AlfalfaGEDB | Msa1323920

M. sativa cultivar zhongmu-4 / Msa1323920

KEGG: -
GO: -
PFAM: PF10184.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323920	XP_013445321.1	93.284	268	13	2	1	263	1	268	1.96e-175	494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323920	A0A072TPP7	93.284	268	13	2	1	263	1	268	9.34e-176	494

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006820	Msa1323920	0.815910	7.257154e-52	-8.615850e-47
Msa0008850	Msa1323920	0.815694	8.106266e-52	-8.615850e-47
Msa0016830	Msa1323920	0.801928	7.143629e-49	-8.615850e-47
Msa0018870	Msa1323920	0.805264	1.451527e-49	-8.615850e-47
Msa0021710	Msa1323920	0.808890	2.479106e-50	-8.615850e-47
Msa0021980	Msa1323920	0.815213	1.037158e-51	-8.615850e-47
Msa0026120	Msa1323920	0.816596	5.096355e-52	-8.615850e-47
Msa0030030	Msa1323920	0.851884	6.635165e-61	-8.615850e-47
Msa0032040	Msa1323920	0.809579	1.764453e-50	-8.615850e-47
Msa0032450	Msa1323920	0.807309	5.384481e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323920	MtrunA17_Chr8g0357051	93.284	268	13	2	1	263	1	268	1.80e-179	494
Msa1323920	MtrunA17_Chr2g0310191	70.000	270	71	6	1	263	1	267	3.88e-126	359
Msa1323920	MtrunA17_Chr8g0348061	57.143	154	63	2	73	224	92	244	5.21e-65	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1323920	AT1G79510.2	60.215	279	91	3	1	263	1	275	2.53e-117	337
Msa1323920	AT1G79510.1	60.215	279	91	3	1	263	1	275	2.53e-117	337
Msa1323920	AT1G16320.1	70.000	220	65	1	45	263	54	273	2.81e-117	337
Msa1323920	AT2G46220.1	57.325	157	64	2	70	224	81	236	4.82e-66	206

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Find 71 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACCCCATGAAAATGT+TGG	0.541364	8_4:+32626752	None:intergenic
AATAAAGAGCATTGAGAAAT+GGG	0.334057	8_4:+32627742	None:intergenic
AATGTTGGATTTGGACTAGC+AGG	0.451399	8_4:+32626767	None:intergenic
AATTCACCTTTAGCTTCCCA+TGG	0.534577	8_4:+32626920	None:intergenic
ACCAAATCCAAAACCGAAAC+CGG	0.442141	8_4:+32626800	None:intergenic
ACCGGTTTCATCATCTTCTG+TGG	0.561359	8_4:+32626818	None:intergenic
ACCTATAAATATCATAATTA+AGG	0.297853	8_4:+32627548	None:intergenic
ACCTTAATTATGATATTTAT+AGG	0.278702	8_4:-32627549	Msa1323920:intron
AGAAGTACAAGTTGATCTTT+TGG	0.270946	8_4:-32627063	Msa1323920:CDS
AGAATGTGATATTGATCAGG+TGG	0.610163	8_4:-32626967	Msa1323920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATCTTGTATTGGATTG+AGG	+	chr8_4:32626329-32626348	None:intergenic	30.0%
AGGTCTTTAACAAAGATCAA+AGG	+	chr8_4:32626554-32626573	None:intergenic	30.0%
GTTTGGATGTATACAGAATA+TGG	-	chr8_4:32627119-32627138	Msa1323920:intron	30.0%
ATCAATATCACATTCTCTGA+AGG	+	chr8_4:32627148-32627167	None:intergenic	30.0%
GAAAAAAACAGTTCACTAAG+TGG	+	chr8_4:32627505-32627524	None:intergenic	30.0%
ATATGCTATACAGATAGAGA+TGG	-	chr8_4:32627665-32627684	Msa1323920:CDS	30.0%
TGGAAGCCAATATTATAAGA+TGG	+	chr8_4:32627876-32627895	None:intergenic	30.0%
TTGAATCTTGTATTGGATTG+AGG	+	chr8_4:32626329-32626348	None:intergenic	30.0%
AGGTCTTTAACAAAGATCAA+AGG	+	chr8_4:32626554-32626573	None:intergenic	30.0%
GTTTGGATGTATACAGAATA+TGG	-	chr8_4:32627119-32627138	Msa1323920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	32626178	32627963	32626178	ID=Msa1323920;Name=Msa1323920
chr8_4	mRNA	32626178	32627963	32626178	ID=Msa1323920-mRNA-1;Parent=Msa1323920;Name=Msa1323920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=109\|1\|1\|1\|1\|1\|2\|468\|263
chr8_4	exon	32626178	32627132	32626178	ID=Msa1323920-mRNA-1:exon:10658;Parent=Msa1323920-mRNA-1
chr8_4	exon	32627550	32627963	32627550	ID=Msa1323920-mRNA-1:exon:10657;Parent=Msa1323920-mRNA-1
chr8_4	five_prime_UTR	32627855	32627963	32627855	ID=Msa1323920-mRNA-1:five_prime_utr;Parent=Msa1323920-mRNA-1
chr8_4	CDS	32627550	32627854	32627550	ID=Msa1323920-mRNA-1:cds;Parent=Msa1323920-mRNA-1
chr8_4	CDS	32626646	32627132	32626646	ID=Msa1323920-mRNA-1:cds;Parent=Msa1323920-mRNA-1
chr8_4	three_prime_UTR	32626178	32626645	32626178	ID=Msa1323920-mRNA-1:three_prime_utr;Parent=Msa1323920-mRNA-1

Gene Sequence

>Msa1323920

ATGGCTTTTCCTCTTTGCAATCTCAATCTTTCTCTATTACCTCAATCCAATACAAGATTCAAACACAAACCCTTTCTTTCTTCTTCAAAACCCATTTCTCAATGCTCTTTATTCTTCTCTTCTTCTCCTTTAGTCCAAAGTTTCACTGCACAGGTTGCTCAGGTGAATTCACCATTATCTACTCAAGATAAACAGAATCAGCATCAGAAGGATGAGTTTTATCTCAATCTTGGTGTTGCTGTTAGAACCCTTCGTGAGGATATGCCTTTGATCTTTGTTAAAGACCTTAATTATGATATTTATAGGGATGATGTAACATTTTTGGACCCTTTGAATACATTTACTGGTATTGAGAAGTACAAGTTGATCTTTTGGGCATTGAGGTTTCATGGTAGAATTTTGTTTCGTGAGATTGGTTTGGATGTATACAGAATATGGCAGCCTTCAGAGAATGTGATATTGATCAGGTGGAACTTGAGGGGTGTGCCTAGGGTTCCATGGGAAGCTAAAGGTGAATTTCAAGGTACTTCGCGGTATAAATTGGATCGGAACGGTAAGATTTATGAACACAAAGTTGATAATTTAGCATTCAACTTTCCACAGAAGATGATGAAACCGGTTTCGGTTTTGGATTTGGTTACTGCTTGCCCTGCTAGTCCAAATCCAACATTTTCATGGGGTCCTTTGGATTCTAGTTCATGTTCATGGATAGAATTATATCAAGCAGTTAAGCACACATTGGATGAAGAAAGACAGTTGTTACCACCAGATGGTTTGGCTACATGTTCATAG

Protein sequence

>Msa1323920

MAFPLCNLNLSLLPQSNTRFKHKPFLSSSKPISQCSLFFSSSPLVQSFTAQVAQVNSPLSTQDKQNQHQKDEFYLNLGVAVRTLREDMPLIFVKDLNYDIYRDDVTFLDPLNTFTGIEKYKLIFWALRFHGRILFREIGLDVYRIWQPSENVILIRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQKMMKPVSVLDLVTACPASPNPTFSWGPLDSSSCSWIELYQAVKHTLDEERQLLPPDGLATCS*