Msa0266360:three_prime_UTR 25.0%
!! TCCAATATATGACATGTTTT+AGG - chr2_2:66847613-66847632 Msa0266360:intron 25.0%
! TCCTAAAACATGTCATATAT+TGG + chr2_2:66847617-66847636 None:intergenic 25.0%
! GCTACATGTTAAATGTTAAT+AGG + chr2_2:66848042-66848061 None:intergenic 25.0%
! TGATATTCTGACATCAATTT+GGG + chr2_2:66848079-66848098 None:intergenic 25.0%
! AGTTTATACCCAAAAAAACA+GGG + chr2_2:66848167-66848186 None:intergenic 25.0%
! TAGTTTATACCCAAAAAAAC+AGG + chr2_2:66848168-66848187 None:intergenic 25.0%
!! CTTTTGTCTAAGAAAGATAA+AGG + chr2_2:66848376-66848395 None:intergenic 25.0%
!! TATCAAAAAACAAAGTGTCA+TGG + chr2_2:66848625-66848644 None:intergenic 25.0%
!! AAATTCATGTTTCTTTTTCC+TGG - chr2_2:66848719-66848738 Msa0266360:intron 25.0%
!!! AGACCATTGTATTGATTAAA+TGG - chr2_2:66848771-66848790 Msa0266360:intron 25.0%
! GATCCATTTAATCAATACAA+TGG + chr2_2:66848777-66848796 None:intergenic 25.0%
! TGACATTTACATCATAAACA+AGG + chr2_2:66849006-66849025 None:intergenic 25.0%
! GAATAAAAATCACCTGAATA+AGG + chr2_2:66849069-66849088 None:intergenic 25.0%
!! TTCAGGTGATTTTTATTCTT+TGG - chr2_2:66849071-66849090 Msa0266360:intron 25.0%
! ATCTTAACACAATTTCTGAA+GGG - chr2_2:66849103-66849122 Msa0266360:intron 25.0%
! GCCTAAAAATCAAATCAATT+AGG + chr2_2:66849146-66849165 None:intergenic 25.0%
! GAGATAAATAACTTACAACT+CGG + chr2_2:66849241-66849260 None:intergenic 25.0%
!! TTTGATTTACCATATGTTCA+CGG - chr2_2:66849323-66849342 Msa0266360:intron 25.0%
! AAAGAGCAAAACTTCTTAAA+TGG + chr2_2:66849588-66849607 None:intergenic 25.0%
! TAGAATATTAAAGATGGTAG+GGG - chr2_2:66849638-66849657 Msa0266360:intron 25.0%
! AGTTATACATTCATTCATAG+CGG + chr2_2:66849743-66849762 None:intergenic 25.0%
!!! GTATAACTTGCTATTTCAAT+TGG - chr2_2:66849755-66849774 Msa0266360:intron 25.0%
! AGGATCAAACAAAATATCTA+TGG + chr2_2:66849833-66849852 None:intergenic 25.0%
!!! ATAGATATTTTGTTTGATCC+TGG - chr2_2:66849832-66849851 Msa0266360:intron 25.0%
! GTAACATTAAGTAAACAAAC+AGG + chr2_2:66850092-66850111 None:intergenic 25.0%
TGATGACTTTCAATAACATG+CGG + chr2_2:66847280-66847299 None:intergenic 30.0%
TTATTGAAAGTCATCATCCT+CGG - chr2_2:66847284-66847303 Msa0266360:three_prime_UTR 30.0%
CATGTCATATATTGGAAACA+CGG + chr2_2:66847609-66847628 None:intergenic 30.0%
!!! GTTTTAGGATCTATAAAGCT+CGG - chr2_2:66847628-66847647 Msa0266360:intron 30.0%
GACAAATGTTAGTAAGTTAG+CGG - chr2_2:66847681-66847700 Msa0266360:intron 30.0%
CAATATTAAGTGTATGACCT+TGG + chr2_2:66847736-66847755 None:intergenic 30.0%
ACACTGTCGTAAATTGTAAT+CGG + chr2_2:66847929-66847948 None:intergenic 30.0%
GAGAATGGAAAAAAGAAGTA+TGG + chr2_2:66847997-66848016 None:intergenic 30.0%
GTGATATTCTGACATCAATT+TGG + chr2_2:66848080-66848099 None:intergenic 30.0%
! TATCAGCTTTTAAATAGGAC+TGG + chr2_2:66848122-66848141 None:intergenic 30.0%
!!! TTTCATCTACCCTGTTTTTT+TGG - chr2_2:66848155-66848174 Msa0266360:intron 30.0%
!!! TTCATCTACCCTGTTTTTTT+GGG - chr2_2:66848156-66848175 Msa0266360:intron 30.0%
!! ACAAAAGCATCTTCTAACTT+TGG - chr2_2:66848244-66848263 Msa0266360:CDS 30.0%
CTTAGACAAAAGTCAAATGT+TGG - chr2_2:66848384-66848403 Msa0266360:intron 30.0%
! AATTTAATCCTGTGCACTTT+TGG - chr2_2:66848417-66848436 Msa0266360:CDS 30.0%
TCACTACATGATGAAAAACA+AGG - chr2_2:66848457-66848476 Msa0266360:CDS 30.0%
AACAAGGTTTAAGAAGCTAT+TGG - chr2_2:66848473-66848492 Msa0266360:CDS 30.0%
ACAAGGTTTAAGAAGCTATT+GGG - chr2_2:66848474-66848493 Msa0266360:CDS 30.0%
GATATCTCTTCAATGTGATT+TGG + chr2_2:66848519-66848538 None:intergenic 30.0%
GATTCTTGAGCAATATGTTT+GGG + chr2_2:66848541-66848560 None:intergenic 30.0%
AGATTCTTGAGCAATATGTT+TGG + chr2_2:66848542-66848561 None:intergenic 30.0%
TACTTCCTAGATACATATCT+AGG - chr2_2:66848590-66848609 Msa0266360:intron 30.0%
ATATGCCTAGATATGTATCT+AGG + chr2_2:66848598-66848617 None:intergenic 30.0%
GATCTTAACACAATTTCTGA+AGG - chr2_2:66849102-66849121 Msa0266360:intron 30.0%
AGTCTATCAACTACATATGA+TGG + chr2_2:66849285-66849304 None:intergenic 30.0%
TTGATTTACCATATGTTCAC+GGG - chr2_2:66849324-66849343 Msa0266360:intron 30.0%
!!! TTCATTCTTGAGAGCATTTT+TGG + chr2_2:66849501-66849520 None:intergenic 30.0%
AAAACTCACAATTCTTCTTC+AGG + chr2_2:66849524-66849543 None:intergenic 30.0%
AGAATATTAAAGATGGTAGG+GGG - chr2_2:66849639-66849658 Msa0266360:intron 30.0%
! ATTTGAAGGATGCAGTATTT+TGG + chr2_2:66849986-66850005 None:intergenic 30.0%
AAATACTGCATCCTTCAAAT+TGG - chr2_2:66849986-66850005 Msa0266360:CDS 30.0%
ACAGTTTCAATTCCAATCCA+TGG - chr2_2:66847238-66847257 Msa0266360:three_prime_UTR 35.0%
AAAGGAAAAGGAAAAGGAGA+AGG + chr2_2:66847340-66847359 None:intergenic 35.0%
!! TTTTATTTGTTTGGCAGGGT+TGG - chr2_2:66847439-66847458 Msa0266360:three_prime_UTR 35.0%
AATCAGTATAAGGCTACCAT+TGG - chr2_2:66847505-66847524 Msa0266360:three_prime_UTR 35.0%
ATTAAGTGTATGACCTTGGT+AGG + chr2_2:66847732-66847751 None:intergenic 35.0%
GTAATCGGCATCAACTAATT+CGG + chr2_2:66847914-66847933 None:intergenic 35.0%
! TTTAAATAGGACTGGTGAAG+TGG + chr2_2:66848114-66848133 None:intergenic 35.0%
! TTTTGTGACTAGTGTGAACA+AGG + chr2_2:66848230-66848249 None:intergenic 35.0%
GAGACAAGAATGTCAAACAT+TGG + chr2_2:66848340-66848359 None:intergenic 35.0%
ATGTAGTGAGAGGAACAAAA+TGG + chr2_2:66848446-66848465 None:intergenic 35.0%
! GTTTTTCATCATGTAGTGAG+AGG + chr2_2:66848456-66848475 None:intergenic 35.0%
TTGAGATATGATGACATGGT+TGG - chr2_2:66848693-66848712 Msa0266360:intron 35.0%
TGAGATATGATGACATGGTT+GGG - chr2_2:66848694-66848713 Msa0266360:intron 35.0%
!!! AAGCATCGATCTTTTTATCC+AGG + chr2_2:66848740-66848759 None:intergenic 35.0%
!! CTTTTGAAAACCTTAACCAC+TGG - chr2_2:66849032-66849051 Msa0266360:intron 35.0%
! TTAACACAATTTCTGAAGGG+CGG - chr2_2:66849106-66849125 Msa0266360:intron 35.0%
GGAAACAAAGTAGATGTTGA+TGG - chr2_2:66849206-66849225 Msa0266360:intron 35.0%
! AACAAAGTAGATGTTGATGG+TGG - chr2_2:66849209-66849228 Msa0266360:intron 35.0%
TGATTTACCATATGTTCACG+GGG - chr2_2:66849325-66849344 Msa0266360:intron 35.0%
AAAGTATGGTATATTCCCCT+TGG + chr2_2:66849426-66849445 None:intergenic 35.0%
!! AAAGGAGGGTTTTAATGTTG+AGG - chr2_2:66849457-66849476 Msa0266360:intron 35.0%
TTTATGCGCATTGTTAACTG+TGG - chr2_2:66849561-66849580 Msa0266360:intron 35.0%
! GTTTCAAGTGATTCTCTTTG+AGG - chr2_2:66849789-66849808 Msa0266360:intron 35.0%
ATCTGTCATAATCAACAACC+AGG + chr2_2:66849853-66849872 None:intergenic 35.0%
ATGCCAGAAACAATTGATGT+CGG - chr2_2:66849875-66849894 Msa0266360:intron 35.0%
AGAATGTAGCACCAATTTGA+AGG + chr2_2:66850000-66850019 None:intergenic 35.0%
! ATTTTCAGCAATGAAAAGCC+TGG - chr2_2:66850022-66850041 Msa0266360:intron 35.0%
! TTTTCAGCAATGAAAAGCCT+GGG - chr2_2:66850023-66850042 Msa0266360:intron 35.0%
TGACTTTCAATAACATGCGG+CGG + chr2_2:66847277-66847296 None:intergenic 40.0%
TTATATACCCACTATCACCG+AGG + chr2_2:66847304-66847323 None:intergenic 40.0%
CAACTTGAACTTCCTTGGTA+AGG + chr2_2:66847540-66847559 None:intergenic 40.0%
GTCTTCAACTTGAACTTCCT+TGG + chr2_2:66847545-66847564 None:intergenic 40.0%
!! AGGAAGTTCAAGTTGAAGAC+AGG - chr2_2:66847545-66847564 Msa0266360:CDS 40.0%
TCGACGAGACAACACATATA+CGG - chr2_2:66847760-66847779 Msa0266360:intron 40.0%
AGTCTGTGCTTCTTTCGTTA+CGG + chr2_2:66847960-66847979 None:intergenic 40.0%
TTACATGACCCACTTGAAGA+TGG + chr2_2:66848310-66848329 None:intergenic 40.0%
! AATGGATTCCAAAAGTGCAC+AGG + chr2_2:66848428-66848447 None:intergenic 40.0%
! GAAGCTATTGGGCATGTTTT+TGG - chr2_2:66848485-66848504 Msa0266360:CDS 40.0%
GTGCTTGAGATATGATGACA+TGG - chr2_2:66848689-66848708 Msa0266360:intron 40.0%
TCCTGAAAACTTCCCATTTG+TGG - chr2_2:66849178-66849197 Msa0266360:intron 40.0%
! ACCACAAATGGGAAGTTTTC+AGG + chr2_2:66849182-66849201 None:intergenic 40.0%
AAACTTCCCATTTGTGGTGT+TGG - chr2_2:66849184-66849203 Msa0266360:intron 40.0%
AACTTCCCATTTGTGGTGTT+GGG - chr2_2:66849185-66849204 Msa0266360:intron 40.0%
TGTTTCCCAACACCACAAAT+GGG + chr2_2:66849193-66849212 None:intergenic 40.0%
TTGTTTCCCAACACCACAAA+TGG + chr2_2:66849194-66849213 None:intergenic 40.0%
TAGACTTTCTTCCTCTTGAG+AGG - chr2_2:66849299-66849318 Msa0266360:intron 40.0%
AGACTTTCTTCCTCTTGAGA+GGG - chr2_2:66849300-66849319 Msa0266360:intron 40.0%
GTAAATCAAACCCTCTCAAG+AGG + chr2_2:66849313-66849332 None:intergenic 40.0%
GATTTACCATATGTTCACGG+GGG - chr2_2:66849326-66849345 Msa0266360:intron 40.0%
ATTTACCATATGTTCACGGG+GGG - chr2_2:66849327-66849346 Msa0266360:intron 40.0%
! GCATTTGTTGCTTCTGTTTC+AGG - chr2_2:66849367-66849386 Msa0266360:intron 40.0%
! GGTTTCTGAGAAGAAAGCAA+AGG - chr2_2:66849388-66849407 Msa0266360:intron 40.0%
TTTGCAGAGGTCTCAAAGTA+TGG + chr2_2:66849440-66849459 None:intergenic 40.0%
!! ATACTTTGAGACCTCTGCAA+AGG - chr2_2:66849439-66849458 Msa0266360:intron 40.0%
ATTAAAACCCTCCTTTGCAG+AGG + chr2_2:66849453-66849472 None:intergenic 40.0%
! TCAAGTGATTCTCTTTGAGG+AGG - chr2_2:66849792-66849811 Msa0266360:intron 40.0%
TCCTTCTTGTATCTCTCTAG+TGG - chr2_2:66850054-66850073 Msa0266360:intron 40.0%
GAGAATGAGAAGCCATGGAT+TGG + chr2_2:66847253-66847272 None:intergenic 45.0%
TCATCATCCTCGGTGATAGT+GGG - chr2_2:66847294-66847313 Msa0266360:three_prime_UTR 45.0%
GGTAAGGAAATCAGCACCAA+TGG + chr2_2:66847524-66847543 None:intergenic 45.0%
!! TGGTGCTGATTTCCTTACCA+AGG - chr2_2:66847525-66847544 Msa0266360:exon 45.0%
AGACAGGTTGTTCACATTGC+AGG - chr2_2:66847561-66847580 Msa0266360:CDS 45.0%
ACCAATTGAGCTTCCTACCA+AGG - chr2_2:66847716-66847735 Msa0266360:intron 45.0%
ACCTTGGTAGGAAGCTCAAT+TGG + chr2_2:66847720-66847739 None:intergenic 45.0%
CGACGAGACAACACATATAC+GGG - chr2_2:66847761-66847780 Msa0266360:intron 45.0%
GTCTGTGCTTCTTTCGTTAC+GGG + chr2_2:66847959-66847978 None:intergenic 45.0%
! TGGTGGTGAACTTCATGAAC+AGG + chr2_2:66848290-66848309 None:intergenic 45.0%
AGTTCACCACCATCTTCAAG+TGG - chr2_2:66848298-66848317 Msa0266360:intron 45.0%
GTTCACCACCATCTTCAAGT+GGG - chr2_2:66848299-66848318 Msa0266360:intron 45.0%
TCGTTGTGTACATGCAGATC+TGG - chr2_2:66848912-66848931 Msa0266360:intron 45.0%
CGTTGTGTACATGCAGATCT+GGG - chr2_2:66848913-66848932 Msa0266360:intron 45.0%
CAGGAGAGGTTTCAAAGTCT+TGG - chr2_2:66848947-66848966 Msa0266360:intron 45.0%
GAGGTTTCAAAGTCTTGGTG+TGG - chr2_2:66848952-66848971 Msa0266360:intron 45.0%
GCGAGAAGAGTTCCTTATTC+AGG - chr2_2:66849054-66849073 Msa0266360:intron 45.0%
!! GGGAAGTTTTCAGGATCAGA+TGG + chr2_2:66849173-66849192 None:intergenic 45.0%
TTTACCATATGTTCACGGGG+GGG - chr2_2:66849328-66849347 Msa0266360:intron 45.0%
CTGAGAAGAAAGCAAAGGCA+TGG - chr2_2:66849393-66849412 Msa0266360:intron 45.0%
! TTTGAGACCTCTGCAAAGGA+GGG - chr2_2:66849443-66849462 Msa0266360:intron 45.0%
! GTGATTCTCTTTGAGGAGGA+TGG - chr2_2:66849796-66849815 Msa0266360:intron 45.0%
! TTCTCTTTGAGGAGGATGGT+TGG - chr2_2:66849800-66849819 Msa0266360:intron 45.0%
CCACCGACATCAATTGTTTC+TGG + chr2_2:66849881-66849900 None:intergenic 45.0%
CCAGAAACAATTGATGTCGG+TGG - chr2_2:66849878-66849897 Msa0266360:intron 45.0%
GAAACAATTGATGTCGGTGG+CGG - chr2_2:66849881-66849900 Msa0266360:intron 45.0%
GTCAGCTTCACATGCAAGAT+TGG - chr2_2:66849958-66849977 Msa0266360:CDS 45.0%
GCCACTAGAGAGATACAAGA+AGG + chr2_2:66850058-66850077 None:intergenic 45.0%
!!! TTTTTTTTTTTTTATTTGTT+TGG - chr2_2:66847430-66847449 Msa0266360:three_prime_UTR 5.0%
GTCATCATCCTCGGTGATAG+TGG - chr2_2:66847293-66847312 Msa0266360:three_prime_UTR 50.0%
! TAGGACTGGTGAAGTGGTGA+TGG + chr2_2:66848108-66848127 None:intergenic 50.0%
CATGACCCACTTGAAGATGG+TGG + chr2_2:66848307-66848326 None:intergenic 50.0%
! ATGCAGATCTGGGATACTGC+TGG - chr2_2:66848923-66848942 Msa0266360:intron 50.0%
ACTCTTCTCGCCAGTGGTTA+AGG + chr2_2:66849045-66849064 None:intergenic 50.0%
TAAGGAACTCTTCTCGCCAG+TGG + chr2_2:66849051-66849070 None:intergenic 50.0%
TTAACCCCCCCGTGAACATA+TGG + chr2_2:66849335-66849354 None:intergenic 50.0%
! AAAGGCATGGTGTGCTTCCA+AGG - chr2_2:66849406-66849425 Msa0266360:intron 50.0%
AAGGCATGGTGTGCTTCCAA+GGG - chr2_2:66849407-66849426 Msa0266360:intron 50.0%
!! CTTTGAGACCTCTGCAAAGG+AGG - chr2_2:66849442-66849461 Msa0266360:intron 50.0%
CAAGAAGGACAAGTTGTCCC+AGG + chr2_2:66850043-66850062 None:intergenic 50.0%
! GATCTGGGATACTGCTGGTC+AGG - chr2_2:66848928-66848947 Msa0266360:intron 55.0%
! CTTGGTGTGGCTTTCTACCG+AGG - chr2_2:66848965-66848984 Msa0266360:intron 55.0%
GGACACAGCAATCTGCACCT+CGG + chr2_2:66848985-66849004 None:intergenic 55.0%
AGGCATGGTGTGCTTCCAAG+GGG - chr2_2:66849408-66849427 Msa0266360:intron 55.0%
! ACAATTGATGTCGGTGGCGG+TGG - chr2_2:66849884-66849903 Msa0266360:intron 55.0%
GCGGCGAGAATGAGAAGCCA+TGG + chr2_2:66847258-66847277 None:intergenic 60.0%
GGGATACTGCTGGTCAGGAG+AGG - chr2_2:66848933-66848952 Msa0266360:intron 60.0%
! TTGATGTCGGTGGCGGTGGA+CGG - chr2_2:66849888-66849907 Msa0266360:CDS 60.0%
GGACGGCAACAGAGGTCAAC+AGG - chr2_2:66849905-66849924 Msa0266360:CDS 60.0%
GTGGCGGTGGACGGCAACAG+AGG - chr2_2:66849897-66849916 Msa0266360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66847203 66850266 66847203 ID=Msa0266360;Name=Msa0266360
chr2_2 mRNA 66847203 66850266 66847203 ID=Msa0266360-mRNA-1;Parent=Msa0266360;Name=Msa0266360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=54|1|1|1|1|1|6|326|209
chr2_2 exon 66847203 66847598 66847203 ID=Msa0266360-mRNA-1:exon:21288;Parent=Msa0266360-mRNA-1
chr2_2 exon 66847935 66848080 66847935 ID=Msa0266360-mRNA-1:exon:21287;Parent=Msa0266360-mRNA-1
chr2_2 exon 66848225 66848305 66848225 ID=Msa0266360-mRNA-1:exon:21286;Parent=Msa0266360-mRNA-1
chr2_2 exon 66848394 66848540 66848394 ID=Msa0266360-mRNA-1:exon:21285;Parent=Msa0266360-mRNA-1
chr2_2 exon 66849887 66850013 66849887 ID=Msa0266360-mRNA-1:exon:21284;Parent=Msa0266360-mRNA-1
chr2_2 exon 66850154 66850266 66850154 ID=Msa0266360-mRNA-1:exon:21283;Parent=Msa0266360-mRNA-1
chr2_2 five_prime_UTR 66850213 66850266 66850213 ID=Msa0266360-mRNA-1:five_prime_utr;Parent=Msa0266360-mRNA-1
chr2_2 CDS 66850154 66850212 66850154 ID=Msa0266360-mRNA-1:cds;Parent=Msa0266360-mRNA-1
chr2_2 CDS 66849887 66850013 66849887 ID=Msa0266360-mRNA-1:cds;Parent=Msa0266360-mRNA-1
chr2_2 CDS 66848394 66848540 66848394 ID=Msa0266360-mRNA-1:cds;Parent=Msa0266360-mRNA-1
chr2_2 CDS 66848225 66848305 66848225 ID=Msa0266360-mRNA-1:cds;Parent=Msa0266360-mRNA-1
chr2_2 CDS 66847935 66848080 66847935 ID=Msa0266360-mRNA-1:cds;Parent=Msa0266360-mRNA-1
chr2_2 CDS 66847529 66847598 66847529 ID=Msa0266360-mRNA-1:cds;Parent=Msa0266360-mRNA-1
chr2_2 three_prime_UTR 66847203 66847528 66847203 ID=Msa0266360-mRNA-1:three_prime_utr;Parent=Msa0266360-mRNA-1
Gene Sequence

>Msa0266360

ATGGCTTCTCATTCTCGCCGCCGCATGTTATTGAAAGTCATCATCCTCGGTGATAGTGGGGTTGGCAAAACATCACTCATGAATCAGTATGTGAATCGAAAGTTTAGTAATCAGTATAAGGCTACCATTGGTGCTGATTTCCTTACCAAGGAAGTTCAAGTTGAAGACAGGTTGTTCACATTGCAGATCTGGGATACTGCTGGTCAGGAGAGGTTTCAAAGTCTTGGTGTGGCTTTCTACCGAGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGAAAACCTTAACCACTGGCGAGAAGAGTTCCTTATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTGGTGTTGGGAAACAAAGTAGATGTTGATGGTGGAAATAGCCGAGTTGTTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCCAAGGGGAATATACCATACTTTGAGACCTCTGCAAAGGAGGGTTTTAATGTTGAGGCTGCTTTTGAGTGTATTACCAAAAATGCTCTCAAGAATGAACCTGAAGAAGAATTATACATGCCAGAAACAATTGATGTCGGTGGCGGTGGACGGCAACAGAGGTCAACAGGCTGTGAATGTTGA
Protein sequence

>Msa0266360

MASHSRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQVEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECITKNALKNEPEEELYMPETIDVGGGGRQQRSTGCEC*