AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323920 MtrunA17_Chr8g0357051 93.284 268 13 2 1 263 1 268 1.80e-179 494
Msa1323920 MtrunA17_Chr2g0310191 70.000 270 71 6 1 263 1 267 3.88e-126 359
Msa1323920 MtrunA17_Chr8g0348061 57.143 154 63 2 73 224 92 244 5.21e-65 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323920 AT1G79510.2 60.215 279 91 3 1 263 1 275 2.53e-117 337
Msa1323920 AT1G79510.1 60.215 279 91 3 1 263 1 275 2.53e-117 337
Msa1323920 AT1G16320.1 70.000 220 65 1 45 263 54 273 2.81e-117 337
Msa1323920 AT2G46220.1 57.325 157 64 2 70 224 81 236 4.82e-66 206

Find 71 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAACCGGTTTCGGTTT+TGG 0.220818 8_4:-32626807 Msa1323920:CDS
GACCCTTTGAATACATTTAC+TGG 0.225145 8_4:-32627091 Msa1323920:CDS
TGAAAACCATCTTATAATAT+TGG 0.241848 8_4:-32626252 Msa1323920:three_prime_UTR
AGAAGTACAAGTTGATCTTT+TGG 0.270946 8_4:-32627063 Msa1323920:CDS
AGGTACTTCGCGGTATAAAT+TGG 0.272271 8_4:-32626894 Msa1323920:CDS
ACCTTAATTATGATATTTAT+AGG 0.278702 8_4:-32627549 Msa1323920:intron
CAACACTGGTCCAAGAAAAT+TGG 0.287132 8_4:+32626226 None:intergenic
ACCTATAAATATCATAATTA+AGG 0.297853 8_4:+32627548 None:intergenic
CCCCATGAAAATGTTGGATT+TGG 0.313331 8_4:+32626758 None:intergenic
GAATAAAGAGCATTGAGAAA+TGG 0.317766 8_4:+32627741 None:intergenic
AATAAAGAGCATTGAGAAAT+GGG 0.334057 8_4:+32627742 None:intergenic
TGGATTCTAGTTCATGTTCA+TGG 0.337564 8_4:-32626730 Msa1323920:CDS
TGTATAGTATAGATTATAAT+AGG 0.348269 8_4:-32626585 Msa1323920:three_prime_UTR
GTTTGGATGTATACAGAATA+TGG 0.351747 8_4:-32627000 Msa1323920:CDS
AGTCAAGAGTGTATATAGAT+AGG 0.353666 8_4:-32626510 Msa1323920:three_prime_UTR
TGTTTATCTTGAGTAGATAA+TGG 0.361345 8_4:+32627661 None:intergenic
TAGGTTAGATGTAATGAATT+TGG 0.393462 8_4:-32626566 Msa1323920:three_prime_UTR
GAAGATGATGAAACCGGTTT+CGG 0.396965 8_4:-32626813 Msa1323920:CDS
GTTGTTACCACCAGATGGTT+TGG 0.412534 8_4:-32626660 Msa1323920:CDS
GGAACTTGAGGGGTGTGCCT+AGG 0.417152 8_4:-32626946 Msa1323920:CDS
TTTGTTTCGTGAGATTGGTT+TGG 0.421815 8_4:-32627017 Msa1323920:CDS
GAACTTGAGGGGTGTGCCTA+GGG 0.426698 8_4:-32626945 Msa1323920:CDS
TTTGTGTTTGAATCTTGTAT+TGG 0.427442 8_4:+32627786 None:intergenic
ACCAAATCCAAAACCGAAAC+CGG 0.442141 8_4:+32626800 None:intergenic
CAACCTGTGCAGTGAAACTT+TGG 0.444081 8_4:+32627698 None:intergenic
AATGTTGGATTTGGACTAGC+AGG 0.451399 8_4:+32626767 None:intergenic
TGGAAGCCAATATTATAAGA+TGG 0.451997 8_4:+32626246 None:intergenic
TTTCACTGCACAGGTTGCTC+AGG 0.452221 8_4:-32627692 Msa1323920:CDS
GGGGTGTGCCTAGGGTTCCA+TGG 0.454206 8_4:-32626937 Msa1323920:CDS
GTCAAGAGTGTATATAGATA+GGG 0.462156 8_4:-32626509 Msa1323920:three_prime_UTR
ATAAACCATTCAAAATTCAA+TGG 0.462536 8_4:-32627851 Msa1323920:exon
GGGTGTGCCTAGGGTTCCAT+GGG 0.462556 8_4:-32626936 Msa1323920:CDS
CAGAGAATGTGATATTGATC+AGG 0.478427 8_4:-32626970 Msa1323920:CDS
TCCACAGAAGATGATGAAAC+CGG 0.487224 8_4:-32626819 Msa1323920:CDS
TTGAATCTTGTATTGGATTG+AGG 0.489426 8_4:+32627793 None:intergenic
AGTCCAAAGTTTCACTGCAC+AGG 0.490628 8_4:-32627701 Msa1323920:CDS
GAACATGTAGCCAAACCATC+TGG 0.493057 8_4:+32626650 None:intergenic
ATACCAGTAAATGTATTCAA+AGG 0.496720 8_4:+32627088 None:intergenic
TACCAGTAAATGTATTCAAA+GGG 0.501609 8_4:+32627089 None:intergenic
GAAGCTAAAGGTGAATTTCA+AGG 0.517611 8_4:-32626914 Msa1323920:CDS
ATAGATAGGGATGGATGAAG+AGG 0.517888 8_4:-32626496 Msa1323920:three_prime_UTR
GCAGTGAAACTTTGGACTAA+AGG 0.527370 8_4:+32627706 None:intergenic
GTGAATTTCAAGGTACTTCG+CGG 0.529074 8_4:-32626904 Msa1323920:CDS
ATCAATATCACATTCTCTGA+AGG 0.533171 8_4:+32626974 None:intergenic
AATTCACCTTTAGCTTCCCA+TGG 0.534577 8_4:+32626920 None:intergenic
GAGAATGTGTGTGTAATTTG+AGG 0.534640 8_4:+32627910 None:intergenic
TTAGCTTCCCATGGAACCCT+AGG 0.536034 8_4:+32626929 None:intergenic
TATTGATCAGGTGGAACTTG+AGG 0.540071 8_4:-32626958 Msa1323920:CDS
AAAGGACCCCATGAAAATGT+TGG 0.541364 8_4:+32626752 None:intergenic
ATTGATCAGGTGGAACTTGA+GGG 0.551874 8_4:-32626957 Msa1323920:CDS
ACCGGTTTCATCATCTTCTG+TGG 0.561359 8_4:+32626818 None:intergenic
AGGGTTCCATGGGAAGCTAA+AGG 0.578430 8_4:-32626926 Msa1323920:CDS
GAAAGATTGAGATTGCAAAG+AGG 0.578460 8_4:+32627823 None:intergenic
AGGTCTTTAACAAAGATCAA+AGG 0.587544 8_4:+32627568 None:intergenic
AGACAGTTGTTACCACCAGA+TGG 0.589181 8_4:-32626665 Msa1323920:CDS
ATATGCTATACAGATAGAGA+TGG 0.599230 8_4:-32626454 Msa1323920:three_prime_UTR
TAAACAGAATCAGCATCAGA+AGG 0.609028 8_4:-32627644 Msa1323920:CDS
AGAATGTGATATTGATCAGG+TGG 0.610163 8_4:-32626967 Msa1323920:CDS
TCAAGCAGTTAAGCACACAT+TGG 0.624208 8_4:-32626696 Msa1323920:CDS
TCTATACTATACATTGTCAA+CGG 0.630114 8_4:+32626595 None:intergenic
AGAGTGTATATAGATAGGGA+TGG 0.635655 8_4:-32626505 Msa1323920:three_prime_UTR
CTTCGCGGTATAAATTGGAT+CGG 0.643822 8_4:-32626889 Msa1323920:CDS
GAACATGAACTAGAATCCAA+AGG 0.647700 8_4:+32626734 None:intergenic
TGCTGTTAGAACCCTTCGTG+AGG 0.651000 8_4:-32627596 Msa1323920:CDS
CGGTATAAATTGGATCGGAA+CGG 0.651485 8_4:-32626884 Msa1323920:CDS
TTGATCAGGTGGAACTTGAG+GGG 0.654298 8_4:-32626956 Msa1323920:CDS
CAAAGGCATATCCTCACGAA+GGG 0.657035 8_4:+32627585 None:intergenic
ATGTTGGATTTGGACTAGCA+GGG 0.662829 8_4:+32626768 None:intergenic
TCAAAGGCATATCCTCACGA+AGG 0.664210 8_4:+32627584 None:intergenic
CATGTAGCCAAACCATCTGG+TGG 0.698747 8_4:+32626653 None:intergenic
TGTTGTTTAAGCATTATGAG+TGG 0.707726 8_4:+32627934 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTAGATTTTTAATGT+TGG - chr8_4:32626677-32626696 Msa1323920:CDS 10.0%
!!! AAAATTAGATTTTTAATGTT+GGG - chr8_4:32626678-32626697 Msa1323920:CDS 10.0%
!!! AAAAATTAGATTTTTAATGT+TGG - chr8_4:32626677-32626696 Msa1323920:CDS 10.0%
!!! AAAATTAGATTTTTAATGTT+GGG - chr8_4:32626678-32626697 Msa1323920:CDS 10.0%
!! ACCTTAATTATGATATTTAT+AGG - chr8_4:32626570-32626589 Msa1323920:three_prime_UTR 15.0%
!! ACCTATAAATATCATAATTA+AGG + chr8_4:32626574-32626593 None:intergenic 15.0%
!!! TAATTTGAATTGTGTTATTT+AGG - chr8_4:32626650-32626669 Msa1323920:CDS 15.0%
!! GATGATGTAATTAATATATA+TGG - chr8_4:32626716-32626735 Msa1323920:CDS 15.0%
!!! GTGAATATATGTTTTTTAAT+TGG - chr8_4:32626750-32626769 Msa1323920:CDS 15.0%
!!! AAATCCAATTTTTTTATACA+TGG + chr8_4:32626931-32626950 None:intergenic 15.0%
!! TGTATAGTATAGATTATAAT+AGG - chr8_4:32627534-32627553 Msa1323920:intron 15.0%
!! ACCTTAATTATGATATTTAT+AGG - chr8_4:32626570-32626589 Msa1323920:three_prime_UTR 15.0%
!! ACCTATAAATATCATAATTA+AGG + chr8_4:32626574-32626593 None:intergenic 15.0%
!!! TAATTTGAATTGTGTTATTT+AGG - chr8_4:32626650-32626669 Msa1323920:CDS 15.0%
!! GATGATGTAATTAATATATA+TGG - chr8_4:32626716-32626735 Msa1323920:CDS 15.0%
!!! GTGAATATATGTTTTTTAAT+TGG - chr8_4:32626750-32626769 Msa1323920:CDS 15.0%
!!! AAATCCAATTTTTTTATACA+TGG + chr8_4:32626931-32626950 None:intergenic 15.0%
!! TGTATAGTATAGATTATAAT+AGG - chr8_4:32627534-32627553 Msa1323920:intron 15.0%
!! ATAAACCATTCAAAATTCAA+TGG - chr8_4:32626268-32626287 Msa1323920:three_prime_UTR 20.0%
!!! TTGCTTTTGATGTAAATATA+TGG - chr8_4:32626623-32626642 Msa1323920:three_prime_UTR 20.0%
!! AAACATATATTCACATTCAA+AGG + chr8_4:32626744-32626763 None:intergenic 20.0%
!!! ATTTTTTTATACATGGAAAG+TGG + chr8_4:32626924-32626943 None:intergenic 20.0%
!! CTTTCCATGTATAAAAAAAT+TGG - chr8_4:32626924-32626943 Msa1323920:CDS 20.0%
!!! AATAGTTGGAATTTTAATGT+TGG - chr8_4:32626968-32626987 Msa1323920:CDS 20.0%
!!! ATAGTTGGAATTTTAATGTT+GGG - chr8_4:32626969-32626988 Msa1323920:CDS 20.0%
!!! ATGTGTTTTATACATATATG+AGG - chr8_4:32627706-32627725 Msa1323920:CDS 20.0%
!! TGAAAACCATCTTATAATAT+TGG - chr8_4:32627867-32627886 Msa1323920:five_prime_UTR 20.0%
!! ATAAACCATTCAAAATTCAA+TGG - chr8_4:32626268-32626287 Msa1323920:three_prime_UTR 20.0%
!!! TTGCTTTTGATGTAAATATA+TGG - chr8_4:32626623-32626642 Msa1323920:three_prime_UTR 20.0%
!! AAACATATATTCACATTCAA+AGG + chr8_4:32626744-32626763 None:intergenic 20.0%
!!! ATTTTTTTATACATGGAAAG+TGG + chr8_4:32626924-32626943 None:intergenic 20.0%
!! CTTTCCATGTATAAAAAAAT+TGG - chr8_4:32626924-32626943 Msa1323920:CDS 20.0%
!!! AATAGTTGGAATTTTAATGT+TGG - chr8_4:32626968-32626987 Msa1323920:CDS 20.0%
!!! ATAGTTGGAATTTTAATGTT+GGG - chr8_4:32626969-32626988 Msa1323920:CDS 20.0%
!!! ATGTGTTTTATACATATATG+AGG - chr8_4:32627706-32627725 Msa1323920:CDS 20.0%
!! TGAAAACCATCTTATAATAT+TGG - chr8_4:32627867-32627886 Msa1323920:five_prime_UTR 20.0%
!! AAAAGCCATTGAATTTTGAA+TGG + chr8_4:32626276-32626295 None:intergenic 25.0%
! TTTGTGTTTGAATCTTGTAT+TGG + chr8_4:32626336-32626355 None:intergenic 25.0%
!!! AATAAAGAGCATTGAGAAAT+GGG + chr8_4:32626380-32626399 None:intergenic 25.0%
! TGTTTATCTTGAGTAGATAA+TGG + chr8_4:32626461-32626480 None:intergenic 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - chr8_4:32626586-32626605 Msa1323920:three_prime_UTR 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - chr8_4:32626587-32626606 Msa1323920:three_prime_UTR 25.0%
!! TGTTGGGTTTAGTAATTTTA+AGG - chr8_4:32626694-32626713 Msa1323920:CDS 25.0%
! TTGGAATTTAGTAATCTGTA+AGG - chr8_4:32626797-32626816 Msa1323920:CDS 25.0%
! TTCTGTGCAAAAAAAATAGT+TGG - chr8_4:32626954-32626973 Msa1323920:CDS 25.0%
!!! TTGGGTTTGATAATTTTTTC+AGG - chr8_4:32626987-32627006 Msa1323920:CDS 25.0%
!!! TGGGTTTGATAATTTTTTCA+GGG - chr8_4:32626988-32627007 Msa1323920:CDS 25.0%
! TACCAGTAAATGTATTCAAA+GGG + chr8_4:32627033-32627052 None:intergenic 25.0%
! ATACCAGTAAATGTATTCAA+AGG + chr8_4:32627034-32627053 None:intergenic 25.0%
! TCTATACTATACATTGTCAA+CGG + chr8_4:32627527-32627546 None:intergenic 25.0%
! TAGGTTAGATGTAATGAATT+TGG - chr8_4:32627553-32627572 Msa1323920:CDS 25.0%
!! AAAAGCCATTGAATTTTGAA+TGG + chr8_4:32626276-32626295 None:intergenic 25.0%
! TTTGTGTTTGAATCTTGTAT+TGG + chr8_4:32626336-32626355 None:intergenic 25.0%
!!! AATAAAGAGCATTGAGAAAT+GGG + chr8_4:32626380-32626399 None:intergenic 25.0%
! TGTTTATCTTGAGTAGATAA+TGG + chr8_4:32626461-32626480 None:intergenic 25.0%
!! TTATAGGTAATTTTCTCATC+TGG - chr8_4:32626586-32626605 Msa1323920:three_prime_UTR 25.0%
!! TATAGGTAATTTTCTCATCT+GGG - chr8_4:32626587-32626606 Msa1323920:three_prime_UTR 25.0%
!! TGTTGGGTTTAGTAATTTTA+AGG - chr8_4:32626694-32626713 Msa1323920:CDS 25.0%
! TTGGAATTTAGTAATCTGTA+AGG - chr8_4:32626797-32626816 Msa1323920:CDS 25.0%
! TTCTGTGCAAAAAAAATAGT+TGG - chr8_4:32626954-32626973 Msa1323920:CDS 25.0%
!!! TTGGGTTTGATAATTTTTTC+AGG - chr8_4:32626987-32627006 Msa1323920:CDS 25.0%
!!! TGGGTTTGATAATTTTTTCA+GGG - chr8_4:32626988-32627007 Msa1323920:CDS 25.0%
! TACCAGTAAATGTATTCAAA+GGG + chr8_4:32627033-32627052 None:intergenic 25.0%
! ATACCAGTAAATGTATTCAA+AGG + chr8_4:32627034-32627053 None:intergenic 25.0%
! TCTATACTATACATTGTCAA+CGG + chr8_4:32627527-32627546 None:intergenic 25.0%
! TAGGTTAGATGTAATGAATT+TGG - chr8_4:32627553-32627572 Msa1323920:CDS 25.0%
! TGTTGTTTAAGCATTATGAG+TGG + chr8_4:32626188-32626207 None:intergenic 30.0%
TTGAATCTTGTATTGGATTG+AGG + chr8_4:32626329-32626348 None:intergenic 30.0%
!!! GGTTTTGAAGAAGAAAGAAA+GGG + chr8_4:32626359-32626378 None:intergenic 30.0%
!! GAATAAAGAGCATTGAGAAA+TGG + chr8_4:32626381-32626400 None:intergenic 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - chr8_4:32626497-32626516 Msa1323920:three_prime_UTR 30.0%
AGGTCTTTAACAAAGATCAA+AGG + chr8_4:32626554-32626573 None:intergenic 30.0%
!!! AGAAGTACAAGTTGATCTTT+TGG - chr8_4:32627056-32627075 Msa1323920:CDS 30.0%
!!! GAAGTACAAGTTGATCTTTT+GGG - chr8_4:32627057-32627076 Msa1323920:CDS 30.0%
!! AGAATTTTGTTTCGTGAGAT+TGG - chr8_4:32627097-32627116 Msa1323920:CDS 30.0%
GTTTGGATGTATACAGAATA+TGG - chr8_4:32627119-32627138 Msa1323920:intron 30.0%
ATCAATATCACATTCTCTGA+AGG + chr8_4:32627148-32627167 None:intergenic 30.0%
! TCCAAATCCAACATTTTCAT+GGG - chr8_4:32627360-32627379 Msa1323920:intron 30.0%
GAAAAAAACAGTTCACTAAG+TGG + chr8_4:32627505-32627524 None:intergenic 30.0%
! AGTCAAGAGTGTATATAGAT+AGG - chr8_4:32627609-32627628 Msa1323920:CDS 30.0%
! GTCAAGAGTGTATATAGATA+GGG - chr8_4:32627610-32627629 Msa1323920:CDS 30.0%
ATATGCTATACAGATAGAGA+TGG - chr8_4:32627665-32627684 Msa1323920:CDS 30.0%
TGGAAGCCAATATTATAAGA+TGG + chr8_4:32627876-32627895 None:intergenic 30.0%
!!! ATATTGGCTTCCAATTTTCT+TGG - chr8_4:32627883-32627902 Msa1323920:five_prime_UTR 30.0%
!! GACATGTTTTTCTTTTTCAC+TGG - chr8_4:32627937-32627956 Msa1323920:five_prime_UTR 30.0%
! TGTTGTTTAAGCATTATGAG+TGG + chr8_4:32626188-32626207 None:intergenic 30.0%
TTGAATCTTGTATTGGATTG+AGG + chr8_4:32626329-32626348 None:intergenic 30.0%
!!! GGTTTTGAAGAAGAAAGAAA+GGG + chr8_4:32626359-32626378 None:intergenic 30.0%
!! GAATAAAGAGCATTGAGAAA+TGG + chr8_4:32626381-32626400 None:intergenic 30.0%
!! GATGAGTTTTATCTCAATCT+TGG - chr8_4:32626497-32626516 Msa1323920:three_prime_UTR 30.0%
AGGTCTTTAACAAAGATCAA+AGG + chr8_4:32626554-32626573 None:intergenic 30.0%
!!! AGAAGTACAAGTTGATCTTT+TGG - chr8_4:32627056-32627075 Msa1323920:CDS 30.0%
!!! GAAGTACAAGTTGATCTTTT+GGG - chr8_4:32627057-32627076 Msa1323920:CDS 30.0%
!! AGAATTTTGTTTCGTGAGAT+TGG - chr8_4:32627097-32627116 Msa1323920:CDS 30.0%
GTTTGGATGTATACAGAATA+TGG - chr8_4:32627119-32627138 Msa1323920:intron 30.0%
ATCAATATCACATTCTCTGA+AGG + chr8_4:32627148-32627167 None:intergenic 30.0%
! TCCAAATCCAACATTTTCAT+GGG - chr8_4:32627360-32627379 Msa1323920:intron 30.0%
GAAAAAAACAGTTCACTAAG+TGG + chr8_4:32627505-32627524 None:intergenic 30.0%
! AGTCAAGAGTGTATATAGAT+AGG - chr8_4:32627609-32627628 Msa1323920:CDS 30.0%
! GTCAAGAGTGTATATAGATA+GGG - chr8_4:32627610-32627629 Msa1323920:CDS 30.0%
ATATGCTATACAGATAGAGA+TGG - chr8_4:32627665-32627684 Msa1323920:CDS 30.0%
TGGAAGCCAATATTATAAGA+TGG + chr8_4:32627876-32627895 None:intergenic 30.0%
!!! ATATTGGCTTCCAATTTTCT+TGG - chr8_4:32627883-32627902 Msa1323920:five_prime_UTR 30.0%
!! GACATGTTTTTCTTTTTCAC+TGG - chr8_4:32627937-32627956 Msa1323920:five_prime_UTR 30.0%
GAGAATGTGTGTGTAATTTG+AGG + chr8_4:32626212-32626231 None:intergenic 35.0%
GAAAGATTGAGATTGCAAAG+AGG + chr8_4:32626299-32626318 None:intergenic 35.0%
!!! GGGTTTTGAAGAAGAAAGAA+AGG + chr8_4:32626360-32626379 None:intergenic 35.0%
TAAACAGAATCAGCATCAGA+AGG - chr8_4:32626475-32626494 Msa1323920:three_prime_UTR 35.0%
! CAGGGATGATGTAACATTTT+TGG - chr8_4:32627006-32627025 Msa1323920:CDS 35.0%
GACCCTTTGAATACATTTAC+TGG - chr8_4:32627028-32627047 Msa1323920:CDS 35.0%
! TTTGTTTCGTGAGATTGGTT+TGG - chr8_4:32627102-32627121 Msa1323920:CDS 35.0%
CAGAGAATGTGATATTGATC+AGG - chr8_4:32627149-32627168 Msa1323920:intron 35.0%
AGAATGTGATATTGATCAGG+TGG - chr8_4:32627152-32627171 Msa1323920:intron 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - chr8_4:32627205-32627224 Msa1323920:intron 35.0%
! GTCCAAATCCAACATTTTCA+TGG - chr8_4:32627359-32627378 Msa1323920:intron 35.0%
! CCAAATCCAACATTTTCATG+GGG - chr8_4:32627361-32627380 Msa1323920:intron 35.0%
GAACATGAACTAGAATCCAA+AGG + chr8_4:32627388-32627407 None:intergenic 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - chr8_4:32627389-32627408 Msa1323920:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - chr8_4:32627614-32627633 Msa1323920:CDS 35.0%
! TTTTTGTATCTGACCAACAC+TGG + chr8_4:32627910-32627929 None:intergenic 35.0%
GAGAATGTGTGTGTAATTTG+AGG + chr8_4:32626212-32626231 None:intergenic 35.0%
GAAAGATTGAGATTGCAAAG+AGG + chr8_4:32626299-32626318 None:intergenic 35.0%
!!! GGGTTTTGAAGAAGAAAGAA+AGG + chr8_4:32626360-32626379 None:intergenic 35.0%
TAAACAGAATCAGCATCAGA+AGG - chr8_4:32626475-32626494 Msa1323920:three_prime_UTR 35.0%
! CAGGGATGATGTAACATTTT+TGG - chr8_4:32627006-32627025 Msa1323920:CDS 35.0%
GACCCTTTGAATACATTTAC+TGG - chr8_4:32627028-32627047 Msa1323920:CDS 35.0%
! TTTGTTTCGTGAGATTGGTT+TGG - chr8_4:32627102-32627121 Msa1323920:CDS 35.0%
CAGAGAATGTGATATTGATC+AGG - chr8_4:32627149-32627168 Msa1323920:intron 35.0%
AGAATGTGATATTGATCAGG+TGG - chr8_4:32627152-32627171 Msa1323920:intron 35.0%
GAAGCTAAAGGTGAATTTCA+AGG - chr8_4:32627205-32627224 Msa1323920:intron 35.0%
! GTCCAAATCCAACATTTTCA+TGG - chr8_4:32627359-32627378 Msa1323920:intron 35.0%
! CCAAATCCAACATTTTCATG+GGG - chr8_4:32627361-32627380 Msa1323920:intron 35.0%
GAACATGAACTAGAATCCAA+AGG + chr8_4:32627388-32627407 None:intergenic 35.0%
!! TGGATTCTAGTTCATGTTCA+TGG - chr8_4:32627389-32627408 Msa1323920:intron 35.0%
AGAGTGTATATAGATAGGGA+TGG - chr8_4:32627614-32627633 Msa1323920:CDS 35.0%
! TTTTTGTATCTGACCAACAC+TGG + chr8_4:32627910-32627929 None:intergenic 35.0%
GCAGTGAAACTTTGGACTAA+AGG + chr8_4:32626416-32626435 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - chr8_4:32626831-32626850 Msa1323920:CDS 40.0%
AAATGCCGATATAGTTAGGC+CGG - chr8_4:32626835-32626854 Msa1323920:CDS 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - chr8_4:32627065-32627084 Msa1323920:CDS 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - chr8_4:32627073-32627092 Msa1323920:CDS 40.0%
TATTGATCAGGTGGAACTTG+AGG - chr8_4:32627161-32627180 Msa1323920:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - chr8_4:32627162-32627181 Msa1323920:intron 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + chr8_4:32627202-32627221 None:intergenic 40.0%
! GTGAATTTCAAGGTACTTCG+CGG - chr8_4:32627215-32627234 Msa1323920:intron 40.0%
AGGTACTTCGCGGTATAAAT+TGG - chr8_4:32627225-32627244 Msa1323920:intron 40.0%
CTTCGCGGTATAAATTGGAT+CGG - chr8_4:32627230-32627249 Msa1323920:intron 40.0%
CGGTATAAATTGGATCGGAA+CGG - chr8_4:32627235-32627254 Msa1323920:intron 40.0%
TCCACAGAAGATGATGAAAC+CGG - chr8_4:32627300-32627319 Msa1323920:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - chr8_4:32627306-32627325 Msa1323920:intron 40.0%
ACCAAATCCAAAACCGAAAC+CGG + chr8_4:32627322-32627341 None:intergenic 40.0%
!! ATGTTGGATTTGGACTAGCA+GGG + chr8_4:32627354-32627373 None:intergenic 40.0%
!! AATGTTGGATTTGGACTAGC+AGG + chr8_4:32627355-32627374 None:intergenic 40.0%
CCCCATGAAAATGTTGGATT+TGG + chr8_4:32627364-32627383 None:intergenic 40.0%
AAAGGACCCCATGAAAATGT+TGG + chr8_4:32627370-32627389 None:intergenic 40.0%
! AACATTTTCATGGGGTCCTT+TGG - chr8_4:32627369-32627388 Msa1323920:intron 40.0%
TCAAGCAGTTAAGCACACAT+TGG - chr8_4:32627423-32627442 Msa1323920:intron 40.0%
ATAGATAGGGATGGATGAAG+AGG - chr8_4:32627623-32627642 Msa1323920:CDS 40.0%
CAACACTGGTCCAAGAAAAT+TGG + chr8_4:32627896-32627915 None:intergenic 40.0%
! CAATTTTCTTGGACCAGTGT+TGG - chr8_4:32627894-32627913 Msa1323920:five_prime_UTR 40.0%
GCAGTGAAACTTTGGACTAA+AGG + chr8_4:32626416-32626435 None:intergenic 40.0%
TGGCAAATGCCGATATAGTT+AGG - chr8_4:32626831-32626850 Msa1323920:CDS 40.0%
AAATGCCGATATAGTTAGGC+CGG - chr8_4:32626835-32626854 Msa1323920:CDS 40.0%
!! AGTTGATCTTTTGGGCATTG+AGG - chr8_4:32627065-32627084 Msa1323920:CDS 40.0%
!!! TTTTGGGCATTGAGGTTTCA+TGG - chr8_4:32627073-32627092 Msa1323920:CDS 40.0%
TATTGATCAGGTGGAACTTG+AGG - chr8_4:32627161-32627180 Msa1323920:intron 40.0%
ATTGATCAGGTGGAACTTGA+GGG - chr8_4:32627162-32627181 Msa1323920:intron 40.0%
! AATTCACCTTTAGCTTCCCA+TGG + chr8_4:32627202-32627221 None:intergenic 40.0%
! GTGAATTTCAAGGTACTTCG+CGG - chr8_4:32627215-32627234 Msa1323920:intron 40.0%
AGGTACTTCGCGGTATAAAT+TGG - chr8_4:32627225-32627244 Msa1323920:intron 40.0%
CTTCGCGGTATAAATTGGAT+CGG - chr8_4:32627230-32627249 Msa1323920:intron 40.0%
CGGTATAAATTGGATCGGAA+CGG - chr8_4:32627235-32627254 Msa1323920:intron 40.0%
TCCACAGAAGATGATGAAAC+CGG - chr8_4:32627300-32627319 Msa1323920:intron 40.0%
! GAAGATGATGAAACCGGTTT+CGG - chr8_4:32627306-32627325 Msa1323920:intron 40.0%
ACCAAATCCAAAACCGAAAC+CGG + chr8_4:32627322-32627341 None:intergenic 40.0%
!! ATGTTGGATTTGGACTAGCA+GGG + chr8_4:32627354-32627373 None:intergenic 40.0%
!! AATGTTGGATTTGGACTAGC+AGG + chr8_4:32627355-32627374 None:intergenic 40.0%
CCCCATGAAAATGTTGGATT+TGG + chr8_4:32627364-32627383 None:intergenic 40.0%
AAAGGACCCCATGAAAATGT+TGG + chr8_4:32627370-32627389 None:intergenic 40.0%
! AACATTTTCATGGGGTCCTT+TGG - chr8_4:32627369-32627388 Msa1323920:intron 40.0%
TCAAGCAGTTAAGCACACAT+TGG - chr8_4:32627423-32627442 Msa1323920:intron 40.0%
ATAGATAGGGATGGATGAAG+AGG - chr8_4:32627623-32627642 Msa1323920:CDS 40.0%
CAACACTGGTCCAAGAAAAT+TGG + chr8_4:32627896-32627915 None:intergenic 40.0%
! CAATTTTCTTGGACCAGTGT+TGG - chr8_4:32627894-32627913 Msa1323920:five_prime_UTR 40.0%
AGTCCAAAGTTTCACTGCAC+AGG - chr8_4:32626418-32626437 Msa1323920:three_prime_UTR 45.0%
CAACCTGTGCAGTGAAACTT+TGG + chr8_4:32626424-32626443 None:intergenic 45.0%
! CAAAGGCATATCCTCACGAA+GGG + chr8_4:32626537-32626556 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + chr8_4:32626538-32626557 None:intergenic 45.0%
AGTCGTTCGAACCTAGGTTA+AGG + chr8_4:32626864-32626883 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - chr8_4:32627163-32627182 Msa1323920:intron 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + chr8_4:32627304-32627323 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - chr8_4:32627312-32627331 Msa1323920:intron 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - chr8_4:32627318-32627337 Msa1323920:intron 45.0%
AGACAGTTGTTACCACCAGA+TGG - chr8_4:32627454-32627473 Msa1323920:intron 45.0%
GTTGTTACCACCAGATGGTT+TGG - chr8_4:32627459-32627478 Msa1323920:intron 45.0%
GAACATGTAGCCAAACCATC+TGG + chr8_4:32627472-32627491 None:intergenic 45.0%
AGTCCAAAGTTTCACTGCAC+AGG - chr8_4:32626418-32626437 Msa1323920:three_prime_UTR 45.0%
CAACCTGTGCAGTGAAACTT+TGG + chr8_4:32626424-32626443 None:intergenic 45.0%
! CAAAGGCATATCCTCACGAA+GGG + chr8_4:32626537-32626556 None:intergenic 45.0%
! TCAAAGGCATATCCTCACGA+AGG + chr8_4:32626538-32626557 None:intergenic 45.0%
AGTCGTTCGAACCTAGGTTA+AGG + chr8_4:32626864-32626883 None:intergenic 45.0%
TTGATCAGGTGGAACTTGAG+GGG - chr8_4:32627163-32627182 Msa1323920:intron 45.0%
! ACCGGTTTCATCATCTTCTG+TGG + chr8_4:32627304-32627323 None:intergenic 45.0%
!! GATGAAACCGGTTTCGGTTT+TGG - chr8_4:32627312-32627331 Msa1323920:intron 45.0%
!!! ACCGGTTTCGGTTTTGGATT+TGG - chr8_4:32627318-32627337 Msa1323920:intron 45.0%
AGACAGTTGTTACCACCAGA+TGG - chr8_4:32627454-32627473 Msa1323920:intron 45.0%
GTTGTTACCACCAGATGGTT+TGG - chr8_4:32627459-32627478 Msa1323920:intron 45.0%
GAACATGTAGCCAAACCATC+TGG + chr8_4:32627472-32627491 None:intergenic 45.0%
TTTCACTGCACAGGTTGCTC+AGG - chr8_4:32626427-32626446 Msa1323920:three_prime_UTR 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - chr8_4:32626523-32626542 Msa1323920:three_prime_UTR 50.0%
TCTGTAAGGCCTAGCTCAAC+TGG - chr8_4:32626811-32626830 Msa1323920:CDS 50.0%
GGTGTCCGGCCTAACTATAT+CGG + chr8_4:32626843-32626862 None:intergenic 50.0%
! CGAACCTAGGTTAAGGTGTC+CGG + chr8_4:32626857-32626876 None:intergenic 50.0%
ACTACGAGTCGTTCGAACCT+AGG + chr8_4:32626870-32626889 None:intergenic 50.0%
TAGGTTCGAACGACTCGTAG+TGG - chr8_4:32626869-32626888 Msa1323920:CDS 50.0%
TTAGCTTCCCATGGAACCCT+AGG + chr8_4:32627193-32627212 None:intergenic 50.0%
AGGGTTCCATGGGAAGCTAA+AGG - chr8_4:32627193-32627212 Msa1323920:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + chr8_4:32627469-32627488 None:intergenic 50.0%
TTTCACTGCACAGGTTGCTC+AGG - chr8_4:32626427-32626446 Msa1323920:three_prime_UTR 50.0%
TGCTGTTAGAACCCTTCGTG+AGG - chr8_4:32626523-32626542 Msa1323920:three_prime_UTR 50.0%
TCTGTAAGGCCTAGCTCAAC+TGG - chr8_4:32626811-32626830 Msa1323920:CDS 50.0%
GGTGTCCGGCCTAACTATAT+CGG + chr8_4:32626843-32626862 None:intergenic 50.0%
! CGAACCTAGGTTAAGGTGTC+CGG + chr8_4:32626857-32626876 None:intergenic 50.0%
ACTACGAGTCGTTCGAACCT+AGG + chr8_4:32626870-32626889 None:intergenic 50.0%
TAGGTTCGAACGACTCGTAG+TGG - chr8_4:32626869-32626888 Msa1323920:CDS 50.0%
TTAGCTTCCCATGGAACCCT+AGG + chr8_4:32627193-32627212 None:intergenic 50.0%
AGGGTTCCATGGGAAGCTAA+AGG - chr8_4:32627193-32627212 Msa1323920:intron 50.0%
CATGTAGCCAAACCATCTGG+TGG + chr8_4:32627469-32627488 None:intergenic 50.0%
CGGCATTTGCCAGTTGAGCT+AGG + chr8_4:32626823-32626842 None:intergenic 55.0%
TAGGCCGGACACCTTAACCT+AGG - chr8_4:32626850-32626869 Msa1323920:CDS 55.0%
! TCGAACGACTCGTAGTGGAG+TGG - chr8_4:32626874-32626893 Msa1323920:CDS 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - chr8_4:32627174-32627193 Msa1323920:intron 55.0%
CGGCATTTGCCAGTTGAGCT+AGG + chr8_4:32626823-32626842 None:intergenic 55.0%
TAGGCCGGACACCTTAACCT+AGG - chr8_4:32626850-32626869 Msa1323920:CDS 55.0%
! TCGAACGACTCGTAGTGGAG+TGG - chr8_4:32626874-32626893 Msa1323920:CDS 55.0%
! GAACTTGAGGGGTGTGCCTA+GGG - chr8_4:32627174-32627193 Msa1323920:intron 55.0%
! GGAACTTGAGGGGTGTGCCT+AGG - chr8_4:32627173-32627192 Msa1323920:intron 60.0%
GGGTGTGCCTAGGGTTCCAT+GGG - chr8_4:32627183-32627202 Msa1323920:intron 60.0%
! GGAACTTGAGGGGTGTGCCT+AGG - chr8_4:32627173-32627192 Msa1323920:intron 60.0%
GGGTGTGCCTAGGGTTCCAT+GGG - chr8_4:32627183-32627202 Msa1323920:intron 60.0%
GGGGTGTGCCTAGGGTTCCA+TGG - chr8_4:32627182-32627201 Msa1323920:intron 65.0%
GGGGTGTGCCTAGGGTTCCA+TGG - chr8_4:32627182-32627201 Msa1323920:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 32626178 32627963 32626178 ID=Msa1323920;Name=Msa1323920
chr8_4 mRNA 32626178 32627963 32626178 ID=Msa1323920-mRNA-1;Parent=Msa1323920;Name=Msa1323920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=109|1|1|1|1|1|2|468|263
chr8_4 exon 32626178 32627132 32626178 ID=Msa1323920-mRNA-1:exon:10658;Parent=Msa1323920-mRNA-1
chr8_4 exon 32627550 32627963 32627550 ID=Msa1323920-mRNA-1:exon:10657;Parent=Msa1323920-mRNA-1
chr8_4 five_prime_UTR 32627855 32627963 32627855 ID=Msa1323920-mRNA-1:five_prime_utr;Parent=Msa1323920-mRNA-1
chr8_4 CDS 32627550 32627854 32627550 ID=Msa1323920-mRNA-1:cds;Parent=Msa1323920-mRNA-1
chr8_4 CDS 32626646 32627132 32626646 ID=Msa1323920-mRNA-1:cds;Parent=Msa1323920-mRNA-1
chr8_4 three_prime_UTR 32626178 32626645 32626178 ID=Msa1323920-mRNA-1:three_prime_utr;Parent=Msa1323920-mRNA-1
Gene Sequence

>Msa1323920

ATGGCTTTTCCTCTTTGCAATCTCAATCTTTCTCTATTACCTCAATCCAATACAAGATTCAAACACAAACCCTTTCTTTCTTCTTCAAAACCCATTTCTCAATGCTCTTTATTCTTCTCTTCTTCTCCTTTAGTCCAAAGTTTCACTGCACAGGTTGCTCAGGTGAATTCACCATTATCTACTCAAGATAAACAGAATCAGCATCAGAAGGATGAGTTTTATCTCAATCTTGGTGTTGCTGTTAGAACCCTTCGTGAGGATATGCCTTTGATCTTTGTTAAAGACCTTAATTATGATATTTATAGGGATGATGTAACATTTTTGGACCCTTTGAATACATTTACTGGTATTGAGAAGTACAAGTTGATCTTTTGGGCATTGAGGTTTCATGGTAGAATTTTGTTTCGTGAGATTGGTTTGGATGTATACAGAATATGGCAGCCTTCAGAGAATGTGATATTGATCAGGTGGAACTTGAGGGGTGTGCCTAGGGTTCCATGGGAAGCTAAAGGTGAATTTCAAGGTACTTCGCGGTATAAATTGGATCGGAACGGTAAGATTTATGAACACAAAGTTGATAATTTAGCATTCAACTTTCCACAGAAGATGATGAAACCGGTTTCGGTTTTGGATTTGGTTACTGCTTGCCCTGCTAGTCCAAATCCAACATTTTCATGGGGTCCTTTGGATTCTAGTTCATGTTCATGGATAGAATTATATCAAGCAGTTAAGCACACATTGGATGAAGAAAGACAGTTGTTACCACCAGATGGTTTGGCTACATGTTCATAG

Protein sequence

>Msa1323920

MAFPLCNLNLSLLPQSNTRFKHKPFLSSSKPISQCSLFFSSSPLVQSFTAQVAQVNSPLSTQDKQNQHQKDEFYLNLGVAVRTLREDMPLIFVKDLNYDIYRDDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFSWGPLDSSSCSWIELYQAVKHTLDEERQLLPPDGLATCS*