Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529010 | XP_003590794.1 | 89.062 | 256 | 15 | 1 | 1 | 243 | 1 | 256 | 3.14e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529010 | sp|Q682V0|XRCC4_ARATH | 54.656 | 247 | 93 | 4 | 4 | 236 | 22 | 263 | 8.38e-87 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529010 | G7I3Z1 | 89.062 | 256 | 15 | 1 | 1 | 243 | 1 | 256 | 1.50e-162 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa0529010 | 0.835556 | 1.566901e-56 | -8.615850e-47 |
| Msa0079070 | Msa0529010 | 0.807812 | 4.209312e-50 | -8.615850e-47 |
| Msa0138020 | Msa0529010 | 0.825252 | 5.186286e-54 | -8.615850e-47 |
| Msa0197660 | Msa0529010 | 0.804345 | 2.259095e-49 | -8.615850e-47 |
| Msa0220580 | Msa0529010 | 0.811045 | 8.517590e-51 | -8.615850e-47 |
| Msa0420960 | Msa0529010 | 0.802134 | 6.479563e-49 | -8.615850e-47 |
| Msa0428080 | Msa0529010 | 0.807435 | 5.061048e-50 | -8.615850e-47 |
| Msa0239800 | Msa0529010 | 0.802891 | 4.523736e-49 | -8.615850e-47 |
| Msa0278580 | Msa0529010 | 0.800936 | 1.140430e-48 | -8.615850e-47 |
| Msa0287410 | Msa0529010 | 0.816154 | 6.401477e-52 | -8.615850e-47 |
| Msa0309770 | Msa0529010 | 0.808838 | 2.543539e-50 | -8.615850e-47 |
| Msa0317510 | Msa0529010 | 0.803156 | 3.986805e-49 | -8.615850e-47 |
| Msa0363790 | Msa0529010 | 0.810635 | 1.045313e-50 | -8.615850e-47 |
| Msa0512750 | Msa0529010 | 0.831932 | 1.260822e-55 | -8.615850e-47 |
| Msa0518380 | Msa0529010 | 0.838882 | 2.208088e-57 | -8.615850e-47 |
| Msa0529010 | Msa0577500 | 0.816401 | 5.637173e-52 | -8.615850e-47 |
| Msa0529010 | Msa0587030 | 0.818524 | 1.874186e-52 | -8.615850e-47 |
| Msa0529010 | Msa0610430 | 0.804578 | 2.019796e-49 | -8.615850e-47 |
| Msa0529010 | Msa0626850 | 0.807700 | 4.446836e-50 | -8.615850e-47 |
| Msa0529010 | Msa0673460 | 0.833592 | 4.880146e-56 | -8.615850e-47 |
| Msa0529010 | Msa0693380 | 0.805832 | 1.103328e-49 | -8.615850e-47 |
| Msa0529010 | Msa0740510 | 0.807254 | 5.529879e-50 | -8.615850e-47 |
| Msa0529010 | Msa0820770 | 0.801630 | 8.225482e-49 | -8.615850e-47 |
| Msa0529010 | Msa0831110 | 0.804718 | 1.888526e-49 | -8.615850e-47 |
| Msa0529010 | Msa0905730 | 0.806564 | 7.737249e-50 | -8.615850e-47 |
| Msa0529010 | Msa0969520 | 0.813421 | 2.582181e-51 | -8.615850e-47 |
| Msa0529010 | Msa0969810 | 0.800037 | 1.738925e-48 | -8.615850e-47 |
| Msa0529010 | Msa0973600 | 0.800070 | 1.712822e-48 | -8.615850e-47 |
| Msa0529010 | Msa1046020 | 0.814673 | 1.366672e-51 | -8.615850e-47 |
| Msa0529010 | Msa1046060 | 0.813032 | 3.142741e-51 | -8.615850e-47 |
| Msa0529010 | Msa1082500 | 0.819742 | 9.897502e-53 | -8.615850e-47 |
| Msa0529010 | Msa1091100 | 0.800021 | 1.752001e-48 | -8.615850e-47 |
| Msa0529010 | Msa1100050 | 0.802605 | 5.182059e-49 | -8.615850e-47 |
| Msa0529010 | Msa1129550 | 0.837576 | 4.790676e-57 | -8.615850e-47 |
| Msa0529010 | Msa1129730 | 0.838624 | 2.575231e-57 | -8.615850e-47 |
| Msa0529010 | Msa1131220 | 0.801932 | 7.131449e-49 | -8.615850e-47 |
| Msa0529010 | Msa1204530 | 0.815592 | 8.542865e-52 | -8.615850e-47 |
| Msa0529010 | Msa1204630 | 0.800196 | 1.614021e-48 | -8.615850e-47 |
| Msa0529010 | Msa1225130 | 0.803064 | 4.166260e-49 | -8.615850e-47 |
| Msa0529010 | Msa1250530 | 0.801510 | 8.703896e-49 | -8.615850e-47 |
| Msa0529010 | Msa1306840 | 0.815150 | 1.071412e-51 | -8.615850e-47 |
| Msa0529010 | Msa1331000 | 0.821896 | 3.164418e-53 | -8.615850e-47 |
| Msa0529010 | Msa1331320 | 0.814533 | 1.467694e-51 | -8.615850e-47 |
| Msa0529010 | Msa1394380 | 0.801342 | 9.420032e-49 | -8.615850e-47 |
| Msa0529010 | Msa1424750 | 0.829118 | 6.154091e-55 | -8.615850e-47 |
| Msa0529010 | Msa1427230 | 0.803133 | 4.030876e-49 | -8.615850e-47 |
| Msa0529010 | Msa1435270 | 0.803561 | 3.287750e-49 | -8.615850e-47 |
| Msa0529010 | Msa1436480 | 0.805063 | 1.599353e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529010 | MtrunA17_Chr1g0187151 | 89.062 | 256 | 15 | 1 | 1 | 243 | 1 | 256 | 2.89e-166 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529010 | AT3G23100.1 | 54.656 | 247 | 93 | 4 | 4 | 236 | 22 | 263 | 8.52e-88 | 261 |
| Msa0529010 | AT3G23100.2 | 54.656 | 247 | 93 | 4 | 4 | 236 | 22 | 263 | 8.52e-88 | 261 |
| Msa0529010 | AT1G61410.1 | 53.153 | 111 | 47 | 2 | 116 | 225 | 1 | 107 | 2.16e-28 | 104 |
Find 49 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGTCTGAGCGGTATT+TGG | 0.234417 | 4_1:-2008486 | Msa0529010:CDS |
| GAATTGTCTGAGCGGTATTT+GGG | 0.316473 | 4_1:-2008485 | Msa0529010:CDS |
| GAAAACTACTGCAGAAATAT+TGG | 0.339315 | 4_1:-2007389 | Msa0529010:CDS |
| TTCAAATTCCACCCTTTCAT+TGG | 0.363589 | 4_1:+2005156 | None:intergenic |
| TGTACAAAATTCACTTAAGT+TGG | 0.371961 | 4_1:-2004489 | Msa0529010:three_prime_UTR |
| TACGAATATTGATTCTTCTT+CGG | 0.389512 | 4_1:+2008724 | None:intergenic |
| TCACTGACGGTTTCACCGCT+TGG | 0.424658 | 4_1:-2008664 | Msa0529010:CDS |
| CAATATTCGTAAAGGGTACA+TGG | 0.440563 | 4_1:-2008712 | Msa0529010:CDS |
| GAAGAATCAATATTCGTAAA+GGG | 0.446201 | 4_1:-2008719 | Msa0529010:CDS |
| TGCTGCTCAGTGGGACCAGC+CGG | 0.460985 | 4_1:-2008522 | Msa0529010:CDS |
| TATTTGGGGTTTCAACAACC+TGG | 0.463564 | 4_1:-2008470 | Msa0529010:CDS |
| TTCTCATGGATGCAAACATA+AGG | 0.465523 | 4_1:-2007363 | Msa0529010:CDS |
| AGAAGAATCAATATTCGTAA+AGG | 0.465776 | 4_1:-2008720 | Msa0529010:CDS |
| CATGTGAGTCTAGTTCTCCT+TGG | 0.474048 | 4_1:+2004590 | None:intergenic |
| ACTAGTTCTTCGAAGGATGT+TGG | 0.485278 | 4_1:-2004632 | Msa0529010:CDS |
| AGAAATATTGGACTTTCTCA+TGG | 0.496713 | 4_1:-2007377 | Msa0529010:CDS |
| GAAGCAGCGTGCTGCTCAGT+GGG | 0.503408 | 4_1:-2008531 | Msa0529010:CDS |
| GATCGATGGAAGGGAAGAAA+AGG | 0.505636 | 4_1:-2008772 | Msa0529010:exon |
| AAATTACTGTAACAATTTGA+AGG | 0.515198 | 4_1:+2008820 | None:intergenic |
| GAATGACACTGCATTGGAGA+TGG | 0.516889 | 4_1:-2007438 | Msa0529010:CDS |
| GTGAGAGAATAGCCAATGAA+AGG | 0.523831 | 4_1:-2005168 | Msa0529010:CDS |
| AGGGAGGAATGACACTGCAT+TGG | 0.540751 | 4_1:-2007444 | Msa0529010:CDS |
| CCACGTAATCTTCCACCGGC+TGG | 0.550803 | 4_1:+2008507 | None:intergenic |
| TGAGAGAATAGCCAATGAAA+GGG | 0.557370 | 4_1:-2005167 | Msa0529010:CDS |
| AGCGGTGAAACCGTCAGTGA+TGG | 0.557450 | 4_1:+2008667 | None:intergenic |
| GTTGTCGTGGACGTTTGAGA+AGG | 0.561969 | 4_1:-2007464 | Msa0529010:CDS |
| GTGTATTACTAGTTCTTCGA+AGG | 0.563762 | 4_1:-2004639 | Msa0529010:CDS |
| ATTAGAAGCTGAGAAGTGCT+TGG | 0.565059 | 4_1:-2005197 | Msa0529010:CDS |
| TTCAACCTCTCCATCACTGA+CGG | 0.573361 | 4_1:-2008677 | Msa0529010:CDS |
| ATTTGGGGTTTCAACAACCT+GGG | 0.573554 | 4_1:-2008469 | Msa0529010:CDS |
| CAGCTGTCAAAACAAGATAA+CGG | 0.575664 | 4_1:-2004755 | Msa0529010:CDS |
| TTGTCGTGGACGTTTGAGAA+GGG | 0.583754 | 4_1:-2007463 | Msa0529010:CDS |
| TGTGAATGTTGCAGTTGTCG+TGG | 0.589936 | 4_1:-2007477 | Msa0529010:intron |
| CAAGTAAGCGTTCTCGTCCA+AGG | 0.592810 | 4_1:-2004607 | Msa0529010:CDS |
| TGCTCAGTGGGACCAGCCGG+TGG | 0.593157 | 4_1:-2008519 | Msa0529010:CDS |
| CGGCAACAAATCTCTTCAAG+AGG | 0.596675 | 4_1:-2004735 | Msa0529010:CDS |
| TTGTACAAATGTGAAATCCA+TGG | 0.600774 | 4_1:+2004505 | None:intergenic |
| TGAATCTCAAATCTATACAA+AGG | 0.608331 | 4_1:-2005137 | Msa0529010:intron |
| TGAAGCAGCGTGCTGCTCAG+TGG | 0.619678 | 4_1:-2008532 | Msa0529010:CDS |
| TCGTGGACGTTTGAGAAGGG+AGG | 0.620819 | 4_1:-2007460 | Msa0529010:CDS |
| CCAGCCGGTGGAAGATTACG+TGG | 0.621603 | 4_1:-2008507 | Msa0529010:CDS |
| TTCACCGCTTGGAACTGCAA+CGG | 0.635648 | 4_1:-2008653 | Msa0529010:intron |
| AATTCCACGTAATCTTCCAC+CGG | 0.638166 | 4_1:+2008503 | None:intergenic |
| TGAAACCGTCAGTGATGGAG+AGG | 0.639289 | 4_1:+2008672 | None:intergenic |
| GCAAATGCATAAACAGACCC+AGG | 0.643154 | 4_1:+2008452 | None:intergenic |
| AATTGTCTGAGCGGTATTTG+GGG | 0.650141 | 4_1:-2008484 | Msa0529010:CDS |
| GAGAATAGCCAATGAAAGGG+TGG | 0.673255 | 4_1:-2005164 | Msa0529010:CDS |
| AGTACCGTTGCAGTTCCAAG+CGG | 0.722808 | 4_1:+2008649 | None:intergenic |
| ATTACGTGGAATTGTCTGAG+CGG | 0.752537 | 4_1:-2008493 | Msa0529010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATAATTTTTTTTTGTTT+TGG | + | chr4_1:2005379-2005398 | None:intergenic | 10.0% |
| !! | TCAAAAAAAAAAAAATTTGT+TGG | + | chr4_1:2007442-2007461 | None:intergenic | 10.0% |
| !! | ATCAAAAAAAAAAAAATTGT+TGG | + | chr4_1:2007557-2007576 | None:intergenic | 10.0% |
| !!! | TAGTGTTAATTTTTTGAAAT+AGG | - | chr4_1:2005446-2005465 | Msa0529010:intron | 15.0% |
| !!! | ATCAATTATTTTATGTGAAA+TGG | - | chr4_1:2006179-2006198 | Msa0529010:intron | 15.0% |
| !!! | ATTTAAAATTACTACCTAAA+TGG | + | chr4_1:2006461-2006480 | None:intergenic | 15.0% |
| !!! | TAGTAATTTTAAATTACAGT+TGG | - | chr4_1:2006467-2006486 | Msa0529010:intron | 15.0% |
| !!! | ATTACCTTTAAATTTGAAAT+TGG | - | chr4_1:2006570-2006589 | Msa0529010:intron | 15.0% |
| !! | AATTCCAATTTCAAATTTAA+AGG | + | chr4_1:2006577-2006596 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAATTTGTTGGAT+TGG | + | chr4_1:2007437-2007456 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATTGTTGGAT+TGG | + | chr4_1:2007552-2007571 | None:intergenic | 15.0% |
| !!! | ATTTTTACAATAGATGATTA+AGG | + | chr4_1:2007603-2007622 | None:intergenic | 15.0% |
| !! | ATGTTCAAAACTAAATAAAA+GGG | + | chr4_1:2007754-2007773 | None:intergenic | 15.0% |
| !! | TCTTCTATTTATGTATAAAA+GGG | + | chr4_1:2007844-2007863 | None:intergenic | 15.0% |
| !! | ATAAAAGTTAGTTAGTTAAT+TGG | + | chr4_1:2008006-2008025 | None:intergenic | 15.0% |
| !! | AAATTACTGTAACAATTTGA+AGG | + | chr4_1:2004498-2004517 | None:intergenic | 20.0% |
| !!! | AAGTTTTGATTTTGATTTGT+GGG | - | chr4_1:2004725-2004744 | Msa0529010:CDS | 20.0% |
| !!! | GTTGAATTTTTTTTTAGCAT+CGG | - | chr4_1:2004751-2004770 | Msa0529010:CDS | 20.0% |
| !! | CTTATCTCAAATTATTATTC+AGG | + | chr4_1:2004972-2004991 | None:intergenic | 20.0% |
| !! | ATAATATGAAGTGAAATAGA+AGG | - | chr4_1:2005419-2005438 | Msa0529010:intron | 20.0% |
| !! | AAACAGAATGATGTAAAAAA+TGG | + | chr4_1:2005757-2005776 | None:intergenic | 20.0% |
| !! | AATAGGAATGTAATGTTTAA+CGG | - | chr4_1:2006127-2006146 | Msa0529010:intron | 20.0% |
| !! | GAACACAATATGATTAAATA+AGG | + | chr4_1:2006430-2006449 | None:intergenic | 20.0% |
| !! | AAGGTAATTAATAATGTAAG+AGG | + | chr4_1:2006558-2006577 | None:intergenic | 20.0% |
| !!! | TATCAAAAAGATACATTTTG+TGG | + | chr4_1:2006872-2006891 | None:intergenic | 20.0% |
| !! | TCTTAAACTTGAGTAAATAT+GGG | - | chr4_1:2006937-2006956 | Msa0529010:intron | 20.0% |
| !! | AGTTTCAATATCCATAAAAT+AGG | + | chr4_1:2007023-2007042 | None:intergenic | 20.0% |
| !! | AAACTAGAAAATTAAGAAAC+AGG | + | chr4_1:2007088-2007107 | None:intergenic | 20.0% |
| !! | GATGTTCAAAACTAAATAAA+AGG | + | chr4_1:2007755-2007774 | None:intergenic | 20.0% |
| !! | AAAATGCATATAATCAAACA+TGG | + | chr4_1:2007786-2007805 | None:intergenic | 20.0% |
| !! | CTCTTCTATTTATGTATAAA+AGG | + | chr4_1:2007845-2007864 | None:intergenic | 20.0% |
| !! | TATTACAAAACTTTCGAATT+TGG | - | chr4_1:2008436-2008455 | Msa0529010:intron | 20.0% |
| ! | CGATCAAAATTCAAAAATCT+GGG | + | chr4_1:2004528-2004547 | None:intergenic | 25.0% |
| ! | TCGATCAAAATTCAAAAATC+TGG | + | chr4_1:2004529-2004548 | None:intergenic | 25.0% |
| !!! | GATTTTTGAATTTTGATCGA+TGG | - | chr4_1:2004529-2004548 | Msa0529010:three_prime_UTR | 25.0% |
| !!! | TACGAATATTGATTCTTCTT+CGG | + | chr4_1:2004594-2004613 | None:intergenic | 25.0% |
| ! | AGAAGAATCAATATTCGTAA+AGG | - | chr4_1:2004595-2004614 | Msa0529010:CDS | 25.0% |
| ! | GAAGAATCAATATTCGTAAA+GGG | - | chr4_1:2004596-2004615 | Msa0529010:CDS | 25.0% |
| ! | TGAAGATAGATTAGTGAAAA+GGG | + | chr4_1:2004706-2004725 | None:intergenic | 25.0% |
| ! | TTGAAGATAGATTAGTGAAA+AGG | + | chr4_1:2004707-2004726 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGATTTTGATTTG+TGG | - | chr4_1:2004724-2004743 | Msa0529010:CDS | 25.0% |
| !!! | AGTTTTGATTTTGATTTGTG+GGG | - | chr4_1:2004726-2004745 | Msa0529010:CDS | 25.0% |
| ! | TACGAAAAATAACAAACAGT+TGG | + | chr4_1:2004921-2004940 | None:intergenic | 25.0% |
| ! | TGATCCAGATATCTATTTAA+GGG | + | chr4_1:2005355-2005374 | None:intergenic | 25.0% |
| ! | TTGATCCAGATATCTATTTA+AGG | + | chr4_1:2005356-2005375 | None:intergenic | 25.0% |
| ! | GAAAAACAAATACATTGGTA+AGG | + | chr4_1:2005656-2005675 | None:intergenic | 25.0% |
| ! | TCGAAGAAAAACAAATACAT+TGG | + | chr4_1:2005661-2005680 | None:intergenic | 25.0% |
| !! | GTTTCTCGATTTGTTTATTA+TGG | - | chr4_1:2006061-2006080 | Msa0529010:intron | 25.0% |
| ! | GTTTATTATGGTTATTGTCT+TGG | - | chr4_1:2006073-2006092 | Msa0529010:intron | 25.0% |
| ! | AATGTTTAACGGTGTAAAAT+TGG | - | chr4_1:2006138-2006157 | Msa0529010:intron | 25.0% |
| !! | TATGTGAAATGGTTTTTGAT+AGG | - | chr4_1:2006190-2006209 | Msa0529010:intron | 25.0% |
| ! | GAAATGAAACAATGATATAC+AGG | + | chr4_1:2006230-2006249 | None:intergenic | 25.0% |
| ! | AATTGAATACAACAACAAAC+TGG | + | chr4_1:2006252-2006271 | None:intergenic | 25.0% |
| ! | AAAAGTAGCTAGAACTAAAT+TGG | - | chr4_1:2006392-2006411 | Msa0529010:intron | 25.0% |
| ! | AAAGTAGCTAGAACTAAATT+GGG | - | chr4_1:2006393-2006412 | Msa0529010:intron | 25.0% |
| ! | TCATGAAAATGTCAAATTTC+AGG | + | chr4_1:2006609-2006628 | None:intergenic | 25.0% |
| ! | TGAAATATACTATACTATCG+AGG | - | chr4_1:2006626-2006645 | Msa0529010:intron | 25.0% |
| !! | AATAAGTTGGCTGTTATTTA+TGG | - | chr4_1:2006740-2006759 | Msa0529010:intron | 25.0% |
| ! | AGTGAGATGAAATTCAAAAA+AGG | + | chr4_1:2006906-2006925 | None:intergenic | 25.0% |
| ! | GTCTTAAACTTGAGTAAATA+TGG | - | chr4_1:2006936-2006955 | Msa0529010:intron | 25.0% |
| ! | CTTAAACTTGAGTAAATATG+GGG | - | chr4_1:2006938-2006957 | Msa0529010:intron | 25.0% |
| !! | GAATCAATATGCCTATTTTA+TGG | - | chr4_1:2007009-2007028 | Msa0529010:intron | 25.0% |
| ! | TGAAACTTAAAGTATGTCAA+TGG | - | chr4_1:2007036-2007055 | Msa0529010:intron | 25.0% |
| ! | GTTAATATCAACTACTGTAA+TGG | - | chr4_1:2007127-2007146 | Msa0529010:intron | 25.0% |
| ! | TTCAAAACTAAATAAAAGGG+AGG | + | chr4_1:2007751-2007770 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGAACATCATAGT+TGG | - | chr4_1:2007760-2007779 | Msa0529010:intron | 25.0% |
| !!! | GTATAAAAGGGTTATTTCTT+TGG | + | chr4_1:2007832-2007851 | None:intergenic | 25.0% |
| !! | AATTGGAGGTTGTTATTATA+GGG | + | chr4_1:2007989-2008008 | None:intergenic | 25.0% |
| !! | TAATTGGAGGTTGTTATTAT+AGG | + | chr4_1:2007990-2008009 | None:intergenic | 25.0% |
| ! | AAAGTTAGTTAGTTAATTGG+AGG | + | chr4_1:2008003-2008022 | None:intergenic | 25.0% |
| ! | TGAATCTCAAATCTATACAA+AGG | - | chr4_1:2008178-2008197 | Msa0529010:intron | 25.0% |
| !! | ATACAGGTCAAAATTTTCAA+TGG | + | chr4_1:2008245-2008264 | None:intergenic | 25.0% |
| !!! | ATTGAAAATTTTGACCTGTA+TGG | - | chr4_1:2008244-2008263 | Msa0529010:intron | 25.0% |
| ! | TAAAACAACAAGGTAAAATG+AGG | + | chr4_1:2008386-2008405 | None:intergenic | 25.0% |
| !!! | AAAAGCATCATAAAACAACA+AGG | + | chr4_1:2008396-2008415 | None:intergenic | 25.0% |
| !!! | TGTTATTCTGTTTTAGTTTC+TGG | - | chr4_1:2008493-2008512 | Msa0529010:CDS | 25.0% |
| !!! | GTTATTCTGTTTTAGTTTCT+GGG | - | chr4_1:2008494-2008513 | Msa0529010:CDS | 25.0% |
| ! | TGTACAAAATTCACTTAAGT+TGG | - | chr4_1:2008826-2008845 | Msa0529010:five_prime_UTR | 25.0% |
| TCAAAATTCAAAAATCTGGG+TGG | + | chr4_1:2004525-2004544 | None:intergenic | 30.0% | |
| !! | TTTGAATTTTGATCGATGGA+AGG | - | chr4_1:2004533-2004552 | Msa0529010:three_prime_UTR | 30.0% |
| !! | TTGAATTTTGATCGATGGAA+GGG | - | chr4_1:2004534-2004553 | Msa0529010:three_prime_UTR | 30.0% |
| AAAAATAACAAACAGTTGGC+AGG | + | chr4_1:2004917-2004936 | None:intergenic | 30.0% | |
| GTTATAGAATGTGGTATGAT+TGG | - | chr4_1:2005247-2005266 | Msa0529010:intron | 30.0% | |
| GTGCAGTAAACATATAGTAA+AGG | - | chr4_1:2005281-2005300 | Msa0529010:intron | 30.0% | |
| ATAGTAAAGGCTTATCAAAC+CGG | - | chr4_1:2005294-2005313 | Msa0529010:intron | 30.0% | |
| GATCCAGATATCTATTTAAG+GGG | + | chr4_1:2005354-2005373 | None:intergenic | 30.0% | |
| !!! | ATTGGTAAGGTTTTAAACAG+AGG | + | chr4_1:2005643-2005662 | None:intergenic | 30.0% |
| !! | ATTTGTTTTTCTTCGATGTG+AGG | - | chr4_1:2005665-2005684 | Msa0529010:intron | 30.0% |
| !! | TTTGTTTTTCTTCGATGTGA+GGG | - | chr4_1:2005666-2005685 | Msa0529010:intron | 30.0% |
| ATTGATTAGATACTTTCCGA+TGG | + | chr4_1:2005712-2005731 | None:intergenic | 30.0% | |
| GAAAACTACTGCAGAAATAT+TGG | - | chr4_1:2005926-2005945 | Msa0529010:intron | 30.0% | |
| AGAAATATTGGACTTTCTCA+TGG | - | chr4_1:2005938-2005957 | Msa0529010:intron | 30.0% | |
| !! | GGATGATAATGGTAACAAAT+AGG | - | chr4_1:2006110-2006129 | Msa0529010:intron | 30.0% |
| GTGTAAAATTGGAGTTCAAA+GGG | - | chr4_1:2006149-2006168 | Msa0529010:intron | 30.0% | |
| ! | ATGGTTTTTGATAGGTGAAA+TGG | - | chr4_1:2006198-2006217 | Msa0529010:intron | 30.0% |
| TTCTCTCAAGATTAGAATTG+AGG | + | chr4_1:2006367-2006386 | None:intergenic | 30.0% | |
| GTGTTCATATTCTACCATTT+AGG | - | chr4_1:2006444-2006463 | Msa0529010:intron | 30.0% | |
| AAGGCATGTGATATACAAAA+GGG | + | chr4_1:2006685-2006704 | None:intergenic | 30.0% | |
| GAAATGAGACACAAATAAGT+TGG | - | chr4_1:2006727-2006746 | Msa0529010:intron | 30.0% | |
| TATCAACAGATCATAACAGT+TGG | - | chr4_1:2006773-2006792 | Msa0529010:intron | 30.0% | |
| !! | GAAGTTGTCTTTTTCATCTT+TGG | + | chr4_1:2006834-2006853 | None:intergenic | 30.0% |
| ATATGGCAATAAGGAACATA+TGG | + | chr4_1:2006974-2006993 | None:intergenic | 30.0% | |
| AACTTAAAGTATGTCAATGG+AGG | - | chr4_1:2007039-2007058 | Msa0529010:intron | 30.0% | |
| ! | GTAGTTGATATTAACGATGT+GGG | + | chr4_1:2007122-2007141 | None:intergenic | 30.0% |
| ! | AGTAGTTGATATTAACGATG+TGG | + | chr4_1:2007123-2007142 | None:intergenic | 30.0% |
| ATGTGAATGACTGTATGAAT+CGG | + | chr4_1:2007380-2007399 | None:intergenic | 30.0% | |
| ! | TTTTCAAATCCTGCTTGATT+TGG | - | chr4_1:2007695-2007714 | Msa0529010:intron | 30.0% |
| AAACTAAATAAAAGGGAGGA+GGG | + | chr4_1:2007747-2007766 | None:intergenic | 30.0% | |
| AAAACTAAATAAAAGGGAGG+AGG | + | chr4_1:2007748-2007767 | None:intergenic | 30.0% | |
| !! | TTCTTTGGAATCGAATTCTT+GGG | + | chr4_1:2007817-2007836 | None:intergenic | 30.0% |
| !! | TTTCTTTGGAATCGAATTCT+TGG | + | chr4_1:2007818-2007837 | None:intergenic | 30.0% |
| AGTAGTGACTCTATTATGAA+GGG | + | chr4_1:2007890-2007909 | None:intergenic | 30.0% | |
| TAGTAGTGACTCTATTATGA+AGG | + | chr4_1:2007891-2007910 | None:intergenic | 30.0% | |
| !!! | TGTTTTGGGAGTTAGAATAA+TGG | + | chr4_1:2008050-2008069 | None:intergenic | 30.0% |
| GGAAGAAGTTGTCATAAAAA+CGG | - | chr4_1:2008076-2008095 | Msa0529010:intron | 30.0% | |
| !!! | CAAAACTCTCAGTTTTTTCT+GGG | + | chr4_1:2008613-2008632 | None:intergenic | 30.0% |
| !!! | TCAAAACTCTCAGTTTTTTC+TGG | + | chr4_1:2008614-2008633 | None:intergenic | 30.0% |
| ! | GAACTAGTAATACACTTTTG+AGG | + | chr4_1:2008671-2008690 | None:intergenic | 30.0% |
| TAGACTCACATGACAAATTA+GGG | - | chr4_1:2008736-2008755 | Msa0529010:CDS | 30.0% | |
| TTGTACAAATGTGAAATCCA+TGG | + | chr4_1:2008813-2008832 | None:intergenic | 30.0% | |
| ! | CAATATTCGTAAAGGGTACA+TGG | - | chr4_1:2004603-2004622 | Msa0529010:CDS | 35.0% |
| CACCAACACTTCTAATCAAA+AGG | + | chr4_1:2005034-2005053 | None:intergenic | 35.0% | |
| !! | AGAAGTGTTGGTGTTATAGA+AGG | - | chr4_1:2005041-2005060 | Msa0529010:intron | 35.0% |
| GAAAATACTTGTGTAGACCA+GGG | - | chr4_1:2005063-2005082 | Msa0529010:intron | 35.0% | |
| TTGGTTGTGACCAAGAAATT+GGG | + | chr4_1:2005095-2005114 | None:intergenic | 35.0% | |
| TTTGGTTGTGACCAAGAAAT+TGG | + | chr4_1:2005096-2005115 | None:intergenic | 35.0% | |
| TTGGTCACAACCAAAGAAAT+GGG | - | chr4_1:2005101-2005120 | Msa0529010:intron | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+CGG | - | chr4_1:2005137-2005156 | Msa0529010:intron | 35.0% | |
| TATAACGAGAAAGACTTGTG+TGG | + | chr4_1:2005233-2005252 | None:intergenic | 35.0% | |
| GTCTTTCTCGTTATAGAATG+TGG | - | chr4_1:2005238-2005257 | Msa0529010:CDS | 35.0% | |
| CAACCCCTTAAATAGATATC+TGG | - | chr4_1:2005348-2005367 | Msa0529010:intron | 35.0% | |
| TTAAGTAGTGCTTGCGTTAA+TGG | - | chr4_1:2005526-2005545 | Msa0529010:intron | 35.0% | |
| ! | TCAAATATGGTTGATGTGTG+TGG | - | chr4_1:2005567-2005586 | Msa0529010:intron | 35.0% |
| !! | CTTTGGGATAGAAATTCCAT+CGG | - | chr4_1:2005693-2005712 | Msa0529010:intron | 35.0% |
| CACCATTGAATATTCAGTCA+CGG | - | chr4_1:2005781-2005800 | Msa0529010:intron | 35.0% | |
| CATTAATAGCCAGTAGTGAA+AGG | + | chr4_1:2005814-2005833 | None:intergenic | 35.0% | |
| ! | GCAGTAGTTTTCTTACAATC+TGG | + | chr4_1:2005918-2005937 | None:intergenic | 35.0% |
| TTCTCATGGATGCAAACATA+AGG | - | chr4_1:2005952-2005971 | Msa0529010:intron | 35.0% | |
| GGTGTAAAATTGGAGTTCAA+AGG | - | chr4_1:2006148-2006167 | Msa0529010:intron | 35.0% | |
| TAAAATTGGAGTTCAAAGGG+AGG | - | chr4_1:2006152-2006171 | Msa0529010:intron | 35.0% | |
| AACATAACCTAATGCTAAGC+TGG | - | chr4_1:2006494-2006513 | Msa0529010:intron | 35.0% | |
| CAAGGCATGTGATATACAAA+AGG | + | chr4_1:2006686-2006705 | None:intergenic | 35.0% | |
| TGTATGAATATGACCAGACA+AGG | + | chr4_1:2006704-2006723 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGGCTTTCTATG+AGG | + | chr4_1:2006860-2006879 | None:intergenic | 35.0% |
| TGTTCCTTATTGCCATATGA+TGG | - | chr4_1:2006976-2006995 | Msa0529010:intron | 35.0% | |
| AGAACCATCATATGGCAATA+AGG | + | chr4_1:2006983-2007002 | None:intergenic | 35.0% | |
| ! | AAGAGATTTACCTGTTTTCC+AGG | + | chr4_1:2007270-2007289 | None:intergenic | 35.0% |
| ! | ATGAATCGGCCAATTTTCTT+TGG | + | chr4_1:2007366-2007385 | None:intergenic | 35.0% |
| GATTCATACAGTCATTCACA+TGG | - | chr4_1:2007379-2007398 | Msa0529010:CDS | 35.0% | |
| TGATCATACAGTCATTCACA+TGG | - | chr4_1:2007494-2007513 | Msa0529010:intron | 35.0% | |
| ! | TTTTCGTATGAACGAGATCA+GGG | - | chr4_1:2007654-2007673 | Msa0529010:intron | 35.0% |
| TATTATGAAGGGTAAACCCT+CGG | + | chr4_1:2007879-2007898 | None:intergenic | 35.0% | |
| TTTATGACAACTTCTTCCTG+TGG | + | chr4_1:2008074-2008093 | None:intergenic | 35.0% | |
| TGAGAGAATAGCCAATGAAA+GGG | - | chr4_1:2008148-2008167 | Msa0529010:intron | 35.0% | |
| TTCAAATTCCACCCTTTCAT+TGG | + | chr4_1:2008162-2008181 | None:intergenic | 35.0% | |
| ! | TTTTGACCTGTATGGTTTAC+CGG | - | chr4_1:2008252-2008271 | Msa0529010:intron | 35.0% |
| AGGTAAAATGAGGTCAATCT+TGG | + | chr4_1:2008376-2008395 | None:intergenic | 35.0% | |
| CAGCTGTCAAAACAAGATAA+CGG | - | chr4_1:2008560-2008579 | Msa0529010:intron | 35.0% | |
| ! | GTGTATTACTAGTTCTTCGA+AGG | - | chr4_1:2008676-2008695 | Msa0529010:CDS | 35.0% |
| CTAGACTCACATGACAAATT+AGG | - | chr4_1:2008735-2008754 | Msa0529010:CDS | 35.0% | |
| AGACTCACATGACAAATTAG+GGG | - | chr4_1:2008737-2008756 | Msa0529010:CDS | 35.0% | |
| !!! | CAAGTGTTTTGTTTTCACCA+TGG | - | chr4_1:2008793-2008812 | Msa0529010:five_prime_UTR | 35.0% |
| AATTCCACGTAATCTTCCAC+CGG | + | chr4_1:2004815-2004834 | None:intergenic | 40.0% | |
| ATTACGTGGAATTGTCTGAG+CGG | - | chr4_1:2004822-2004841 | Msa0529010:intron | 40.0% | |
| GAATTGTCTGAGCGGTATTT+GGG | - | chr4_1:2004830-2004849 | Msa0529010:intron | 40.0% | |
| AATTGTCTGAGCGGTATTTG+GGG | - | chr4_1:2004831-2004850 | Msa0529010:intron | 40.0% | |
| ! | TATTTGGGGTTTCAACAACC+TGG | - | chr4_1:2004845-2004864 | Msa0529010:intron | 40.0% |
| ! | ATTTGGGGTTTCAACAACCT+GGG | - | chr4_1:2004846-2004865 | Msa0529010:intron | 40.0% |
| ! | GTTTATGCATTTGCTGATGC+TGG | - | chr4_1:2004872-2004891 | Msa0529010:intron | 40.0% |
| !! | ACTTCTAATCAAAAGGCGTC+TGG | + | chr4_1:2005027-2005046 | None:intergenic | 40.0% |
| !! | CGCCTTTTGATTAGAAGTGT+TGG | - | chr4_1:2005029-2005048 | Msa0529010:intron | 40.0% |
| GGAAAATACTTGTGTAGACC+AGG | - | chr4_1:2005062-2005081 | Msa0529010:intron | 40.0% | |
| TGTGACCAAGAAATTGGGTT+TGG | + | chr4_1:2005090-2005109 | None:intergenic | 40.0% | |
| CTTGGTCACAACCAAAGAAA+TGG | - | chr4_1:2005100-2005119 | Msa0529010:intron | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | + | chr4_1:2005114-2005133 | None:intergenic | 40.0% | |
| TGCTTGAAAGGTCTTCTGTT+TGG | - | chr4_1:2005319-2005338 | Msa0529010:intron | 40.0% | |
| CTACTTAAACCGTGGGTATT+GGG | + | chr4_1:2005514-2005533 | None:intergenic | 40.0% | |
| ACTACTTAAACCGTGGGTAT+TGG | + | chr4_1:2005515-2005534 | None:intergenic | 40.0% | |
| TTAATGGTTGCGGTTACGTT+GGG | - | chr4_1:2005542-2005561 | Msa0529010:intron | 40.0% | |
| ! | TTCGATGTGAGGGTTTTCTT+TGG | - | chr4_1:2005676-2005695 | Msa0529010:intron | 40.0% |
| ! | TCGATGTGAGGGTTTTCTTT+GGG | - | chr4_1:2005677-2005696 | Msa0529010:intron | 40.0% |
| CTCCGTGACTGAATATTCAA+TGG | + | chr4_1:2005786-2005805 | None:intergenic | 40.0% | |
| TGAATATTCAGTCACGGAGA+CGG | - | chr4_1:2005787-2005806 | Msa0529010:intron | 40.0% | |
| AAACACGAAACATACGAGTG+AGG | + | chr4_1:2006045-2006064 | None:intergenic | 40.0% | |
| TGTCATGCTTGGGATGATAA+TGG | - | chr4_1:2006099-2006118 | Msa0529010:intron | 40.0% | |
| ! | CTTTTGACCAGCTTAGCATT+AGG | + | chr4_1:2006504-2006523 | None:intergenic | 40.0% |
| TGTATATCACATGCCTTGTC+TGG | - | chr4_1:2006688-2006707 | Msa0529010:intron | 40.0% | |
| ATTGCCATATGATGGTTCTC+AGG | - | chr4_1:2006984-2007003 | Msa0529010:intron | 40.0% | |
| !! | AGTATGTCAATGGAGGTGTT+TGG | - | chr4_1:2007046-2007065 | Msa0529010:intron | 40.0% |
| ! | ACACATGGATTGAGATGATG+TGG | - | chr4_1:2007182-2007201 | Msa0529010:intron | 40.0% |
| ! | ATGGATTGAGATGATGTGGA+TGG | - | chr4_1:2007186-2007205 | Msa0529010:intron | 40.0% |
| TGGATTGAGATGATGTGGAT+GGG | - | chr4_1:2007187-2007206 | Msa0529010:intron | 40.0% | |
| ACAGGTAAATCTCTTTGAGC+TGG | - | chr4_1:2007275-2007294 | Msa0529010:intron | 40.0% | |
| CAGGTAAATCTCTTTGAGCT+GGG | - | chr4_1:2007276-2007295 | Msa0529010:intron | 40.0% | |
| AGGTAAATCTCTTTGAGCTG+GGG | - | chr4_1:2007277-2007296 | Msa0529010:intron | 40.0% | |
| ! | CTTTTCGTATGAACGAGATC+AGG | - | chr4_1:2007653-2007672 | Msa0529010:intron | 40.0% |
| CTGACTATTCCAAATCAAGC+AGG | + | chr4_1:2007707-2007726 | None:intergenic | 40.0% | |
| AAGAGAAATCTCTCTTCCGA+GGG | - | chr4_1:2007860-2007879 | Msa0529010:intron | 40.0% | |
| ! | CTTCTTCCTGTGGATGTTTT+GGG | + | chr4_1:2008064-2008083 | None:intergenic | 40.0% |
| ! | ACTTCTTCCTGTGGATGTTT+TGG | + | chr4_1:2008065-2008084 | None:intergenic | 40.0% |
| !! | ATTAGAAGCTGAGAAGTGCT+TGG | - | chr4_1:2008118-2008137 | Msa0529010:intron | 40.0% |
| GTGAGAGAATAGCCAATGAA+AGG | - | chr4_1:2008147-2008166 | Msa0529010:intron | 40.0% | |
| TTCAGCAATCTATCAGGAGT+AGG | + | chr4_1:2008321-2008340 | None:intergenic | 40.0% | |
| AGTTGCTTCAGCAATCTATC+AGG | + | chr4_1:2008327-2008346 | None:intergenic | 40.0% | |
| ! | ACTAGTTCTTCGAAGGATGT+TGG | - | chr4_1:2008683-2008702 | Msa0529010:CDS | 40.0% |
| GATCGATGGAAGGGAAGAAA+AGG | - | chr4_1:2004543-2004562 | Msa0529010:intron | 45.0% | |
| TTCAACCTCTCCATCACTGA+CGG | - | chr4_1:2004638-2004657 | Msa0529010:CDS | 45.0% | |
| GGAATTGTCTGAGCGGTATT+TGG | - | chr4_1:2004829-2004848 | Msa0529010:intron | 45.0% | |
| GCAAATGCATAAACAGACCC+AGG | + | chr4_1:2004866-2004885 | None:intergenic | 45.0% | |
| ! | ATGCTGGTGATGCTCATAAG+AGG | - | chr4_1:2004888-2004907 | Msa0529010:intron | 45.0% |
| ! | TGCTGGTGATGCTCATAAGA+GGG | - | chr4_1:2004889-2004908 | Msa0529010:intron | 45.0% |
| CAACGTGTCAGTGTTAGTGT+TGG | + | chr4_1:2004948-2004967 | None:intergenic | 45.0% | |
| ! | AAGAAATTGGGTTTGGTCCC+TGG | + | chr4_1:2005083-2005102 | None:intergenic | 45.0% |
| AGGGACCAAACCCAATTTCT+TGG | - | chr4_1:2005082-2005101 | Msa0529010:intron | 45.0% | |
| TGTGACCAAACCCAATTGTG+TGG | - | chr4_1:2005200-2005219 | Msa0529010:CDS | 45.0% | |
| ATCAAACCGGTGTGCTTGAA+AGG | - | chr4_1:2005307-2005326 | Msa0529010:intron | 45.0% | |
| AGAAGACCTTTCAAGCACAC+CGG | + | chr4_1:2005316-2005335 | None:intergenic | 45.0% | |
| TCACTTGAACCCAATACCCA+CGG | - | chr4_1:2005502-2005521 | Msa0529010:intron | 45.0% | |
| GCAAGCACTACTTAAACCGT+GGG | + | chr4_1:2005521-2005540 | None:intergenic | 45.0% | |
| AGTGCTTGCGTTAATGGTTG+CGG | - | chr4_1:2005532-2005551 | Msa0529010:intron | 45.0% | |
| GTTAATGGTTGCGGTTACGT+TGG | - | chr4_1:2005541-2005560 | Msa0529010:intron | 45.0% | |
| TAATGGTTGCGGTTACGTTG+GGG | - | chr4_1:2005543-2005562 | Msa0529010:intron | 45.0% | |
| GTTACGTTGGGGGTCAAATA+TGG | - | chr4_1:2005554-2005573 | Msa0529010:intron | 45.0% | |
| AGGTCTACAACTGCAACATC+AGG | + | chr4_1:2005623-2005642 | None:intergenic | 45.0% | |
| TGTGAATGTTGCAGTTGTCG+TGG | - | chr4_1:2005838-2005857 | Msa0529010:intron | 45.0% | |
| TTGTCGTGGACGTTTGAGAA+GGG | - | chr4_1:2005852-2005871 | Msa0529010:intron | 45.0% | |
| GAATGACACTGCATTGGAGA+TGG | - | chr4_1:2005877-2005896 | Msa0529010:intron | 45.0% | |
| TGTCTTGGAGATGTCATGCT+TGG | - | chr4_1:2006088-2006107 | Msa0529010:intron | 45.0% | |
| GTCTTGGAGATGTCATGCTT+GGG | - | chr4_1:2006089-2006108 | Msa0529010:intron | 45.0% | |
| ATCGAGGATCTACTTGTGAG+CGG | - | chr4_1:2006642-2006661 | Msa0529010:intron | 45.0% | |
| TCCACCTGAGAACCATCATA+TGG | + | chr4_1:2006991-2007010 | None:intergenic | 45.0% | |
| AGTGCTCATAGTGCAACACA+TGG | - | chr4_1:2007167-2007186 | Msa0529010:intron | 45.0% | |
| ! | CCAATTTTCTTTGGCAGCAC+TGG | + | chr4_1:2007357-2007376 | None:intergenic | 45.0% |
| CCAGTGCTGCCAAAGAAAAT+TGG | - | chr4_1:2007354-2007373 | Msa0529010:intron | 45.0% | |
| GGTCCTTGTGACTAACAGAA+CGG | - | chr4_1:2007400-2007419 | Msa0529010:CDS | 45.0% | |
| GTCCTTGTGACTAACAGAAC+GGG | - | chr4_1:2007401-2007420 | Msa0529010:CDS | 45.0% | |
| TCCTTGTGACTAACAGAACG+GGG | - | chr4_1:2007402-2007421 | Msa0529010:CDS | 45.0% | |
| GGTCCTTGTGACTAACAGAA+CGG | - | chr4_1:2007400-2007419 | Msa0529010:CDS | 45.0% | |
| GTCCTTGTGACTAACAGAAC+GGG | - | chr4_1:2007401-2007420 | Msa0529010:CDS | 45.0% | |
| TCCTTGTGACTAACAGAACG+GGG | - | chr4_1:2007402-2007421 | Msa0529010:CDS | 45.0% | |
| GAAGAGAAATCTCTCTTCCG+AGG | - | chr4_1:2007859-2007878 | Msa0529010:intron | 45.0% | |
| CTAACTCCCAAAACATCCAC+AGG | - | chr4_1:2008055-2008074 | Msa0529010:intron | 45.0% | |
| GAGAATAGCCAATGAAAGGG+TGG | - | chr4_1:2008151-2008170 | Msa0529010:intron | 45.0% | |
| TATGGTTTACCGGCATAGCA+TGG | - | chr4_1:2008262-2008281 | Msa0529010:intron | 45.0% | |
| TCTATCAGGAGTAGGACCAA+TGG | + | chr4_1:2008313-2008332 | None:intergenic | 45.0% | |
| CGGCAACAAATCTCTTCAAG+AGG | - | chr4_1:2008580-2008599 | Msa0529010:intron | 45.0% | |
| !! | CATGTGAGTCTAGTTCTCCT+TGG | + | chr4_1:2008728-2008747 | None:intergenic | 45.0% |
| !!! | AAAAAAAATTATGTTTTAAT+TGG | - | chr4_1:2005384-2005403 | Msa0529010:intron | 5.0% |
| ! | TGAAACCGTCAGTGATGGAG+AGG | + | chr4_1:2004646-2004665 | None:intergenic | 50.0% |
| TTCACCGCTTGGAACTGCAA+CGG | - | chr4_1:2004662-2004681 | Msa0529010:CDS | 50.0% | |
| AGTACCGTTGCAGTTCCAAG+CGG | + | chr4_1:2004669-2004688 | None:intergenic | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | + | chr4_1:2005208-2005227 | None:intergenic | 50.0% | |
| CAAACCCAATTGTGTGGTCC+TGG | - | chr4_1:2005206-2005225 | Msa0529010:CDS | 50.0% | |
| TGGACCAGGACCACACAATT+GGG | + | chr4_1:2005213-2005232 | None:intergenic | 50.0% | |
| GAGAAAGACTTGTGTGGACC+AGG | + | chr4_1:2005227-2005246 | None:intergenic | 50.0% | |
| CGCAAGCACTACTTAAACCG+TGG | + | chr4_1:2005522-2005541 | None:intergenic | 50.0% | |
| AATGGTTGCGGTTACGTTGG+GGG | - | chr4_1:2005544-2005563 | Msa0529010:intron | 50.0% | |
| CTTCTCTGTGACTGCGATTG+GGG | + | chr4_1:2005593-2005612 | None:intergenic | 50.0% | |
| GCTTCTCTGTGACTGCGATT+GGG | + | chr4_1:2005594-2005613 | None:intergenic | 50.0% | |
| GTTGTCGTGGACGTTTGAGA+AGG | - | chr4_1:2005851-2005870 | Msa0529010:intron | 50.0% | |
| AGGGAGGAATGACACTGCAT+TGG | - | chr4_1:2005871-2005890 | Msa0529010:intron | 50.0% | |
| TCGAGGATCTACTTGTGAGC+GGG | - | chr4_1:2006643-2006662 | Msa0529010:intron | 50.0% | |
| GCCATATGATGGTTCTCAGG+TGG | - | chr4_1:2006987-2007006 | Msa0529010:intron | 50.0% | |
| TTTCCAGGCCTGCATTTCTG+CGG | + | chr4_1:2007255-2007274 | None:intergenic | 50.0% | |
| GAAATGCAGGCCTGGAAAAC+AGG | - | chr4_1:2007257-2007276 | Msa0529010:intron | 50.0% | |
| AAATCTCTTTGAGCTGGGGC+TGG | - | chr4_1:2007281-2007300 | Msa0529010:intron | 50.0% | |
| CTGGTTTCACGCTTTCAGTC+AGG | - | chr4_1:2007300-2007319 | Msa0529010:intron | 50.0% | |
| ACGCTTTCAGTCAGGTGTGA+GGG | - | chr4_1:2007308-2007327 | Msa0529010:intron | 50.0% | |
| !! | TTCTTTGGCAGCACTGGCAA+AGG | + | chr4_1:2007351-2007370 | None:intergenic | 50.0% |
| GCTATGCCGGTAAACCATAC+AGG | + | chr4_1:2008261-2008280 | None:intergenic | 50.0% | |
| AGGGTGTAACCATGCTATGC+CGG | + | chr4_1:2008274-2008293 | None:intergenic | 50.0% | |
| ATGGTTACACCCTGTGTCAC+AGG | - | chr4_1:2008281-2008300 | Msa0529010:intron | 50.0% | |
| TGGCTTTCTCCTGTGACACA+GGG | + | chr4_1:2008293-2008312 | None:intergenic | 50.0% | |
| ATGGCTTTCTCCTGTGACAC+AGG | + | chr4_1:2008294-2008313 | None:intergenic | 50.0% | |
| GTGTCACAGGAGAAAGCCAT+TGG | - | chr4_1:2008294-2008313 | Msa0529010:intron | 50.0% | |
| CAAGTAAGCGTTCTCGTCCA+AGG | - | chr4_1:2008708-2008727 | Msa0529010:CDS | 50.0% | |
| AGCGGTGAAACCGTCAGTGA+TGG | + | chr4_1:2004651-2004670 | None:intergenic | 55.0% | |
| TCACTGACGGTTTCACCGCT+TGG | - | chr4_1:2004651-2004670 | Msa0529010:CDS | 55.0% | |
| GTGGACCAGGACCACACAAT+TGG | + | chr4_1:2005214-2005233 | None:intergenic | 55.0% | |
| CGCTTCTCTGTGACTGCGAT+TGG | + | chr4_1:2005595-2005614 | None:intergenic | 55.0% | |
| GGAGACGGTCCTTTCACTAC+TGG | - | chr4_1:2005802-2005821 | Msa0529010:intron | 55.0% | |
| TCGTGGACGTTTGAGAAGGG+AGG | - | chr4_1:2005855-2005874 | Msa0529010:intron | 55.0% | |
| GGATCTACTTGTGAGCGGGT+AGG | - | chr4_1:2006647-2006666 | Msa0529010:intron | 55.0% | |
| ACTTTCCTGAGCCCAGCACT+TGG | + | chr4_1:2007219-2007238 | None:intergenic | 55.0% | |
| GGCCTGCATTTCTGCGGATT+GGG | + | chr4_1:2007249-2007268 | None:intergenic | 55.0% | |
| AGGCCTGCATTTCTGCGGAT+TGG | + | chr4_1:2007250-2007269 | None:intergenic | 55.0% | |
| AATCCGCAGAAATGCAGGCC+TGG | - | chr4_1:2007249-2007268 | Msa0529010:intron | 55.0% | |
| CACGCTTTCAGTCAGGTGTG+AGG | - | chr4_1:2007307-2007326 | Msa0529010:intron | 55.0% | |
| TGTGAGGGCTGAGACAAGTG+TGG | - | chr4_1:2007323-2007342 | Msa0529010:intron | 55.0% | |
| GCCCCGTTCTGTTAGTCACA+AGG | + | chr4_1:2007406-2007425 | None:intergenic | 55.0% | |
| GCCCCGTTCTGTTAGTCACA+AGG | + | chr4_1:2007406-2007425 | None:intergenic | 55.0% | |
| ! | TGAAGCAGCGTGCTGCTCAG+TGG | - | chr4_1:2004783-2004802 | Msa0529010:CDS | 60.0% |
| ! | GAAGCAGCGTGCTGCTCAGT+GGG | - | chr4_1:2004784-2004803 | Msa0529010:CDS | 60.0% |
| CCACGTAATCTTCCACCGGC+TGG | + | chr4_1:2004811-2004830 | None:intergenic | 60.0% | |
| CCAGCCGGTGGAAGATTACG+TGG | - | chr4_1:2004808-2004827 | Msa0529010:CDS | 60.0% | |
| ATGGGCCCATGCCAAGTGCT+GGG | - | chr4_1:2007205-2007224 | Msa0529010:intron | 60.0% | |
| CTGAGCCCAGCACTTGGCAT+GGG | + | chr4_1:2007213-2007232 | None:intergenic | 60.0% | |
| !! | ATTTCTGCGGATTGGGCCCG+GGG | + | chr4_1:2007242-2007261 | None:intergenic | 60.0% |
| !! | CATTTCTGCGGATTGGGCCC+GGG | + | chr4_1:2007243-2007262 | None:intergenic | 60.0% |
| !! | GCATTTCTGCGGATTGGGCC+CGG | + | chr4_1:2007244-2007263 | None:intergenic | 60.0% |
| GGCCCAATCCGCAGAAATGC+AGG | - | chr4_1:2007244-2007263 | Msa0529010:intron | 60.0% | |
| TGCTGCTCAGTGGGACCAGC+CGG | - | chr4_1:2004793-2004812 | Msa0529010:CDS | 65.0% | |
| GATGGGCCCATGCCAAGTGC+TGG | - | chr4_1:2007204-2007223 | Msa0529010:intron | 65.0% | |
| CCTGAGCCCAGCACTTGGCA+TGG | + | chr4_1:2007214-2007233 | None:intergenic | 65.0% | |
| !! | CCATGCCAAGTGCTGGGCTC+AGG | - | chr4_1:2007211-2007230 | Msa0529010:intron | 65.0% |
| GCTGGGCTCAGGAAAGTCCC+CGG | - | chr4_1:2007222-2007241 | Msa0529010:intron | 65.0% | |
| CTGGGCTCAGGAAAGTCCCC+GGG | - | chr4_1:2007223-2007242 | Msa0529010:intron | 65.0% | |
| TGCTCAGTGGGACCAGCCGG+TGG | - | chr4_1:2004796-2004815 | Msa0529010:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2004480 | 2008857 | 2004480 | ID=Msa0529010;Name=Msa0529010 |
| chr4_1 | mRNA | 2004480 | 2008857 | 2004480 | ID=Msa0529010-mRNA-1;Parent=Msa0529010;Name=Msa0529010-mRNA-1;_AED=0.15;_eAED=0.15;_QI=68|0.8|0.83|1|0.8|0.66|6|82|243 |
| chr4_1 | exon | 2004480 | 2004558 | 2004480 | ID=Msa0529010-mRNA-1:exon:650;Parent=Msa0529010-mRNA-1 |
| chr4_1 | exon | 2004586 | 2004828 | 2004586 | ID=Msa0529010-mRNA-1:exon:649;Parent=Msa0529010-mRNA-1 |
| chr4_1 | exon | 2005138 | 2005260 | 2005138 | ID=Msa0529010-mRNA-1:exon:648;Parent=Msa0529010-mRNA-1 |
| chr4_1 | exon | 2007357 | 2007485 | 2007357 | ID=Msa0529010-mRNA-1:exon:647;Parent=Msa0529010-mRNA-1 |
| chr4_1 | exon | 2008466 | 2008569 | 2008466 | ID=Msa0529010-mRNA-1:exon:646;Parent=Msa0529010-mRNA-1 |
| chr4_1 | exon | 2008654 | 2008857 | 2008654 | ID=Msa0529010-mRNA-1:exon:645;Parent=Msa0529010-mRNA-1 |
| chr4_1 | five_prime_UTR | 2008790 | 2008857 | 2008790 | ID=Msa0529010-mRNA-1:five_prime_utr;Parent=Msa0529010-mRNA-1 |
| chr4_1 | CDS | 2008654 | 2008789 | 2008654 | ID=Msa0529010-mRNA-1:cds;Parent=Msa0529010-mRNA-1 |
| chr4_1 | CDS | 2008466 | 2008569 | 2008466 | ID=Msa0529010-mRNA-1:cds;Parent=Msa0529010-mRNA-1 |
| chr4_1 | CDS | 2007357 | 2007485 | 2007357 | ID=Msa0529010-mRNA-1:cds;Parent=Msa0529010-mRNA-1 |
| chr4_1 | CDS | 2005138 | 2005260 | 2005138 | ID=Msa0529010-mRNA-1:cds;Parent=Msa0529010-mRNA-1 |
| chr4_1 | CDS | 2004589 | 2004828 | 2004589 | ID=Msa0529010-mRNA-1:cds;Parent=Msa0529010-mRNA-1 |
| chr4_1 | three_prime_UTR | 2004586 | 2004588 | 2004586 | ID=Msa0529010-mRNA-1:three_prime_utr;Parent=Msa0529010-mRNA-1 |
| chr4_1 | three_prime_UTR | 2004480 | 2004558 | 2004480 | ID=Msa0529010-mRNA-1:three_prime_utr;Parent=Msa0529010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
