Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132870 | XP_003592155.1 | 96.970 | 297 | 9 | 0 | 1 | 297 | 1 | 297 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132870 | sp|P51614|CHIT3_VITVI | 69.416 | 291 | 83 | 4 | 1 | 286 | 1 | 290 | 3.90e-144 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132870 | G7IDV3 | 96.970 | 297 | 9 | 0 | 1 | 297 | 1 | 297 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa0132870 | 0.818053 | 2.395084e-52 | -8.615850e-47 |
| Msa0037720 | Msa0132870 | 0.809123 | 2.211064e-50 | -8.615850e-47 |
| Msa0055030 | Msa0132870 | 0.801073 | 1.069497e-48 | -8.615850e-47 |
| Msa0076640 | Msa0132870 | 0.818751 | 1.664723e-52 | -8.615850e-47 |
| Msa0132870 | Msa0145430 | 0.807199 | 5.680763e-50 | -8.615850e-47 |
| Msa0132870 | Msa0146210 | 0.817989 | 2.477231e-52 | -8.615850e-47 |
| Msa0132870 | Msa0214800 | 0.838639 | 2.552405e-57 | -8.615850e-47 |
| Msa0132870 | Msa0224210 | 0.812796 | 3.540541e-51 | -8.615850e-47 |
| Msa0132870 | Msa0242720 | 0.826279 | 2.959736e-54 | -8.615850e-47 |
| Msa0132870 | Msa0294200 | 0.839569 | 1.465511e-57 | -8.615850e-47 |
| Msa0132870 | Msa0303900 | 0.807705 | 4.436475e-50 | -8.615850e-47 |
| Msa0132870 | Msa0322200 | 0.815044 | 1.130771e-51 | -8.615850e-47 |
| Msa0132870 | Msa0333770 | 0.814986 | 1.165106e-51 | -8.615850e-47 |
| Msa0132870 | Msa0373550 | 0.804039 | 2.615680e-49 | -8.615850e-47 |
| Msa0132870 | Msa0374290 | 0.803902 | 2.793427e-49 | -8.615850e-47 |
| Msa0132870 | Msa0390790 | 0.816039 | 6.790100e-52 | -8.615850e-47 |
| Msa0132870 | Msa0402800 | 0.807781 | 4.274638e-50 | -8.615850e-47 |
| Msa0132870 | Msa0405200 | 0.810683 | 1.020635e-50 | -8.615850e-47 |
| Msa0132870 | Msa0468660 | 0.807522 | 4.851150e-50 | -8.615850e-47 |
| Msa0132870 | Msa0480530 | 0.823359 | 1.445334e-53 | -8.615850e-47 |
| Msa0132870 | Msa0480540 | 0.815439 | 9.238763e-52 | -8.615850e-47 |
| Msa0132870 | Msa0480550 | 0.812954 | 3.268872e-51 | -8.615850e-47 |
| Msa0132870 | Msa0497860 | 0.813023 | 3.157168e-51 | -8.615850e-47 |
| Msa0132870 | Msa0513670 | 0.806581 | 7.674302e-50 | -8.615850e-47 |
| Msa0132870 | Msa0559440 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa0132870 | Msa0686810 | 0.802463 | 5.543078e-49 | -8.615850e-47 |
| Msa0132870 | Msa0741170 | 0.801804 | 7.575034e-49 | -8.615850e-47 |
| Msa0132870 | Msa0744540 | 0.826652 | 2.412043e-54 | -8.615850e-47 |
| Msa0132870 | Msa0744550 | 0.823886 | 1.088176e-53 | -8.615850e-47 |
| Msa0132870 | Msa0744560 | 0.815329 | 9.775525e-52 | -8.615850e-47 |
| Msa0132870 | Msa0815650 | 0.822170 | 2.733245e-53 | -8.615850e-47 |
| Msa0132870 | Msa0826360 | 0.822048 | 2.918345e-53 | -8.615850e-47 |
| Msa0132870 | Msa0826370 | 0.845690 | 3.470112e-59 | -8.615850e-47 |
| Msa0132870 | Msa0826380 | 0.831607 | 1.516917e-55 | -8.615850e-47 |
| Msa0132870 | Msa0826450 | 0.830402 | 2.997539e-55 | -8.615850e-47 |
| Msa0132870 | Msa0865810 | 0.836098 | 1.142097e-56 | -8.615850e-47 |
| Msa0132870 | Msa0865820 | 0.805027 | 1.627487e-49 | -8.615850e-47 |
| Msa0132870 | Msa0865830 | 0.816562 | 5.186874e-52 | -8.615850e-47 |
| Msa0132870 | Msa0940780 | 0.806540 | 7.826720e-50 | -8.615850e-47 |
| Msa0132870 | Msa1041250 | 0.847955 | 8.334485e-60 | -8.615850e-47 |
| Msa0132870 | Msa1077970 | 0.802106 | 6.565291e-49 | -8.615850e-47 |
| Msa0132870 | Msa1082080 | 0.818238 | 2.175408e-52 | -8.615850e-47 |
| Msa0132870 | Msa1157200 | 0.813518 | 2.458254e-51 | -8.615850e-47 |
| Msa0132870 | Msa1165670 | 0.808957 | 2.399188e-50 | -8.615850e-47 |
| Msa0132870 | Msa1174280 | 0.815209 | 1.039358e-51 | -8.615850e-47 |
| Msa0132870 | Msa1179340 | 0.803344 | 3.645687e-49 | -8.615850e-47 |
| Msa0132870 | Msa1202470 | 0.805081 | 1.585377e-49 | -8.615850e-47 |
| Msa0132870 | Msa1344930 | 0.804798 | 1.817279e-49 | -8.615850e-47 |
| Msa0132870 | Msa1366480 | 0.831463 | 1.645524e-55 | -8.615850e-47 |
| Msa0132870 | Msa1373990 | 0.820832 | 5.567657e-53 | -8.615850e-47 |
| Msa0132870 | Msa1401110 | 0.806613 | 7.555750e-50 | -8.615850e-47 |
| Msa0132870 | Msa1411370 | 0.804976 | 1.667884e-49 | -8.615850e-47 |
| Msa0132870 | Msa1459920 | 0.837479 | 5.072936e-57 | -8.615850e-47 |
| Msa0132870 | Msa1459930 | 0.801346 | 9.405114e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132870 | MtrunA17_Chr1g0202261 | 96.970 | 297 | 9 | 0 | 1 | 297 | 1 | 297 | 0.0 | 592 |
| Msa0132870 | MtrunA17_Chr1g0202281 | 70.805 | 298 | 79 | 4 | 1 | 297 | 20 | 310 | 5.29e-150 | 422 |
| Msa0132870 | MtrunA17_Chr7g0240891 | 67.586 | 290 | 88 | 4 | 5 | 293 | 10 | 294 | 3.08e-140 | 397 |
| Msa0132870 | MtrunA17_Chr1g0202241 | 64.505 | 293 | 98 | 6 | 7 | 297 | 8 | 296 | 4.97e-134 | 381 |
| Msa0132870 | MtrunA17_Chr5g0418461 | 63.946 | 294 | 101 | 3 | 1 | 293 | 1 | 290 | 1.76e-133 | 380 |
| Msa0132870 | MtrunA17_Chr1g0202231 | 61.856 | 291 | 106 | 5 | 7 | 295 | 9 | 296 | 4.21e-127 | 365 |
| Msa0132870 | MtrunA17_Chr8g0361941 | 62.284 | 289 | 105 | 3 | 7 | 293 | 8 | 294 | 1.09e-123 | 355 |
| Msa0132870 | MtrunA17_Chr7g0274861 | 60.417 | 288 | 89 | 2 | 7 | 293 | 8 | 271 | 9.09e-123 | 352 |
| Msa0132870 | MtrunA17_Chr2g0331781 | 57.333 | 300 | 117 | 5 | 8 | 297 | 15 | 313 | 3.25e-120 | 348 |
| Msa0132870 | MtrunA17_Chr7g0275231 | 56.207 | 290 | 124 | 2 | 11 | 297 | 14 | 303 | 1.28e-114 | 332 |
| Msa0132870 | MtrunA17_Chr2g0300101 | 55.282 | 284 | 119 | 4 | 14 | 293 | 16 | 295 | 5.83e-105 | 309 |
| Msa0132870 | MtrunA17_Chr2g0300141 | 52.982 | 285 | 125 | 5 | 14 | 293 | 16 | 296 | 7.77e-98 | 291 |
| Msa0132870 | MtrunA17_Chr2g0300081 | 52.982 | 285 | 125 | 5 | 14 | 293 | 18 | 298 | 9.04e-98 | 291 |
| Msa0132870 | MtrunA17_Chr2g0300051 | 49.123 | 285 | 132 | 6 | 14 | 293 | 16 | 292 | 1.83e-86 | 261 |
| Msa0132870 | MtrunA17_Chr2g0300181 | 43.098 | 297 | 152 | 10 | 9 | 293 | 8 | 299 | 4.90e-73 | 228 |
| Msa0132870 | MtrunA17_Chr6g0459141 | 35.842 | 279 | 107 | 10 | 21 | 297 | 23 | 231 | 9.82e-45 | 151 |
| Msa0132870 | MtrunA17_Chr2g0300161 | 50.993 | 151 | 70 | 2 | 16 | 166 | 19 | 165 | 4.89e-41 | 140 |
| Msa0132870 | MtrunA17_Chr2g0300171 | 53.097 | 113 | 48 | 3 | 186 | 293 | 1 | 113 | 6.51e-36 | 126 |
| Msa0132870 | MtrunA17_Chr2g0300151 | 45.752 | 153 | 73 | 3 | 2 | 147 | 3 | 152 | 3.11e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132870 | AT5G24090.1 | 63.333 | 300 | 106 | 3 | 1 | 297 | 4 | 302 | 6.59e-143 | 404 |
Find 57 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTTGATTCCTTTATTT+TGG | 0.131017 | 1_3:-64141188 | None:intergenic |
| TTGTGAATTCATGGAATAAA+TGG | 0.242224 | 1_3:+64141577 | Msa0132870:CDS |
| AACTTGGTTCCACCGAAAAT+TGG | 0.244758 | 1_3:+64141367 | Msa0132870:CDS |
| CTTAAAGGGTATAGTAGATA+TGG | 0.254089 | 1_3:+64141408 | Msa0132870:CDS |
| TGACCTGCCAGATTCATTTC+AGG | 0.274239 | 1_3:-64141108 | None:intergenic |
| CTTTCAATTGGTGGTGGAAT+TGG | 0.287500 | 1_3:+64141213 | Msa0132870:CDS |
| AGGTTCCTTCGTTGCCATTT+TGG | 0.290608 | 1_3:-64141008 | None:intergenic |
| GCAATCTATTGGGGCCAAAA+TGG | 0.300822 | 1_3:+64140994 | Msa0132870:CDS |
| GGGTATAGCACTTCTATTAT+TGG | 0.304491 | 1_3:+64141774 | Msa0132870:CDS |
| TAACTAACCTTGTGAATTCA+TGG | 0.311751 | 1_3:+64141568 | Msa0132870:CDS |
| AATCCACCTTGTCAATATAA+TGG | 0.323098 | 1_3:+64141540 | Msa0132870:CDS |
| CTGGTGGCATAGCAATCTAT+TGG | 0.352724 | 1_3:+64140983 | Msa0132870:CDS |
| ATCAAAGATTGCCAAAATAA+AGG | 0.357615 | 1_3:+64141177 | Msa0132870:CDS |
| GACCGTTACCGAATTTGTTT+AGG | 0.359199 | 1_3:-64141080 | None:intergenic |
| TTGGGCACTGCACTTGAAAC+AGG | 0.362436 | 1_3:+64141483 | Msa0132870:CDS |
| TGGTGGCATAGCAATCTATT+GGG | 0.384033 | 1_3:+64140984 | Msa0132870:CDS |
| ATAGCTTTCCTAAACAAATT+CGG | 0.403876 | 1_3:+64141072 | Msa0132870:CDS |
| TGCCGGAATAAAACCACTTC+CGG | 0.411953 | 1_3:-64141658 | None:intergenic |
| GGTTGCGCATGCTTCGGATA+AGG | 0.415599 | 1_3:-64141028 | None:intergenic |
| CTACTCTTTATCTTCAATTG+AGG | 0.422344 | 1_3:+64141239 | Msa0132870:CDS |
| AAGTCATCTTCAAGACCATT+AGG | 0.427426 | 1_3:+64141309 | Msa0132870:CDS |
| TTATCCGAAGCATGCGCAAC+CGG | 0.438403 | 1_3:+64141030 | Msa0132870:CDS |
| TCTACAGCGGCGGCCGGAAG+TGG | 0.441284 | 1_3:+64141645 | Msa0132870:CDS |
| TCAAACCCCTGAAATGAATC+TGG | 0.443417 | 1_3:+64141101 | Msa0132870:CDS |
| TCTAAAACAGCATCACCTAA+TGG | 0.445847 | 1_3:-64141324 | None:intergenic |
| CCGGCATCTACAGCGGCGGC+CGG | 0.451172 | 1_3:+64141639 | Msa0132870:CDS |
| AGGTTTCATGATTTGCAGAC+TGG | 0.456803 | 1_3:+64141753 | Msa0132870:CDS |
| GTGCATGAATTTGGAAGTGA+TGG | 0.468935 | 1_3:-64141138 | None:intergenic |
| TGGACTAGCACTGTTCCAGC+TGG | 0.478277 | 1_3:+64141597 | Msa0132870:CDS |
| CTTGTTGCAACTTCCCATGC+TGG | 0.478479 | 1_3:+64140964 | Msa0132870:CDS |
| AGTATGGAGGAGTGATGCTT+TGG | 0.487463 | 1_3:+64141727 | Msa0132870:CDS |
| GACCTGCCAGATTCATTTCA+GGG | 0.491520 | 1_3:-64141107 | None:intergenic |
| GATTGCTATGCCACCAGCAT+GGG | 0.506152 | 1_3:-64140977 | None:intergenic |
| CCGGCCGCCGCTGTAGATGC+CGG | 0.519785 | 1_3:-64141639 | None:intergenic |
| ACCCCTGAAATGAATCTGGC+AGG | 0.536071 | 1_3:+64141105 | Msa0132870:CDS |
| TCTGAAGTCAACACATCTGC+CGG | 0.536946 | 1_3:-64141675 | None:intergenic |
| TTATCTGGAATTGGACATTG+AGG | 0.543911 | 1_3:-64141456 | None:intergenic |
| GGTTTCATGATTTGCAGACT+GGG | 0.544792 | 1_3:+64141754 | Msa0132870:CDS |
| GAGGAGTGATGCTTTGGTCA+AGG | 0.544888 | 1_3:+64141733 | Msa0132870:CDS |
| TTATGGAACACTTTCTTGGG+TGG | 0.560429 | 1_3:+64141285 | Msa0132870:CDS |
| TTCCTAAACAAATTCGGTAA+CGG | 0.579160 | 1_3:+64141078 | Msa0132870:CDS |
| AGGGCTGCCGGCATCTACAG+CGG | 0.585171 | 1_3:+64141632 | Msa0132870:CDS |
| TGGGGCCAAAATGGCAACGA+AGG | 0.591522 | 1_3:+64141003 | Msa0132870:CDS |
| AGATTGCTATGCCACCAGCA+TGG | 0.592121 | 1_3:-64140978 | None:intergenic |
| TTTCCATTATATTGACAAGG+TGG | 0.592596 | 1_3:-64141543 | None:intergenic |
| GTTGCAACTTCCCATGCTGG+TGG | 0.594762 | 1_3:+64140967 | Msa0132870:CDS |
| ACCTGCCAGATTCATTTCAG+GGG | 0.598223 | 1_3:-64141106 | None:intergenic |
| GGACTAGCACTGTTCCAGCT+GGG | 0.601285 | 1_3:+64141598 | Msa0132870:CDS |
| GCTGCCGGCATCTACAGCGG+CGG | 0.604171 | 1_3:+64141635 | Msa0132870:CDS |
| TTAGGAAAGCTATGTTAACA+TGG | 0.604430 | 1_3:-64141062 | None:intergenic |
| ATTTATTCCATGAATTCACA+AGG | 0.612674 | 1_3:-64141575 | None:intergenic |
| ACCCTTTAAGAAAAGCTGCA+AGG | 0.614576 | 1_3:-64141395 | None:intergenic |
| ATGTTTCCATTATATTGACA+AGG | 0.620396 | 1_3:-64141546 | None:intergenic |
| TGCATGAATTTGGAAGTGAT+GGG | 0.620811 | 1_3:-64141137 | None:intergenic |
| TAGGAAAGCTATGTTAACAT+GGG | 0.626283 | 1_3:-64141061 | None:intergenic |
| GGGAAGTTGCAACAAGAGTG+AGG | 0.646970 | 1_3:-64140957 | None:intergenic |
| GGTGGCATAGCAATCTATTG+GGG | 0.654630 | 1_3:+64140985 | Msa0132870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTTTGATTCCTTTATTT+TGG | - | chr1_3:64141191-64141210 | None:intergenic | 20.0% |
| !!! | ATCAAAGTTTTACTTTCAAT+TGG | + | chr1_3:64141201-64141220 | Msa0132870:CDS | 20.0% |
| !!! | GAAACGTTTCAAAATTTTTA+TGG | + | chr1_3:64141268-64141287 | Msa0132870:CDS | 20.0% |
| !!! | ATAGATTTTGATATTGAACT+TGG | + | chr1_3:64141351-64141370 | Msa0132870:CDS | 20.0% |
| !! | ATTAAGAAGTCAAAAAAGTA+TGG | + | chr1_3:64141711-64141730 | Msa0132870:CDS | 20.0% |
| !!! | AAACTTTGATTCCTTTATTT+TGG | - | chr1_3:64141191-64141210 | None:intergenic | 20.0% |
| !!! | ATCAAAGTTTTACTTTCAAT+TGG | + | chr1_3:64141201-64141220 | Msa0132870:CDS | 20.0% |
| !!! | GAAACGTTTCAAAATTTTTA+TGG | + | chr1_3:64141268-64141287 | Msa0132870:CDS | 20.0% |
| !!! | ATAGATTTTGATATTGAACT+TGG | + | chr1_3:64141351-64141370 | Msa0132870:CDS | 20.0% |
| !! | ATTAAGAAGTCAAAAAAGTA+TGG | + | chr1_3:64141711-64141730 | Msa0132870:CDS | 20.0% |
| ! | ATAGCTTTCCTAAACAAATT+CGG | + | chr1_3:64141072-64141091 | Msa0132870:CDS | 25.0% |
| ! | ATCAAAGATTGCCAAAATAA+AGG | + | chr1_3:64141177-64141196 | Msa0132870:CDS | 25.0% |
| !! | AAAGTTTTACTTTCAATTGG+TGG | + | chr1_3:64141204-64141223 | Msa0132870:CDS | 25.0% |
| !! | ATTTTTATGGAACACTTTCT+TGG | + | chr1_3:64141281-64141300 | Msa0132870:CDS | 25.0% |
| !! | TTTTTATGGAACACTTTCTT+GGG | + | chr1_3:64141282-64141301 | Msa0132870:CDS | 25.0% |
| !! | TATGGAAAAAAAGTGTATCT+TGG | + | chr1_3:64141426-64141445 | Msa0132870:CDS | 25.0% |
| !! | TCCAATTCCAGATAAATTTT+TGG | + | chr1_3:64141464-64141483 | Msa0132870:CDS | 25.0% |
| !! | CCAATTCCAGATAAATTTTT+GGG | + | chr1_3:64141465-64141484 | Msa0132870:CDS | 25.0% |
| !!! | AGGTCTTTTTGACTTTATTT+GGG | + | chr1_3:64141503-64141522 | Msa0132870:CDS | 25.0% |
| ! | ATGTTTCCATTATATTGACA+AGG | - | chr1_3:64141549-64141568 | None:intergenic | 25.0% |
| ! | ATTTATTCCATGAATTCACA+AGG | - | chr1_3:64141578-64141597 | None:intergenic | 25.0% |
| ! | TTGTGAATTCATGGAATAAA+TGG | + | chr1_3:64141577-64141596 | Msa0132870:CDS | 25.0% |
| !!! | TTTTTTGACTTCTTAATCAC+AGG | - | chr1_3:64141708-64141727 | None:intergenic | 25.0% |
| ! | ATAGCTTTCCTAAACAAATT+CGG | + | chr1_3:64141072-64141091 | Msa0132870:CDS | 25.0% |
| ! | ATCAAAGATTGCCAAAATAA+AGG | + | chr1_3:64141177-64141196 | Msa0132870:CDS | 25.0% |
| !! | AAAGTTTTACTTTCAATTGG+TGG | + | chr1_3:64141204-64141223 | Msa0132870:CDS | 25.0% |
| !! | ATTTTTATGGAACACTTTCT+TGG | + | chr1_3:64141281-64141300 | Msa0132870:CDS | 25.0% |
| !! | TTTTTATGGAACACTTTCTT+GGG | + | chr1_3:64141282-64141301 | Msa0132870:CDS | 25.0% |
| !! | TATGGAAAAAAAGTGTATCT+TGG | + | chr1_3:64141426-64141445 | Msa0132870:CDS | 25.0% |
| !! | TCCAATTCCAGATAAATTTT+TGG | + | chr1_3:64141464-64141483 | Msa0132870:CDS | 25.0% |
| !! | CCAATTCCAGATAAATTTTT+GGG | + | chr1_3:64141465-64141484 | Msa0132870:CDS | 25.0% |
| !!! | AGGTCTTTTTGACTTTATTT+GGG | + | chr1_3:64141503-64141522 | Msa0132870:CDS | 25.0% |
| ! | ATGTTTCCATTATATTGACA+AGG | - | chr1_3:64141549-64141568 | None:intergenic | 25.0% |
| ! | ATTTATTCCATGAATTCACA+AGG | - | chr1_3:64141578-64141597 | None:intergenic | 25.0% |
| ! | TTGTGAATTCATGGAATAAA+TGG | + | chr1_3:64141577-64141596 | Msa0132870:CDS | 25.0% |
| !!! | TTTTTTGACTTCTTAATCAC+AGG | - | chr1_3:64141708-64141727 | None:intergenic | 25.0% |
| TAGGAAAGCTATGTTAACAT+GGG | - | chr1_3:64141064-64141083 | None:intergenic | 30.0% | |
| TTAGGAAAGCTATGTTAACA+TGG | - | chr1_3:64141065-64141084 | None:intergenic | 30.0% | |
| TTCCTAAACAAATTCGGTAA+CGG | + | chr1_3:64141078-64141097 | Msa0132870:CDS | 30.0% | |
| ! | CTGAATTTTGTGCATGAATT+TGG | - | chr1_3:64141150-64141169 | None:intergenic | 30.0% |
| CTACTCTTTATCTTCAATTG+AGG | + | chr1_3:64141239-64141258 | Msa0132870:CDS | 30.0% | |
| ! | CTTAAAGGGTATAGTAGATA+TGG | + | chr1_3:64141408-64141427 | Msa0132870:CDS | 30.0% |
| ! | CCCAAAAATTTATCTGGAAT+TGG | - | chr1_3:64141468-64141487 | None:intergenic | 30.0% |
| !!! | CAGGTCTTTTTGACTTTATT+TGG | + | chr1_3:64141502-64141521 | Msa0132870:CDS | 30.0% |
| AATCCACCTTGTCAATATAA+TGG | + | chr1_3:64141540-64141559 | Msa0132870:CDS | 30.0% | |
| TTTCCATTATATTGACAAGG+TGG | - | chr1_3:64141546-64141565 | None:intergenic | 30.0% | |
| TAACTAACCTTGTGAATTCA+TGG | + | chr1_3:64141568-64141587 | Msa0132870:CDS | 30.0% | |
| ! | AAGAAGTCAAAAAAGTATGG+AGG | + | chr1_3:64141714-64141733 | Msa0132870:CDS | 30.0% |
| TAGGAAAGCTATGTTAACAT+GGG | - | chr1_3:64141064-64141083 | None:intergenic | 30.0% | |
| TTAGGAAAGCTATGTTAACA+TGG | - | chr1_3:64141065-64141084 | None:intergenic | 30.0% | |
| TTCCTAAACAAATTCGGTAA+CGG | + | chr1_3:64141078-64141097 | Msa0132870:CDS | 30.0% | |
| ! | CTGAATTTTGTGCATGAATT+TGG | - | chr1_3:64141150-64141169 | None:intergenic | 30.0% |
| CTACTCTTTATCTTCAATTG+AGG | + | chr1_3:64141239-64141258 | Msa0132870:CDS | 30.0% | |
| ! | CTTAAAGGGTATAGTAGATA+TGG | + | chr1_3:64141408-64141427 | Msa0132870:CDS | 30.0% |
| ! | CCCAAAAATTTATCTGGAAT+TGG | - | chr1_3:64141468-64141487 | None:intergenic | 30.0% |
| !!! | CAGGTCTTTTTGACTTTATT+TGG | + | chr1_3:64141502-64141521 | Msa0132870:CDS | 30.0% |
| AATCCACCTTGTCAATATAA+TGG | + | chr1_3:64141540-64141559 | Msa0132870:CDS | 30.0% | |
| TTTCCATTATATTGACAAGG+TGG | - | chr1_3:64141546-64141565 | None:intergenic | 30.0% | |
| TAACTAACCTTGTGAATTCA+TGG | + | chr1_3:64141568-64141587 | Msa0132870:CDS | 30.0% | |
| ! | AAGAAGTCAAAAAAGTATGG+AGG | + | chr1_3:64141714-64141733 | Msa0132870:CDS | 30.0% |
| !!! | GTTAACATGGGAGTATTTTC+CGG | - | chr1_3:64141052-64141071 | None:intergenic | 35.0% |
| TGCATGAATTTGGAAGTGAT+GGG | - | chr1_3:64141140-64141159 | None:intergenic | 35.0% | |
| ! | GTTTTACTTTCAATTGGTGG+TGG | + | chr1_3:64141207-64141226 | Msa0132870:CDS | 35.0% |
| AAGTCATCTTCAAGACCATT+AGG | + | chr1_3:64141309-64141328 | Msa0132870:CDS | 35.0% | |
| ! | TCTAAAACAGCATCACCTAA+TGG | - | chr1_3:64141327-64141346 | None:intergenic | 35.0% |
| !!! | TTAGGTGATGCTGTTTTAGA+TGG | + | chr1_3:64141327-64141346 | Msa0132870:CDS | 35.0% |
| ! | ACCTTGCAGCTTTTCTTAAA+GGG | + | chr1_3:64141394-64141413 | Msa0132870:CDS | 35.0% |
| ! | TTATCTGGAATTGGACATTG+AGG | - | chr1_3:64141459-64141478 | None:intergenic | 35.0% |
| !! | CAGCTGGGAAGATATTTTTA+GGG | + | chr1_3:64141613-64141632 | Msa0132870:CDS | 35.0% |
| GGGTATAGCACTTCTATTAT+TGG | + | chr1_3:64141774-64141793 | Msa0132870:CDS | 35.0% | |
| !!! | GTTAACATGGGAGTATTTTC+CGG | - | chr1_3:64141052-64141071 | None:intergenic | 35.0% |
| TGCATGAATTTGGAAGTGAT+GGG | - | chr1_3:64141140-64141159 | None:intergenic | 35.0% | |
| ! | GTTTTACTTTCAATTGGTGG+TGG | + | chr1_3:64141207-64141226 | Msa0132870:CDS | 35.0% |
| AAGTCATCTTCAAGACCATT+AGG | + | chr1_3:64141309-64141328 | Msa0132870:CDS | 35.0% | |
| ! | TCTAAAACAGCATCACCTAA+TGG | - | chr1_3:64141327-64141346 | None:intergenic | 35.0% |
| !!! | TTAGGTGATGCTGTTTTAGA+TGG | + | chr1_3:64141327-64141346 | Msa0132870:CDS | 35.0% |
| ! | ACCTTGCAGCTTTTCTTAAA+GGG | + | chr1_3:64141394-64141413 | Msa0132870:CDS | 35.0% |
| ! | TTATCTGGAATTGGACATTG+AGG | - | chr1_3:64141459-64141478 | None:intergenic | 35.0% |
| !! | CAGCTGGGAAGATATTTTTA+GGG | + | chr1_3:64141613-64141632 | Msa0132870:CDS | 35.0% |
| GGGTATAGCACTTCTATTAT+TGG | + | chr1_3:64141774-64141793 | Msa0132870:CDS | 35.0% | |
| TGGTGGCATAGCAATCTATT+GGG | + | chr1_3:64140984-64141003 | Msa0132870:CDS | 40.0% | |
| ! | GACCGTTACCGAATTTGTTT+AGG | - | chr1_3:64141083-64141102 | None:intergenic | 40.0% |
| TCAAACCCCTGAAATGAATC+TGG | + | chr1_3:64141101-64141120 | Msa0132870:CDS | 40.0% | |
| GTGCATGAATTTGGAAGTGA+TGG | - | chr1_3:64141141-64141160 | None:intergenic | 40.0% | |
| !! | CTTTCAATTGGTGGTGGAAT+TGG | + | chr1_3:64141213-64141232 | Msa0132870:CDS | 40.0% |
| TTATGGAACACTTTCTTGGG+TGG | + | chr1_3:64141285-64141304 | Msa0132870:CDS | 40.0% | |
| AACTTGGTTCCACCGAAAAT+TGG | + | chr1_3:64141367-64141386 | Msa0132870:CDS | 40.0% | |
| !!! | TGCAAGGTGTTGCCAATTTT+CGG | - | chr1_3:64141382-64141401 | None:intergenic | 40.0% |
| ! | CACCTTGCAGCTTTTCTTAA+AGG | + | chr1_3:64141393-64141412 | Msa0132870:CDS | 40.0% |
| ! | ACCCTTTAAGAAAAGCTGCA+AGG | - | chr1_3:64141398-64141417 | None:intergenic | 40.0% |
| GCAGTGCCCAAAAATTTATC+TGG | - | chr1_3:64141474-64141493 | None:intergenic | 40.0% | |
| CCTAAAAATATCTTCCCAGC+TGG | - | chr1_3:64141615-64141634 | None:intergenic | 40.0% | |
| ! | CCAGCTGGGAAGATATTTTT+AGG | + | chr1_3:64141612-64141631 | Msa0132870:CDS | 40.0% |
| !!! | GAAGATATTTTTAGGGCTGC+CGG | + | chr1_3:64141620-64141639 | Msa0132870:CDS | 40.0% |
| ! | AGGTTTCATGATTTGCAGAC+TGG | + | chr1_3:64141753-64141772 | Msa0132870:CDS | 40.0% |
| ! | GGTTTCATGATTTGCAGACT+GGG | + | chr1_3:64141754-64141773 | Msa0132870:CDS | 40.0% |
| TGGTGGCATAGCAATCTATT+GGG | + | chr1_3:64140984-64141003 | Msa0132870:CDS | 40.0% | |
| ! | GACCGTTACCGAATTTGTTT+AGG | - | chr1_3:64141083-64141102 | None:intergenic | 40.0% |
| TCAAACCCCTGAAATGAATC+TGG | + | chr1_3:64141101-64141120 | Msa0132870:CDS | 40.0% | |
| GTGCATGAATTTGGAAGTGA+TGG | - | chr1_3:64141141-64141160 | None:intergenic | 40.0% | |
| !! | CTTTCAATTGGTGGTGGAAT+TGG | + | chr1_3:64141213-64141232 | Msa0132870:CDS | 40.0% |
| TTATGGAACACTTTCTTGGG+TGG | + | chr1_3:64141285-64141304 | Msa0132870:CDS | 40.0% | |
| AACTTGGTTCCACCGAAAAT+TGG | + | chr1_3:64141367-64141386 | Msa0132870:CDS | 40.0% | |
| !!! | TGCAAGGTGTTGCCAATTTT+CGG | - | chr1_3:64141382-64141401 | None:intergenic | 40.0% |
| ! | CACCTTGCAGCTTTTCTTAA+AGG | + | chr1_3:64141393-64141412 | Msa0132870:CDS | 40.0% |
| ! | ACCCTTTAAGAAAAGCTGCA+AGG | - | chr1_3:64141398-64141417 | None:intergenic | 40.0% |
| GCAGTGCCCAAAAATTTATC+TGG | - | chr1_3:64141474-64141493 | None:intergenic | 40.0% | |
| CCTAAAAATATCTTCCCAGC+TGG | - | chr1_3:64141615-64141634 | None:intergenic | 40.0% | |
| ! | CCAGCTGGGAAGATATTTTT+AGG | + | chr1_3:64141612-64141631 | Msa0132870:CDS | 40.0% |
| !!! | GAAGATATTTTTAGGGCTGC+CGG | + | chr1_3:64141620-64141639 | Msa0132870:CDS | 40.0% |
| ! | AGGTTTCATGATTTGCAGAC+TGG | + | chr1_3:64141753-64141772 | Msa0132870:CDS | 40.0% |
| ! | GGTTTCATGATTTGCAGACT+GGG | + | chr1_3:64141754-64141773 | Msa0132870:CDS | 40.0% |
| CTGGTGGCATAGCAATCTAT+TGG | + | chr1_3:64140983-64141002 | Msa0132870:CDS | 45.0% | |
| GGTGGCATAGCAATCTATTG+GGG | + | chr1_3:64140985-64141004 | Msa0132870:CDS | 45.0% | |
| GCAATCTATTGGGGCCAAAA+TGG | + | chr1_3:64140994-64141013 | Msa0132870:CDS | 45.0% | |
| !! | AGGTTCCTTCGTTGCCATTT+TGG | - | chr1_3:64141011-64141030 | None:intergenic | 45.0% |
| ACCTGCCAGATTCATTTCAG+GGG | - | chr1_3:64141109-64141128 | None:intergenic | 45.0% | |
| GACCTGCCAGATTCATTTCA+GGG | - | chr1_3:64141110-64141129 | None:intergenic | 45.0% | |
| TGACCTGCCAGATTCATTTC+AGG | - | chr1_3:64141111-64141130 | None:intergenic | 45.0% | |
| !!! | AAGGTGTTGCCAATTTTCGG+TGG | - | chr1_3:64141379-64141398 | None:intergenic | 45.0% |
| TGCCGGAATAAAACCACTTC+CGG | - | chr1_3:64141661-64141680 | None:intergenic | 45.0% | |
| ! | TCTGAAGTCAACACATCTGC+CGG | - | chr1_3:64141678-64141697 | None:intergenic | 45.0% |
| AGTATGGAGGAGTGATGCTT+TGG | + | chr1_3:64141727-64141746 | Msa0132870:CDS | 45.0% | |
| CTGGTGGCATAGCAATCTAT+TGG | + | chr1_3:64140983-64141002 | Msa0132870:CDS | 45.0% | |
| GGTGGCATAGCAATCTATTG+GGG | + | chr1_3:64140985-64141004 | Msa0132870:CDS | 45.0% | |
| GCAATCTATTGGGGCCAAAA+TGG | + | chr1_3:64140994-64141013 | Msa0132870:CDS | 45.0% | |
| !! | AGGTTCCTTCGTTGCCATTT+TGG | - | chr1_3:64141011-64141030 | None:intergenic | 45.0% |
| ACCTGCCAGATTCATTTCAG+GGG | - | chr1_3:64141109-64141128 | None:intergenic | 45.0% | |
| GACCTGCCAGATTCATTTCA+GGG | - | chr1_3:64141110-64141129 | None:intergenic | 45.0% | |
| TGACCTGCCAGATTCATTTC+AGG | - | chr1_3:64141111-64141130 | None:intergenic | 45.0% | |
| !!! | AAGGTGTTGCCAATTTTCGG+TGG | - | chr1_3:64141379-64141398 | None:intergenic | 45.0% |
| TGCCGGAATAAAACCACTTC+CGG | - | chr1_3:64141661-64141680 | None:intergenic | 45.0% | |
| ! | TCTGAAGTCAACACATCTGC+CGG | - | chr1_3:64141678-64141697 | None:intergenic | 45.0% |
| AGTATGGAGGAGTGATGCTT+TGG | + | chr1_3:64141727-64141746 | Msa0132870:CDS | 45.0% | |
| GGGAAGTTGCAACAAGAGTG+AGG | - | chr1_3:64140960-64140979 | None:intergenic | 50.0% | |
| CTTGTTGCAACTTCCCATGC+TGG | + | chr1_3:64140964-64140983 | Msa0132870:CDS | 50.0% | |
| GATTGCTATGCCACCAGCAT+GGG | - | chr1_3:64140980-64140999 | None:intergenic | 50.0% | |
| AGATTGCTATGCCACCAGCA+TGG | - | chr1_3:64140981-64141000 | None:intergenic | 50.0% | |
| TTATCCGAAGCATGCGCAAC+CGG | + | chr1_3:64141030-64141049 | Msa0132870:CDS | 50.0% | |
| ! | TTTTCCGGTTGCGCATGCTT+CGG | - | chr1_3:64141037-64141056 | None:intergenic | 50.0% |
| ACCCCTGAAATGAATCTGGC+AGG | + | chr1_3:64141105-64141124 | Msa0132870:CDS | 50.0% | |
| ! | TTGGGCACTGCACTTGAAAC+AGG | + | chr1_3:64141483-64141502 | Msa0132870:CDS | 50.0% |
| !!! | GGCCGGAAGTGGTTTTATTC+CGG | + | chr1_3:64141656-64141675 | Msa0132870:CDS | 50.0% |
| GAGGAGTGATGCTTTGGTCA+AGG | + | chr1_3:64141733-64141752 | Msa0132870:CDS | 50.0% | |
| GGGAAGTTGCAACAAGAGTG+AGG | - | chr1_3:64140960-64140979 | None:intergenic | 50.0% | |
| CTTGTTGCAACTTCCCATGC+TGG | + | chr1_3:64140964-64140983 | Msa0132870:CDS | 50.0% | |
| GATTGCTATGCCACCAGCAT+GGG | - | chr1_3:64140980-64140999 | None:intergenic | 50.0% | |
| AGATTGCTATGCCACCAGCA+TGG | - | chr1_3:64140981-64141000 | None:intergenic | 50.0% | |
| TTATCCGAAGCATGCGCAAC+CGG | + | chr1_3:64141030-64141049 | Msa0132870:CDS | 50.0% | |
| ! | TTTTCCGGTTGCGCATGCTT+CGG | - | chr1_3:64141037-64141056 | None:intergenic | 50.0% |
| ACCCCTGAAATGAATCTGGC+AGG | + | chr1_3:64141105-64141124 | Msa0132870:CDS | 50.0% | |
| ! | TTGGGCACTGCACTTGAAAC+AGG | + | chr1_3:64141483-64141502 | Msa0132870:CDS | 50.0% |
| !!! | GGCCGGAAGTGGTTTTATTC+CGG | + | chr1_3:64141656-64141675 | Msa0132870:CDS | 50.0% |
| GAGGAGTGATGCTTTGGTCA+AGG | + | chr1_3:64141733-64141752 | Msa0132870:CDS | 50.0% | |
| GTTGCAACTTCCCATGCTGG+TGG | + | chr1_3:64140967-64140986 | Msa0132870:CDS | 55.0% | |
| TGGGGCCAAAATGGCAACGA+AGG | + | chr1_3:64141003-64141022 | Msa0132870:CDS | 55.0% | |
| GGTTGCGCATGCTTCGGATA+AGG | - | chr1_3:64141031-64141050 | None:intergenic | 55.0% | |
| !! | TGGACTAGCACTGTTCCAGC+TGG | + | chr1_3:64141597-64141616 | Msa0132870:CDS | 55.0% |
| ! | GGACTAGCACTGTTCCAGCT+GGG | + | chr1_3:64141598-64141617 | Msa0132870:CDS | 55.0% |
| GTTGCAACTTCCCATGCTGG+TGG | + | chr1_3:64140967-64140986 | Msa0132870:CDS | 55.0% | |
| TGGGGCCAAAATGGCAACGA+AGG | + | chr1_3:64141003-64141022 | Msa0132870:CDS | 55.0% | |
| GGTTGCGCATGCTTCGGATA+AGG | - | chr1_3:64141031-64141050 | None:intergenic | 55.0% | |
| !! | TGGACTAGCACTGTTCCAGC+TGG | + | chr1_3:64141597-64141616 | Msa0132870:CDS | 55.0% |
| ! | GGACTAGCACTGTTCCAGCT+GGG | + | chr1_3:64141598-64141617 | Msa0132870:CDS | 55.0% |
| AGGGCTGCCGGCATCTACAG+CGG | + | chr1_3:64141632-64141651 | Msa0132870:CDS | 65.0% | |
| AGGGCTGCCGGCATCTACAG+CGG | + | chr1_3:64141632-64141651 | Msa0132870:CDS | 65.0% | |
| GCTGCCGGCATCTACAGCGG+CGG | + | chr1_3:64141635-64141654 | Msa0132870:CDS | 70.0% | |
| TCTACAGCGGCGGCCGGAAG+TGG | + | chr1_3:64141645-64141664 | Msa0132870:CDS | 70.0% | |
| GCTGCCGGCATCTACAGCGG+CGG | + | chr1_3:64141635-64141654 | Msa0132870:CDS | 70.0% | |
| TCTACAGCGGCGGCCGGAAG+TGG | + | chr1_3:64141645-64141664 | Msa0132870:CDS | 70.0% | |
| CCGGCCGCCGCTGTAGATGC+CGG | - | chr1_3:64141642-64141661 | None:intergenic | 75.0% | |
| CCGGCATCTACAGCGGCGGC+CGG | + | chr1_3:64141639-64141658 | Msa0132870:CDS | 75.0% | |
| CCGGCCGCCGCTGTAGATGC+CGG | - | chr1_3:64141642-64141661 | None:intergenic | 75.0% | |
| CCGGCATCTACAGCGGCGGC+CGG | + | chr1_3:64141639-64141658 | Msa0132870:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 64140913 | 64141806 | 64140913 | ID=Msa0132870;Name=Msa0132870 |
| chr1_3 | mRNA | 64140913 | 64141806 | 64140913 | ID=Msa0132870-mRNA-1;Parent=Msa0132870;Name=Msa0132870-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|297 |
| chr1_3 | exon | 64140913 | 64141806 | 64140913 | ID=Msa0132870-mRNA-1:exon:21495;Parent=Msa0132870-mRNA-1 |
| chr1_3 | CDS | 64140913 | 64141806 | 64140913 | ID=Msa0132870-mRNA-1:cds;Parent=Msa0132870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
