AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335800 MtrunA17_Chr2g0321081 98.851 174 2 0 1 174 1 174 1.37e-123 345
Msa0335800 MtrunA17_Chr7g0265921 67.742 155 48 1 20 174 14 166 8.67e-62 188
Msa0335800 MtrunA17_Chr1g0198271 56.329 158 68 1 17 173 11 168 4.65e-51 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335800 AT2G27740.1 59.649 171 68 1 1 171 1 170 4.84e-68 205
Msa0335800 AT2G36410.2 67.647 136 44 0 38 173 57 192 2.09e-61 189
Msa0335800 AT3G52920.2 68.889 135 42 0 38 172 28 162 4.09e-61 187
Msa0335800 AT3G09980.1 70.139 144 43 0 31 174 35 178 9.39e-60 184
Msa0335800 AT2G36410.1 66.187 139 44 1 38 173 57 195 2.51e-59 183
Msa0335800 AT3G52920.1 67.391 138 42 1 38 172 28 165 6.33e-59 182
Msa0335800 AT5G03660.1 66.418 134 45 0 38 171 36 169 2.24e-49 157
Msa0335800 AT3G52900.1 51.974 152 73 0 23 174 13 164 1.52e-48 155
Msa0335800 AT2G36355.1 51.299 154 69 2 22 173 5 154 1.73e-44 144
Msa0335800 AT2G27740.2 53.659 123 56 1 1 123 1 122 1.16e-41 136
Msa0335800 AT5G03660.3 63.793 116 42 0 38 153 36 151 8.83e-40 132
Msa0335800 AT2G36410.3 66.279 86 29 0 38 123 57 142 3.30e-35 120
Msa0335800 AT5G03660.2 53.731 134 40 1 38 171 36 147 1.00e-31 112
Msa0335800 AT2G36355.3 62.651 83 31 0 91 173 1 83 1.19e-30 107
Msa0335800 AT2G36355.2 61.628 86 33 0 88 173 27 112 1.47e-30 107
Msa0335800 AT2G36355.4 44.144 111 55 3 22 130 5 110 3.17e-22 87.0

Find 41 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTAACCTCCACTAATT+TGG 0.167435 2_4:+54977319 None:intergenic
AGAAATTGAGAGAAGAAAAT+TGG 0.229998 2_4:-54978655 Msa0335800:CDS
TTCTCGAATTCGCCGTAATT+AGG 0.276546 2_4:-54976938 Msa0335800:three_prime_UTR
ATTGCAACATCCTTCCTCTT+TGG 0.283049 2_4:+54978001 None:intergenic
TTTCATCTCTTCTTGGACTC+TGG 0.297684 2_4:+54978730 None:intergenic
GGGTCAAACCTGCCAGAAAA+AGG 0.317850 2_4:-54977933 Msa0335800:intron
GTGCAACATGTGAAGAATTC+AGG 0.351410 2_4:-54978768 Msa0335800:CDS
ACTCTTCTTTCCTCTACCTT+AGG 0.358190 2_4:+54978913 None:intergenic
TCTAGCAATGTTTAGAGAAA+AGG 0.359449 2_4:-54978682 Msa0335800:CDS
TTCTGGCAGGTTTGACCCAA+TGG 0.366095 2_4:+54977938 None:intergenic
AATTAGGATATTTGACTGTT+TGG 0.389046 2_4:-54976922 Msa0335800:three_prime_UTR
AAAATTGGAGGTTAGAGATA+AGG 0.419428 2_4:-54978640 Msa0335800:CDS
GAGTCCAAGAAGAGATGAAA+AGG 0.433573 2_4:-54978727 Msa0335800:CDS
AACAAAGAGTTGAAGCCATT+GGG 0.443322 2_4:-54977953 Msa0335800:CDS
TTTCAAAGAAAAGAGAAAAC+AGG 0.450500 2_4:-54978885 Msa0335800:five_prime_UTR
AGAAATTGCATAGGAGATTG+AGG 0.462032 2_4:-54978035 Msa0335800:intron
GAGGATAAGGATGAAGAAGC+TGG 0.468797 2_4:-54977171 Msa0335800:CDS
CGAAAAGGAAACAAAGAGAT+TGG 0.472358 2_4:-54978595 Msa0335800:CDS
TCAACTTGTTACCAAATTAG+TGG 0.474598 2_4:-54977330 Msa0335800:CDS
ACAGTCAAATATCCTAATTA+CGG 0.480380 2_4:+54976926 None:intergenic
GCTAGTGCAAGTAGCCTTGT+GGG 0.483609 2_4:-54977108 Msa0335800:three_prime_UTR
GAAATTGCATAGGAGATTGA+GGG 0.490039 2_4:-54978034 Msa0335800:intron
TAACAAAGAGTTGAAGCCAT+TGG 0.493465 2_4:-54977954 Msa0335800:CDS
TTTATAAGCACCTAAGGTAG+AGG 0.505239 2_4:-54978923 Msa0335800:five_prime_UTR
GATAAGGTTCATGCTCATCT+TGG 0.506717 2_4:-54978624 Msa0335800:CDS
AGGATATTTGACTGTTTGGT+AGG 0.507929 2_4:-54976918 Msa0335800:three_prime_UTR
TCATCTTGGTCGAGTCGAAA+AGG 0.517837 2_4:-54978610 Msa0335800:CDS
TGACTGAAAGTGAGAGGATA+AGG 0.518680 2_4:-54977184 Msa0335800:CDS
AAGAAGAGATGAAAAGGAAG+AGG 0.527146 2_4:-54978721 Msa0335800:CDS
AATTGAGAGAAGAAAATTGG+AGG 0.531288 2_4:-54978652 Msa0335800:CDS
AAAATTCTTATTATTTGATG+TGG 0.541533 2_4:-54977067 Msa0335800:three_prime_UTR
AGAATACAATGAAGCTCTTG+AGG 0.569694 2_4:-54977381 Msa0335800:CDS
TGCTAGTGCAAGTAGCCTTG+TGG 0.581364 2_4:-54977109 Msa0335800:three_prime_UTR
TGAGATTTGTGGAGCAGCAA+TGG 0.594907 2_4:-54978835 Msa0335800:exon
TTTCACAGATCCAAAGAGGA+AGG 0.618763 2_4:-54978011 Msa0335800:CDS
AGGGTTTCACAGATCCAAAG+AGG 0.622777 2_4:-54978015 Msa0335800:CDS
AGCTTGTGACTGAAAGTGAG+AGG 0.623994 2_4:-54977190 Msa0335800:CDS
ACTTGTTACCAAATTAGTGG+AGG 0.627774 2_4:-54977327 Msa0335800:intron
AACATCACACTGAACCCACA+AGG 0.656050 2_4:+54977094 None:intergenic
GATAAGGATGAAGAAGCTGG+AGG 0.694341 2_4:-54977168 Msa0335800:CDS
AGTTAGAAAGAAGATAGACA+TGG 0.715757 2_4:-54977978 Msa0335800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr2_4:54978372-54978391 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr2_4:54978372-54978391 None:intergenic 0.0%
!! ATATATATATATATATAGGA+AGG + chr2_4:54978368-54978387 None:intergenic 10.0%
!! ATATATATATATATATAGGA+AGG + chr2_4:54978368-54978387 None:intergenic 10.0%
!! TTATAATATCTTTACAACAT+AGG - chr2_4:54977980-54977999 Msa0335800:CDS 15.0%
!! GAAATTAAAGCAAATAATTA+AGG + chr2_4:54978090-54978109 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG - chr2_4:54978091-54978110 Msa0335800:intron 15.0%
!!! TTTTGTGAAACTATATTTTT+GGG - chr2_4:54978427-54978446 Msa0335800:intron 15.0%
!! AAAATTCTTATTATTTGATG+TGG - chr2_4:54978776-54978795 Msa0335800:CDS 15.0%
!! TTATAATATCTTTACAACAT+AGG - chr2_4:54977980-54977999 Msa0335800:CDS 15.0%
!! GAAATTAAAGCAAATAATTA+AGG + chr2_4:54978090-54978109 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG - chr2_4:54978091-54978110 Msa0335800:intron 15.0%
!!! TTTTGTGAAACTATATTTTT+GGG - chr2_4:54978427-54978446 Msa0335800:intron 15.0%
!! AAAATTCTTATTATTTGATG+TGG - chr2_4:54978776-54978795 Msa0335800:CDS 15.0%
!! TTTGATATTGTAGAAAATCA+CGG - chr2_4:54977486-54977505 Msa0335800:intron 20.0%
!! CAAACAAAGATTGTTTATAA+TGG + chr2_4:54977788-54977807 None:intergenic 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG + chr2_4:54978087-54978106 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG + chr2_4:54978118-54978137 None:intergenic 20.0%
!! ATATGCTTATTTAGTTGTTA+AGG - chr2_4:54978154-54978173 Msa0335800:intron 20.0%
!!! GTTTTGTGAAACTATATTTT+TGG - chr2_4:54978426-54978445 Msa0335800:intron 20.0%
!!! TTTGTGAAACTATATTTTTG+GGG - chr2_4:54978428-54978447 Msa0335800:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG + chr2_4:54978600-54978619 None:intergenic 20.0%
!!! AATATATTTTGCTGACTTTA+GGG - chr2_4:54978813-54978832 Msa0335800:CDS 20.0%
!! TTTGATATTGTAGAAAATCA+CGG - chr2_4:54977486-54977505 Msa0335800:intron 20.0%
!! CAAACAAAGATTGTTTATAA+TGG + chr2_4:54977788-54977807 None:intergenic 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG + chr2_4:54978087-54978106 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG + chr2_4:54978118-54978137 None:intergenic 20.0%
!! ATATGCTTATTTAGTTGTTA+AGG - chr2_4:54978154-54978173 Msa0335800:intron 20.0%
!!! GTTTTGTGAAACTATATTTT+TGG - chr2_4:54978426-54978445 Msa0335800:intron 20.0%
!!! TTTGTGAAACTATATTTTTG+GGG - chr2_4:54978428-54978447 Msa0335800:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG + chr2_4:54978600-54978619 None:intergenic 20.0%
!!! AATATATTTTGCTGACTTTA+GGG - chr2_4:54978813-54978832 Msa0335800:CDS 20.0%
!!! TTTTGTTTTATAAGCACCTA+AGG - chr2_4:54976914-54976933 Msa0335800:three_prime_UTR 25.0%
! TTTCAAAGAAAAGAGAAAAC+AGG - chr2_4:54976958-54976977 Msa0335800:three_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG - chr2_4:54977188-54977207 Msa0335800:CDS 25.0%
! CAAATTCAGTGTTTGTTTAT+TGG + chr2_4:54977294-54977313 None:intergenic 25.0%
! ATGATGTTTCATTGTTTGTT+TGG - chr2_4:54977327-54977346 Msa0335800:intron 25.0%
!!! ATTGTTTGTTTGGTTTTTAC+TGG - chr2_4:54977337-54977356 Msa0335800:CDS 25.0%
!!! TTCACTTGTTTGGTTTTTAT+TGG - chr2_4:54977390-54977409 Msa0335800:intron 25.0%
! TGTGCAAAGTTTCAAAATAA+TGG - chr2_4:54977433-54977452 Msa0335800:intron 25.0%
! AAGTTTCAAAATAATGGTCA+CGG - chr2_4:54977439-54977458 Msa0335800:intron 25.0%
!!! CCTTTTGATGACATAATATA+TGG + chr2_4:54978119-54978138 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG - chr2_4:54978116-54978135 Msa0335800:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG - chr2_4:54978119-54978138 Msa0335800:intron 25.0%
!!! TTTTTCCTTTAACTTTAGCT+TGG - chr2_4:54978249-54978268 Msa0335800:intron 25.0%
!! CAGACTGAATTCAATTTTAT+TGG - chr2_4:54978300-54978319 Msa0335800:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG - chr2_4:54978489-54978508 Msa0335800:intron 25.0%
!!! CAATATATTTTGCTGACTTT+AGG - chr2_4:54978812-54978831 Msa0335800:CDS 25.0%
!! TGTTTAATGCACACTTTTAT+TGG + chr2_4:54978847-54978866 None:intergenic 25.0%
! ACAGTCAAATATCCTAATTA+CGG + chr2_4:54978920-54978939 None:intergenic 25.0%
! AATTAGGATATTTGACTGTT+TGG - chr2_4:54978921-54978940 Msa0335800:five_prime_UTR 25.0%
!!! TTTTGTTTTATAAGCACCTA+AGG - chr2_4:54976914-54976933 Msa0335800:three_prime_UTR 25.0%
! TTTCAAAGAAAAGAGAAAAC+AGG - chr2_4:54976958-54976977 Msa0335800:three_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG - chr2_4:54977188-54977207 Msa0335800:CDS 25.0%
! CAAATTCAGTGTTTGTTTAT+TGG + chr2_4:54977294-54977313 None:intergenic 25.0%
! ATGATGTTTCATTGTTTGTT+TGG - chr2_4:54977327-54977346 Msa0335800:intron 25.0%
!!! ATTGTTTGTTTGGTTTTTAC+TGG - chr2_4:54977337-54977356 Msa0335800:CDS 25.0%
!!! TTCACTTGTTTGGTTTTTAT+TGG - chr2_4:54977390-54977409 Msa0335800:intron 25.0%
! TGTGCAAAGTTTCAAAATAA+TGG - chr2_4:54977433-54977452 Msa0335800:intron 25.0%
! AAGTTTCAAAATAATGGTCA+CGG - chr2_4:54977439-54977458 Msa0335800:intron 25.0%
!!! CCTTTTGATGACATAATATA+TGG + chr2_4:54978119-54978138 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG - chr2_4:54978116-54978135 Msa0335800:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG - chr2_4:54978119-54978138 Msa0335800:intron 25.0%
!!! TTTTTCCTTTAACTTTAGCT+TGG - chr2_4:54978249-54978268 Msa0335800:intron 25.0%
!! CAGACTGAATTCAATTTTAT+TGG - chr2_4:54978300-54978319 Msa0335800:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG - chr2_4:54978489-54978508 Msa0335800:intron 25.0%
!!! CAATATATTTTGCTGACTTT+AGG - chr2_4:54978812-54978831 Msa0335800:CDS 25.0%
!! TGTTTAATGCACACTTTTAT+TGG + chr2_4:54978847-54978866 None:intergenic 25.0%
! ACAGTCAAATATCCTAATTA+CGG + chr2_4:54978920-54978939 None:intergenic 25.0%
! AATTAGGATATTTGACTGTT+TGG - chr2_4:54978921-54978940 Msa0335800:five_prime_UTR 25.0%
! AAAAAGTGTGTTGAGATTTG+TGG - chr2_4:54976997-54977016 Msa0335800:three_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG + chr2_4:54977039-54977058 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG - chr2_4:54977161-54977180 Msa0335800:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG - chr2_4:54977191-54977210 Msa0335800:CDS 30.0%
AAAATTGGAGGTTAGAGATA+AGG - chr2_4:54977203-54977222 Msa0335800:intron 30.0%
ACAATATAACGTTGAAATCG+TGG - chr2_4:54977559-54977578 Msa0335800:intron 30.0%
!! TTTTAAAAAACGGTCTGCAA+CGG + chr2_4:54977594-54977613 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG + chr2_4:54977604-54977623 None:intergenic 30.0%
TAAAGCTAATCCTTAAATCC+TGG + chr2_4:54977623-54977642 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG - chr2_4:54977799-54977818 Msa0335800:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG - chr2_4:54977865-54977884 Msa0335800:intron 30.0%
! TGGAAAATCTAACCTTTTTC+TGG + chr2_4:54977925-54977944 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG + chr2_4:54977945-54977964 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG - chr2_4:54977992-54978011 Msa0335800:CDS 30.0%
CAAAGAAAGCAAAACACATT+GGG + chr2_4:54978030-54978049 None:intergenic 30.0%
TCAAAGAAAGCAAAACACAT+TGG + chr2_4:54978031-54978050 None:intergenic 30.0%
! AAGAGATTGACTTTGTAACT+AGG - chr2_4:54978276-54978295 Msa0335800:intron 30.0%
!!! AACTATATTTTTGGGGTTAC+AGG - chr2_4:54978435-54978454 Msa0335800:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG - chr2_4:54978513-54978532 Msa0335800:intron 30.0%
ATTTCTAACCTCCACTAATT+TGG + chr2_4:54978527-54978546 None:intergenic 30.0%
! CTTTGCATTATGTGAACTTT+TGG - chr2_4:54978627-54978646 Msa0335800:CDS 30.0%
! AAAAAGTGTGTTGAGATTTG+TGG - chr2_4:54976997-54977016 Msa0335800:three_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG + chr2_4:54977039-54977058 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG - chr2_4:54977161-54977180 Msa0335800:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG - chr2_4:54977191-54977210 Msa0335800:CDS 30.0%
AAAATTGGAGGTTAGAGATA+AGG - chr2_4:54977203-54977222 Msa0335800:intron 30.0%
ACAATATAACGTTGAAATCG+TGG - chr2_4:54977559-54977578 Msa0335800:intron 30.0%
!! TTTTAAAAAACGGTCTGCAA+CGG + chr2_4:54977594-54977613 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG + chr2_4:54977604-54977623 None:intergenic 30.0%
TAAAGCTAATCCTTAAATCC+TGG + chr2_4:54977623-54977642 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG - chr2_4:54977799-54977818 Msa0335800:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG - chr2_4:54977865-54977884 Msa0335800:intron 30.0%
! TGGAAAATCTAACCTTTTTC+TGG + chr2_4:54977925-54977944 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG + chr2_4:54977945-54977964 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG - chr2_4:54977992-54978011 Msa0335800:CDS 30.0%
CAAAGAAAGCAAAACACATT+GGG + chr2_4:54978030-54978049 None:intergenic 30.0%
TCAAAGAAAGCAAAACACAT+TGG + chr2_4:54978031-54978050 None:intergenic 30.0%
! AAGAGATTGACTTTGTAACT+AGG - chr2_4:54978276-54978295 Msa0335800:intron 30.0%
!!! AACTATATTTTTGGGGTTAC+AGG - chr2_4:54978435-54978454 Msa0335800:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG - chr2_4:54978513-54978532 Msa0335800:intron 30.0%
ATTTCTAACCTCCACTAATT+TGG + chr2_4:54978527-54978546 None:intergenic 30.0%
! CTTTGCATTATGTGAACTTT+TGG - chr2_4:54978627-54978646 Msa0335800:CDS 30.0%
TTTATAAGCACCTAAGGTAG+AGG - chr2_4:54976920-54976939 Msa0335800:three_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG + chr2_4:54977123-54977142 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG - chr2_4:54977122-54977141 Msa0335800:exon 35.0%
CGAAAAGGAAACAAAGAGAT+TGG - chr2_4:54977248-54977267 Msa0335800:intron 35.0%
TGTGCAAAGTTTCACTTGTT+TGG - chr2_4:54977380-54977399 Msa0335800:CDS 35.0%
CAATATCAAAGATTACTGCG+TGG + chr2_4:54977476-54977495 None:intergenic 35.0%
TCAAATTGTGGTCGCTATTT+CGG + chr2_4:54977531-54977550 None:intergenic 35.0%
TAGCGACCACAATTTGATAT+CGG - chr2_4:54977534-54977553 Msa0335800:intron 35.0%
TTGTCACCGATATCAAATTG+TGG + chr2_4:54977543-54977562 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG - chr2_4:54977602-54977621 Msa0335800:intron 35.0%
AAAACCTTGACCAGGATTTA+AGG - chr2_4:54977610-54977629 Msa0335800:intron 35.0%
TAATCCTTAAATCCTGGTCA+AGG + chr2_4:54977617-54977636 None:intergenic 35.0%
!! CTAACTAGCTTGTTTCATAC+AGG + chr2_4:54977680-54977699 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG - chr2_4:54977808-54977827 Msa0335800:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG - chr2_4:54977809-54977828 Msa0335800:intron 35.0%
TAACAAAGAGTTGAAGCCAT+TGG - chr2_4:54977889-54977908 Msa0335800:intron 35.0%
AACAAAGAGTTGAAGCCATT+GGG - chr2_4:54977890-54977909 Msa0335800:intron 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG + chr2_4:54977921-54977940 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG + chr2_4:54978059-54978078 None:intergenic 35.0%
!! TTCCTTTAACTTTAGCTTGG+TGG - chr2_4:54978252-54978271 Msa0335800:intron 35.0%
TACCACCAAGCTAAAGTTAA+AGG + chr2_4:54978257-54978276 None:intergenic 35.0%
AGAATACAATGAAGCTCTTG+AGG - chr2_4:54978462-54978481 Msa0335800:intron 35.0%
! ACTTGTTACCAAATTAGTGG+AGG - chr2_4:54978516-54978535 Msa0335800:intron 35.0%
AGGATATTTGACTGTTTGGT+AGG - chr2_4:54978925-54978944 Msa0335800:five_prime_UTR 35.0%
TTTATAAGCACCTAAGGTAG+AGG - chr2_4:54976920-54976939 Msa0335800:three_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG + chr2_4:54977123-54977142 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG - chr2_4:54977122-54977141 Msa0335800:exon 35.0%
CGAAAAGGAAACAAAGAGAT+TGG - chr2_4:54977248-54977267 Msa0335800:intron 35.0%
TGTGCAAAGTTTCACTTGTT+TGG - chr2_4:54977380-54977399 Msa0335800:CDS 35.0%
CAATATCAAAGATTACTGCG+TGG + chr2_4:54977476-54977495 None:intergenic 35.0%
TCAAATTGTGGTCGCTATTT+CGG + chr2_4:54977531-54977550 None:intergenic 35.0%
TAGCGACCACAATTTGATAT+CGG - chr2_4:54977534-54977553 Msa0335800:intron 35.0%
TTGTCACCGATATCAAATTG+TGG + chr2_4:54977543-54977562 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG - chr2_4:54977602-54977621 Msa0335800:intron 35.0%
AAAACCTTGACCAGGATTTA+AGG - chr2_4:54977610-54977629 Msa0335800:intron 35.0%
TAATCCTTAAATCCTGGTCA+AGG + chr2_4:54977617-54977636 None:intergenic 35.0%
!! CTAACTAGCTTGTTTCATAC+AGG + chr2_4:54977680-54977699 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG - chr2_4:54977808-54977827 Msa0335800:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG - chr2_4:54977809-54977828 Msa0335800:intron 35.0%
TAACAAAGAGTTGAAGCCAT+TGG - chr2_4:54977889-54977908 Msa0335800:intron 35.0%
AACAAAGAGTTGAAGCCATT+GGG - chr2_4:54977890-54977909 Msa0335800:intron 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG + chr2_4:54977921-54977940 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG + chr2_4:54978059-54978078 None:intergenic 35.0%
!! TTCCTTTAACTTTAGCTTGG+TGG - chr2_4:54978252-54978271 Msa0335800:intron 35.0%
TACCACCAAGCTAAAGTTAA+AGG + chr2_4:54978257-54978276 None:intergenic 35.0%
AGAATACAATGAAGCTCTTG+AGG - chr2_4:54978462-54978481 Msa0335800:intron 35.0%
! ACTTGTTACCAAATTAGTGG+AGG - chr2_4:54978516-54978535 Msa0335800:intron 35.0%
AGGATATTTGACTGTTTGGT+AGG - chr2_4:54978925-54978944 Msa0335800:five_prime_UTR 35.0%
ACTCTTCTTTCCTCTACCTT+AGG + chr2_4:54976933-54976952 None:intergenic 40.0%
GTGCAACATGTGAAGAATTC+AGG - chr2_4:54977075-54977094 Msa0335800:three_prime_UTR 40.0%
TTTCATCTCTTCTTGGACTC+TGG + chr2_4:54977116-54977135 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG - chr2_4:54977116-54977135 Msa0335800:three_prime_UTR 40.0%
GATAAGGTTCATGCTCATCT+TGG - chr2_4:54977219-54977238 Msa0335800:intron 40.0%
TTTCACAGATCCAAAGAGGA+AGG - chr2_4:54977832-54977851 Msa0335800:intron 40.0%
ATTGCAACATCCTTCCTCTT+TGG + chr2_4:54977845-54977864 None:intergenic 40.0%
TGTCATCAAAAGGAGGCTAT+AGG - chr2_4:54978126-54978145 Msa0335800:intron 40.0%
TGACTGAAAGTGAGAGGATA+AGG - chr2_4:54978659-54978678 Msa0335800:CDS 40.0%
TTCTCGAATTCGCCGTAATT+AGG - chr2_4:54978905-54978924 Msa0335800:five_prime_UTR 40.0%
ACTCTTCTTTCCTCTACCTT+AGG + chr2_4:54976933-54976952 None:intergenic 40.0%
GTGCAACATGTGAAGAATTC+AGG - chr2_4:54977075-54977094 Msa0335800:three_prime_UTR 40.0%
TTTCATCTCTTCTTGGACTC+TGG + chr2_4:54977116-54977135 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG - chr2_4:54977116-54977135 Msa0335800:three_prime_UTR 40.0%
GATAAGGTTCATGCTCATCT+TGG - chr2_4:54977219-54977238 Msa0335800:intron 40.0%
TTTCACAGATCCAAAGAGGA+AGG - chr2_4:54977832-54977851 Msa0335800:intron 40.0%
ATTGCAACATCCTTCCTCTT+TGG + chr2_4:54977845-54977864 None:intergenic 40.0%
TGTCATCAAAAGGAGGCTAT+AGG - chr2_4:54978126-54978145 Msa0335800:intron 40.0%
TGACTGAAAGTGAGAGGATA+AGG - chr2_4:54978659-54978678 Msa0335800:CDS 40.0%
TTCTCGAATTCGCCGTAATT+AGG - chr2_4:54978905-54978924 Msa0335800:five_prime_UTR 40.0%
TGAGATTTGTGGAGCAGCAA+TGG - chr2_4:54977008-54977027 Msa0335800:three_prime_UTR 45.0%
TCATCTTGGTCGAGTCGAAA+AGG - chr2_4:54977233-54977252 Msa0335800:intron 45.0%
AGGGTTTCACAGATCCAAAG+AGG - chr2_4:54977828-54977847 Msa0335800:intron 45.0%
AGCTTGTGACTGAAAGTGAG+AGG - chr2_4:54978653-54978672 Msa0335800:CDS 45.0%
GAGGATAAGGATGAAGAAGC+TGG - chr2_4:54978672-54978691 Msa0335800:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG - chr2_4:54978675-54978694 Msa0335800:CDS 45.0%
AACATCACACTGAACCCACA+AGG + chr2_4:54978752-54978771 None:intergenic 45.0%
TTTGACTGTTTGGTAGGACC+TGG - chr2_4:54978931-54978950 Msa0335800:five_prime_UTR 45.0%
TGAGATTTGTGGAGCAGCAA+TGG - chr2_4:54977008-54977027 Msa0335800:three_prime_UTR 45.0%
TCATCTTGGTCGAGTCGAAA+AGG - chr2_4:54977233-54977252 Msa0335800:intron 45.0%
AGGGTTTCACAGATCCAAAG+AGG - chr2_4:54977828-54977847 Msa0335800:intron 45.0%
AGCTTGTGACTGAAAGTGAG+AGG - chr2_4:54978653-54978672 Msa0335800:CDS 45.0%
GAGGATAAGGATGAAGAAGC+TGG - chr2_4:54978672-54978691 Msa0335800:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG - chr2_4:54978675-54978694 Msa0335800:CDS 45.0%
AACATCACACTGAACCCACA+AGG + chr2_4:54978752-54978771 None:intergenic 45.0%
TTCTGGCAGGTTTGACCCAA+TGG + chr2_4:54977908-54977927 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG - chr2_4:54977910-54977929 Msa0335800:intron 50.0%
! TGCTAGTGCAAGTAGCCTTG+TGG - chr2_4:54978734-54978753 Msa0335800:CDS 50.0%
!! GCTAGTGCAAGTAGCCTTGT+GGG - chr2_4:54978735-54978754 Msa0335800:CDS 50.0%
TTCTGGCAGGTTTGACCCAA+TGG + chr2_4:54977908-54977927 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG - chr2_4:54977910-54977929 Msa0335800:intron 50.0%
! TGCTAGTGCAAGTAGCCTTG+TGG - chr2_4:54978734-54978753 Msa0335800:CDS 50.0%
!! GCTAGTGCAAGTAGCCTTGT+GGG - chr2_4:54978735-54978754 Msa0335800:CDS 50.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54976913 54978952 54976913 ID=Msa0335800;Name=Msa0335800
chr2_4 mRNA 54976913 54978952 54976913 ID=Msa0335800-mRNA-1;Parent=Msa0335800;Name=Msa0335800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=114|1|1|1|1|1|4|223|174
chr2_4 exon 54976913 54977210 54976913 ID=Msa0335800-mRNA-1:exon:16649;Parent=Msa0335800-mRNA-1
chr2_4 exon 54977328 54977408 54977328 ID=Msa0335800-mRNA-1:exon:16648;Parent=Msa0335800-mRNA-1
chr2_4 exon 54977934 54978044 54977934 ID=Msa0335800-mRNA-1:exon:16647;Parent=Msa0335800-mRNA-1
chr2_4 exon 54978581 54978952 54978581 ID=Msa0335800-mRNA-1:exon:16646;Parent=Msa0335800-mRNA-1
chr2_4 five_prime_UTR 54978839 54978952 54978839 ID=Msa0335800-mRNA-1:five_prime_utr;Parent=Msa0335800-mRNA-1
chr2_4 CDS 54978581 54978838 54978581 ID=Msa0335800-mRNA-1:cds;Parent=Msa0335800-mRNA-1
chr2_4 CDS 54977934 54978044 54977934 ID=Msa0335800-mRNA-1:cds;Parent=Msa0335800-mRNA-1
chr2_4 CDS 54977328 54977408 54977328 ID=Msa0335800-mRNA-1:cds;Parent=Msa0335800-mRNA-1
chr2_4 CDS 54977136 54977210 54977136 ID=Msa0335800-mRNA-1:cds;Parent=Msa0335800-mRNA-1
chr2_4 three_prime_UTR 54976913 54977135 54976913 ID=Msa0335800-mRNA-1:three_prime_utr;Parent=Msa0335800-mRNA-1
Gene Sequence

>Msa0335800

ATGGCAACACCAAAAAGATCATATGATCAGCAACAACAACTACAGATTGTGCAACATGTGAAGAATTCAGGAATGATTAACAACATCCAGAGTCCAAGAAGAGATGAAAAGGAAGAGGAAATGTCAAGATCAGTTCTAGCAATGTTTAGAGAAAAGGAAGAAGAAATTGAGAGAAGAAAATTGGAGGTTAGAGATAAGGTTCATGCTCATCTTGGTCGAGTCGAAAAGGAAACAAAGAGATTGGCTGAGATAAGAGAAGAGATTGAGGGTTTCACAGATCCAAAGAGGAAGGATGTTGCAATAGTTAGAAAGAAGATAGACATGGTTAACAAAGAGTTGAAGCCATTGGGTCAAACCTGCCAGAAAAAGGAGAGAGAATACAATGAAGCTCTTGAGGCTTTCAATGAGAAAAACAAAGAAAAGGCTCAACTTGTTACCAAATTAGTGGAGCTTGTGACTGAAAGTGAGAGGATAAGGATGAAGAAGCTGGAGGATCTAAGCAAAAATATAGATACACTTCACTAA

Protein sequence

>Msa0335800

MATPKRSYDQQQQLQIVQHVKNSGMINNIQSPRRDEKEEEMSRSVLAMFREKEEEIERRKLEVRDKVHAHLGRVEKETKRLAEIREEIEGFTDPKRKDVAIVRKKIDMVNKELKPLGQTCQKKEREYNEALEAFNEKNKEKAQLVTKLVELVTESERIRMKKLEDLSKNIDTLH*