AlfalfaGEDB | Msa0060710

M. sativa cultivar zhongmu-4 / Msa0060710

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060710	XP_013466516.1	90.295	237	22	1	1	237	1	236	1.82e-134	388

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060710	A0A072VFH3	90.295	237	22	1	1	237	1	236	8.70e-135	388

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001550	Msa0060710	0.805728	1.160635e-49	-8.615850e-47
Msa0004180	Msa0060710	0.828833	7.216939e-55	-8.615850e-47
Msa0011450	Msa0060710	0.803599	3.228040e-49	-8.615850e-47
Msa0025070	Msa0060710	0.812553	4.000328e-51	-8.615850e-47
Msa0025290	Msa0060710	0.822189	2.706579e-53	-8.615850e-47
Msa0027020	Msa0060710	0.847538	1.085704e-59	-8.615850e-47
Msa0035050	Msa0060710	0.867325	1.487294e-65	-8.615850e-47
Msa0037780	Msa0060710	0.818735	1.678351e-52	-8.615850e-47
Msa0042520	Msa0060710	0.821807	3.318346e-53	-8.615850e-47
Msa0046020	Msa0060710	0.827238	1.747224e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060710	MtrunA17_Chr1g0160431	90.295	237	22	1	1	237	1	236	1.68e-138	388
Msa0060710	MtrunA17_Chr1g0160441	90.909	66	6	0	1	66	1	66	1.39e-35	120
Msa0060710	MtrunA17_Chr8g0372791	40.206	194	97	5	47	237	48	225	1.05e-17	79.0
Msa0060710	MtrunA17_Chr6g0453501	35.567	194	104	5	47	237	80	255	1.14e-14	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0060710	AT2G43630.1	37.895	190	103	3	56	237	80	262	2.46e-31	116

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Find 92 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGACCAAGCGCTTC+AGG	0.322560	1_2:-18491797	Msa0060710:intron
AAACTGCACCTATTTACAAC+TGG	0.479410	1_2:-18491973	None:intergenic
AAAGAGCATCATTAAACTCA+AGG	0.598768	1_2:+18489214	None:intergenic
AAAGATTTCAACCCAAATAA+CGG	0.451388	1_2:+18491455	None:intergenic
AAAGGTGAGTATTTAGACAA+TGG	0.597947	1_2:-18490268	Msa0060710:CDS
AAATGCAATCGCTGCCGGTT+TGG	0.390222	1_2:-18491900	Msa0060710:five_prime_UTR
AAATGCAATGGACAAATTTA+AGG	0.142467	1_2:-18490329	Msa0060710:CDS
AACATGGTGGTATGATCCTG+AGG	0.623546	1_2:-18489339	Msa0060710:CDS
AAGCGCTTGGTCAATGTTTC+TGG	0.125159	1_2:+18491801	None:intergenic
AAGCGTATCATGGTAAAATT+GGG	0.456666	1_2:-18489437	Msa0060710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGATAGGGGAAGAAAAATT+CGG	+	chr1_2:18489173-18489192	None:intergenic	30.0%
AGAATTTCCTAATAAGACCT+GGG	+	chr1_2:18490083-18490102	None:intergenic	30.0%
ACAAAATCAGACAGTTCAAT+TGG	+	chr1_2:18490444-18490463	None:intergenic	30.0%
ATAATAATCAGAATTCCCCA+TGG	-	chr1_2:18490539-18490558	Msa0060710:intron	30.0%
ATTTGTAATAGATTGCCATG+GGG	+	chr1_2:18490557-18490576	None:intergenic	30.0%
CATTTGTAATAGATTGCCAT+GGG	+	chr1_2:18490558-18490577	None:intergenic	30.0%
GCAATCTATTACAAATGCAA+TGG	-	chr1_2:18490561-18490580	Msa0060710:intron	30.0%
TTACGGAAGCAAATTCAAAA+AGG	-	chr1_2:18490616-18490635	Msa0060710:intron	30.0%
AAAGGTGAGTATTTAGACAA+TGG	-	chr1_2:18490634-18490653	Msa0060710:intron	30.0%
GGTATATGTGTAGTATATGT+GGG	-	chr1_2:18490824-18490843	Msa0060710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	18488940	18491984	18488940	ID=Msa0060710;Name=Msa0060710
chr1_2	mRNA	18488940	18491984	18488940	ID=Msa0060710-mRNA-1;Parent=Msa0060710;Name=Msa0060710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=198\|1\|1\|1\|0.66\|0.5\|4\|349\|237
chr1_2	exon	18488940	18489549	18488940	ID=Msa0060710-mRNA-1:exon:7209;Parent=Msa0060710-mRNA-1
chr1_2	exon	18490120	18490374	18490120	ID=Msa0060710-mRNA-1:exon:7208;Parent=Msa0060710-mRNA-1
chr1_2	exon	18491406	18491614	18491406	ID=Msa0060710-mRNA-1:exon:7207;Parent=Msa0060710-mRNA-1
chr1_2	exon	18491798	18491984	18491798	ID=Msa0060710-mRNA-1:exon:7206;Parent=Msa0060710-mRNA-1
chr1_2	five_prime_UTR	18491798	18491984	18491798	ID=Msa0060710-mRNA-1:five_prime_utr;Parent=Msa0060710-mRNA-1
chr1_2	five_prime_UTR	18491604	18491614	18491604	ID=Msa0060710-mRNA-1:five_prime_utr;Parent=Msa0060710-mRNA-1
chr1_2	CDS	18491406	18491603	18491406	ID=Msa0060710-mRNA-1:cds;Parent=Msa0060710-mRNA-1
chr1_2	CDS	18490120	18490374	18490120	ID=Msa0060710-mRNA-1:cds;Parent=Msa0060710-mRNA-1
chr1_2	CDS	18489289	18489549	18489289	ID=Msa0060710-mRNA-1:cds;Parent=Msa0060710-mRNA-1
chr1_2	three_prime_UTR	18488940	18489288	18488940	ID=Msa0060710-mRNA-1:three_prime_utr;Parent=Msa0060710-mRNA-1

Gene Sequence

>Msa0060710

ATGAATTCTGCTCAAGTTACAGCGTTTCAACTTGGAATTTGTGTGAAAAATTCTAAATCATGTGTTCTGCAAATGAGTATTGTAAACTCTTTCCCTCAGATTCGGAATATTAGCATAAGAGATAAACCGTTATTTGGGTTGAAATCTTTGAAGCCTCTTCGTGCTGGTGGAAAAGGAATGTCAGGAAATAGTGATGAGAATTCCCCATGGCAATCTATTACAAATGCAATGGACAAATTTAAGGGACAATCAATAGAAGAAGTATTACGGAAGCAAATTCAAAAAGGTGAGTATTTAGACAATGGTGGAAGTGGAGTAAAGCCACCAGGAGGAGGAGGAGAAGGTGGGGGTGGTGGTGGTGGCGGCAGTCCCAATGGCCCTGGTGGATCTGATGATGAAGAAAGCTATGACACTCGCCAAACAATTTTCGCATCTGGTGCCTTACTCTTTCTGTATATCTATCTCATCATGAGCAAGGAGCTTCTAAGCACAATTTTTGACTTTTTAAGGTTTATAGTTGGCTTAGGTCAGACTAGTCGAATTAAGCGTATCATGGTAAAATTGGGAAAATTGTACCGGAGTACGAAACAGAGGAAAATCACTGATGAGCACTTTTTGGAGAAGGCCATTTTGAATACCCCAACATGGTGGTATGATCCTGAGGATTTTCGTACAGCAGTTAAGAATTACTATGCATCAGATGCGGACGAATAA

Protein sequence

>Msa0060710

MNSAQVTAFQLGICVKNSKSCVLQMSIVNSFPQIRNISIRDKPLFGLKSLKPLRAGGKGMSGNSDENSPWQSITNAMDKFKGQSIEEVLRKQIQKGEYLDNGGSGVKPPGGGGEGGGGGGGGSPNGPGGSDDEESYDTRQTIFASGALLFLYIYLIMSKELLSTIFDFLRFIVGLGQTSRIKRIMVKLGKLYRSTKQRKITDEHFLEKAILNTPTWWYDPEDFRTAVKNYYASDADE*